Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_dorei.result/NZ_DS9955321.3.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_dorei.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_dorei.result/NZ_DS9955321.3.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_dorei.result/NZ_DS9955321.3.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_dorei.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_DS9955321.3.AOI_01 Sequence length = 21143 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 +2 2 41 178 174 135 7.42 0 - 0 - - 99 - 0001 +3 213 243 515 300 270 4.31 99 - - 99 - - - -3 692 665 474 216 189 0.43 0 - - - - 99 0 +1 589 622 777 186 153 2.74 0 0 - - - 99 - 0002 +2 647 683 1549 900 864 -9.05 99 - 99 - - 0 - 0003 -2 1573 880 311 1260 567 6.40 99 - - - - 99 - 0004 +3 810 819 1577 765 756 -11.38 99 - - 99 - 0 - 0005 -3 1775 1667 1539 234 126 -0.67 99 - - - - - 99 +1 2005 2020 2151 144 129 -9.28 0 0 - - - 99 - +3 2187 2214 2348 159 132 -2.14 0 - - 0 - 99 - +2 2282 2435 2575 291 138 2.58 0 - 0 - 0 99 - -1 2586 2376 2254 330 120 -0.99 0 - - - 0 99 - +3 2721 2748 2873 150 123 0.83 0 - - 0 - 99 - +1 3025 3097 3231 204 132 -12.31 0 0 0 0 - 99 - +3 3081 3177 3410 327 231 -0.29 0 - 0 0 - 99 - -3 3446 3380 3222 222 156 -3.99 0 - 0 0 - 99 0 +2 2906 3365 3496 588 129 -5.86 0 0 0 - - 99 - +1 3310 3460 3639 327 177 -14.71 0 0 - - - 99 - -3 3683 3674 3540 141 132 -8.50 0 - 0 - - 99 0 +3 3609 3723 3866 255 141 -1.36 0 - 0 0 - 99 - -1 3954 3927 3784 168 141 -3.93 0 - 0 - 0 99 - +2 3497 3818 3988 489 168 0.65 0 - 0 - - 99 - 0006 -2 4015 3958 1766 2247 2190 10.15 99 - - - - 99 - +2 4232 4310 4450 216 138 -2.03 0 0 0 - 99 - - +2 4451 4544 4669 216 123 -2.00 0 0 0 - 99 - - +1 4174 4288 4680 504 390 4.62 0 0 - - 99 - - +2 4748 4754 4894 144 138 -4.60 0 - 0 - 99 - - 0007 -1 4965 4947 4165 798 780 12.62 99 - - - 99 - - -3 5252 5210 5055 195 153 0.94 0 - - 99 - - 0 -2 5365 5299 5114 249 183 1.97 3 - - 96 - 3 - -3 5600 5447 5304 294 141 -3.60 0 - - 99 - - 0 -2 5701 5617 5447 252 168 1.30 0 - - 99 - 0 - -2 6163 6025 5702 459 321 -1.48 0 - - 99 - 0 - 0008 +3 5037 5040 6188 1149 1146 5.19 99 - - 99 - - - +2 6239 6278 6400 159 120 -16.05 0 98 0 - 0 - 1 -3 6575 6071 5835 738 234 -0.33 0 - - 99 - 0 0 +3 6594 6639 6767 171 126 -7.39 0 99 - 0 - - - +2 6842 6845 7000 156 153 -13.36 0 99 0 - 0 - - -3 7070 7034 6903 165 129 -7.42 0 99 - - 0 - 0 0009 +1 6214 6220 7479 1263 1257 4.26 99 99 - - - - - 0010 -1 7578 7569 6646 930 921 -2.61 0 99 - - 0 - - 0011 -2 8035 7939 7448 585 489 2.10 99 - - - - 99 - +1 8191 8215 8364 171 147 -3.20 0 0 99 - - 0 - -2 8434 8326 8123 309 201 -2.58 0 - 99 - - 0 - 0012 +2 7472 7499 8464 990 963 10.06 99 - 99 - - - - -1 8499 8409 8242 255 165 0.25 0 - 99 - 0 0 - 0013 +3 8586 8613 8756 168 141 -5.46 97 - - 97 - 2 - 0014 -2 8761 8689 8552 207 135 -6.82 99 - - - - 99 - +3 8889 8997 9197 306 198 5.33 0 0 - 0 - - 99 +1 9001 9031 9234 231 201 1.51 0 0 - - - - 99 0015 -3 9311 9248 8850 459 396 8.25 99 - - - - - 99 -1 9441 9432 9301 138 129 -5.37 0 - - - 0 99 - +2 9533 9569 9757 222 186 -4.04 0 - 0 - - 99 - +3 9654 9657 9815 159 156 -2.59 0 - - 0 - 99 - +1 9709 9754 9915 204 159 -4.67 0 0 - - - 99 - 0016 -2 10003 9928 9278 723 648 10.39 99 - - - - 99 - +3 9981 10047 10427 444 378 2.31 0 - - 0 - - 99 +2 10859 10901 11032 171 129 -6.11 0 - 0 - 0 - 99 0017 -3 11147 11144 9987 1158 1155 11.46 99 - - - - - 99 +2 11252 11267 11398 144 129 1.41 0 0 0 - 99 - - +1 11224 11314 11508 282 192 -0.81 0 0 - - 99 - - +1 11509 11686 11823 312 135 1.76 0 0 0 - 99 - - +2 11603 11741 11917 312 174 -0.17 0 - 0 - 99 - - +1 11929 11974 12114 183 138 2.09 0 0 - - 99 - - 0018 -1 12234 12222 11248 984 972 12.66 99 - - - 99 - - +1 12247 12256 12414 165 156 -5.47 0 0 - - - - 99 +1 12568 12571 12726 156 153 -7.25 0 0 - 0 - - 99 +3 12426 12615 12812 384 195 -2.79 0 - - 0 - - 99 +1 12745 12763 12894 147 129 -8.09 0 0 - - - - 99 +3 12813 12909 13178 363 267 -2.06 0 - - 0 - - 99 0019 -3 13304 13298 12219 1083 1077 10.87 99 - - - - - 99 +1 13117 13186 13308 189 120 -8.94 0 0 0 - - - 99 0020 +2 13139 13256 13417 276 159 -12.23 99 - 99 - - - - 0021 +3 13269 13302 13541 270 237 -0.60 99 - - 99 - - - +1 13438 13480 13638 198 156 -2.26 0 0 - - - - 99 +3 13551 13563 13739 186 174 -0.40 0 - - 0 - - 99 +2 13733 13745 13876 141 129 -9.06 0 - 0 0 - - 99 0022 -3 13973 13952 13311 660 639 11.31 99 - - - - - 99 0023 +1 13849 13873 14079 228 204 4.29 99 99 - - - - - 0024 -1 14238 14202 14071 165 129 -5.14 44 - - - 44 - 55 -2 14374 14353 14162 210 189 -1.22 0 - 99 - - 0 - +3 14307 14406 14561 252 153 -6.57 0 - 99 0 - - 0 -1 14673 14610 14482 189 126 -0.19 0 - 97 - 0 2 - +1 14614 14665 14787 171 120 -3.19 0 0 99 - - - 0 -2 15082 14938 14735 345 201 0.43 0 - 99 - - 0 - -1 15153 15147 14944 207 201 0.32 0 - 99 - 0 - - 0025 +2 14090 14102 15448 1356 1344 8.27 99 - 99 - - - - 0026 +2 15449 15452 15814 363 360 -10.86 97 2 97 - - - - 0027 +1 15442 15442 15825 381 381 -11.49 99 99 - - - - - -3 15833 15800 15474 357 324 -28.70 0 7 8 83 0 - 0 +2 15815 15878 16030 213 150 -4.99 0 - 0 - 99 - - 0028 -1 16074 16065 15811 261 252 5.80 99 - - - 99 - - 0029 +3 16185 16185 16328 141 141 4.90 40 59 - 40 - - - 0030 +1 16177 16189 16335 156 144 4.08 99 99 - - - - - +3 16359 16383 16505 144 120 0.94 0 - - 0 - 99 - +3 16506 16542 16712 204 168 0.92 0 - - 0 - 99 - +2 16910 16934 17083 171 147 -1.33 0 - 0 - - 99 - +1 17023 17041 17193 168 150 -7.06 0 0 - - - 99 - +2 17087 17090 17215 126 123 0.71 0 - 0 0 - 99 - +3 17052 17148 17270 216 120 -1.59 0 - - 0 - 99 0 -1 17394 17370 17212 180 156 -7.27 0 - 0 - 0 99 - +2 17216 17291 17461 243 168 -1.44 0 - 0 - - 99 - +3 17361 17376 17561 198 183 0.67 0 - - 0 - 99 - +3 17583 17589 17774 189 183 -1.16 0 - 0 0 - 99 - +2 17513 17576 17806 291 228 3.32 0 - 0 - - 99 - +3 17775 17862 18059 282 195 -0.61 0 - - 0 - 99 - +2 18149 18164 18289 138 123 2.49 0 - 0 0 - 99 - +3 18159 18159 18302 141 141 -0.03 0 - - 0 - 99 - -1 18318 18306 18172 144 132 -5.67 0 - - - 0 99 - +3 18414 18492 18638 222 144 -2.16 0 - - 0 - 99 - -1 19101 19041 18916 183 123 3.31 0 - - - 0 99 - -3 19202 19193 19029 171 162 -8.72 0 - - - - 99 0 +2 19073 19130 19309 234 177 -0.22 0 - 0 - - 99 - -3 19487 19478 19353 132 123 -4.34 0 - - - - 99 0 +3 19824 19824 19952 126 126 -2.14 0 - - 0 - 99 - 0031 -2 20257 20254 16322 3933 3930 10.26 99 - - - - 99 - 0032 -2 21142 21016 20387 753 627 11.64 99 - - - - 99 -