Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_fragilis.result/NZ_CAAKNW0100001011.8751.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_fragilis.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_fragilis.result/NZ_CAAKNW0100001011.8751.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_fragilis.result/NZ_CAAKNW0100001011.8751.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_fragilis.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_CAAKNW0100001011.8751.AOI_01 Sequence length = 16312 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 +1 1 16 321 318 303 1.75 0 0 0 - 99 - - +2 2 200 376 372 174 0.46 0 - 0 - 99 - - +2 605 626 760 153 132 -1.21 0 0 0 - 99 - 0 -3 764 758 606 156 150 -7.88 0 0 0 - 99 0 0 +1 322 373 801 477 426 2.20 0 0 - - 99 - - -3 962 935 798 162 135 -13.64 0 - - - 99 0 0 -2 997 940 755 240 183 -8.73 0 - - - 99 0 - +1 814 895 1041 225 144 -1.08 0 0 65 - 34 - - 0001 +2 893 941 1117 222 174 2.36 99 - 99 - - - - -3 1457 1418 1293 162 123 -11.87 0 - - - 99 - 0 +2 1343 1475 1600 255 123 -1.37 0 0 0 - 99 - - +1 1324 1429 1824 498 393 -0.86 0 0 - - 99 - - +3 1617 1710 1883 264 171 -13.49 0 - - 0 99 0 - +1 1825 1828 1986 159 156 0.58 0 0 - - 99 0 - -3 2177 2108 1971 204 135 -4.28 0 - - - 99 - 0 +1 1987 2356 2538 549 180 1.04 0 0 - - 99 - - +2 2444 2468 2611 165 141 -3.35 0 - 0 - 99 0 - +1 2839 2917 3183 342 264 -0.39 0 0 - - 99 - - 0002 -1 3213 3195 1051 2160 2142 10.59 99 - - - 99 - - 0003 -2 3256 3253 3119 135 132 2.98 91 - 0 8 - 91 - 0004 +2 3014 3029 3334 318 303 -4.25 99 - 99 - - - - 0005 +3 3066 3171 3404 336 231 -1.91 99 - - 99 - - - +2 3419 3464 3592 171 126 -9.28 0 - 0 0 - - 99 -2 3757 3724 3596 159 126 -7.02 0 - - 0 - 0 99 +3 3468 3558 3806 336 246 2.03 0 - - 0 - - 99 0006 -3 3902 3896 3225 675 669 8.55 99 - - - - - 99 0007 +1 3757 3865 4140 381 273 1.09 99 99 - - - - - -2 4345 4330 4202 141 126 -5.04 0 - - - - 0 99 +1 4297 4393 4530 231 135 -0.70 0 0 - 0 - - 99 +3 4377 4380 4577 198 195 4.25 0 - - 0 - - 99 0008 -3 4775 4754 3903 870 849 8.51 99 - - - - - 99 0009 +2 4769 4769 4891 120 120 -4.75 99 - 99 - - - - +2 5099 5201 5359 258 156 0.41 0 - 0 - 99 - - +2 5630 5636 5764 132 126 -4.26 0 - 0 - 99 - - +2 5765 5933 6085 318 150 0.05 0 - 0 - 99 - - +2 6131 6155 6286 153 129 -3.48 0 - 0 - 99 - - 0010 -1 6369 6315 4795 1572 1518 8.40 99 - - - 99 - - 0011 +2 6425 6425 6565 138 138 1.83 99 - 99 - - - - 0012 +3 6591 6594 6746 153 150 -3.02 99 - - 99 - - - 0013 -3 6827 6764 6606 219 156 -0.45 99 - - - - - 99 0014 +3 6930 6939 7073 141 132 1.46 77 - 22 77 - - - -2 7225 7219 7013 210 204 0.34 0 - 99 - - 0 - 0015 +2 6821 6953 7237 414 282 5.20 99 - 99 - - - - -2 7564 7501 7361 201 138 -10.41 0 99 - - 0 0 - +2 7370 7484 7618 246 132 -5.09 0 99 0 - 0 - - -3 7751 7691 7533 216 156 1.61 0 99 - - 0 - 0 0016 -1 7881 7446 7234 645 210 1.91 99 - - - 99 - - +3 7725 7827 7949 222 120 -12.86 0 99 - 0 - - 0 -3 7994 7880 7752 240 126 3.41 0 99 - 0 0 - 0 -3 8129 8129 7998 129 129 -4.08 0 99 - - 0 - 0 -1 8139 8133 7894 243 237 -0.16 0 99 - - 0 - - 0017 +1 7279 7285 8193 912 906 9.81 99 99 - - - - - 0018 -2 8392 8293 8126 264 165 1.82 99 - - - - 99 - 0019 +3 8232 8271 8453 219 180 -5.40 99 - - 99 - - - +3 8514 8532 8654 138 120 -3.65 0 99 - 0 - - - 0020 +1 8530 8554 8676 144 120 4.31 99 99 - - - - - 0021 +3 8703 8727 8852 147 123 3.64 43 - - 43 - - 56 0022 -3 8867 8843 8712 153 129 5.06 64 - - 35 - - 64 -1 9303 9282 8896 405 384 0.52 0 - 99 - 0 - - -1 9450 9450 9316 132 132 -4.79 0 - 99 - 0 0 - -2 9700 9691 9530 168 159 2.33 0 - 99 - - 0 0 -3 9728 9704 9525 201 177 -9.40 0 - 99 - - - 0 -1 10125 9732 9601 522 129 -1.02 0 - 99 - 0 - 0 -1 10392 10377 10126 264 249 -1.03 0 - 99 - 0 - - 0023 +2 8846 8870 10468 1620 1596 11.22 99 - 99 - - - - 0024 +2 10529 10544 10669 138 123 2.75 59 - 59 - - 40 - 0025 -2 10741 10708 10241 498 465 -1.18 99 - - - - 99 - -2 10903 10891 10742 159 147 -3.17 0 - - 99 - 0 0 -3 11225 11069 10917 306 150 2.04 0 - - 99 - - 0 -1 11292 11229 11080 210 147 -12.98 0 - - 99 0 - 0 0026 +3 10623 10638 11318 693 678 9.10 99 - - 99 - - - -1 11532 11478 11332 198 144 1.49 0 - 99 - 0 0 - +1 11338 11338 11538 198 198 -6.02 0 0 99 - - 0 - -2 11557 11311 11189 366 120 -0.58 0 - - 99 - 0 - -1 11790 11655 11533 255 120 2.41 0 - 99 - 0 - - -2 11923 11878 11597 324 279 -2.58 0 0 99 - - 0 - -1 12054 12039 11815 237 222 3.52 0 0 99 - 0 - - +1 11539 12022 12201 660 177 -8.75 0 0 99 - - - - -1 12558 12552 12409 147 141 -0.18 0 - 99 - 0 0 - 0027 +2 11297 11315 12844 1545 1527 11.14 99 - 99 - - - - 0028 -2 12901 12847 12191 708 654 1.00 99 - - - - 99 - -1 12933 12795 12646 285 147 -1.54 0 - 99 - 0 0 - -1 13395 13341 13207 186 132 -4.30 0 - 0 99 0 - 0 +2 13094 13139 13408 312 267 -6.53 0 - 0 99 - - - -2 13471 13441 13283 186 156 -3.89 0 - - 99 - 0 - -2 13777 13723 13529 246 192 -0.76 0 - 0 99 - 0 0 -3 13904 13505 13368 534 135 3.49 0 - - 99 - - 0 +2 13418 13733 13960 540 225 -4.28 0 - 0 99 - - - 0029 +3 12972 12996 14183 1209 1185 10.18 99 - - 99 - - - 0030 -1 14214 14205 14056 156 147 -2.93 12 - - - 12 1 85 0031 -2 14263 14254 14048 213 204 -1.34 95 - - - - 95 4 -3 14387 14156 13905 480 249 0.20 0 - - 99 - - 0 +3 14409 14424 14546 135 120 -4.89 0 99 - 0 - - - 0032 +1 14359 14587 14757 396 168 2.19 99 99 - - 0 - - 0033 -1 14781 14595 14458 321 135 -1.26 23 76 - - 23 - - 0034 +2 14615 14654 14803 186 147 -6.84 99 - 99 - - - - -1 14973 14934 14812 159 120 -1.03 0 - 99 - 0 0 - -1 15336 15243 15034 300 207 3.20 0 - 99 - 0 0 - +3 15258 15315 15470 210 153 -6.57 0 0 99 0 - 0 - +1 15304 15343 15543 237 198 -10.22 0 0 99 - - 0 - -1 15663 15570 15439 222 129 -1.87 0 - 99 - 0 0 - +3 15657 15660 15812 153 150 -0.36 0 - 99 0 - 0 - 0035 -2 15829 15034 14786 1041 246 1.33 99 - - - - 99 - -3 16061 16049 15912 147 135 -5.72 0 - 97 - - 2 0 -2 16312 16297 15830 480 465 6.12 0 - 99 - - 0 -