{
"AOIs": [ 
{
"name": "NZ_CDQM010003481.4452.AOI_01",
"filename": "/data/pg-molgen/USERS/Vicky/Genomes_Bacteroidales/Bacteriodaceae/Bacteroides_fragilis/GCF_000009925.1_ASM992v1_genomic.fna",
"color": "gray",
"yline": 10,
"xstart": 5,
"points": [ {"x":0,"y":10}, {"x":800,"y":10} ]
}
],
"Genes": [
{
"name": "orf00001",
"orfname": "orf00001",
"gene_start": 9,
"gene_end": 167,
"gene_strand": "+",
"real_start": 4076,
"real_end": 4234 ,
"real_strand": "-",
"name": "orf00001",
"color":     "#8fbcb9",
"yline":     10,
"angle":     -60,
"xtext":     2.0740042422814,
"motifs":    "",
"function":  "DNA-directed RNA polymerase subunit alpha OS=Bacteroides fragilis (strain ATCC 25285 / DSM 2151 / JCM 11019 / NCTC 9343) OX=272559 GN=rpoA PE=3 SV=1",
"annotation":"Species='-'<br>match=85.714%|Evalue=5.62e-21<br>UniRef:<a href=http://www.uniprot.org/uniprot/sp|Q5L8D6|RPOA_BACFN>sp|Q5L8D6|RPOA_BACFN</a>",
"protein":"LKTKLVDMDLSARALNCLKAADVETLGDLVQFNKTDLLKFRNxALNSFSTYN",
"dna":"TTGAAAACTAAACTTGTCGATATGGATCTGTCAGCACGTGCCCTCAATTGCTTGAAGGCTGCTGATGTTGAAACATTGGGCGATTTGGTACAGTTCAACAAAACTGACCTGCTGAAATTCAGAAACTWAGCATTGAATTCATTTTCGACATATAAT",
"points": [{"x":0.212114070233325,"y":0},{"x":0.212114070233325,"y":2},{"x":3.53589441432948,"y":2},{"x":3.93589441432948,"y":1},{"x":3.53589441432948,"y":0}]}
,{
"name": "orf00002",
"orfname": "orf00002",
"gene_start": 164,
"gene_end": 859,
"gene_strand": "-",
"real_start": 3384,
"real_end": 4079 ,
"real_strand": "+",
"name": "orf00002",
"color":     "#d5dce8",
"yline":     10,
"angle":     -60,
"xtext":     12.0551496582607,
"motifs":    "",
"function":  "",
"annotation":"",
"protein":"MRIWTLHIVLSVLFSVFLFSCNEDDGAPYPSVRLEFLTAESGADGRLQTLVTDKGERLVVAEDRTGSELLPNSSSRVVSNYEVLSSVGGRKEIRIYALANTVSPVPLPAGEFRNGLKFDPVDMLSIWMGRDYLNMTLSIRAQNARHTFHFIQESVERDAVTGKLKVHLMLYHDDGGDVEAYAKRAYVSVPLRQYTSDIGESVIIYFSFHTYDGEVQTYQFEYVPSHLTINY",
"dna":"ATGAGAATATGGACGTTACATATCGTCCTGTCTGTATTGTTTTCCGTCTTCCTGTTTTCCTGTAACGAAGATGATGGTGCTCCTTACCCTTCCGTGAGGTTGGAGTTTCTGACTGCAGAGTCGGGAGCAGACGGTCGGTTGCAAACGTTGGTTACGGATAAGGGAGAACGTCTGGTCGTGGCGGAGGACCGCACTGGATCGGAGCTGTTACCCAATTCCTCTAGCCGTGTGGTGAGCAATTACGAAGTGCTTTCGTCGGTAGGAGGGCGGAAAGAGATACGCATTTATGCATTAGCTAATACGGTTTCTCCGGTTCCGCTGCCTGCCGGAGAGTTCCGGAATGGCTTGAAATTCGATCCGGTTGATATGCTCAGTATCTGGATGGGGCGTGATTATCTGAATATGACTCTCTCTATCCGGGCACAGAATGCGCGGCATACGTTTCATTTCATTCAGGAGTCTGTGGAGCGGGATGCTGTAACCGGAAAGCTGAAAGTCCATTTAATGCTCTATCATGACGATGGGGGAGATGTGGAGGCTTATGCCAAGCGGGCTTATGTCTCGGTACCGTTGAGGCAGTACACGTCCGATATCGGGGAATCAGTGATCATTTATTTCAGTTTTCATACGTATGACGGGGAGGTGCAGACCTATCAGTTTGAATACGTACCCAGTCACTTAACCATTAATTAC",
"points": [{"x":3.86518972425171,"y":1},{"x":4.26518972425171,"y":2},{"x":20.2451095922696,"y":2},{"x":20.2451095922696,"y":0},{"x":4.26518972425171,"y":0}]}
,{
"name": "105.3;Nigrescin",
"orfname": "orf00003",
"gene_start": 856,
"gene_end": 2004,
"gene_strand": "-",
"real_start": 2239,
"real_end": 3387 ,
"real_strand": "+",
"name": "105.3;Nigrescin",
"color":     "#70c947",
"yline":     10,
"angle":     -60,
"xtext":     33.7025689370728,
"motifs":    "",
"function":  "105.3;Nigrescin",
"annotation":"Evalue=2.00e-142 match=50.000%;",
"protein":"MNTTEFDEIRPYNDEELSGVFEELIADPAFQKVVAGVIPDVPFEMLAQKMRACRTKLEFQKTFCYGLLWKLAGDCTDGISLDHTAIPDKSKAYTYISNHRDIILDSGFLSVLLVDQGMDTVEIAIGDNLLIYPWIKKFVRVNKSFIVQRALTMRQMLESSARMSRYMHYTIGEKNQSIWIAQREGRAKDSNDRTQDSVLKMLAMGGEGDVVSRLMEMNIAPLAISYEYDPCDYLKAQEFQLKRDIEGYKKTMADDLKNMQTGLFGYKGRVHFQTGACLNDLLSTVDRSLPKPELFARISTWIDQRIHSNYRLYPGNYVAHDLLTGKNDFESHYTLAEKERFEAYVEKQLEKIEIPNKDISFLREKLLLMYANPLTNYLAARQ",
"dna":"ATGAATACAACAGAGTTTGATGAAATCCGTCCTTACAACGACGAAGAACTCTCCGGGGTTTTCGAAGAACTGATTGCCGATCCGGCTTTTCAGAAGGTGGTTGCCGGGGTGATACCGGATGTACCCTTTGAGATGCTGGCACAAAAGATGCGTGCCTGTAGAACGAAACTGGAATTTCAGAAAACCTTTTGCTACGGTTTGCTATGGAAACTTGCAGGCGACTGTACGGATGGTATTTCATTGGATCATACGGCTATTCCGGACAAGAGCAAAGCATACACCTACATCTCGAATCACCGTGACATCATTCTTGATTCCGGTTTCTTATCTGTATTGTTAGTCGACCAGGGGATGGATACGGTGGAGATTGCCATTGGCGATAATCTGCTGATTTATCCGTGGATCAAGAAGTTTGTCCGGGTCAATAAATCATTTATCGTGCAGCGTGCACTGACCATGAGGCAAATGCTTGAGTCGTCTGCCCGCATGTCCCGTTATATGCACTATACAATCGGAGAAAAGAATCAGTCCATTTGGATTGCACAACGTGAAGGACGTGCCAAAGACTCTAACGACCGTACTCAGGACAGTGTACTCAAGATGCTGGCAATGGGGGGCGAAGGGGATGTGGTCAGCCGTCTGATGGAGATGAATATTGCTCCTCTCGCTATTTCCTACGAATATGATCCCTGCGATTACCTGAAAGCACAGGAGTTCCAGCTGAAGCGTGATATAGAGGGCTATAAGAAAACGATGGCAGATGACCTGAAAAATATGCAGACCGGTTTGTTTGGCTATAAAGGCCGGGTGCATTTCCAGACGGGAGCTTGCCTCAATGACCTGCTTTCGACAGTAGATCGCTCTTTACCGAAACCGGAGTTGTTTGCACGTATCTCTACGTGGATCGATCAGCGCATTCATAGCAATTACCGTCTTTATCCGGGCAATTATGTAGCTCACGATCTGTTGACTGGTAAGAATGATTTTGAATCCCACTATACGTTGGCCGAGAAGGAACGTTTCGAGGCTTATGTGGAAAAGCAGCTTGAAAAGATAGAGATTCCCAACAAAGATATTTCTTTCTTGCGTGAAAAGCTGTTGTTGATGTATGCCAATCCGTTGACCAACTATTTGGCCGCTCGTCAA",
"points": [{"x":20.1744049021918,"y":1},{"x":20.5744049021918,"y":2},{"x":47.2307329719538,"y":2},{"x":47.2307329719538,"y":0},{"x":20.5744049021918,"y":0}]}
,{
"name": "sORF_1",
"orfname": "sORF_1",
"gene_start": 2031,
"gene_end": 2123,
"gene_strand": "+",
"real_start": 2120,
"real_end": 2212 ,
"real_strand": "-",
"name": "sORF_1",
"color":     "#d5dce8",
"yline":     10,
"angle":     -60,
"xtext":     48.9512137638463,
"motifs":    "RBS=TTCTTTTATAAACTACAA<br>",
"function":  "",
"annotation":"",
"protein":"VTSNELQVINDKLQRLHRSIPYGIGAACRLx",
"dna":"GTGACGAGCAACGAGTTACAGGTAATCAACGATAAGCTACAAAGGCTGCACCGCTCTATCCCGTACGGAATCGGTGCGGCTTGCCGACTGTAG",
"points": [{"x":47.8670751826538,"y":0},{"x":47.8670751826538,"y":2},{"x":49.6353523450389,"y":2},{"x":50.0353523450389,"y":1},{"x":49.6353523450389,"y":0}]}
,{
"name": "orf00005",
"orfname": "orf00005",
"gene_start": 2145,
"gene_end": 3119,
"gene_strand": "-",
"real_start": 1124,
"real_end": 2098 ,
"real_strand": "+",
"name": "orf00005",
"color":     "#8fbcb9",
"yline":     10,
"angle":     -60,
"xtext":     62.0315814282347,
"motifs":    "",
"function":  "D-alanine--D-alanine ligase OS=Bacteroides fragilis (strain YCH46) OX=295405 GN=ddl PE=3 SV=1",
"annotation":"Species='-'<br>match=99.383%|Evalue=0.0<br>UniRef:<a href=http://www.uniprot.org/uniprot/sp|Q64Z37|DDL_BACFR>sp|Q64Z37|DDL_BACFR</a>",
"protein":"MKRNIAIVAGGDTSEIVVSLRSAQGIYSFIDKEKYNLYIVEMEGRRWEVQLPDGSKTPVDRNDFSFMNGAEKVVFDFAYITIHGTPGEDGRLQGYFDMMRIPYSCCGVLAAAITYDKFVCNQYLKAFGVRISESLLLRQGQAVSDEDVVEKIGLPCFIKPNLGGSSFGVTKVKTREQIQPAIAKAFSEAEEVMIEAFMDGTELTCGCYKTKEKSVVFPLTEVVTHNEFFDYDAKYNGQVDEITPARISEELTRRVQTLTSAIYDILGCSGIIRVDYIITEGEKINLLEVNTTPGMTATSFIPQQVRAAGLDIKDVMTDIIENKF",
"dna":"ATGAAACGCAACATTGCCATTGTGGCAGGAGGCGATACCTCCGAAATCGTAGTTTCCCTGCGTAGTGCACAGGGCATTTACTCCTTTATCGATAAGGAGAAGTATAATTTGTACATCGTAGAAATGGAAGGTCGGCGTTGGGAAGTGCAATTGCCGGACGGAAGTAAAACACCTGTGGACAGAAACGACTTTAGTTTTATGAATGGGGCGGAGAAGGTCGTGTTCGACTTTGCTTATATCACCATTCACGGAACACCGGGAGAGGACGGACGTTTGCAGGGCTATTTCGACATGATGCGTATTCCGTATTCATGTTGTGGCGTACTGGCCGCTGCCATCACTTACGATAAATTTGTCTGCAACCAGTATCTCAAAGCATTTGGTGTGCGTATCTCCGAATCGTTGTTGCTACGTCAGGGACAGGCTGTCTCCGATGAAGATGTGGTGGAAAAAATTGGCCTGCCTTGCTTTATCAAACCCAATCTGGGAGGATCCAGCTTTGGTGTGACTAAGGTGAAGACGCGCGAACAGATTCAACCTGCCATTGCCAAGGCTTTCAGTGAAGCTGAGGAAGTGATGATAGAAGCCTTTATGGACGGAACAGAATTGACTTGCGGTTGTTATAAGACGAAAGAAAAATCGGTAGTTTTTCCGTTAACTGAGGTCGTGACACATAATGAATTCTTCGATTACGATGCAAAGTACAACGGACAGGTGGACGAGATCACTCCGGCACGTATATCGGAAGAACTGACCCGGCGTGTCCAGACTTTAACCTCGGCTATTTACGATATATTGGGATGTTCCGGCATTATTCGAGTGGACTATATCATTACGGAAGGTGAGAAGATCAATCTTCTGGAGGTGAATACCACACCGGGTATGACCGCTACCAGTTTTATTCCCCAGCAGGTGCGTGCCGCCGGACTGGATATAAAAGACGTGATGACTGATATTATAGAAAATAAATTT",
"points": [{"x":50.5538534056092,"y":1},{"x":50.9538534056092,"y":2},{"x":73.5093094508602,"y":2},{"x":73.5093094508602,"y":0},{"x":50.9538534056092,"y":0}]}
,{
"name": "orf00007",
"orfname": "orf00007",
"gene_start": 3116,
"gene_end": 4189,
"gene_strand": "-",
"real_start": 54,
"real_end": 1127 ,
"real_strand": "+",
"name": "orf00007",
"color":     "#8fbcb9",
"yline":     10,
"angle":     -60,
"xtext":     86.0829601696913,
"motifs":    "",
"function":  "Uncharacterized RNA pseudouridine synthase Cpar_0723 OS=Chlorobaculum parvum (strain NCIB 8327) OX=517417 GN=Cpar_0723 PE=3 SV=1",
"annotation":"Species='-'<br>match=47.664%|Evalue=4.89e-98<br>UniRef:<a href=http://www.uniprot.org/uniprot/sp|O50310|Y723_CHLP8>sp|O50310|Y723_CHLP8</a>",
"protein":"MIEELPDDIEQDELDDIEPVGDENQLYEHFRVVVDKGQAMVRVDKYLFERIVNASRNRIQKAAEDGFVMANGKPVKSSYKVKPLDVITVMMDRPRYDNEIIPEDIPLHIVYEDKYLMVVNKPAGLVVHPGHGNYHGTLVNAIAWHLKDNPDYDANDPHVGLVHRIDKDTSGLLVIAKTPDAKTNLGVQFFNKTTKRRYRALVWGIVDQDEGTIVGSIARNPKDRMQMAVMADPTQGKHAVTHYRVLERLGYVTLVECILETGRTHQIRVHMKHIGHVLFNDERYGGHEILKGTHFSKYKQFVNNCFDTCPRQALHAMTLGFVHPVTGEEMHFTSELPDDMTRLIEKWRGYISNRDLE",
"dna":"ATGATAGAAGAATTGCCTGACGATATTGAACAGGACGAATTGGATGATATAGAACCCGTAGGTGACGAAAACCAGCTCTATGAACATTTCCGCGTGGTAGTGGATAAAGGGCAGGCAATGGTCAGGGTCGATAAATATTTGTTTGAACGCATCGTCAATGCTTCGCGCAATCGCATACAGAAAGCGGCTGAAGACGGTTTTGTCATGGCCAATGGTAAACCGGTGAAGAGCAGCTATAAAGTGAAACCTCTGGATGTGATTACGGTGATGATGGATCGTCCCCGTTATGACAATGAGATTATTCCGGAGGATATTCCACTTCATATTGTCTATGAAGATAAATACCTGATGGTGGTGAATAAGCCGGCCGGACTGGTGGTGCATCCGGGACACGGAAACTATCATGGTACGTTGGTCAATGCCATCGCTTGGCATCTCAAGGATAACCCCGATTACGATGCCAACGACCCACATGTGGGATTGGTGCACCGCATCGATAAAGATACTTCTGGATTACTGGTTATCGCTAAGACACCGGATGCCAAAACCAATCTGGGCGTCCAATTCTTTAATAAAACTACTAAGCGTAGATACCGCGCACTGGTATGGGGCATTGTCGATCAGGATGAAGGTACCATCGTAGGCAGTATTGCCCGCAATCCGAAAGACCGGATGCAAATGGCCGTTATGGCCGATCCTACCCAAGGGAAACATGCCGTCACCCATTACCGGGTGCTTGAACGTCTGGGATATGTCACTTTGGTGGAATGTATTCTTGAAACCGGGCGTACGCATCAGATACGTGTGCACATGAAGCATATCGGTCATGTACTCTTCAATGACGAGCGGTATGGCGGTCACGAAATCCTGAAAGGGACTCACTTTAGTAAATACAAACAATTTGTAAACAATTGCTTCGACACTTGTCCGCGGCAGGCTTTGCACGCCATGACGCTGGGGTTTGTGCATCCCGTCACTGGCGAAGAGATGCATTTTACTTCGGAGTTGCCGGACGACATGACCCGGTTGATAGAGAAGTGGAGAGGTTATATTAGTAACAGAGATTTAGAA",
"points": [{"x":73.4386047607825,"y":1},{"x":73.8386047607825,"y":2},{"x":98.7273155786,"y":2},{"x":98.7273155786,"y":0},{"x":73.8386047607825,"y":0}]}
]}