Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_caccae.result/NZ_AAVM020000081.3.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_caccae.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_caccae.result/NZ_AAVM020000081.3.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_caccae.result/NZ_AAVM020000081.3.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_caccae.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_AAVM020000081.3.AOI_01 Sequence length = 21128 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 -2 415 223 95 318 126 -3.94 0 - 99 - - 0 - +3 288 294 446 156 150 -4.91 0 - 99 0 - - - -1 768 615 409 357 204 -1.49 0 - 99 - 0 - - +3 660 672 815 153 141 2.13 0 - 99 0 - - - 0001 +2 2 38 1054 1050 1014 14.93 99 - 99 - - - - 0002 -1 1107 1095 799 306 294 -2.26 99 - - - 99 - - 0003 +1 1081 1096 1239 156 141 -1.06 99 99 - - - - - -2 1711 1552 1388 321 162 -8.78 0 - 99 - - 0 - +3 1596 1692 1826 228 132 -4.14 0 - 99 0 - - - -2 1933 1912 1712 219 198 2.89 0 - 99 - - 0 - 0004 +2 1115 1196 2185 1068 987 8.81 99 - 99 - - - - 0005 -2 2314 2278 2045 267 231 1.67 99 - - - - 99 - 0006 +1 2497 2500 3195 696 693 7.36 99 99 - - - - - -1 3267 3012 2866 399 144 -3.71 0 99 - - 0 - - 0007 -3 3485 3455 3282 201 171 -1.03 99 - - - - - 99 0008 +2 3305 3311 3622 315 309 10.33 99 - 99 - - - - 0009 -1 4014 3927 3406 606 519 0.39 99 - - - 99 - - +2 3941 3953 4099 156 144 -5.54 0 99 0 - - - - 0010 +1 3601 3619 4383 780 762 5.76 99 99 - - - - - +1 4576 4576 4698 120 120 -1.24 0 0 0 - 99 - - +2 4535 4601 4873 336 270 1.94 0 - 0 - 99 - - +1 4918 4936 5094 174 156 0.10 0 0 - 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99 - - 0 - 0018 +2 7901 7901 9010 1107 1107 6.26 99 - 99 - - - - 0019 -1 9156 9156 8983 171 171 -2.86 99 - - - 99 - - -1 9405 9285 9157 246 126 -1.48 0 99 - - 0 - - +2 9380 9398 9523 141 123 -13.31 0 99 0 0 - - - +3 9357 9363 9557 198 192 -6.49 0 99 - 0 - - - -1 9645 9543 9412 231 129 -2.34 0 99 - 0 0 - - 0020 +1 8995 9007 9981 984 972 12.19 99 99 - - - - - -1 9981 9918 9646 333 270 -3.80 0 99 - - 0 - - +1 10063 10063 10203 138 138 -6.96 0 0 - 99 - - 0 -3 10229 10214 9978 249 234 -2.02 0 - - 99 - - 0 -1 10293 10281 10099 192 180 2.52 0 - - 99 0 - - +2 10373 10388 10540 165 150 -0.17 0 - 0 99 - - 0 +1 10396 10426 10587 189 159 -13.02 0 0 - 99 - - 0 -3 10661 10517 10374 285 141 -5.00 0 - 0 99 - - 0 -2 10705 10660 10514 189 144 -3.74 0 - - 99 - 0 0 -1 10758 10746 10558 198 186 -2.45 0 - - 99 0 - - -3 10853 10841 10662 189 177 0.92 0 - - 99 - - 0 -3 11087 11033 10854 231 177 -3.60 0 - - 99 - - 0 0021 +3 9975 9990 11138 1161 1146 11.24 99 - - 99 - - - -2 11479 11395 11174 303 219 -5.87 0 - 99 - - 0 - 0022 +2 11081 11180 11842 759 660 10.29 99 - 99 - - - - -2 11869 11644 11480 387 162 5.56 0 - 99 - - 0 - 0023 -3 11873 11873 11751 120 120 5.70 99 - - - - 0 99 -3 12077 12032 11892 183 138 1.99 0 - - 99 - - 0 -2 12244 12139 11972 270 165 1.33 0 - - 99 - 0 - 0024 +3 11850 11853 12248 396 393 11.79 99 - - 99 - - - -3 12272 12245 12078 192 165 -1.95 0 - - 99 - 0 0 +3 12408 12414 12557 147 141 -0.19 0 - - 0 - 99 - 0025 -2 13096 13087 12365 729 720 11.00 99 - - - - 99 - +3 13116 13242 13469 351 225 -3.27 0 - - 0 - - 99 +1 13441 13444 13644 201 198 -0.65 0 0 - - 0 - 99 +3 13491 13587 13751 258 162 0.65 0 - - 0 - - 99 -1 13920 13806 13672 246 132 -12.29 0 - - - 0 - 99 0026 -3 14087 14084 13074 1011 1008 5.17 99 - - - - - 99 0027 +1 13723 13894 14421 696 525 0.35 99 99 - - - - - +3 14157 14190 14426 267 234 -0.03 0 - - 0 - - 99 -1 14565 14553 14416 147 135 -13.12 0 - - - 0 - 99 +3 14544 14583 14807 261 222 0.67 0 - - 0 - - 99 -1 14994 14970 14827 165 141 -8.22 0 - - - 0 - 99 +3 14880 14886 15098 216 210 0.19 0 - 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99 +1 18745 18763 18954 207 189 -2.84 0 0 - - - 99 - +2 18875 18959 19081 204 120 0.74 0 - 0 - - 99 - 0037 -2 19171 19096 18581 588 513 13.56 99 - - - - 99 - +1 19141 19147 19332 189 183 -1.73 0 0 - - 99 - - +3 19296 19350 19607 309 255 -1.87 0 - - 0 99 - - -3 19841 19823 19680 159 141 -4.79 0 - - - 99 - 0 +2 19736 19766 19912 174 144 -1.44 0 - 0 - 99 - - +1 19849 19915 20178 327 261 -1.70 0 0 - - 99 - 0 -3 20264 20066 19902 360 162 -5.00 0 0 - - 99 - 0 +2 20306 20327 20518 210 189 -3.05 0 0 0 - 99 - - +1 20218 20317 20529 309 210 -2.04 0 0 - - 99 - - +1 20530 20560 20730 198 168 -2.48 0 0 - - 99 - - 0038 -1 21126 21117 19123 2001 1992 11.82 99 - - - 99 - -