Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_fragilis.result/NZ_VOHX010000031.8153.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_fragilis.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_fragilis.result/NZ_VOHX010000031.8153.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_fragilis.result/NZ_VOHX010000031.8153.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_fragilis.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_VOHX010000031.8153.AOI_01 Sequence length = 15364 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 -1 258 165 31 225 132 -8.53 0 - 99 - 0 - - +3 150 237 371 219 132 -1.44 0 - 99 0 - 0 - -2 604 220 68 534 150 1.34 0 - 99 - 0 0 - -1 681 525 328 351 195 -3.34 0 - 99 - 0 0 - 0001 +2 2 38 961 957 921 11.68 99 - 99 - - - - -1 1461 1449 1288 171 159 -1.31 0 - 99 - 0 0 - -3 1550 1526 1404 144 120 -3.30 0 - 99 - - 0 0 +3 1416 1512 1634 216 120 -4.75 0 - 99 0 - 0 - -1 2235 2223 2062 171 159 -1.57 0 - 99 - 0 0 - 0002 -2 2263 2110 1004 1257 1104 0.60 99 - - - - 99 - -1 2433 2394 2236 195 156 -3.05 0 - 99 - 0 - - 0003 +2 1172 1184 2584 1410 1398 7.81 99 - 99 - - - - -2 2593 2470 2348 243 120 -1.94 0 - 99 - - 0 - -1 2616 2559 2434 180 123 -0.32 0 - 99 - 0 0 - 0004 +3 2451 2502 2633 180 129 -2.21 99 - - 99 - - - 0005 +3 2634 2643 2978 342 333 9.49 99 - - 99 - - 0 -2 3205 3202 3017 186 183 -3.25 0 - - 99 - 0 - +1 3076 3079 3222 144 141 -6.78 0 0 - 99 - - 0 -3 3422 3383 3219 201 162 -0.59 0 - - 99 - - 0 +1 3325 3358 3504 177 144 -2.72 0 0 - 99 - - - 0006 +3 3006 3024 3788 780 762 7.81 99 - - 99 - - - +1 3673 3673 3825 150 150 -5.79 0 0 - - - - 99 -3 3833 3782 3450 381 330 0.50 0 - - 99 - - 0 +2 3770 3872 4021 249 147 -4.56 0 - 0 - - 99 - +1 4282 4282 4488 204 204 -11.38 0 0 - 0 - 99 - 0007 -2 4513 4510 3818 693 690 8.37 99 - - - - 99 - +3 4167 4260 4517 348 255 0.42 0 - - 0 - 99 - 0008 -3 4556 4550 4413 141 135 -5.23 99 - - - - - 99 0009 -1 4800 4737 4507 291 228 -2.35 99 - - - 99 - - -3 4910 4769 4581 327 186 -5.80 0 - - - 0 99 0 +2 4805 4826 5038 231 210 4.04 0 - 0 - - 99 - +3 4863 4899 5045 180 144 0.11 0 - - 0 - 99 - +3 5154 5175 5327 171 150 -2.01 0 - 0 0 - 99 - +2 5039 5165 5425 384 258 1.51 0 - 0 - - 99 - 0010 -2 5611 5566 4553 1056 1011 9.44 99 - - - - 99 - 0011 +1 5560 5575 5787 225 210 -3.22 99 99 - - - - - 0012 +3 5733 5781 5927 192 144 -3.24 69 - - 69 - - 30 0013 -3 6032 5840 5661 369 177 -4.94 99 - - - - - 99 0014 +1 5893 5911 6069 174 156 -3.47 99 99 - - - - - +2 6101 6296 6574 471 276 6.04 0 - 0 - - 99 - 0015 -2 6580 6568 6002 576 564 12.92 99 - - - - 99 - 0016 +3 6747 6762 6923 174 159 2.78 99 - - 99 - - 0 0017 -2 7060 7036 6776 282 258 0.53 99 - - - - 99 - -3 7331 7256 7119 210 135 2.78 0 97 - - 1 - 0 0018 +1 7123 7135 7776 651 639 9.05 99 99 - - 0 - - 0019 +2 7676 7676 7825 147 147 0.71 89 - 89 - 10 - - 0020 -1 7926 7335 7006 918 327 -0.40 99 - - - 99 - - -2 8038 8017 7883 153 132 -1.83 0 - - 99 - 0 0 0021 -3 8318 8198 7773 543 423 0.31 99 - - - - - 99 -2 8425 8419 8258 165 159 -11.15 0 0 - 99 - 0 - +1 8164 8278 8448 282 168 -11.20 0 0 - 99 - - - +1 8449 8455 8619 168 162 -6.04 0 0 - 99 - - 0 -2 8851 8824 8684 165 138 -3.56 0 - - 40 - 0 59 +2 8696 8729 8860 162 129 -4.10 0 - 0 99 - - 0 -3 8870 8750 8319 549 429 2.57 0 - - 99 - - 0 0022 +3 7797 7806 8879 1080 1071 6.08 99 - - 99 - - - 0023 -2 9184 9025 8852 330 171 1.20 99 - - - - 99 - +3 9171 9255 9383 210 126 -3.90 0 - 99 0 - - - -2 9529 9412 9284 243 126 -0.01 0 - 99 - - 0 - 0024 +2 8864 8876 9850 984 972 10.39 99 - 99 - - - - 0025 -2 9871 9868 9647 222 219 0.52 99 - - - - 99 - -1 10191 10134 9961 228 171 3.94 0 99 - - 0 - - -2 10243 10132 9989 252 141 -10.44 0 99 - - 0 0 - +2 10103 10142 10330 225 186 -1.90 0 99 0 - - - - +2 10451 10460 10633 180 171 -9.87 0 99 0 - 0 - - -1 10854 10803 10420 432 381 -2.09 0 99 - - 0 - - 0026 +1 9940 9991 11139 1197 1146 10.17 99 99 - - - - - -1 11286 10986 10855 429 129 2.55 0 99 - - 0 - - -3 11342 11279 11151 189 126 1.45 0 - - 99 0 - 0 -2 11374 11350 11219 153 129 -5.24 0 - - 99 - 0 - -3 11636 11636 11427 207 207 2.00 0 - - 99 - - 0 0027 +3 11082 11136 11831 747 693 6.72 99 - - 99 - - - -3 12080 11993 11832 246 159 2.46 0 99 - - - - 0 -1 12102 12015 11851 249 162 -2.25 0 99 - - 0 - 0 +2 11954 12056 12223 267 165 -4.76 0 99 0 - - - - 0028 +1 11818 11836 12231 411 393 9.68 99 99 - - - - - 0029 -3 12281 12263 12081 198 180 -2.46 99 - - - - - 99 0030 -1 12378 12252 12103 273 147 -1.63 92 - - - 92 - 7 0031 +1 12256 12256 12480 222 222 -0.38 99 99 - - - - - +1 12700 12703 12849 147 144 -2.08 0 0 - 0 - - 99 0032 +3 12339 12411 13172 831 759 -0.52 0 - - 0 - - 99 0033 +1 13075 13303 13434 357 129 -3.22 30 30 - - 4 - 64 0034 -3 13442 13361 12330 1110 1029 10.10 99 - - - - - 99 -1 13569 13323 13180 387 141 -4.53 0 0 - - 0 - 99 +3 13431 13452 13637 204 183 -4.26 0 - 0 0 - 99 - +2 13364 13592 13717 351 123 0.93 0 - 0 - - 99 - 0035 -2 14131 14068 13340 789 726 7.90 99 - - - - 99 - -3 14135 14120 13992 141 126 -3.00 0 - - - - 99 0 -2 14464 14458 14243 219 213 -5.78 0 - - - 99 0 - +2 14306 14429 14593 285 162 -4.27 0 0 0 - 99 - - -3 14717 14660 14511 204 147 -13.08 0 0 - - 99 0 0 -3 14960 14939 14718 240 219 -7.08 0 0 - - 99 - 0 +1 14389 14881 15018 627 135 1.93 0 0 - - 99 - - +2 14942 14954 15115 171 159 0.85 0 - 0 - 99 - - 0036 -1 15186 15129 14107 1077 1020 7.05 99 - - - 99 - - 0037 +1 15019 15037 15210 189 171 -1.41 99 99 - - - - -