Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_eggerthii.result/NZ_DS9955111.0.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_eggerthii.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_eggerthii.result/NZ_DS9955111.0.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_eggerthii.result/NZ_DS9955111.0.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_eggerthii.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_DS9955111.0.AOI_01 Sequence length = 21128 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 -2 433 409 179 252 228 -4.07 0 - 99 - - 0 - +3 216 276 437 219 159 -5.88 0 - 99 0 - 0 - -1 531 504 376 153 126 3.00 0 0 99 - 0 - - 0001 +2 2 80 553 549 471 11.35 99 - 99 - - - - -1 993 981 793 198 186 -1.23 0 - 99 - 0 0 - 0002 -2 1174 826 665 507 159 1.12 99 - - - - 99 - +3 1038 1098 1220 180 120 -6.33 0 - 99 0 - - - -1 1584 1557 1387 195 168 -1.03 0 - 99 - 0 0 - -2 1774 1720 1175 597 543 1.23 0 - 99 - - 0 - -1 1917 1896 1705 210 189 -1.04 0 - 99 - 0 - - -3 1958 1925 1800 156 123 -6.18 0 - 99 - - 0 0 0003 +2 692 704 2116 1422 1410 11.04 99 - 99 - - - - 0004 -2 2170 2164 1775 393 387 -3.26 99 - - - - 99 - +2 2117 2336 2485 366 147 4.20 0 - 0 - - 99 - 0005 -2 2521 2398 2189 330 207 12.74 99 - 0 - - 99 - 0006 +3 2385 2403 2597 210 192 -1.13 99 - - 99 - - - +2 2528 2660 2851 321 189 0.41 0 - 0 - - 99 - +2 2852 3029 3208 354 177 4.19 0 - 0 - - 99 0 0007 -2 3286 3286 2522 762 762 8.23 99 - - - - 99 - +1 3313 3382 3525 210 141 -2.16 0 0 - 0 - - 99 0008 +3 3105 3237 3530 423 291 -1.66 99 - - 99 - - - 0009 -3 3638 3620 3309 327 309 8.98 99 - - - - - 99 +3 3726 3849 4043 315 192 -3.86 0 - 0 0 - 99 - -1 4128 4113 3958 168 153 -6.38 0 - 0 - 0 99 - +2 3806 3923 4192 384 267 2.01 0 - 0 - - 99 - +3 4044 4050 4442 396 390 1.28 0 - - 0 - 99 - 0010 -2 4453 4423 3695 756 726 8.23 99 - - - - 99 - 0011 +1 4366 4366 4608 240 240 0.10 87 87 - - - - 12 0012 -3 4661 4508 4299 360 207 -0.45 99 - - - - - 99 +3 4527 4530 4676 147 144 -11.86 0 - - 0 99 0 - +2 4574 4574 4729 153 153 -0.64 8 - 8 - 91 0 - +1 4657 4717 5007 348 288 5.81 0 0 - - 99 0 - +3 5046 5055 5309 261 252 -10.15 0 - - 0 99 0 - 0013 -2 5431 4831 4454 975 375 -5.71 0 - - - 99 0 0 +2 5261 5306 5473 210 165 -2.90 0 0 0 - 99 - - 0014 -1 5496 5496 4420 1074 1074 8.19 99 - - - 99 - - 0015 +1 5101 5203 5583 480 378 1.40 99 99 - - - - - 0016 +2 5477 5486 5611 132 123 -3.36 99 - 99 - - - - 0017 +3 5625 5634 5762 135 126 -4.46 99 - - 99 - - - 0018 +2 5690 5741 5866 174 123 -2.62 35 63 35 - - - 1 -3 5942 5888 5727 213 159 -5.56 1 98 - - - - 1 0019 +1 5731 5782 5946 213 162 -1.88 97 97 - - - - 2 +1 6004 6043 6168 162 123 0.07 0 0 - 0 - - 99 0020 -3 6575 6572 6006 567 564 11.36 99 - - - - - 99 0021 +3 6033 6303 6581 546 276 4.94 99 - - 99 - - - 0022 +1 6517 6529 6651 132 120 -0.66 99 99 - - - - - 0023 +1 6736 6763 6924 186 159 2.62 99 99 - - 0 - - 0024 -3 6932 6929 6777 153 150 -5.91 98 - - - 1 - 98 0025 -1 6939 6810 6682 255 126 0.49 99 - - - 99 - - 0026 -3 7271 7271 7005 264 264 5.21 99 - - 0 - - 99 0027 +3 6951 6969 7283 330 312 1.28 99 - - 99 - - - 0028 +1 7084 7087 7803 717 714 11.58 99 99 - - - - - 0029 +2 7685 7694 7861 174 165 -0.65 99 - 99 - 0 - - -1 7872 7278 7123 747 153 1.89 0 99 - 0 0 - - -3 8093 8087 7938 153 147 -6.52 0 99 - - 0 - 0 -2 8428 8404 8276 150 126 -9.22 0 99 - - 0 0 - -3 8450 8441 8313 135 126 -5.90 0 99 - - 0 - 0 -3 8903 8876 8706 195 168 -0.58 0 99 - - 0 - 0 0030 -1 8922 8826 7873 1047 951 -1.16 0 99 - - 0 - - 0031 +1 7849 7858 8931 1080 1071 10.98 99 99 - - - - - -2 9172 9172 9005 165 165 -2.04 0 - - 99 - 0 - -3 9212 9176 9036 174 138 -6.36 0 - - 99 - 0 0 +1 9049 9070 9216 165 144 -11.33 0 0 - 99 - - 0 -2 9547 9520 9341 204 177 1.71 0 - - 99 - 0 0 +1 9436 9472 9654 216 180 -10.08 0 0 - 99 - - 0 0032 +3 8919 8928 9902 981 972 11.65 99 - - 99 - - - 0033 -3 9992 9923 9213 777 708 -1.48 0 - - 99 - - 0 +3 10059 10059 10223 162 162 -8.75 0 - 99 0 - 0 - +1 10414 10414 10536 120 120 -8.86 0 0 99 0 - 0 - +3 10377 10431 10583 204 150 -19.80 0 - 99 0 - 0 - -2 10591 10531 10055 534 474 1.78 0 - 99 - - 0 - -1 10626 10623 10489 135 132 -2.21 0 - 99 - 0 - - -1 10902 10806 10627 273 177 -2.93 0 - 99 - 0 0 - +3 10890 10959 11090 198 129 -13.61 0 - 99 0 - 0 - 0034 +2 9977 9986 11134 1155 1146 12.95 99 - 99 - - - - 0035 -1 11151 11142 11014 135 126 -3.49 19 - - - 19 80 - -3 11342 11309 11178 162 129 -10.97 0 - 99 - - 0 0 -1 11430 11430 11275 153 153 -7.00 0 - 99 - 0 0 - 0036 -2 11482 11116 10592 888 522 -0.71 0 - 99 - - 0 - -1 11583 11568 11431 150 135 -7.51 0 - 99 - 0 - - -2 11758 11635 11510 246 123 -2.40 0 - 99 - - 0 0 0037 +2 11135 11186 11878 741 690 10.10 99 - 99 - - - - 0038 +3 11775 11781 11903 126 120 -4.10 99 - - 99 - - - +3 12012 12048 12227 213 177 1.54 0 0 - 0 - - 99 -2 12379 12310 12170 207 138 -6.71 0 0 - - - 0 99 -1 12501 12324 12202 297 120 -7.51 0 1 - - 0 0 98 +2 12377 12407 12529 150 120 -14.46 0 0 0 - - - 99 +1 11950 12055 12549 597 492 1.16 0 0 - - - - 99 0039 -3 12752 12614 11946 804 666 5.05 99 - - - - - 99 0040 +1 12577 12643 12786 207 141 -1.11 99 99 - - - - - 0041 -1 13041 13035 12760 279 273 -3.18 99 - - - 99 - - 0042 -2 13210 13060 12908 300 150 -1.20 99 - - - - 99 - +1 13054 13102 13248 192 144 -1.94 0 0 - 99 - - 0 -3 13466 13226 13038 426 186 1.43 0 - - 99 - - 0 -2 13549 13537 13370 177 165 -1.47 0 - - 99 - 0 - -3 13754 13637 13467 285 168 -3.12 0 - - 99 - - 0 -2 14071 13783 13661 408 120 -4.75 0 - 0 99 - 0 - +1 13906 13945 14106 198 159 -4.51 0 0 - 99 - - 0 0043 +3 12981 12987 14663 1680 1674 9.22 99 - - 99 - - - 0044 +1 14563 14563 14685 120 120 2.62 99 99 - - 0 0 0 0045 -3 14759 14723 13869 888 852 -6.42 0 - - 99 - 0 0 0046 -1 14883 14772 14389 492 381 -7.81 99 - - - 99 - - +3 14754 14865 15002 246 135 -3.38 0 - 99 0 - 0 - -2 15058 14992 14690 366 300 -1.08 0 - 99 - - 0 - -3 15524 15449 15240 282 207 -9.93 0 - 99 - 0 0 0 -1 15561 15084 14926 633 156 -2.55 0 - 99 - 0 - - -2 15574 15454 15059 513 393 -1.45 0 - 99 - 0 0 - -2 15826 15799 15575 249 222 -0.45 0 - 99 - - 0 - 0047 +2 14669 14675 15919 1248 1242 5.66 99 - 99 - - - - -2 16171 16171 15905 264 264 -4.42 5 - - - - 5 94 +1 16156 16159 16281 123 120 -11.65 0 0 - 99 - - 0 -1 16389 16377 16252 135 123 -14.69 0 - 0 99 0 - 0 0048 -3 16670 16043 15879 789 162 -2.22 99 - - - - - 99 -3 16889 16853 16710 177 141 1.85 0 - - 99 - - 0 +2 16817 16847 16969 150 120 -5.45 0 - 0 99 - - - 0049 +3 15912 15912 17177 1263 1263 11.49 99 - - 99 - - - -2 17179 17116 16979 198 135 0.93 0 - - 99 - 0 - -1 17748 17697 17425 321 270 3.01 0 - 99 - 0 - - -3 17807 17795 17649 156 144 -8.81 0 - 99 - - - 0 -2 18535 17995 17855 678 138 0.49 0 - 99 - - 0 - 0050 +2 17174 17201 18598 1422 1395 9.12 99 - 99 - - - - -1 18810 18780 18649 159 129 1.07 0 - 99 - 0 - - -3 18989 18884 18738 249 144 -6.12 0 - 99 - - - 0 -2 19144 19054 18878 264 174 -1.86 0 - 99 - - 0 - +3 19062 19119 19277 213 156 -2.85 0 - 99 0 - - - -2 19846 19741 19205 639 534 -0.14 0 - 99 - - 0 - 0051 +2 18653 18698 20068 1413 1368 10.16 99 - 99 - - - - 0052 -3 20192 20144 19956 234 186 -1.30 99 - - - - - 99 -2 20326 20269 20147 177 120 -1.31 0 - 99 - - 0 - -3 20444 20429 20304 138 123 -5.90 0 - 99 - - - 0 +3 20334 20424 20567 231 141 -8.61 0 - 99 0 - - - -3 20687 20663 20511 174 150 -7.56 0 - 99 - - - 0 +3 20568 20583 20720 150 135 -2.24 0 - 99 0 - - - -1 21063 21048 20827 234 219 -6.71 0 - 99 - 0 - -