Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_coprosuis.result/NZ_CM0011671.0.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_coprosuis.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_coprosuis.result/NZ_CM0011671.0.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_coprosuis.result/NZ_CM0011671.0.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_coprosuis.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_CM0011671.0.AOI_01 Sequence length = 21134 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 -1 567 489 277 288 210 2.21 0 - 99 - 0 - - -1 891 867 724 165 141 -0.14 0 - 99 - 0 - - 0001 +2 2 23 931 927 906 10.90 99 - 99 - - - - 0002 -1 1248 1245 1078 168 165 -0.26 99 - - - 99 - - +3 1638 1662 1829 189 165 -0.53 0 - - 0 - - 99 +3 1830 1830 1958 126 126 -0.42 0 - - 0 - - 99 0003 -3 2030 2021 1458 570 561 11.14 99 - - - - - 99 +3 2256 2274 2414 156 138 5.77 0 - - 0 99 - - +2 2501 2522 2662 159 138 3.75 2 - 2 - 97 - - 0004 -1 2925 2865 1948 975 915 8.47 99 - - - 99 - - 0005 +3 2847 2874 3002 153 126 12.55 99 - - 99 - - - +2 3275 3290 3424 147 132 -2.52 0 - 0 - 99 - - 0006 -1 3858 3837 3073 783 762 14.86 99 - - - 99 - - 0007 -1 4203 4173 3859 342 312 17.19 99 - - - 99 - - 0008 -3 5000 4994 4299 699 693 11.92 99 - - - - - 99 +1 5503 5563 5718 213 153 -0.21 0 0 - - 99 - - 0009 -1 6018 6006 5017 999 987 13.00 99 - - - 99 - - 0010 +3 6084 6105 6260 174 153 -5.35 99 - - 99 - - - 0011 -3 6698 6680 6114 582 564 17.28 99 - - - - - 99 0012 +2 6791 6806 6961 168 153 8.60 99 - 99 - - - - 0013 +3 6891 6903 7058 165 153 3.94 99 - - 99 - - - -1 7455 7446 7252 201 192 0.87 0 - 99 - 0 - - -1 7911 7881 7726 183 153 7.03 0 - 99 - 0 - - 0014 +2 7256 7286 7915 657 627 14.58 99 - 99 - - - - -2 8449 8317 8183 264 132 0.64 0 - 99 - - 0 - -1 8658 8583 8386 270 195 -1.03 0 - 99 - 0 - - -2 8881 8869 8693 186 174 -3.31 0 - 99 - - 0 - 0015 +2 7916 7937 9004 1086 1065 13.61 99 - 99 - - - - -1 9294 9252 9112 180 138 1.30 0 99 - - 0 - - -3 9536 9515 9366 168 147 9.18 0 99 - - - - 0 -1 9774 9771 9634 138 135 2.02 0 99 - - 0 - - 0016 +1 8995 9001 9981 984 978 15.76 99 99 - - - - - -3 10190 10169 10038 150 129 -12.08 0 - - 99 - - 0 0017 +3 9972 9990 11138 1164 1146 15.07 99 - - 99 - - - -2 11155 11122 11000 153 120 6.67 0 - - 99 - 0 - 0018 +1 11131 11140 11814 681 672 13.65 99 99 - - - - - -2 12064 12043 11876 186 165 11.21 0 - - 99 - 0 - 0019 +3 11802 11811 12197 393 384 17.62 99 - - 99 - - - 0020 -1 12279 12273 12130 147 141 6.87 13 - - - 13 86 - 0021 +3 12204 12237 12362 156 123 10.17 99 - - 99 - - - -1 12855 12831 12388 465 441 3.91 0 - 99 - 0 - - -3 12953 12932 12789 162 141 -0.39 0 - 99 - - - 0 -2 13231 13165 13013 216 150 4.25 0 - 99 - - 0 - -3 13268 13265 13128 138 135 0.79 0 - 99 - - - 0 0022 +2 12371 12398 13516 1143 1116 12.76 99 - 99 - - - - 0023 +1 13513 13513 13641 126 126 5.32 99 99 - - - - - +3 13545 13605 13790 243 183 -1.10 0 - - 0 - 99 - +1 13714 13717 13923 207 204 -4.55 0 0 - - - 99 - +2 13892 13916 14062 168 144 -2.81 0 - 0 - - 99 - +3 13938 14028 14162 222 132 4.27 0 - - 0 - 99 - +3 14364 14364 14486 120 120 4.18 0 - - 0 - 99 - 0024 -2 14527 14524 13571 954 951 11.55 99 - - - - 99 - 0025 +1 14608 14614 14790 180 174 3.83 99 99 - - - - - +2 14867 14885 15013 144 126 1.02 0 - 0 - - - 99 +1 15214 15229 15369 153 138 4.21 0 0 - - - - 99 +2 15308 15341 15466 156 123 -3.00 0 - 0 - - - 99 0026 -3 15503 15479 14640 861 837 12.91 99 - - - - - 99 +1 15769 15784 15927 156 141 1.06 0 0 - - 99 - - 0027 -1 16092 16062 15553 537 507 18.98 99 - - - 99 - - 0028 +2 15977 15983 16126 147 141 9.05 99 - 99 - - - - +1 16243 16246 16368 123 120 -1.51 0 0 - - - 99 - +3 16260 16263 16394 132 129 3.79 0 - - 0 - 99 - +1 16372 16405 16560 186 153 11.56 0 0 - - - 99 - 0029 -2 16651 16636 16118 531 516 19.11 99 - - - - 99 - +2 16991 17006 17179 186 171 -1.63 0 - 0 - - - 99 -2 17782 17776 17654 126 120 -1.32 0 - - - - 0 99 -1 17928 17907 17776 150 129 -0.81 0 - - - 0 - 99 +1 17824 17860 17991 165 129 0.82 0 0 - - - - 99 +1 17992 18058 18180 186 120 -0.94 0 0 - - - 0 99 -2 18208 18193 17945 261 246 -5.19 0 - - - - 0 99 +1 18322 18463 18681 357 216 9.24 0 0 - - - - 99 0030 -3 19295 19295 16665 2628 2628 15.50 99 - - - - - 99 -3 19673 19667 19515 156 150 5.25 0 - - - - 99 0 +1 19564 19600 19752 186 150 -0.20 0 0 - - - 99 - +3 19704 19734 19922 216 186 3.96 0 - - 0 - 99 - 0031 -2 20059 20056 19319 738 735 12.69 99 - - - - 99 - 0032 +1 19879 19975 20097 216 120 1.44 99 99 - - - - - 0033 -3 21134 21080 20088 1044 990 15.17 99 - - - - - 99