Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_fragilis.result/NZ_QSRG010000041.7181.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_fragilis.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_fragilis.result/NZ_QSRG010000041.7181.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_fragilis.result/NZ_QSRG010000041.7181.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_fragilis.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_QSRG010000041.7181.AOI_01 Sequence length = 21128 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 -2 259 166 32 225 132 -7.55 0 - - 99 - 0 - +1 151 238 372 219 132 -3.68 0 0 - 99 - - 0 -3 605 305 147 456 156 0.23 0 0 - 99 - - 0 -2 682 526 329 351 195 -2.89 0 - - 99 - 0 0 0001 +3 3 39 962 957 921 12.28 99 - - 99 - - - -2 1462 1450 1289 171 159 -1.67 0 - - 99 - 0 0 -1 1551 1527 1405 144 120 -2.73 0 - - 99 0 - 0 +1 1417 1513 1635 216 120 -5.79 0 0 - 99 - - 0 -2 2236 2224 2063 171 159 -2.61 0 - - 99 - 0 0 0002 -3 2348 1292 1005 1341 285 2.85 99 - - - - - 99 -2 2434 2395 2237 195 156 -2.64 0 - - 99 - 0 - 0003 +3 1173 1185 2585 1410 1398 8.41 99 - - 99 - - - -3 2594 2471 2349 243 120 -2.21 0 - - 99 - - 0 -2 2617 2560 2435 180 123 -0.34 0 - - 99 - 0 0 0004 +1 2452 2503 2634 180 129 -1.85 99 99 - - - - - 0005 +1 2635 2644 2979 342 333 9.96 99 99 - - 0 - - -3 3206 3203 3018 186 183 -3.43 0 99 - - - - 0 +2 3077 3080 3223 144 141 -8.89 0 99 0 - 0 - - -1 3423 3384 3220 201 162 -1.23 0 99 - - 0 - - +2 3326 3359 3505 177 144 -3.12 0 99 0 - - - - 0006 +1 3007 3025 3789 780 762 8.30 99 99 - - - - - 0007 -1 3891 3840 3451 438 387 1.33 99 - 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- - - 99 - -3 7331 7256 7119 210 135 2.94 0 99 - - 0 - 0 0019 +1 7123 7135 7776 651 639 8.83 99 99 - - 0 - - 0020 +2 7676 7676 7825 147 147 0.34 99 - 99 - 0 - - 0021 -1 7926 7335 7006 918 327 -0.54 99 - - - 99 - - -2 8038 8017 7883 153 132 -0.52 0 - - 99 - 0 0 0022 -3 8318 8189 7773 543 414 -0.05 99 - - - - - 99 -2 8425 8419 8258 165 159 -9.45 0 0 - 99 - 0 - +1 8164 8278 8448 282 168 -11.64 0 0 - 99 - - - -2 8851 8824 8684 165 138 -5.00 0 - - 99 - 0 0 +2 8696 8729 8860 162 129 -5.16 0 - 0 99 - - 0 -3 8870 8750 8319 549 429 3.16 0 - - 99 - - 0 0023 +3 7797 7806 8879 1080 1071 10.09 99 - - 99 - - - 0024 -2 9184 9025 8852 330 171 -0.33 99 - - - - 99 - +3 9171 9192 9323 150 129 -7.90 0 - 99 0 - - - -2 9646 9412 9284 360 126 -0.51 0 - 99 - - 0 - 0025 +2 8864 8876 9850 984 972 10.96 99 - 99 - - - - 0026 -2 9871 9868 9647 222 219 -0.19 99 - - - - 99 - -1 10191 10134 9940 249 192 0.10 0 99 - - 0 - - -2 10243 10132 9989 252 141 -8.23 0 99 - - 0 0 - +2 10103 10202 10330 225 126 -3.61 0 99 0 - - - - +2 10451 10460 10633 180 171 -10.78 0 99 0 - 0 - - -1 10854 10803 10420 432 381 -1.93 0 99 - - 0 - - 0027 +1 9940 9991 11139 1197 1146 10.76 99 99 - - - - - -1 11286 10986 10855 429 129 3.65 0 99 - - 0 - - -3 11342 11279 11151 189 126 1.89 0 - - 99 0 - 0 -2 11374 11350 11219 153 129 -5.47 0 - - 99 - 0 - -3 11636 11636 11427 207 207 2.13 0 - - 99 - - 0 0028 +3 11082 11172 11831 747 657 6.80 99 - - 99 - - - 0029 -3 12080 12017 11832 246 183 4.07 40 59 - - - - 40 -1 12102 11973 11851 249 120 -2.55 0 28 - - 0 - 71 0030 +1 11818 11878 12231 411 351 6.62 99 99 - - - - - +2 11954 12116 12259 303 141 -5.76 0 - 0 - 95 - 3 0031 -3 12281 12263 12081 198 180 -3.09 99 - - - - - 99 0032 -1 12378 12252 12103 273 147 -2.85 88 - 1 - 88 - 10 0033 +1 12256 12256 12480 222 222 -0.88 99 99 - - - - - +1 12700 12703 12849 147 144 -1.30 0 0 - 0 - - 99 0034 +3 12339 12411 13172 831 759 -0.21 0 - - 0 - - 99 +1 13075 13303 13434 357 129 -4.03 9 9 - - 1 - 89 0035 -3 13442 13361 12330 1110 1029 10.82 99 - - - - - 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