Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_fragilis.result/NZ_CDQM010003481.4452.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_fragilis.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_fragilis.result/NZ_CDQM010003481.4452.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_fragilis.result/NZ_CDQM010003481.4452.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_fragilis.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_CDQM010003481.4452.AOI_01 Sequence length = 4243 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 0001 +3 3 9 167 162 156 3.55 99 - - 99 - 0 - +2 359 359 568 207 207 -0.13 0 - 0 - - 99 - +3 621 645 776 153 129 -7.95 0 - - 0 - 99 - +2 653 716 844 189 126 -2.93 0 0 0 - - 99 - 0002 -2 913 823 164 747 657 7.69 99 - - - - 99 - +1 709 1009 1140 429 129 -0.36 0 0 - - 99 - - -3 1544 1535 1362 180 171 -8.69 0 0 - - 99 - 0 +1 1141 1192 1575 432 381 0.52 0 0 - - 99 - - -3 1892 1793 1665 225 126 -6.33 0 - - - 99 - 0 +3 1752 1863 2006 252 141 -10.05 0 0 - 0 99 - - +1 1804 1861 2034 228 171 0.17 0 0 - - 99 - - 0003 -1 2055 2004 856 1197 1146 9.33 99 - - - 99 - - 0004 +3 2124 2127 2348 222 219 -0.26 99 - - 99 - - - +3 2466 2583 2711 243 126 -0.52 0 - - 0 - - 99 -2 2824 2740 2612 210 126 -5.08 0 - - - - 0 99 0005 -3 3131 3119 2145 984 972 9.07 99 - - - - - 99 0006 +3 2811 2970 3143 330 171 -0.19 99 - - 99 - - - -3 3299 3266 3135 162 129 -4.05 0 - 0 - - 99 0 +3 3144 3171 3311 165 138 -6.95 0 - 0 0 - 99 - -1 3546 3540 3376 168 162 -9.11 0 - 0 - 0 99 - +2 3125 3197 3676 549 477 2.69 0 - 0 - - 99 - +3 3570 3576 3737 165 159 -6.24 0 - - 0 0 99 - -1 3831 3717 3547 282 168 -10.40 0 - - - 0 99 - +3 3957 3978 4112 153 132 -4.73 0 - 0 0 - 99 - 0007 -2 4198 4189 3116 1080 1071 9.89 99 - - - - 99 - 0008 +2 3677 3716 4222 543 504 1.55 99 - 99 - - - -