Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_dinenymphae.result/NZ_BBRU010005551.34.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_dinenymphae.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_dinenymphae.result/NZ_BBRU010005551.34.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_dinenymphae.result/NZ_BBRU010005551.34.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_dinenymphae.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_BBRU010005551.34.AOI_01 Sequence length = 12675 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 -3 491 407 183 306 222 -1.87 0 0 - - 99 - 0 +2 329 329 529 198 198 0.63 0 0 0 - 99 - - +1 97 292 564 465 270 0.01 0 0 - - 99 - - 0001 -1 834 822 643 189 177 9.50 99 - - - 99 - - 0002 +2 695 821 964 267 141 3.42 99 - 99 - - - - 0003 -2 1018 1009 872 144 135 4.56 99 - - - - 99 - 0004 +2 965 1001 1177 210 174 -3.61 99 - 99 - - - - -1 1452 1443 1213 237 228 -5.13 0 99 - - 0 - 0 -3 1538 1487 1104 432 381 0.12 0 99 - - - - 0 -3 1682 1673 1542 138 129 7.00 0 99 - - - - 0 -3 2024 1931 1797 225 132 -0.73 0 99 - - - - 0 -1 2076 2058 1918 156 138 2.73 0 99 - - 0 - - -3 2294 2267 2145 147 120 -6.70 0 99 - - - 0 0 -2 2320 2305 2111 207 192 -2.57 0 99 - - - 0 - +2 2195 2228 2356 159 126 -1.22 0 99 0 - - - - -3 2498 2432 2298 198 132 -3.51 0 99 - - - - 0 0005 +1 1015 1021 2595 1578 1572 9.81 99 99 - - - - - 0006 -2 2686 2659 2420 264 237 -3.89 99 - - - - 99 - 0007 +1 2599 2611 2907 306 294 -5.90 99 99 - - - - - 0008 -3 3038 3023 2787 249 234 -2.40 99 - - - - - 99 0009 +3 3006 3018 3158 150 138 6.07 14 85 - 14 - - - +2 3089 3125 3274 183 147 -5.47 0 99 0 - - - - -1 3324 3294 3130 192 162 -2.30 0 99 - - 0 - - -3 3386 3263 3138 246 123 -1.66 0 99 0 - 0 - 0 +2 3275 3281 3460 183 177 -3.92 0 99 0 - - - - +3 3396 3426 3563 165 135 -11.23 0 99 - 0 0 - - -2 3634 3634 3503 129 129 -5.35 0 99 - - 0 0 - +2 3578 3590 3733 153 141 -8.08 0 99 0 - 0 - - -1 3813 3510 3325 486 183 0.85 0 99 - - 0 - - +3 3639 3693 3875 234 180 -1.94 0 99 - 0 - - - 0010 +1 2995 3058 4161 1164 1101 9.76 99 99 - - - - - -1 4164 4002 3814 348 186 -0.48 0 99 - - 0 - - -3 4175 4052 3879 294 171 -3.13 0 99 - 0 0 - 0 +3 4338 4344 4475 135 129 -9.58 0 - 99 0 - 0 0 -2 4624 4471 4196 426 273 -0.82 0 - 99 - - 0 - -1 5016 4806 4663 351 141 -2.15 0 - 99 - 0 0 - +3 4938 4974 5117 177 141 -5.50 0 - 99 0 - 0 - -2 5158 4786 4628 528 156 -8.11 0 - 99 - - 0 - -1 5250 5175 5017 231 156 -1.73 0 - 99 - 0 - 0 0011 +2 4148 4181 5254 1104 1071 11.35 99 - 99 - - - - 0012 -2 5320 5287 5159 159 126 4.84 99 - - - - 99 - -1 5673 5586 5452 219 132 0.11 0 - - 99 0 - 0 +2 5513 5540 5692 177 150 -2.03 0 0 0 99 - - 0 +1 5497 5548 5730 231 180 3.58 0 0 - 99 - - 0 -2 5947 5857 5705 240 150 1.31 0 - - 99 - 0 0 -3 5981 5738 5313 666 423 0.94 0 - - 99 - - 0 -1 6198 6189 6049 147 138 -8.98 0 - - 99 0 - 0 -3 6218 6191 5982 234 207 1.60 0 - - 99 - - 0 +2 6092 6128 6256 162 126 -7.76 0 - 0 99 - - - 0013 +3 5196 5277 6293 1095 1014 13.20 99 - - 99 - - - -1 6666 6663 6436 228 225 -4.31 2 97 - - 2 - - 0014 +1 6400 6565 6699 297 132 2.17 84 84 - - - - 15 +3 6846 6858 7076 228 216 1.47 0 - 0 0 - 99 - +2 6824 6842 7180 354 336 -0.28 0 - 0 - - 99 - +3 7164 7185 7307 141 120 10.05 0 - - 0 - 99 0 -3 7397 7289 7143 252 144 8.89 0 - - - - 99 0 -1 7440 7401 7219 219 180 -2.95 0 - 0 - 0 99 0 +2 7205 7241 7492 285 249 -4.24 0 - 0 - - 99 - +3 7350 7413 7538 186 123 -1.35 0 0 - 0 - 99 - -1 7671 7563 7441 228 120 -4.62 0 0 - - 0 99 - 0015 -2 7876 7876 6656 1218 1218 12.56 99 - - - - 99 - -3 7880 7853 7719 159 132 -3.42 0 - - - - 99 0 0016 +3 7725 7764 7955 228 189 8.82 99 - - 99 - - - +2 8189 8189 8395 204 204 1.52 0 - 0 - - - 99 +1 8473 8485 8676 201 189 2.23 0 0 - 0 - - 99 0017 -3 8711 8705 7881 828 822 12.42 99 - - - - - 99 0018 +3 8388 8502 8777 387 273 4.09 99 - - 99 - - - -1 9123 9051 8914 207 135 -4.82 0 99 - - 0 - - +3 9159 9288 9479 318 189 -1.93 0 99 - 0 0 - - -3 9551 9452 9297 252 153 3.85 0 99 - 0 0 - 0 -3 9719 9704 9552 165 150 -5.96 0 99 - - 0 - 0 -1 9771 9330 9124 645 204 5.55 0 99 - - 0 - - +3 9558 9822 9968 408 144 -1.76 0 99 - 0 0 - - 0019 +1 8731 8734 10020 1287 1284 10.68 99 99 - - - - - -3 10088 10007 9855 231 150 1.38 0 99 - - 0 - 0 0020 -1 10167 10026 9808 357 216 -1.70 99 - - - 99 - - +1 10093 10138 10290 195 150 -4.39 0 0 99 - - 0 0 -2 10333 10156 9986 345 168 0.28 0 - 99 - 0 0 - -1 10506 10395 10189 315 204 4.11 0 - 99 - 0 - - +3 10404 10416 10553 147 135 -2.54 0 0 99 0 - 0 - -2 10681 10537 10334 345 201 0.52 0 - 99 - - 0 - -1 10686 10671 10513 171 156 -0.51 0 - 99 - 0 0 - -2 11110 10825 10682 426 141 -2.24 0 0 99 - - 0 - 0021 +2 9980 9989 11167 1185 1176 11.82 99 - 99 - - - - -3 11198 11117 10866 330 249 -14.01 0 - 99 - - - 0 0022 -2 11314 11257 11111 201 144 -2.72 94 - - 5 - 94 - +3 11115 11148 11327 210 177 -2.77 0 0 - 0 99 - - +1 11152 11239 11544 390 303 0.32 0 0 - - 99 - - +3 11517 11526 11648 129 120 -1.79 0 - - 0 99 - - +2 11627 11726 11854 225 126 2.68 0 0 0 - 99 - - +1 11560 11698 11988 426 288 2.87 0 0 - - 99 - - -3 12413 12377 12186 225 189 0.37 0 0 - - 99 - 0 0023 -1 12480 12477 11140 1338 1335 12.85 99 - - - 99 - - 0024 +1 12052 12115 12516 462 399 2.92 99 99 - - - - -