Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_fragilis.result/NZ_WCIE010000011.8193.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_fragilis.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_fragilis.result/NZ_WCIE010000011.8193.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_fragilis.result/NZ_WCIE010000011.8193.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_fragilis.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_WCIE010000011.8193.AOI_01 Sequence length = 21515 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 0001 +1 100 142 501 399 357 2.30 99 99 - - - - - 0002 -1 540 513 187 351 324 11.21 99 - - - 99 - - 0003 +2 398 437 727 327 288 -9.16 99 - 99 - - - - +1 670 868 1002 330 132 0.90 0 0 - - - - 99 0004 -3 1124 1112 510 612 600 10.39 99 - - - - - 99 0005 -3 1253 1247 1125 126 120 -9.61 99 - - - - - 99 +3 1161 1161 1373 210 210 -0.28 0 - 0 0 - 99 - -3 1661 1523 1323 336 198 -6.61 0 - - - - 99 0 +2 1493 1580 1792 297 210 -2.42 0 - 0 - - 99 - 0006 -2 1861 1840 1157 702 681 10.61 99 - - - - 99 - -3 1898 1880 1662 234 216 -7.31 0 - - 99 - - 0 0007 +3 1602 1743 2033 429 288 -4.34 99 - - 99 - - - +1 1858 1948 2073 213 123 -3.71 0 0 0 - 99 - - -3 2144 2117 1986 156 129 -8.22 0 - 0 - 99 - 0 +3 2034 2052 2231 195 177 -13.71 0 - 0 0 99 - - +2 1820 1928 2323 501 393 -0.73 0 - 0 - 99 - - +3 2232 2265 2390 156 123 -13.46 0 0 - 0 99 0 - +2 2324 2327 2449 123 120 3.03 0 0 0 - 99 0 - +3 2601 2625 2753 150 126 -13.71 0 0 - 0 99 - - +1 2074 2644 2775 699 129 0.77 0 0 - - 99 - - +3 2754 2859 2996 240 135 -14.70 0 0 0 0 99 - - +2 2816 3059 3211 393 150 -3.02 0 - 0 - 99 - - +1 3076 3157 3306 228 147 -4.18 0 0 - - 99 - 0 -3 3455 3260 3135 318 123 -8.67 0 0 - - 99 - 0 +2 3254 3269 3472 216 201 0.54 0 - 0 - 99 - - +1 3391 3466 3630 237 162 1.15 0 0 - - 99 - - +1 3712 3718 3855 141 135 -3.98 0 0 0 0 99 - - +3 3600 3720 3896 294 174 -12.50 0 - 0 0 99 - - +2 3554 3569 3985 429 414 2.86 0 - 0 - 99 - - +2 4142 4163 4327 183 162 -2.54 0 0 0 - 99 - - +3 4593 4638 4760 165 120 -15.24 0 0 - 0 99 - - 0008 +1 4054 4252 4824 768 570 -3.48 0 0 0 - 99 - - +2 4667 4787 4993 324 204 -0.38 0 - 0 - 99 - - +1 4825 4849 5031 204 180 -0.41 0 0 - - 99 - - +3 4890 4935 5060 168 123 -9.60 0 - - 0 99 0 - +3 5157 5160 5339 180 177 -9.26 0 0 0 0 99 - - +1 5032 5191 5517 483 324 -3.48 0 0 0 - 99 - - +2 5141 5420 5578 435 156 -1.77 0 - 0 - 99 - - +2 5807 5828 5962 153 132 -1.79 0 0 0 - 99 - 0 -3 5966 5960 5808 156 150 -8.81 0 0 0 - 99 0 0 +1 5524 5662 6003 477 339 0.60 0 0 - - 99 - - -3 6164 6137 6000 162 135 -12.07 0 - - - 99 0 0 -2 6199 6142 5957 240 183 -10.65 0 - - - 99 0 - 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