Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_fragilis.result/NZ_WCIE010000061.8188.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_fragilis.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_fragilis.result/NZ_WCIE010000061.8188.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_fragilis.result/NZ_WCIE010000061.8188.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_fragilis.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_WCIE010000061.8188.AOI_01 Sequence length = 21071 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 +1 304 319 453 147 132 -8.86 0 0 - 99 - - 0 -3 707 317 159 546 156 -3.53 0 - 0 99 - - 0 -1 759 711 565 192 144 -3.87 0 - - 99 0 0 0 -1 990 975 784 204 189 -7.80 0 - - 99 0 0 - 0001 +3 3 24 998 993 972 4.95 99 - - 99 - - - -2 1048 607 356 690 249 0.38 0 - - 99 - 0 0 0002 +1 991 1009 1182 189 171 3.92 50 50 - - 49 - - 0003 -3 1256 1256 1116 138 138 -1.68 99 - - - - - 99 0004 -1 1446 1377 1234 210 141 -1.66 99 - - - 99 - - -2 1468 1450 1298 168 150 -6.21 0 99 - - 0 0 - +2 1457 1484 1633 174 147 -12.57 0 99 0 - 0 - - -1 1896 1626 1447 447 177 -3.55 0 99 - - 0 - - -3 2009 1979 1830 177 147 0.86 0 99 - - - - 0 0005 +1 1267 1279 2040 771 759 9.17 99 99 - - - - - -3 2537 2486 2334 201 150 -3.43 0 99 - - 0 - 0 0006 +1 2044 2059 2601 555 540 11.05 99 99 - - - - - 0007 -2 2863 2833 2699 162 132 -2.55 99 - - - - 99 - -3 3038 2924 2736 300 186 -4.66 0 - - 99 - - 0 -2 3181 3151 3026 153 123 -4.24 0 - - 99 - 0 - +1 3043 3070 3249 204 177 -4.08 0 0 - 99 - - - -3 3863 3557 3378 483 177 -0.82 0 - - 99 - - 0 +1 3901 3922 4050 147 126 -7.28 0 0 - 99 - - 0 -3 4058 4022 3864 192 156 -2.53 0 - - 99 - - 0 -2 4120 4108 3974 144 132 -9.31 0 - - 99 - 0 - +1 4051 4084 4209 156 123 -1.50 0 0 - 99 - - 0 -3 4334 4280 4059 273 219 0.84 0 - - 99 - - 0 -1 4464 4458 4273 189 183 -0.48 0 - - 99 0 - - -3 4700 4565 4431 267 132 -1.95 0 0 - 99 - - 0 0008 +3 2706 2766 4766 2058 1998 7.97 99 - - 99 - - - 0009 -1 4884 4857 4732 150 123 -5.00 99 - - - 99 - - +3 4824 4836 4991 165 153 0.05 0 0 99 0 - 0 - -2 5017 4981 4826 189 153 -3.05 0 0 99 0 - 0 - -1 5316 5274 5098 216 174 -2.54 0 - 99 - 0 - - -2 5431 5353 5204 225 147 -0.16 0 - 99 - - 0 - +3 5358 5388 5525 165 135 -8.42 0 - 99 0 - - - 0010 +2 4763 4775 5599 834 822 6.49 99 - 99 - - - - 0011 +1 5401 5482 5631 228 147 -5.05 99 99 - - - - - -2 5758 5701 5534 222 165 -0.82 1 - - 98 - 1 - 0012 -3 5888 5873 5628 258 243 -1.21 99 - - - - - 99 0013 -1 6000 5997 5743 255 252 0.31 99 - - - 99 - - +3 5988 6177 6311 321 132 -5.68 0 99 - 0 0 - - +2 6263 6347 6481 216 132 -5.89 0 99 0 - 0 0 - -2 6571 6478 6263 306 213 -4.99 0 99 0 - 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99 - - -2 21070 21064 20930 138 132 -6.95 0 0 - - 99 0 - 0049 -1 21069 21033 20749 318 282 6.02 99 0 - - 99 - -