Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_faecis.result/NZ_AGDG010000151.44.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_faecis.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_faecis.result/NZ_AGDG010000151.44.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_faecis.result/NZ_AGDG010000151.44.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_faecis.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_AGDG010000151.44.AOI_01 Sequence length = 21128 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 0001 +1 1 145 339 336 192 3.33 99 99 - - - - - 0002 +1 415 421 717 300 294 -2.65 99 99 - - - - - -1 843 804 676 165 126 3.13 0 - 0 0 0 99 - +3 633 669 863 228 192 -4.67 0 - 0 0 - 99 - +2 602 653 895 291 240 -1.11 0 - 0 - - 99 - +1 718 826 1008 288 180 -4.02 0 0 - - - 99 - -3 1205 1202 972 231 228 -4.99 0 - - - - 99 0 +2 1025 1286 1549 522 261 -0.75 0 - 0 - - 99 - +2 1550 1556 1786 234 228 -0.15 0 - 0 - - 99 - -1 1995 1911 1783 210 126 -8.96 0 - 0 - 0 99 - +2 1787 1796 2032 243 234 -2.17 0 - 0 - - 99 - +3 2058 2094 2231 171 135 1.89 0 - - 0 - 99 - 0003 -2 2413 2329 431 1980 1896 8.94 99 - - - - 99 - +1 2695 2704 2832 135 126 -5.59 0 0 - 99 - - 0 -2 2965 2932 2795 168 135 -3.26 0 - - 99 - 0 0 -3 3113 2711 2565 546 144 4.26 0 - - 99 - - 0 -2 3199 3133 3008 189 123 4.35 0 - - 99 - 0 - +2 3533 3584 3721 186 135 4.64 0 - 0 99 0 - 0 -3 3773 3638 3390 381 246 0.13 0 - - 99 - - 0 -3 4121 4109 3876 243 231 2.44 0 - - 99 - - 0 0004 +3 2409 2424 4127 1716 1701 12.09 99 - - 99 - - - 0005 -1 4269 4269 4147 120 120 -9.41 14 5 16 - 14 2 61 0006 -3 4307 4304 4122 183 180 -5.63 97 2 - - - - 97 +1 4120 4171 4314 192 141 -5.54 8 8 91 - - - - 0007 +2 4151 4247 4402 249 153 1.86 99 - 99 - - - - 0008 -3 4454 4433 4311 141 120 0.51 24 75 - - - - 24 +1 4315 4567 4719 402 150 -1.92 0 0 0 - 99 - - +2 4481 4520 4741 258 219 -0.85 0 - 0 - 99 - - +2 4862 4898 5020 156 120 0.26 0 0 0 - 99 - - 0009 +1 4720 4732 5709 987 975 0.13 0 0 - - 99 - - -2 5818 5767 5567 249 198 -4.08 0 - - - 99 0 - 0010 -1 5841 5730 4330 1509 1398 8.37 99 - - - 99 - - 0011 +3 5697 5709 5858 159 147 -0.10 99 - - 99 - - - +3 5859 5871 5996 135 123 1.61 0 - - 0 - 99 - 0012 -2 6421 6400 5834 585 564 13.58 99 - - - - 99 - 0013 +2 5933 6131 6472 537 339 5.03 99 - 99 - - - - 0014 +2 6578 6593 6754 174 159 3.71 99 - 99 - - - - -1 6783 6738 6607 174 129 -4.19 0 - 99 - 0 - - 0015 +3 6720 6729 6878 156 147 3.73 99 0 - 99 - - - 0016 +1 6733 6748 6882 147 132 -3.93 99 99 - - - - - 0017 -3 7106 7103 6981 123 120 -2.71 33 - 66 - - - 33 0018 +2 6968 6977 7129 159 150 -0.17 99 - 99 - - - - 0019 -2 7282 7231 7100 180 129 4.17 99 - - - - 99 - -3 7652 7295 7152 498 141 -1.93 0 - - 99 - - 0 0020 +3 7137 7167 7817 678 648 7.82 99 - - 99 - - - -2 7963 7960 7814 147 144 -8.07 0 - - - 99 0 - -2 8410 8377 8162 246 213 -7.27 0 99 - - 0 0 - -3 8564 8531 8391 171 138 -3.16 0 99 - - 0 - 0 -3 8888 8819 8691 195 126 -7.11 0 90 - - 9 - 0 0021 +1 7825 7843 8916 1089 1071 5.93 99 99 - - 0 - - 0022 -1 8928 7929 7741 1185 186 3.48 99 - - - 99 - - -2 9145 9097 8960 183 135 -0.01 0 - - 99 - 0 0 0023 -3 9311 9161 8889 420 270 3.57 99 - - - - - 99 -3 9518 9449 9312 204 135 0.06 0 - - 99 - - 0 -2 9532 9457 9326 204 129 -0.44 0 - - 99 - 0 0 0024 +3 8901 8913 9887 984 972 11.13 99 - - 99 - - - -3 9890 9680 9519 369 159 -2.31 0 - - 99 - - 0 +3 10062 10062 10202 138 138 3.12 0 - 99 0 - 0 0 0025 -2 10243 10213 9980 261 231 1.80 99 - - - - 99 - -3 10292 10175 9996 294 177 -0.62 0 - 99 - - 0 0 +3 10443 10458 10586 141 126 -9.34 0 - 99 0 - 0 - -2 10615 10492 10244 369 246 0.81 0 - 99 - - 0 - -1 10704 10659 10492 210 165 -3.11 0 - 99 - 0 - - -3 10757 10697 10518 237 177 -11.21 0 - 99 - 0 - 0 -2 10840 10801 10661 177 138 3.15 0 - 99 - - 0 - -3 11012 10991 10821 189 168 -2.79 0 - 99 - - - 0 -2 11086 11032 10841 243 189 0.43 0 - 99 - - 0 - 0026 +2 9986 9989 11137 1149 1146 11.12 99 - 99 - - - - -3 11372 11351 11217 153 132 -1.31 0 99 - - - - 0 -1 11607 11577 11332 273 243 -3.43 0 99 - - 0 - - -3 11672 11651 11523 147 126 -7.29 0 99 - - - - 0 +2 11549 11552 11707 156 153 -7.90 0 99 0 - - - - -1 11796 11766 11608 186 156 -1.74 0 99 - - 0 - - 0027 +1 11065 11134 11847 780 711 9.89 99 99 - - - - - -2 12250 12115 11978 270 135 0.17 0 - - 99 - 0 - 0028 +3 11841 11844 12254 411 408 8.06 99 - - 99 - - - 0029 -3 12311 12290 12099 210 189 2.32 99 - - - - - 99 +1 12709 12712 12903 192 189 1.48 0 0 - 0 - - 99 -2 12997 12961 12830 165 129 -3.50 0 - - 0 - 0 99 +3 12672 12900 13094 420 192 -1.98 0 - - 0 - - 99 0030 -3 13313 13307 12342 969 963 11.38 99 - - - - - 99 0031 +1 12991 13162 13503 510 339 0.57 99 99 - - - - - +2 13430 13523 13696 264 171 3.01 0 - 0 - 99 - - -3 13799 13793 13671 126 120 -5.39 0 - 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- - 0 - -3 16775 16775 16632 141 141 5.05 0 99 - 0 - - 0 0035 +1 15820 15856 17067 1245 1209 9.95 99 99 - - - - - -1 17067 16932 16735 330 195 -0.02 0 99 - - 0 - - 0036 +2 16841 16931 17071 228 138 -1.40 61 - 61 - 38 - - 0037 -2 17281 17269 17036 243 231 6.63 99 - - - - 99 - +1 17779 17920 18048 267 126 -3.33 0 0 - - - - 99 0038 -3 18215 18188 17346 867 840 9.83 99 - - - - - 99 +2 18350 18470 18643 291 171 3.60 0 - 0 - - 99 - +2 18668 18683 18808 138 123 -2.11 0 - 0 - - 99 - 0039 -2 18841 18811 18296 543 513 14.76 99 - - - - 99 - +3 19035 19224 19355 318 129 0.83 0 - - 0 - - 99 0040 -3 19409 19382 18867 540 513 14.29 99 - - - - - 99 +2 19580 19595 19813 231 216 -3.70 0 - 0 - 99 - - +2 19922 19991 20209 285 216 0.94 0 - 0 - 99 - - 0041 -1 20427 20406 19492 933 912 9.21 99 - - - 99 - - +1 20470 20476 20652 180 174 0.77 0 0 - - 99 - - +3 20622 20634 20798 174 162 -4.34 0 - - 0 99 - - +1 20884 20926 21084 198 156 1.41 0 0 - - 99 - - 0042 -1 21126 21081 20452 672 627 10.98 99 - - - 99 - -