Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_fluxus.result/NZ_GL8826891.52.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_fluxus.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_fluxus.result/NZ_GL8826891.52.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_fluxus.result/NZ_GL8826891.52.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_fluxus.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_GL8826891.52.AOI_01 Sequence length = 21143 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 +1 280 358 576 294 216 -3.21 0 0 - 99 - - - -2 802 568 440 360 126 -2.98 0 0 - 99 - 0 - -1 810 780 643 165 135 -11.70 0 - - 99 0 0 0 +1 691 739 942 249 201 -6.61 0 0 - 99 - - 0 -2 967 934 803 162 129 -10.39 0 0 - 99 - 0 0 0001 +3 3 96 1085 1080 987 13.20 99 - - 99 - - - -3 1094 971 447 645 522 0.76 0 - - 99 - - 0 -3 1541 1496 1341 198 153 -0.01 0 99 - 0 0 - 0 +2 1427 1523 1645 216 120 -19.44 0 99 0 - 0 - - +2 1646 1646 1768 120 120 -7.24 0 99 0 - 0 - - +2 1769 1841 1966 195 123 -8.77 0 99 0 - 0 - - -3 2141 2075 1935 204 138 -0.63 0 99 - - 0 - 0 0002 -1 2241 1242 1066 1173 174 -1.26 99 - - - 99 - - +2 2510 2516 2638 126 120 -12.50 0 99 0 - 0 - 0 0003 +1 1249 1273 2661 1410 1386 13.67 99 99 - - - - - 0004 -3 2717 2696 2463 252 231 1.52 99 - - - 0 - 99 -1 2739 2442 2278 459 162 -3.33 0 99 - - 0 - - 0005 -1 3000 2982 2773 225 207 11.79 99 - - - 99 - - +2 3191 3221 3448 255 225 2.25 0 - 0 - - 99 - +3 3318 3357 3500 180 141 -11.66 0 - - 0 - 99 - -1 3525 3513 3379 144 132 -8.00 0 - - - 0 99 - +2 3449 3488 3652 201 162 2.33 0 - 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99 0016 +3 6309 6444 6809 498 363 2.00 99 - - 99 - - - 0017 -1 7011 6939 6778 231 159 -1.58 99 - - - 99 - - 0018 +1 6829 6835 7083 252 246 1.45 99 99 - - - - - 0019 -3 7091 7088 6936 153 150 -7.12 99 - - - - - 99 0020 -1 7278 7194 7012 264 180 -3.76 99 - - - 99 - - 0021 -2 7825 7450 7148 675 300 0.51 99 - - - - 99 - 0022 +2 7202 7250 7891 687 639 10.87 99 - 99 - - - - -1 8664 8664 8536 126 126 -6.80 0 - 99 - 0 0 0 0023 -2 8881 8824 7892 987 930 0.82 99 - - - - 99 - +1 8833 8854 8976 141 120 -9.41 0 0 91 - 8 - - -1 8988 8961 8821 165 138 -1.60 10 - 89 - 10 - - 0024 +2 7916 7943 9016 1098 1071 6.39 99 - 99 - - - - -3 9257 9254 9090 165 162 -3.45 0 99 0 - 0 - 0 +2 9038 9272 9418 378 144 -4.98 0 99 0 - 0 - 0 -3 9425 9386 9258 165 126 -6.94 0 99 0 - 0 - 0 -3 9632 9563 9426 204 135 3.91 0 99 - 0 0 - 0 0025 -1 9753 9378 8989 762 387 -0.69 99 - - - 99 - - 0026 +1 9001 9013 9993 990 978 11.01 99 99 - - - - - -1 9996 9921 9754 240 165 -3.71 0 99 - - 0 - - +2 10133 10157 10303 168 144 -9.19 0 - 0 99 0 - 0 +1 10393 10420 10542 147 120 -13.79 0 0 - 99 - - 0 -2 10741 10672 10505 234 165 -1.97 0 - - 99 - 0 0 -1 10797 10755 10579 216 174 -13.86 0 - - 99 0 - 0 +1 10909 10960 11106 195 144 -2.44 0 0 - 99 0 - 0 0027 +3 9990 9999 11153 1161 1152 11.87 99 - - 99 - - 0 0028 -3 11159 11018 9990 1167 1026 -1.70 0 - - 99 - - 0 -1 11289 11145 10924 363 219 -9.45 0 - - 99 0 - 0 -3 11378 11300 11166 210 132 -2.35 0 - - 99 - - 0 -3 11648 11627 11400 246 225 -0.48 0 - - 99 - - 0 -3 11849 11804 11649 198 153 1.76 0 - - 99 - - 0 0029 +3 11154 11184 11858 702 672 8.91 99 - - 99 - - - -3 12104 12041 11901 201 138 -0.49 0 - - 99 0 0 0 -2 12130 12058 11855 273 201 -1.81 0 - - 99 0 0 - +1 11983 12052 12177 192 123 -8.44 0 0 - 99 - - - 0030 +3 11859 11859 12257 396 396 10.39 99 - - 99 - - - 0031 -2 12319 12316 12131 186 183 -8.46 99 - - - - 99 - 0032 +1 12178 12304 12528 348 222 0.21 99 99 - - - - - +3 12588 12807 12935 345 126 -6.97 0 0 - 0 - - 99 +1 12748 12850 12972 222 120 -4.02 0 0 - - - - 99 +1 13030 13201 13377 345 174 -2.42 0 0 - 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