Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_acidifaciens.result/NZ_CDPR010001251.598.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_acidifaciens.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_acidifaciens.result/NZ_CDPR010001251.598.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_acidifaciens.result/NZ_CDPR010001251.598.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_acidifaciens.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_CDPR010001251.598.AOI_01 Sequence length = 9223 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 -3 440 362 207 231 153 -1.72 0 99 - - - - 0 -1 621 453 277 342 174 -0.61 0 99 - - 0 - - 0001 +1 1 4 660 657 654 10.85 99 99 - - - - - 0002 +3 459 465 671 210 204 -4.82 99 - - 99 - - - 0003 -3 1199 866 657 540 207 2.50 99 - - - - - 99 -1 1254 1236 1102 150 132 -7.21 0 - - 99 0 - - -2 1411 1333 1172 237 159 -4.16 0 - - 99 - 0 - -2 1732 1705 1565 165 138 -5.25 0 - - 99 - 0 0 -3 1751 1631 1200 549 429 1.28 0 - - 99 - - 0 0004 +3 672 687 1760 1086 1071 10.71 99 - - 99 - - - +3 1848 1872 2051 201 177 -3.26 0 - 99 0 - 0 - 0005 -2 2155 2005 1733 420 270 0.15 99 - - - - 99 - -1 2376 2301 2119 255 180 -3.69 0 - 99 - 0 - - -1 2727 2724 2581 144 141 -3.76 0 - 99 - 0 0 - 0006 +2 1748 1757 2731 981 972 10.24 99 - 99 - - - - -2 2770 2293 2156 612 135 -2.48 0 - 99 - 0 0 - +1 2812 2812 2976 162 162 -5.42 0 0 - 99 - - 0 -3 3026 2987 2712 312 273 1.02 0 - - 99 - - 0 +1 3193 3208 3336 141 126 -8.28 0 0 - 99 - - - -2 3454 3409 3242 210 165 -6.14 0 - - 99 - 0 0 -1 3507 3414 3268 237 144 -15.30 0 - - 99 0 0 0 -3 3599 3587 3411 186 174 2.47 0 - - 99 - - 0 +1 3574 3574 3708 132 132 -4.61 0 0 - 99 - - - -3 3836 3782 3600 234 180 1.45 0 - - 99 - - 0 0007 +3 2706 2715 3887 1179 1170 10.08 99 - - 99 - - - -2 4369 4312 4163 204 147 0.66 0 - 99 - - 0 - +1 4228 4249 4383 153 132 -0.57 0 0 99 - - - - 0008 +2 3830 3935 4579 747 642 11.08 99 - 99 - - - - -3 4916 4877 4710 204 165 -2.87 0 99 - - - - 0 0009 +1 4660 4681 4986 324 303 8.38 99 99 - - - - - 0010 +2 4799 4802 4990 189 186 0.60 99 - 99 - - - - 0011 -1 5010 5007 4831 177 174 0.26 99 - - - 99 - - 0012 +2 5045 5066 5257 210 189 -0.38 99 - 99 - - - - +1 5188 5188 5619 429 429 -1.23 0 0 - - 99 - - +2 5477 5552 5680 201 126 -2.97 0 - 0 - 99 - - +1 5620 5623 5784 162 159 -0.77 0 0 - - 99 - - +1 5788 5788 5949 159 159 0.39 0 0 0 - 99 - - 0013 -1 6090 6075 5107 981 966 9.41 99 - - - 99 - - 0014 +2 5759 5993 6220 459 225 -0.28 99 - 99 - - - - +3 6147 6195 6359 210 162 -0.61 0 - - 0 - 99 - +2 6221 6362 6484 261 120 0.58 0 - 0 - - 99 - -3 6557 6545 6378 177 165 -6.48 0 - - - - 99 0 +2 6485 6632 6799 312 165 1.77 0 - 0 - - 99 - +2 6803 6845 7267 462 420 -1.77 0 - 0 - - 99 - 0015 -2 7390 7357 6104 1284 1251 9.35 99 - - - - 99 - 0016 +3 7275 7275 7430 153 153 3.58 99 - - 99 - - - 0017 -2 7750 7708 7478 270 228 1.25 99 - - - - 99 - 0018 +3 7590 7596 7805 213 207 1.51 99 - - 99 - - - 0019 +1 7636 7696 7827 189 129 -2.26 99 99 - - - - - -1 8010 7998 7876 132 120 -3.88 0 - 99 - 0 - - 0020 +2 7880 7922 8221 339 297 1.72 99 - 99 - - - - +2 8222 8264 8404 180 138 -4.82 0 0 0 - 99 - - +1 8254 8284 8472 216 186 -4.40 0 0 - - 99 - - +1 8731 8749 8943 210 192 0.98 0 0 - - 99 - - 0021 -1 9222 9183 8098 1122 1083 9.31 99 - - - 99 - -