Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_coprocola.result/NZ_DS9815071.8.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_coprocola.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_coprocola.result/NZ_DS9815071.8.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_coprocola.result/NZ_DS9815071.8.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_coprocola.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_DS9815071.8.AOI_01 Sequence length = 21140 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 +1 13 31 162 147 129 -3.19 1 1 - - - - 98 +2 407 434 568 159 132 -2.12 0 0 0 - 99 0 - +3 561 645 851 288 204 -4.22 0 0 - 0 99 - - 0001 -1 1302 1293 145 1155 1146 11.12 99 - - - 99 - - 0002 +1 163 301 1647 1482 1344 -3.44 0 0 0 - 99 - - 0003 -1 1647 1632 1312 333 318 12.80 99 0 - - 99 - - 0004 +2 1394 1550 1681 285 129 2.25 99 - 99 - - - - -3 1955 1928 1800 153 126 -11.83 0 0 - - 99 - 0 +1 1669 1843 1971 300 126 -4.45 0 0 0 - 99 - - -2 2035 2017 1889 144 126 -3.34 0 - - - 99 0 - 0005 -1 2385 2385 1693 690 690 7.11 99 - - - 99 - - +3 2364 2364 2492 126 126 -6.76 0 99 - 0 - - - 0006 +1 2266 2356 2511 243 153 -1.82 99 99 - - - - - +1 2512 2536 2697 183 159 -1.14 0 0 0 - 99 - - +2 2477 2540 2920 441 378 0.38 0 - 0 - 99 - - -3 2975 2891 2745 228 144 -3.04 0 0 0 - 99 - 0 +1 2698 2722 3102 402 378 -4.75 0 0 - - 99 - - +3 3006 3021 3272 264 249 -4.39 0 - - 0 99 - - 0007 -1 3396 3375 2386 1008 987 10.54 99 - - - 99 - - 0008 +1 3184 3298 3420 234 120 -1.32 99 99 - - - - - -1 3837 3798 3670 165 126 0.23 0 - 99 - 0 - - -3 4205 4196 4071 132 123 -2.07 0 - 99 - 0 0 0 -1 4215 4134 3958 255 174 -1.69 0 - 99 - 0 0 - -2 4219 4183 3944 273 237 -1.38 0 - 99 - - 0 - 0009 +2 3569 3581 4240 669 657 10.11 99 - 99 - - - - +3 4224 4266 4442 216 174 -13.85 0 99 - 0 0 - - -3 4457 4427 4287 168 138 0.11 0 99 - 0 0 - 0 -1 4599 4359 4216 381 141 -1.23 0 99 - - 0 - - +3 4443 4533 4658 213 123 1.93 0 99 - 0 - - - -3 4703 4703 4542 159 159 3.42 0 99 - - - - 0 0010 +1 4138 4213 4716 576 501 9.40 99 99 - - - - - +2 4616 4697 4834 216 135 2.48 0 - 0 99 - 0 - -2 4879 4672 4547 330 123 2.20 0 99 - - - 0 0 0011 +3 4701 4713 5171 468 456 10.82 99 - - 99 - - - 0012 -2 5317 5227 5063 252 162 2.89 99 - - - - 99 - -3 5381 5333 5187 192 144 3.63 0 99 - - - - 0 -1 5580 5547 5269 309 276 -2.87 0 99 - - 0 - - -3 5618 5564 5382 234 180 1.47 0 99 - - 0 - 0 +3 5496 5586 5759 261 171 -5.47 0 99 - 0 0 - - -2 5776 5773 5594 180 177 -5.19 0 99 - - 0 0 - +2 5711 5714 5884 171 168 -4.13 0 99 0 - - - - -1 6057 5940 5770 285 168 2.68 0 99 - - 0 - - 0013 +1 5155 5197 6084 927 885 9.68 99 99 - - - - - +3 5961 6015 6137 174 120 -5.24 0 - - 0 - - 99 -3 6314 6311 6189 123 120 -6.69 0 0 - - 99 - 0 +1 6085 6469 6744 657 273 1.69 0 0 - - 99 - - 0014 -1 6750 6738 6172 576 564 11.92 99 0 - - 99 - - 0015 +3 6912 6927 7088 174 159 2.43 99 - - 99 - - - -2 7093 7072 6938 153 132 -4.19 0 - - 99 - 0 - 0016 -1 7335 7296 7108 225 186 6.29 99 - - - 99 - - -1 7767 7692 7531 234 159 -0.89 0 - 99 - 0 0 - 0017 +2 7211 7217 7867 654 648 10.89 99 - 99 - - - - 0018 +1 7855 7858 7998 141 138 -7.13 99 99 - - - - - 0019 -3 8045 8009 7884 159 123 -6.31 99 - - - - - 99 -1 8067 8061 7906 159 153 1.89 0 - 99 - 0 - - -3 8528 8528 8307 219 219 -11.11 0 - 99 - - 0 0 -1 8592 8580 8458 132 120 -3.19 0 - 99 - 0 0 - 0020 +2 7895 7895 8962 1065 1065 6.98 99 - 99 - - - - -3 9080 9020 8886 192 132 -3.03 0 - - - - 99 0 0021 -2 9172 9103 7967 1203 1134 -0.92 0 - 99 - - 0 - -3 9266 9221 9081 183 138 0.57 0 - - 99 - - 0 -2 9592 9565 9392 198 171 1.65 0 - - 99 - 0 0 0022 +3 8946 8973 9953 1005 978 7.63 99 - - 99 - - - +2 9731 9773 9985 252 210 -1.10 1 - 1 - - - 98 0023 -3 10034 10028 9267 765 759 -0.06 99 - - - - - 99 -3 10193 10163 10035 156 126 -3.73 0 99 - 0 - - 0 -1 10251 10227 10075 174 150 0.68 3 96 - - 3 - - -3 10679 10637 10506 171 129 -2.38 0 99 - - 0 - 0 -1 10857 10818 10675 180 141 4.43 0 99 - - 0 - - 0024 +1 9994 10000 11154 1158 1152 6.24 99 99 - - - - - -2 11578 11521 11381 195 138 3.08 0 - - 99 - 0 - 0025 +3 11079 11151 11813 732 660 5.99 99 - - 99 - - - -2 12004 11968 11846 156 120 5.13 0 0 - 99 - 0 - -3 12143 12014 11883 258 129 0.12 0 - - 99 - - 0 -2 12151 12133 12005 144 126 -0.87 0 - - 99 - 0 0 0026 +3 11814 11832 12230 414 396 11.64 99 - - 99 - - - 0027 -2 12403 12298 12170 231 126 0.84 99 - - - - 99 - 0028 +1 12304 12331 12462 156 129 -0.13 99 99 - - - - - +1 12499 12556 12825 324 267 -3.15 0 0 - - 99 - - +1 12826 12856 13053 225 195 1.14 0 0 - - 99 - - 0029 -1 13425 13383 12418 1005 963 13.92 99 - - - 99 - - -3 13706 13706 13515 189 189 -7.61 0 - - - - 99 0 +1 13618 13627 13821 201 192 -0.63 0 0 - - - 99 - -1 13887 13884 13753 132 129 4.48 0 - 0 - 0 99 - +2 13721 13736 13939 216 201 -2.13 0 - 0 - - 99 - +3 14223 14223 14378 153 153 -5.94 0 - 0 0 - 99 - +2 14042 14219 14419 375 198 -2.20 0 - 0 - - 99 - +3 14379 14379 14729 348 348 0.57 0 - - 0 - 99 - 0030 -2 14737 14725 13478 1257 1245 6.73 99 - - - - 99 - 0031 +1 14509 14617 14922 411 303 4.78 99 99 - - - - - 0032 +3 14877 14895 15125 246 228 7.92 99 - - 99 - - - 0033 +2 15098 15122 15592 492 468 9.64 99 - 99 - - - - 0034 -2 15676 15673 15443 231 228 3.00 99 - - - - 99 - 0035 -3 15767 15749 15489 276 258 1.50 99 - - - - - 99 -3 15911 15908 15768 141 138 -3.98 0 99 - - 0 - 0 -1 16032 15942 15700 330 240 -1.02 0 99 - - 0 - - -2 16312 16309 16175 135 132 -5.24 0 99 - - - 0 - 0036 +1 15586 15601 16611 1023 1008 7.93 99 99 - - - - - 0037 -3 16712 16679 16554 156 123 1.50 99 - - - - - 99 0038 +1 16774 16801 17028 252 225 -1.32 99 99 - - - - - 0039 -1 17490 17481 16819 669 660 10.28 99 - - - 99 - - 0040 +1 17299 17377 17532 231 153 2.54 99 99 - - - - - +1 17563 17614 17811 246 195 -1.96 0 0 - - 99 - - +1 17812 17830 17955 141 123 -6.61 0 0 - - 99 - 0 -3 17969 17963 17823 144 138 0.57 0 - - - 99 - 0 +3 17991 18000 18125 132 123 -3.40 0 - - 0 99 - - +1 18040 18097 18435 393 336 -4.06 0 0 - - 99 - - +1 18544 18544 18690 144 144 -6.12 0 0 - - 99 - - +1 18691 18697 18966 273 267 -3.74 0 0 - - 99 - - +3 18918 18951 19094 174 141 -5.48 0 - - 0 99 - - -3 19160 19157 19014 144 141 -5.62 0 0 - - 99 - 0 +1 18988 19036 19176 186 138 -4.56 0 0 - - 99 - - +2 19106 19133 19261 153 126 -2.86 0 - 0 - 99 - - +3 19161 19224 19379 216 153 -3.28 0 - - 0 99 - - +3 19572 19572 19796 222 222 -0.01 0 - - 0 99 - - 0041 -1 20013 19947 17509 2502 2436 12.06 99 - - - 99 - - -1 20268 20265 20131 135 132 0.59 0 - - - 0 - 99 +3 20157 20169 20378 219 207 -2.36 0 - - 0 - - 99 +1 20653 20791 20913 258 120 -9.88 0 0 - 0 - - 99 -1 21123 21060 20920 201 138 -0.06 0 - - 0 0 - 99 0042 -3 21140 21134 20025 1113 1107 11.22 99 - - - - - 99