Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_fragilis.result/NZ_VOHT010000021.8109.AOI_02.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_fragilis.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_fragilis.result/NZ_VOHT010000021.8109.AOI_02 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_fragilis.result/NZ_VOHT010000021.8109.AOI_02.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_fragilis.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_VOHT010000021.8109.AOI_02 Sequence length = 21128 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 -3 527 299 171 354 126 -8.70 0 - 99 - - - 0 -1 687 627 475 210 150 -0.83 0 - 99 - 0 - - 0001 +2 2 77 691 687 612 11.82 99 - 99 - - - - 0002 -2 706 700 482 222 216 2.00 99 - - - - 99 - -3 914 860 738 174 120 -10.85 0 0 99 - - 0 0 0003 +2 704 716 1231 525 513 13.20 99 - 99 - - - - 0004 +2 1232 1289 1798 564 507 13.81 99 - 99 - - - - -2 1801 1750 1457 342 291 2.13 0 - 99 - - 0 - 0005 -1 2007 1971 1816 189 153 -8.25 99 - - - 99 - - +1 2107 2134 2322 213 186 -7.64 0 0 99 - 0 - - -1 2499 2301 2116 381 183 -2.59 0 0 99 - 0 - - +1 2437 2491 2643 204 150 -8.55 0 0 99 - - - - 0006 +2 1880 1901 2743 861 840 8.67 99 - 99 - - - - 0007 -1 2811 2802 2653 156 147 2.52 99 - - - 99 - - +2 2834 2870 2998 162 126 -11.17 0 - 0 99 - - 0 0008 +3 2799 2820 3056 255 234 8.49 99 - - 99 - - 0 0009 -3 3161 3125 2766 393 357 -2.11 99 - - - - - 99 0010 -2 3262 3157 3005 255 150 -0.50 96 - - - - 96 3 -2 3643 3511 3263 378 246 0.69 0 - 99 - - 0 - -1 3693 3672 3511 180 159 -0.88 0 - 99 - 0 - - -1 3981 3897 3772 207 123 -2.18 0 - 99 - 0 0 - -1 4131 4116 3982 147 132 -2.40 0 - 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