Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_fragilis.result/NZ_CAEUHN0100000011.8761.AOI_02.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_fragilis.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_fragilis.result/NZ_CAEUHN0100000011.8761.AOI_02 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_fragilis.result/NZ_CAEUHN0100000011.8761.AOI_02.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_fragilis.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_CAEUHN0100000011.8761.AOI_02 Sequence length = 21128 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 0001 +2 2 26 190 186 162 5.76 99 - 99 - - - - -1 657 609 451 204 156 -5.25 0 - 99 - 0 0 - 0002 +2 218 248 757 537 507 13.19 99 - 99 - - - - -2 775 544 269 504 273 0.17 0 - 99 - - 0 - +3 774 801 941 165 138 -5.71 1 - - 1 98 - - 0003 -1 1080 1080 799 279 279 0.13 99 - - - 99 - - +3 1068 1074 1292 222 216 -9.80 0 99 - 0 - - 0 -3 1460 1142 1002 456 138 1.35 0 99 - - - - 0 +3 1398 1452 1637 237 183 -10.20 0 99 - 0 0 0 - -1 1653 1461 1120 531 339 0.33 0 99 - - 0 - 0 0004 +1 850 862 1704 852 840 8.38 99 99 - - - - - 0005 -3 1772 1763 1560 210 201 1.09 99 - - - - - 99 0006 -1 1920 1884 1741 177 141 -1.33 99 - - - 99 - - 0007 +2 1760 1781 2017 255 234 6.44 99 - 99 - - - - -1 2097 2097 1966 129 129 -2.06 2 0 - - 2 97 - 0008 -2 2110 2044 1856 252 186 3.88 99 - - - - 99 - 0009 -2 2299 2266 2111 186 153 -0.19 99 - - - - 99 - -1 2469 2346 2191 276 153 -3.79 0 - 99 - 0 - - +1 2488 2566 2724 234 156 -10.03 0 0 99 - 0 - - -1 2802 2676 2548 252 126 0.16 0 0 99 - 0 - - -1 3264 3120 2803 459 315 -0.39 0 - 99 - 0 0 - 0010 +2 2156 2183 3289 1131 1104 8.59 99 - 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- - - 99 - 0053 +3 20802 20928 21116 312 186 -1.36 99 - - 99 - - -