Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_fragilis.result/NC_0032283.2.AOI_02.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_fragilis.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_fragilis.result/NC_0032283.2.AOI_02 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_fragilis.result/NC_0032283.2.AOI_02.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_fragilis.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NC_0032283.2.AOI_02 Sequence length = 21128 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 -1 255 162 28 225 132 -8.28 0 - 99 - 0 - - +3 147 234 368 219 132 -2.78 0 - 99 0 - 0 - -2 601 301 143 456 156 -0.02 0 - 99 0 - 0 - -1 678 522 325 351 195 -2.76 0 - 99 - 0 0 - 0001 +2 2 35 958 954 921 12.05 99 - 99 - - - - -1 1458 1446 1285 171 159 -1.34 0 - 99 - 0 0 - -3 1547 1523 1401 144 120 -2.60 0 - 99 - - 0 0 +3 1413 1509 1631 216 120 -4.41 0 - 99 0 - 0 - -1 2232 2220 2059 171 159 -0.38 0 - 99 - 0 0 - 0002 -2 2344 1288 1001 1341 285 2.68 99 - - - - 99 - -1 2430 2391 2233 195 156 -2.36 0 - 99 - 0 - - 0003 +2 1169 1181 2581 1410 1398 8.14 99 - 99 - - - - -2 2590 2467 2345 243 120 -2.23 0 - 99 - - 0 - -1 2613 2556 2431 180 123 -0.13 0 - 99 - 0 0 - 0004 +3 2448 2499 2630 180 129 -1.47 99 - - 99 - - - 0005 +3 2631 2640 2975 342 333 9.48 99 - - 99 - - 0 -2 3202 3199 3014 186 183 -3.01 0 - - 99 - 0 - +1 3073 3076 3219 144 141 -7.91 0 0 - 99 - - 0 -3 3419 3380 3216 201 162 -1.27 0 - - 99 - - 0 +1 3322 3355 3501 177 144 -2.91 0 0 - 99 - - - 0006 +3 3003 3021 3785 780 762 8.07 99 - - 99 - - - +1 3670 3670 3822 150 150 -5.42 0 0 - - - - 99 -3 3830 3779 3447 381 330 1.33 0 - - 99 - - 0 +2 3755 3869 4018 261 147 -6.50 0 - 0 - - 99 - +1 4279 4279 4485 204 204 -10.76 0 0 - 0 - 99 - 0007 -2 4510 4507 3815 693 690 9.27 99 - - - - 99 - +3 4164 4257 4514 348 255 0.18 0 - - 0 - 99 - 0008 -3 4553 4547 4410 141 135 -3.39 99 - - - - - 99 0009 -1 4797 4734 4504 291 228 -2.45 99 - - - 99 - - -3 4907 4766 4578 327 186 -6.88 0 - - - 0 99 0 +2 4802 4823 5035 231 210 4.12 0 - 0 - - 99 - +3 4860 4896 5042 180 144 0.37 0 - - 0 - 99 - +3 5151 5172 5324 171 150 -1.39 0 - 0 0 - 99 - +2 5036 5162 5422 384 258 0.98 0 - 0 - - 99 - 0010 -2 5608 5563 4550 1056 1011 9.79 99 - - - - 99 - 0011 +1 5557 5572 5775 216 201 -3.22 99 99 - - - - - 0012 -2 5812 5773 5630 180 141 0.57 99 0 - - - 99 - 0013 +3 5730 5778 5927 195 147 -3.49 15 - - 15 - - 84 0014 -3 6032 5837 5658 372 177 -3.43 99 - - - - - 99 0015 +1 5890 5911 6069 177 156 -2.55 99 99 - - - - - +2 6101 6296 6574 471 276 4.59 0 - 0 - - 99 - 0016 -2 6580 6568 6002 576 564 13.12 99 - - - - 99 - 0017 +1 6592 6610 6732 138 120 -3.32 99 99 - - - - - 0018 +3 6747 6762 6923 174 159 2.53 99 - - 99 - - 0 0019 -2 7060 7000 6776 282 222 0.06 99 - - - - 99 - -3 7331 7256 7119 210 135 3.22 0 99 - - 0 - 0 0020 +1 7123 7135 7776 651 639 8.50 99 99 - - 0 - - 0021 +2 7676 7676 7825 147 147 -0.40 98 - 98 - 1 - - 0022 -1 7926 7335 6985 939 348 -1.33 99 - - - 99 - - -2 8038 8017 7883 153 132 -0.82 0 - - 99 - 0 0 0023 -3 8318 8129 7773 543 354 -0.28 99 - - - - - 99 -2 8425 8419 8258 165 159 -11.48 0 0 - 99 - 0 - +1 8164 8278 8448 282 168 -11.28 0 0 - 99 - - - +1 8449 8455 8619 168 162 -6.02 0 0 - 99 - - 0 -2 8851 8824 8684 165 138 -3.99 0 - - 79 - 0 20 +2 8696 8729 8860 162 129 -5.24 0 - 0 99 - - 0 -3 8870 8750 8319 549 429 2.44 0 - - 99 - - 0 0024 +3 7797 7806 8879 1080 1071 5.99 99 - - 99 - - - 0025 -2 9184 9025 8852 330 171 0.45 99 - - - - 99 - +3 9171 9258 9383 210 123 -4.66 0 - 99 0 - - - -2 9646 9412 9284 360 126 -1.23 0 - 99 - - 0 - 0026 +2 8864 8876 9850 984 972 10.80 99 - 99 - - - - 0027 -2 9871 9868 9647 222 219 -0.23 99 - - - - 99 - -1 10191 10134 9961 228 171 2.44 0 99 - - 0 - - -2 10243 10132 9989 252 141 -8.34 0 99 - - 0 0 - +2 10103 10202 10330 225 126 -2.08 0 99 0 - - - - +2 10451 10460 10633 180 171 -10.07 0 99 0 - 0 - - -1 10854 10803 10420 432 381 -2.95 0 99 - - 0 - - 0028 +1 9940 9991 11139 1197 1146 10.44 99 99 - - - - - -1 11286 10986 10855 429 129 3.04 0 99 - - 0 - - -3 11342 11279 11151 189 126 2.05 0 - - 99 0 - 0 -2 11374 11350 11219 153 129 -5.89 0 - - 99 - 0 - -3 11636 11636 11427 207 207 1.92 0 - - 99 - - 0 0029 +3 11082 11172 11831 747 657 6.45 99 - - 99 - - - -3 12080 12017 11832 246 183 3.53 0 99 - - - - 0 -1 12102 11973 11851 249 120 -3.01 0 99 - - 0 - 0 0030 +1 11818 11836 12231 411 393 9.53 99 99 - - - - - +2 11954 12116 12259 303 141 -5.13 2 - 2 - 90 - 7 0031 -3 12281 12263 12081 198 180 -2.70 99 - - - - - 99 0032 -1 12378 12252 12103 273 147 -2.71 79 - 2 - 79 - 18 0033 +1 12256 12256 12480 222 222 -0.37 99 99 - - - - - +1 12700 12703 12849 147 144 -1.83 0 0 - 0 - - 99 0034 +3 12339 12411 13172 831 759 -0.79 0 - 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0 - - 99 - +2 16013 16145 16345 330 198 1.81 0 - 0 - - 99 - +3 16194 16203 16361 165 156 -3.27 0 - - 0 - 99 - +2 16346 16358 16702 354 342 -2.01 0 - 0 - - 99 - +3 16518 16617 16742 222 123 -2.95 0 0 - 0 - 99 - 0039 -2 16876 16864 15617 1257 1245 4.53 99 - - - - 99 - +3 16998 17013 17147 147 132 -3.83 0 - 0 0 - 99 - +3 17148 17232 17357 207 123 -2.68 0 - 0 0 - 99 - 0040 +2 16811 16817 17404 591 585 0.64 99 - 99 - - - - +3 17436 17457 17618 180 159 -1.17 0 - - 0 - 99 - +2 17486 17618 17866 378 246 0.95 0 - 0 - - 99 - 0041 -2 18118 17959 16877 1239 1080 5.69 99 - - - - 99 - 0042 +2 17867 17972 18124 255 150 -0.03 99 0 99 - - - - -2 18295 18259 18131 162 126 -11.72 0 0 - - 99 0 - 0043 -1 18330 18309 18073 255 234 8.68 99 0 - - 99 - - 0044 +1 17968 18004 18363 393 357 -2.36 99 99 - - - - - 0045 +3 18318 18327 18476 156 147 3.07 99 - - 99 - - - -3 18692 18638 18486 204 150 -8.06 0 - - - - 99 0 +3 18630 18828 19013 381 183 -2.50 0 - - 0 - 99 0 -3 19022 18995 18807 213 186 -7.56 0 - - 0 - 99 0 0046 -2 19249 19228 18386 861 840 8.77 99 - - - - 99 - 0047 +3 19122 19158 19313 189 153 -8.12 99 - - 99 - - - +2 19328 19379 19672 342 291 2.14 0 - 0 - - 99 - 0048 -2 19897 19840 19331 564 507 13.51 99 - - - - 99 - +1 20215 20269 20391 174 120 -10.57 0 0 0 - - 99 0 0049 -2 20425 20413 19898 525 513 13.13 99 - - - - 99 - 0050 +2 20423 20429 20647 222 216 2.28 99 - 99 - - - - +3 20442 20502 20654 210 150 -0.88 0 - - 0 - 99 - +1 20602 20830 20958 354 126 -8.53 0 0 - - - 99 - 0051 -2 21127 21052 20438 687 612 11.82 99 - - - - 99 -