Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_coprophilus.result/NZ_BBIH010000271.75.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_coprophilus.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_coprophilus.result/NZ_BBIH010000271.75.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_coprophilus.result/NZ_BBIH010000271.75.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_coprophilus.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_BBIH010000271.75.AOI_01 Sequence length = 21140 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 0001 +3 213 243 368 153 123 4.45 99 - - 99 - - - -2 541 532 410 129 120 -0.40 0 - 99 - - 0 - 0002 +3 798 813 938 138 123 0.73 81 - 18 81 - - - 0003 +2 356 389 1048 690 657 7.45 99 - 99 - - - - -2 1054 1045 845 207 198 0.12 0 - 99 - - 0 - +3 1125 1155 1361 234 204 3.24 0 - - 0 - - 99 -2 1540 1405 1250 288 153 -3.25 0 - - - - 0 99 +3 1596 1638 1808 210 168 -1.67 0 - - 0 - - 99 0004 -2 2200 2149 1964 234 183 -0.91 68 0 - - - 68 31 0005 -3 2225 2030 1119 1104 909 6.03 99 - - - - - 99 0006 +2 2006 2207 2332 324 123 0.97 99 0 99 - - - - 0007 +1 1888 2182 2427 537 243 -5.41 99 99 - - - - - 0008 -2 2464 2368 2213 249 153 5.90 99 0 - - - 99 - 0009 -3 2681 2654 2361 318 291 1.81 99 - - - - - 99 0010 +2 2816 2819 3082 264 261 -1.15 99 - 99 - - - - +1 2977 2995 3132 153 135 -9.82 0 0 - - - 99 - -1 3156 3156 3034 120 120 -3.53 0 - - - 0 99 - -1 3393 3354 3232 159 120 -1.90 0 - 4 - 0 95 - +2 3113 3161 3460 345 297 2.16 0 - 0 - - 99 - +2 3677 3773 3907 228 132 4.27 0 - 0 - - 99 - -3 4070 4034 3876 192 156 1.02 0 - - - - 99 0 -1 4251 4221 4099 150 120 -2.18 0 - 0 - 0 99 - +2 3908 4154 4372 462 216 2.60 0 - 0 - - 99 - +1 4360 4408 4545 183 135 -2.81 0 0 0 - - 99 - -1 4593 4578 4441 150 135 -1.68 0 - 1 - 0 98 - +2 4373 4451 4597 222 144 2.78 0 - 0 - 0 99 - -1 4740 4728 4594 144 132 -3.55 0 - - - 0 99 - +1 4675 4675 4827 150 150 -3.37 0 0 - - - 99 - +3 4905 5010 5144 237 132 3.44 0 - 0 0 - 99 - +2 4871 4931 5212 339 279 2.19 0 - 0 - - 99 - -1 5376 5352 5188 186 162 -3.24 0 - - - 0 99 - -1 5664 5571 5410 252 159 -3.00 0 - - - 0 99 - -3 5708 5702 5580 126 120 -3.63 0 - 0 - - 99 0 +2 5477 5504 5953 474 447 1.00 0 - 0 - - 99 - 0011 -2 5998 5980 2870 3126 3108 8.28 99 - - - - 99 - -2 6523 6523 6347 174 174 -2.11 0 - - - - 0 99 +3 6360 6411 6605 243 192 0.98 0 - - 0 - - 99 -2 6676 6658 6536 138 120 -10.52 0 - - - - 0 99 +1 6616 6625 6750 132 123 0.36 0 0 - 0 - - 99 -2 6931 6931 6800 129 129 -0.54 0 0 - 0 - 0 99 +3 6606 6741 6962 354 219 2.16 0 - - 0 - - 99 +1 6796 6829 6966 168 135 4.81 2 2 - - - - 97 0012 -3 7016 6980 6012 1002 966 10.29 99 - - - - - 99 -3 7178 7172 7017 159 153 3.00 0 0 - - 99 - 0 +3 7062 7092 7226 162 132 -0.04 0 18 - 0 81 - - 0013 -1 7509 7464 6994 513 468 10.27 99 - - - 99 - - 0014 +2 7292 7337 7516 222 177 3.17 99 - 99 - - - - 0015 +3 7359 7401 7526 165 123 0.31 99 - - 99 - - - 0016 -3 7703 7691 7461 240 228 6.28 99 - - - - - 99 -2 8176 8137 7952 222 183 -4.84 0 - - 99 - 0 - 0017 -3 8756 8699 7965 789 732 2.23 0 - - 99 - - 0 0018 +3 7758 7827 8834 1074 1005 7.26 99 - - 99 - - - 0019 -2 9331 9310 8912 417 396 14.43 99 - - - - 99 - +3 9633 9633 9770 135 135 0.58 0 - - 0 - 99 - -3 9833 9803 9681 150 120 -0.72 0 - - - - 99 0 -1 9897 9846 9724 171 120 -2.69 0 - - - 0 99 - +2 9746 9761 10009 261 246 0.67 0 - 0 - - 99 - -3 10037 10031 9906 129 123 -5.47 0 72 - - - 27 0 0020 -2 10177 9991 9335 840 654 6.71 99 - - - - 99 - +1 9904 10009 10206 300 195 3.60 0 0 - - 99 - - -2 10450 10447 10178 270 267 -3.63 0 - - - 99 0 - +1 10207 10219 10464 255 243 3.44 0 0 - - 99 - - +2 10643 10649 10846 201 195 -1.20 0 0 0 - 99 - - +1 10465 10591 10890 423 297 1.84 0 0 - - 99 - - -3 11027 11012 10881 144 129 -2.24 0 - - - 99 - 0 +2 10937 10943 11086 147 141 -1.26 0 1 0 - 98 - - 0021 -1 11148 11142 9988 1158 1152 9.51 99 - - - 99 - - 0022 +1 10891 10915 11166 273 249 4.43 99 99 - - - - - 0023 -2 11341 11332 11144 195 186 3.64 99 - - - - 99 - +1 11326 11335 11466 138 129 -7.86 0 0 - 0 - - 99 +3 11202 11313 11651 447 336 2.70 0 - - 0 - - 99 +1 11758 11767 11985 225 216 0.46 0 0 - - - - 99 +3 11967 12012 12314 345 300 1.98 0 - - 0 - - 99 0024 -3 12347 12323 11310 1035 1011 7.67 99 - - - - - 99 +2 12494 12500 12802 306 300 0.36 0 - 0 - - 99 - -1 12834 12822 12673 159 147 -6.28 0 - - - 0 99 - +3 12795 12831 12962 165 129 -7.07 0 - 0 0 - 99 - +2 12803 12956 13198 393 240 2.21 0 - 0 - - 99 - +3 13128 13134 13283 153 147 -5.52 0 - - 0 - 99 - 0025 -2 13360 13357 12293 1065 1062 11.48 99 - - - - 99 - 0026 +2 13199 13247 13378 177 129 -0.39 99 - 99 - - - - -2 13603 13588 13454 147 132 -2.49 0 - - - - 0 99 +1 13537 13588 13716 177 126 2.74 0 0 - 0 0 - 99 +3 13497 13512 13841 342 327 -0.96 0 - - 0 - - 99 +2 13814 13814 13951 135 135 -6.27 0 - 0 - - - 99 0027 -3 14039 14030 13383 654 645 11.33 99 - - - - - 99 0028 -3 14354 14339 14178 174 159 2.46 99 0 - - - - 99 0029 +1 14071 14296 14433 360 135 -0.74 90 90 - 9 - - - 0030 +3 14217 14322 14459 240 135 -0.32 99 - - 99 - - - 0031 -2 14524 14509 14363 159 144 1.87 99 - - - - 99 - -1 15072 15060 14935 135 123 -3.22 0 - 99 - 0 0 - 0032 +2 14465 14531 15097 630 564 13.91 99 - 99 - - 0 - -2 15178 14815 14525 651 288 4.68 0 - 99 - - 0 - 0033 -3 15215 15179 15045 168 132 -0.72 27 - - - - 72 27 +2 15212 15284 15493 279 207 4.57 0 - 0 - - 99 - +3 15642 15735 15878 234 141 -3.60 0 - 0 0 - 99 - +2 15728 15776 15934 204 156 5.04 0 - 0 - - 99 - 0034 -2 16066 16063 15179 885 882 9.43 99 - - - - 99 - +3 16101 16101 16487 384 384 3.54 0 - - 0 - - 99 0035 -3 16661 16544 16089 570 453 10.77 99 - - - - - 99 +1 16429 16606 16896 465 288 -1.26 0 0 - - 99 - - -2 17026 16984 16823 201 159 -10.91 0 - - - 99 0 0 0036 -1 17115 17037 16552 561 483 10.61 99 - - - 99 - - -2 17332 17314 17171 159 141 -5.45 0 - - 0 - 0 99 0037 -3 17522 17516 17010 510 504 10.77 99 - - - - - 99 +1 17293 17326 17550 255 222 -2.35 0 0 - 99 - - - 0038 +3 17031 17067 17579 546 510 3.09 99 - - 99 - - - 0039 -2 17839 17752 17513 324 237 3.22 99 - - - - 99 - -3 17927 17840 17649 276 189 3.86 0 - - 99 - 0 0 +1 17920 17935 18066 144 129 -6.77 0 0 - 99 - - 0 -3 18365 18320 18171 192 147 3.46 0 - - 99 - - 0 -3 18557 18506 18366 189 138 0.93 0 - 0 99 - - 0 -2 18646 18553 18380 264 171 0.02 0 - - 99 - 0 0 0040 +3 17628 17667 18656 1026 987 6.47 99 - - 99 - - - 0041 -1 18681 18681 18550 129 129 -3.53 15 - 84 - 15 - - -1 18882 18858 18724 156 132 -3.61 0 - 99 - 0 0 0 +3 18846 18879 19022 174 141 -6.96 0 - 99 0 - - - +1 18952 19045 19233 279 186 -7.10 0 0 99 - - 0 - 0042 +2 18512 18656 19348 834 690 5.65 99 - 99 - - - - -2 19447 19198 18989 456 207 1.34 0 0 99 - - 0 - 0043 +1 19399 19411 19731 330 318 13.45 99 99 - - 0 - - 0044 -1 19752 19653 19324 426 327 5.02 99 - - - 99 - - -3 19826 19751 19614 210 135 -3.37 0 - - 19 79 - 0 +1 20089 20149 20292 201 141 -5.43 0 0 - 99 - - 0 0045 +3 19545 19677 20555 1008 876 9.03 99 - - 99 - - - 0046 -3 20636 20525 19827 807 696 0.13 0 - - 99 - - 0 0047 +1 20560 20560 20721 159 159 -1.75 99 99 - - - - - -3 21014 20990 20865 147 123 0.52 0 - - - 99 - 0 0048 -1 21138 20910 20683 453 225 9.10 99 - - - 99 - -