Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_barnesiae.result/NZ_KB8946551.8.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_barnesiae.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_barnesiae.result/NZ_KB8946551.8.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_barnesiae.result/NZ_KB8946551.8.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_barnesiae.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_KB8946551.8.AOI_01 Sequence length = 21143 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 0001 +2 2 11 394 390 381 15.53 99 - 99 - - - - -2 418 391 32 384 357 -1.23 0 - 99 - - 0 - +3 423 510 692 267 180 -1.54 0 - - 0 - - 99 +1 646 646 798 150 150 -2.77 0 0 - - - - 99 -2 1030 874 743 285 129 -7.01 0 - - - - 0 99 +3 822 831 1169 345 336 -0.32 0 - - 0 - - 99 +1 973 1084 1218 243 132 2.53 0 0 - - - - 99 0002 -3 1271 1259 480 789 777 9.37 99 - - - - - 99 0003 -3 1658 1592 1272 384 318 8.87 99 - - - - - 99 -1 2133 2130 1921 210 207 -6.86 0 - - 0 0 - 99 -2 2197 2161 1985 210 174 2.32 0 - - 0 - 0 99 +3 1647 1992 2231 582 237 -0.83 0 - - 0 - - 99 +1 2008 2056 2283 273 225 1.13 0 0 - - - - 99 0004 -3 2399 2363 1659 738 702 8.70 99 - - - - - 99 +2 2330 2342 2506 174 162 -1.22 0 - 0 99 - - - 0005 +3 2232 2322 2570 336 246 0.56 99 - - 99 - - - 0006 +1 2554 2572 2709 153 135 7.58 37 37 - - 0 - 62 +3 2601 2736 2873 270 135 5.02 0 0 - 0 - - 99 +1 2710 2713 2934 222 219 -3.92 0 0 - - - - 99 -2 2989 2881 2759 228 120 -6.23 0 0 - - - 0 99 +3 2874 3033 3272 396 237 1.70 0 - - 0 - - 99 0007 -3 3458 3416 2400 1056 1014 10.72 99 - - - - - 99 0008 +3 3273 3396 3545 270 147 5.50 99 - - 99 - - - -1 3903 3804 3646 255 156 -6.67 0 - - 99 0 0 - -2 3946 3745 3554 390 189 -1.11 0 - - 99 - 0 - -3 4010 3932 3717 291 213 4.38 0 - - 99 - 0 0 -1 4065 4050 3922 141 126 -9.66 0 - - 99 0 - - 0009 +3 3546 3594 4100 552 504 13.23 99 - - 99 - - - -2 4507 4498 4340 165 156 1.59 0 0 99 - - 0 0 0010 +2 3995 4097 4573 576 474 11.82 99 - 99 - - - - -3 4727 4526 4329 396 195 -6.65 0 0 99 - - - 0 -1 4854 4818 4621 231 195 3.45 0 99 - - 0 - - -3 4859 4850 4728 129 120 2.93 0 99 - 0 0 - 0 0011 +1 4237 4645 5019 780 372 13.60 99 99 - - - - - -1 5082 5016 4855 225 159 6.86 0 99 - - 0 - - -2 5182 5170 5039 141 129 1.34 0 - - 99 - 0 - +2 5204 5294 5416 210 120 -4.34 0 - 0 99 - 0 - -2 5467 5374 5231 234 141 2.82 0 - 0 99 - 0 - +2 5417 5462 5659 240 195 -5.74 0 - 0 99 - - - -3 5726 5720 5508 216 210 3.21 0 - - 99 - - 0 -2 5737 5716 5588 147 126 -1.12 0 - - 99 - 0 0 -1 5889 5883 5761 126 120 -21.93 0 - - 99 0 - - 0012 +3 4983 5016 5930 945 912 9.81 99 - - 99 - - - 0013 +3 5931 5991 6353 420 360 1.46 99 - - 99 - - - 0014 -3 6596 6569 6003 591 564 15.06 99 - - - - - 99 0015 +3 6354 6489 6635 279 144 2.16 99 - - 99 - - - 0016 +1 6577 6589 6711 132 120 -6.14 99 99 - - - - - 0017 -1 6918 6870 6691 225 177 -2.40 99 - - - 99 - - 0018 +2 6746 6761 6922 174 159 4.17 99 - 99 - 0 0 - 0019 -2 6994 6976 6695 297 279 -8.29 99 - - - - 99 - 0020 +2 6935 6962 7102 165 138 -5.09 99 - 99 - - - - -2 7222 7165 7010 210 153 -1.86 0 - - 99 - 0 - -2 7618 7579 7418 198 159 1.06 0 - - 99 - 0 - 0021 +3 6969 7104 7751 780 645 13.68 99 - - 99 - - - 0022 -1 8007 7902 7687 318 213 -4.18 99 - - - 99 - - -2 8287 8158 7937 348 219 2.88 0 - 99 - - 0 - +1 8071 8164 8346 273 180 -12.45 0 0 99 - - - 0 -1 8499 8463 8341 156 120 -2.11 0 - 99 0 0 0 - -1 8715 8697 8524 189 171 -1.25 0 - 99 - 0 0 - +1 8665 8698 8832 165 132 -5.10 0 0 99 - - 0 - -2 8842 8710 8288 552 420 -0.49 0 - 99 - - 0 - 0023 +2 7724 7775 8848 1122 1071 8.61 99 - 99 - - - - +3 8796 8982 9107 309 123 -6.10 0 99 - 0 0 - 0 -3 9149 9086 8955 192 129 4.01 0 99 - 0 0 - 0 -3 9464 9437 9264 198 171 1.43 0 99 - - 0 - 0 0024 -1 9483 9267 8716 765 549 -0.95 99 - - - 99 - - -3 9809 9791 9669 138 120 2.87 0 99 - 0 0 - 0 0025 +1 8833 8845 9819 984 972 11.91 99 99 - - - - - -1 9891 9813 9484 405 327 3.45 0 99 - - 0 - - +1 9823 9859 9981 156 120 -0.04 5 5 2 - - 92 - 0026 -2 10153 9976 9836 315 138 0.56 81 16 2 - - 81 - -1 10212 10149 9997 213 150 -5.53 0 - - 99 0 0 0 -2 10396 10360 10193 201 165 -2.05 0 - 0 99 - 0 - +1 10369 10372 10602 231 228 -11.28 0 0 - 99 - - - -3 10670 10631 10494 174 135 -6.19 0 - 0 99 - - 0 -2 10678 10660 10499 177 159 -3.30 0 - 0 99 - 0 0 +2 10388 10538 10684 294 144 -12.82 0 - 0 99 - - - -3 10934 10922 10671 261 249 6.47 0 - - 99 - - 0 +2 10685 10694 10966 279 270 -5.96 0 - 0 99 - - - +1 10909 10921 11055 144 132 -1.31 0 0 - 99 0 - - 0027 +3 9918 9969 11153 1233 1182 13.87 99 - - 99 - - - +1 11104 11110 11247 141 135 -6.20 0 0 99 - - - 0 -3 11294 11183 11061 231 120 -2.93 0 - 99 - - - 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99 0 - 0 -1 19566 19554 19378 186 174 -8.14 0 0 - 99 0 - 0 0044 +3 19068 19113 19583 513 468 12.78 99 - - 99 - - - 0045 -3 19652 19631 19230 420 399 5.31 99 - - - - - 99 0046 -1 19797 19791 19636 159 153 0.06 99 - - - 99 - - -3 20063 20054 19908 153 144 -9.76 0 - 99 - - - 0 -1 20256 20052 19930 324 120 -3.16 0 - 99 - 0 - 0 +1 20164 20206 20340 174 132 -14.28 0 0 99 - - 0 - -3 20489 20462 20289 198 171 -9.06 0 - 99 - - 0 0 +3 20355 20367 20522 165 153 0.40 0 - 99 0 - 0 - -2 20665 20434 20108 555 324 1.29 0 - 99 - - 0 - 0047 +2 19736 19790 20776 1038 984 9.82 99 - 99 - - - - 0048 -2 20791 20791 20666 123 123 -4.96 99 - - - - 99 - -3 21143 21092 20874 267 216 3.04 0 99 - - 0 - 0