Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_fragilis.result/NZ_QSSJ010000051.7225.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_fragilis.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_fragilis.result/NZ_QSSJ010000051.7225.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_fragilis.result/NZ_QSSJ010000051.7225.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_fragilis.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_QSSJ010000051.7225.AOI_01 Sequence length = 21128 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 -1 261 168 34 225 132 -9.65 0 - 99 - 0 - - +3 153 240 374 219 132 -0.90 0 - 99 0 - 0 - -2 607 307 149 456 156 -0.40 0 - 99 0 - 0 - -1 684 528 331 351 195 -2.49 0 - 99 - 0 0 - 0001 +2 2 41 964 960 921 12.30 99 - 99 - - - - -1 1464 1452 1291 171 159 -1.24 0 - 99 - 0 0 - -3 1553 1529 1407 144 120 -4.03 0 - 99 - - 0 0 +3 1419 1515 1637 216 120 -5.11 0 - 99 0 - 0 - -1 2238 2226 2065 171 159 -1.68 0 - 99 - 0 0 - 0002 -2 2350 1294 1007 1341 285 2.59 99 - - - - 99 - -1 2436 2397 2239 195 156 -2.07 0 - 99 - 0 - - 0003 +2 1175 1187 2587 1410 1398 8.15 99 - 99 - - - - -2 2596 2473 2351 243 120 -3.78 0 - 99 - - 0 - -1 2619 2562 2437 180 123 1.94 0 - 99 - 0 0 - 0004 +3 2454 2505 2636 180 129 -1.68 99 - - 99 - - - 0005 +3 2637 2646 2981 342 333 13.50 99 - - 99 - - 0 -2 3208 3205 3020 186 183 -3.55 0 - - 99 - 0 - +1 3079 3082 3225 144 141 -6.32 0 0 - 98 - - 1 -3 3425 3386 3222 201 162 -0.41 0 - - 99 - - 0 +1 3328 3361 3507 177 144 -4.59 0 0 - 99 - - - 0006 +3 3009 3027 3791 780 762 3.53 99 - - 99 - - - 0007 -3 3893 3869 3453 438 414 1.30 99 - 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- 0 - 0018 -1 7059 7035 6775 282 258 1.11 99 - - - 99 - - -2 7330 7255 7118 210 135 3.17 5 - - 16 - 5 78 0019 +3 7122 7134 7775 651 639 4.86 99 - - 99 - - 0 0020 +1 7675 7675 7824 147 147 1.38 99 99 - - - - 0 0021 -3 7925 7334 7005 918 327 0.31 99 - - - - - 99 -1 8037 8016 7882 153 132 -2.46 0 - 99 - 0 0 - 0022 -2 8317 8197 7772 543 423 0.43 99 - - - - 99 - -1 8424 8418 8257 165 159 -7.86 0 - 99 0 0 - - +3 8163 8277 8447 282 168 -11.90 0 - 99 0 - - - +3 8448 8454 8618 168 162 -6.97 0 - 95 0 - 4 - -1 8850 8823 8683 165 138 -5.11 0 - 85 - 0 14 - +1 8695 8728 8859 162 129 -5.73 0 0 99 - - 0 - -2 8869 8749 8318 549 429 2.33 0 - 99 - - 0 - 0023 +2 7796 7805 8878 1080 1071 5.45 99 - 99 - - - - 0024 -1 9183 9123 8851 330 270 1.34 99 - - - 99 - - +2 9170 9254 9382 210 126 -3.38 0 99 0 - - - - -1 9645 9411 9283 360 126 -2.04 0 99 - - 0 - - 0025 +1 8863 8875 9849 984 972 9.87 99 99 - - - - - 0026 -1 9870 9867 9646 222 219 -0.25 99 - - - 99 - - -3 10190 10133 9960 228 171 2.57 0 - - 99 - - 0 -1 10242 10131 9988 252 141 -9.47 0 - 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0 - - 99 - +3 16194 16203 16361 165 156 -4.56 0 - - 0 - 99 - +2 16346 16358 16702 354 342 -1.57 0 - 0 - - 99 - +3 16518 16578 16742 222 162 -3.05 2 0 - 2 - 97 - 0040 -2 16876 16864 15617 1257 1245 3.42 99 - - - - 99 - +3 16998 17013 17147 147 132 -1.77 0 - 3 0 - 96 - +3 17148 17235 17357 207 120 -1.35 0 - 0 0 - 99 - 0041 +2 16811 16817 17404 591 585 2.34 99 - 99 - - - - +3 17436 17457 17618 180 159 -1.16 0 - - 0 - 99 - +2 17486 17618 17866 378 246 1.01 11 - 11 - - 88 - 0042 -2 18118 17845 16877 1239 966 4.18 99 - - - - 99 - 0043 +2 17867 17972 18124 255 150 0.77 80 19 80 - - - - -2 18295 18259 18131 162 126 -12.11 0 22 - - 77 0 - 0044 -1 18330 18309 18073 255 234 8.50 99 0 - - 99 - - 0045 +1 17968 18004 18363 393 357 2.69 99 99 - - - - - 0046 +3 18318 18327 18476 156 147 2.96 99 - - 99 - - - -3 18692 18638 18486 204 150 -7.40 0 - - - - 99 0 +3 18630 18828 19013 381 183 -3.29 0 - 2 0 - 96 0 -3 19022 18995 18807 213 186 -6.45 0 - - 3 - 96 0 +2 18827 18869 19048 219 177 -1.71 0 - 0 - - 99 - 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