{
"AOIs": [ 
{
"name": "NZ_BLLS010001661.1663.AOI_01",
"filename": "/data/pg-molgen/USERS/Vicky/Genomes_Bacteroidales/Bacteriodaceae/Bacteroides_acidifaciens/GCF_000613385.1_ASM61338v1_genomic.fna",
"color": "gray",
"yline": 10,
"xstart": 5,
"points": [ {"x":0,"y":10}, {"x":800,"y":10} ]
}
],
"Genes": [
{
"name": "LapBotD",
"orfname": "orf00001",
"gene_start": 26,
"gene_end": 1333,
"gene_strand": "+",
"real_start": 29,
"real_end": 1336 ,
"real_strand": "+",
"name": "LapBotD",
"color":     "#6ba3ff",
"yline":     10,
"angle":     -60,
"xtext":     8.31192660550459,
"motifs":    "PF02624",
"function":  "Uncharacterized protein MJ1094 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=MJ1094 PE=1 SV=3",
"annotation":"Species='-'<br>match=30.519%|Evalue=2.08e-07<br>UniRef:<a href=http://www.uniprot.org/uniprot/sp|Q58494|Y1094_METJA>sp|Q58494|Y1094_METJA</a>",
"protein":"MNYSFINKSLNAVSTELGILYHLVSSPSCAQDPKILGYGIWPCNTVYLGPEKFEGRSSGCGYDQEGCLFSTIGESAERYAPTFYDSKELVFASYNELSIEKEAIHPNQIALFHDKQFDSNNNQKITKLTPDLKISWVPTVDLVNNRKITYVPAQLIFLPFTKDNKWITYNTSTGLAAHINYHKAILNAIFECIERDSFVLTWMQKIAAPKIIISEDIQQYINERFTAKCEWHFFDITYDLEIPTVFGICFGEADYGSFVAVGSSTRATIGEALKKVILEIGQTAPYFRYVLGKKKEENWIPTNDFSKIKNFEDHSAFYLKRHDLWHVFDDWRNIVPSKHIDFHQKQELSDVEQILRCLRVFKTKGYNVLFKDITTPDIRQFGYYSIKIYIPQLIQMGGSYSWYFLGSQRLYTVPKQFGYTCNGFENLNHYPHPFP",
"dna":"ATGAACTATTCTTTTATAAATAAAAGTCTTAATGCTGTATCAACAGAATTAGGAATTTTGTACCATTTGGTTTCATCTCCAAGTTGCGCACAAGATCCTAAAATCCTTGGGTATGGTATTTGGCCATGTAATACAGTGTATTTAGGGCCTGAAAAATTCGAAGGGCGTAGTTCTGGATGTGGTTATGATCAGGAAGGATGTTTGTTTTCTACAATTGGGGAATCTGCAGAAAGATATGCACCGACTTTTTATGACAGTAAAGAATTGGTATTTGCTTCATATAATGAATTATCTATAGAAAAAGAGGCAATACATCCAAATCAGATTGCTTTATTCCATGATAAACAATTTGATTCAAATAACAATCAAAAAATCACAAAACTTACTCCAGATTTGAAAATTTCTTGGGTTCCGACTGTAGATTTGGTAAATAATAGAAAAATAACATATGTTCCTGCACAATTGATTTTCCTCCCGTTTACTAAAGATAACAAATGGATAACATACAACACCTCTACAGGTCTTGCTGCACACATTAATTATCATAAAGCTATTTTGAATGCGATATTTGAATGTATTGAACGAGATTCATTTGTGTTAACTTGGATGCAAAAGATTGCTGCTCCTAAAATTATCATATCAGAAGATATACAACAATATATAAATGAGAGATTTACTGCAAAATGTGAATGGCATTTTTTTGATATTACATATGATTTAGAGATTCCAACTGTATTTGGTATATGCTTTGGCGAAGCTGATTATGGTAGTTTTGTAGCTGTCGGATCATCAACACGGGCTACTATTGGTGAAGCTCTAAAAAAAGTAATATTAGAAATCGGACAAACAGCACCATATTTCAGATATGTTTTAGGTAAAAAGAAAGAAGAGAATTGGATACCCACAAATGATTTCTCTAAAATTAAAAATTTTGAAGATCATTCAGCTTTCTATCTAAAACGCCATGATTTGTGGCATGTTTTTGATGATTGGAGAAACATTGTACCCAGTAAACATATCGATTTTCATCAGAAGCAAGAATTAAGCGATGTGGAGCAAATCTTAAGATGTTTAAGAGTATTTAAAACAAAAGGATACAATGTGCTATTTAAAGATATAACGACTCCTGATATAAGACAATTTGGGTATTATAGTATAAAAATATATATACCTCAATTAATACAAATGGGAGGTTCATATTCGTGGTATTTTTTGGGGAGTCAAAGATTGTACACTGTTCCTAAGCAATTCGGATATACTTGTAACGGATTTGAAAATCTAAATCATTATCCACATCCTTTTCCA",
"points": [{"x":0.318042813455657,"y":0},{"x":0.318042813455657,"y":2},{"x":15.9058103975535,"y":2},{"x":16.3058103975535,"y":1},{"x":15.9058103975535,"y":0}]}
,{
"name": "Cyclodehydration",
"orfname": "orf00003",
"gene_start": 1368,
"gene_end": 2219,
"gene_strand": "+",
"real_start": 1371,
"real_end": 2222 ,
"real_strand": "+",
"name": "Cyclodehydration",
"color":     "#6ba3ff",
"yline":     10,
"angle":     -60,
"xtext":     21.9388379204893,
"motifs":    "PF00881",
"function":  "Putative nitroreductase MJ1384 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=MJ1384 PE=3 SV=1",
"annotation":"Species='-'<br>match=30.811%|Evalue=2.50e-21<br>UniRef:<a href=http://www.uniprot.org/uniprot/sp|Q58779|Y1384_METJA>sp|Q58779|Y1384_METJA</a>",
"protein":"MDDKLQKKLSKLDVTIFGKKNIEESLAMLYHENSKFNKYKLRKNGERIEAFNSPYIIARAAQPYKIYPANISIDLNLYKMAPQVALHEILALRRSLRQYNENYKISLNEIAYILYNSYGVTKTFKIADSFEADGNWGLRNVPSAGGLYPLELYIVILNGHISSGIYHYRSDTNTLELIKEGNFLDYLRENMQCEPYVNISTASAVIFSTGIFERVAIKYGDRAYRFLIQESGIVGQTITLLLESIGLGSCWIGAYIDDMINELLEIDGVYESVNNVIVIGKKK",
"dna":"ATGGACGATAAATTACAGAAAAAACTCTCAAAGTTAGATGTTACAATATTTGGCAAAAAAAATATTGAGGAATCTTTAGCCATGTTGTATCACGAAAATTCAAAGTTTAACAAATATAAATTAAGAAAAAATGGTGAACGAATAGAAGCATTTAATAGTCCTTATATTATCGCTAGAGCTGCACAACCATATAAAATTTACCCTGCCAATATTTCTATAGATTTGAATTTATACAAAATGGCACCTCAAGTTGCTCTCCATGAAATTTTGGCTCTTCGCAGATCACTTAGACAATATAACGAGAATTATAAGATTTCATTGAATGAAATAGCGTATATACTATATAATTCTTATGGAGTGACCAAAACATTTAAAATTGCAGATTCATTCGAAGCCGATGGAAATTGGGGGCTTCGCAATGTTCCGTCAGCAGGAGGTTTGTACCCTTTAGAGTTATATATTGTTATTTTGAATGGTCACATTAGTTCTGGTATATATCATTACCGATCAGATACTAATACATTAGAGTTAATAAAAGAAGGAAACTTTCTAGATTATTTACGAGAAAATATGCAATGTGAACCATATGTAAATATCTCTACGGCGTCCGCAGTCATTTTTTCTACAGGAATTTTTGAAAGAGTTGCTATAAAATATGGAGATAGAGCTTATCGTTTTTTAATACAAGAATCGGGTATTGTTGGACAGACTATAACTCTTCTTCTCGAATCTATTGGTTTGGGTTCTTGTTGGATTGGAGCTTATATAGATGACATGATAAATGAATTGCTAGAAATAGATGGCGTATATGAGTCGGTAAACAATGTTATAGTAATTGGAAAAAAGAAA",
"points": [{"x":16.7339449541284,"y":0},{"x":16.7339449541284,"y":2},{"x":26.7437308868502,"y":2},{"x":27.1437308868502,"y":1},{"x":26.7437308868502,"y":0}]}
,{
"name": "ABC",
"orfname": "orf00004",
"gene_start": 2222,
"gene_end": 3079,
"gene_strand": "+",
"real_start": 2225,
"real_end": 3082 ,
"real_strand": "+",
"name": "ABC",
"color":     "#ff3f3f",
"yline":     10,
"angle":     -60,
"xtext":     32.4220183486239,
"motifs":    "PF00005",
"function":  "ABC transporter ATP-binding protein NatA OS=Bacillus subtilis (strain 168) OX=224308 GN=natA PE=1 SV=1",
"annotation":"Species='-'<br>match=29.630%|Evalue=1.34e-26<br>UniRef:<a href=http://www.uniprot.org/uniprot/sp|P46903|NATA_BACSU>sp|P46903|NATA_BACSU</a>",
"protein":"MDNLITLQNVSYFRNEKKILDKISFTIGRGEKIALLGSNGAGKSTLIDIMTQDINPTDGNIFFDRTSVFPKNRTGVLYGCLPLFPYLRVFEQIRYFTAIYRLDYKEVEKEYYKRLGIDKIENSFIYQLSQGERQKLGLLISIINNPELLIWDEPFSNLDPTTIDTFWGIVNSNKKTIFYSTHNWEDAMKKSTKVCLLHEGRLLEEPKNPVELLSEFQKQNVLIVGIDNLVSEVIINYKYYKLDGCYYVFWNTDEPIVTEISKLTTNFSVKKISLIDYYRYRTSKL",
"dna":"ATGGACAATCTTATCACTTTGCAAAATGTCTCTTATTTTAGAAATGAAAAAAAAATATTGGACAAAATTAGCTTCACTATTGGTAGAGGTGAAAAAATAGCATTGCTTGGAAGTAATGGGGCTGGTAAATCGACTCTAATTGACATAATGACACAAGATATTAATCCAACAGATGGTAATATATTTTTTGATCGTACGTCAGTATTTCCCAAAAATAGAACTGGTGTTTTATATGGTTGTTTACCATTATTCCCTTACTTAAGAGTATTTGAGCAAATACGATATTTTACAGCTATTTATAGGCTTGATTATAAAGAGGTTGAAAAAGAATACTATAAACGACTCGGCATAGATAAAATTGAAAACTCTTTTATTTATCAATTATCGCAAGGTGAAAGACAAAAACTTGGACTGTTAATTTCAATCATTAATAATCCCGAACTACTAATTTGGGATGAACCTTTCAGTAATTTAGATCCTACTACTATTGACACCTTTTGGGGAATTGTTAACTCAAATAAAAAAACAATTTTTTACTCTACTCATAACTGGGAAGATGCCATGAAAAAATCCACTAAAGTATGCCTGTTACACGAAGGTAGATTATTAGAGGAGCCTAAAAATCCAGTAGAACTACTATCAGAATTTCAAAAGCAAAATGTTCTTATTGTCGGCATTGACAATCTTGTTTCTGAAGTAATAATAAATTATAAATACTATAAATTAGATGGTTGTTATTATGTCTTCTGGAACACTGATGAGCCTATTGTAACTGAAATATCTAAATTAACAACTAATTTTTCAGTAAAAAAAATCAGTCTTATAGATTACTATAGATACAGAACCTCTAAATTA",
"points": [{"x":27.1804281345566,"y":0},{"x":27.1804281345566,"y":2},{"x":37.2636085626911,"y":2},{"x":37.6636085626911,"y":1},{"x":37.2636085626911,"y":0}]}
,{
"name": "orf00005",
"orfname": "orf00005",
"gene_start": 3085,
"gene_end": 3798,
"gene_strand": "+",
"real_start": 3088,
"real_end": 3801 ,
"real_strand": "+",
"name": "orf00005",
"color":     "#d5dce8",
"yline":     10,
"angle":     -60,
"xtext":     42.0978593272171,
"motifs":    "",
"function":  "",
"annotation":"",
"protein":"MIKVFFSLVYYRIVEYLHVRQAIFFSVVFPIFLFVIMTSLWGNVNVDYSNFMLTGVIGMTIASEGIFSIGQSVKRFYMSGMIKYIRKMPFSVLFYMMSIVVAKIINLMVIIALMYAIGIVFFDCTITPMDIVNAISGLLIGLTLFSFIGLVLYFINIRMESEKSIVHIVYLLTIFVSDVFYSVGDISVVIKTMGDILPLNGILNIIRYGIYDWSILPWAVIPVCVFIILIKKIEVKR",
"dna":"ATGATAAAAGTCTTTTTTAGTCTTGTATATTATAGAATAGTAGAATATCTACATGTAAGGCAAGCTATCTTCTTTTCTGTAGTTTTTCCTATATTCTTGTTTGTGATAATGACATCACTATGGGGTAATGTTAACGTTGATTATTCAAATTTCATGTTAACGGGTGTCATTGGAATGACCATAGCGAGTGAAGGAATATTTTCCATTGGTCAGAGTGTGAAAAGGTTTTATATGTCTGGAATGATAAAGTACATACGAAAAATGCCTTTTAGTGTGTTATTTTATATGATGAGTATAGTTGTGGCAAAGATAATTAATTTAATGGTTATCATAGCCCTTATGTATGCGATAGGAATCGTGTTTTTTGACTGTACGATAACGCCTATGGATATAGTTAATGCTATTAGTGGTTTATTAATAGGACTTACCCTATTTTCTTTTATCGGGCTTGTTCTTTATTTTATTAACATACGGATGGAGTCAGAAAAAAGCATTGTACATATTGTTTATTTATTAACTATTTTTGTCAGTGATGTTTTTTATTCTGTAGGAGATATCAGCGTTGTTATCAAAACTATGGGGGATATTCTACCTTTAAATGGTATCCTAAATATTATTAGATATGGAATATATGACTGGTCAATACTTCCATGGGCTGTTATTCCGGTATGCGTTTTTATCATTTTGATTAAAAAAATTGAAGTAAAAAGA",
"points": [{"x":37.737003058104,"y":0},{"x":37.737003058104,"y":2},{"x":46.0587155963303,"y":2},{"x":46.4587155963303,"y":1},{"x":46.0587155963303,"y":0}]}
,{
"name": "orf00006",
"orfname": "orf00006",
"gene_start": 3803,
"gene_end": 4312,
"gene_strand": "+",
"real_start": 3806,
"real_end": 4315 ,
"real_strand": "+",
"name": "orf00006",
"color":     "#d5dce8",
"yline":     10,
"angle":     -60,
"xtext":     49.6330275229358,
"motifs":    "",
"function":  "",
"annotation":"",
"protein":"MIEIIQLLLFSLIIIFLHELGHYIVLKIFNIPIYSMGVSCQPVPHFYIRYKWPTSIIKHCAIILSGSLTTILGLSILLLFINYNMMKMLFAVYFFQLICETNPFFSDYVFAYVIYKNKIINSSPQSLNVYRSLINKYMFSFAWYIHFILWSILIILLIRLIDFKDILNI",
"dna":"ATGATTGAGATTATTCAATTATTGCTTTTTTCCTTGATAATTATATTTCTTCACGAATTAGGACATTATATAGTTCTGAAGATATTTAATATACCTATTTATAGCATGGGAGTCTCATGTCAACCTGTACCGCATTTTTATATTCGATATAAGTGGCCAACAAGTATTATTAAACATTGTGCTATTATTCTTTCTGGTTCGCTAACGACAATCTTGGGACTTAGTATATTGCTTTTATTTATTAATTATAATATGATGAAGATGTTGTTTGCAGTATATTTTTTTCAGTTAATATGTGAAACTAATCCATTCTTTTCAGATTATGTCTTTGCATATGTAATTTATAAAAATAAAATAATAAACTCAAGCCCACAAAGTTTGAATGTTTATCGTTCATTAATTAATAAATACATGTTTAGTTTTGCTTGGTATATTCATTTCATATTATGGAGTATTCTTATTATTTTATTAATACGATTAATTGATTTTAAGGATATACTAAATATA",
"points": [{"x":46.519877675841,"y":0},{"x":46.519877675841,"y":2},{"x":52.3461773700306,"y":2},{"x":52.7461773700306,"y":1},{"x":52.3461773700306,"y":0}]}
,{
"name": "orf00007",
"orfname": "orf00007",
"gene_start": 4370,
"gene_end": 4963,
"gene_strand": "+",
"real_start": 4373,
"real_end": 4966 ,
"real_strand": "+",
"name": "orf00007",
"color":     "#d5dce8",
"yline":     10,
"angle":     -60,
"xtext":     57.0825688073394,
"motifs":    "",
"function":  "",
"annotation":"",
"protein":"MENKKLNETESIELIIQMIRNTRRNIVVGGGNQFIVWGVSILSASIIVTILNLFINNHLCNFAWFIIPVIGCVWNKGLKHKEKLFTYVDKILKYIWITCCIFCVLTPVFIGVSYHFNGSELLYSIIPFIELLIVSIGVAISGLVLNAKYVVVSGFGGFVVSFITFINIPHIIPLTYAIWAIACMIVPGIYIKYKRLC",
"dna":"ATGGAAAATAAGAAATTAAATGAAACTGAGAGTATTGAACTAATAATACAAATGATCAGAAACACTCGGAGAAATATTGTTGTTGGAGGTGGGAATCAATTTATAGTATGGGGAGTATCTATTCTCTCAGCATCTATAATTGTAACTATACTTAATTTATTTATAAACAATCATCTTTGCAATTTTGCTTGGTTCATTATACCCGTTATTGGTTGTGTCTGGAATAAAGGATTGAAGCATAAGGAAAAACTATTTACTTATGTCGACAAGATATTAAAATATATATGGATAACTTGTTGCATTTTCTGTGTTTTAACACCAGTGTTTATCGGGGTGTCATATCATTTTAATGGTTCCGAATTATTGTATAGCATTATCCCATTTATTGAATTATTGATAGTATCTATCGGTGTTGCAATATCAGGTTTAGTTTTAAATGCAAAGTATGTAGTAGTTTCAGGCTTTGGAGGATTTGTTGTTTCATTTATTACATTTATCAATATTCCACACATTATACCATTAACGTATGCAATTTGGGCTATAGCTTGTATGATTGTTCCAGGAATATATATAAAATACAAAAGGTTATGC",
"points": [{"x":53.4556574923547,"y":0},{"x":53.4556574923547,"y":2},{"x":60.3094801223242,"y":2},{"x":60.7094801223242,"y":1},{"x":60.3094801223242,"y":0}]}
,{
"name": "orf00009",
"orfname": "orf00009",
"gene_start": 4957,
"gene_end": 5241,
"gene_strand": "+",
"real_start": 4960,
"real_end": 5244 ,
"real_strand": "+",
"name": "orf00009",
"color":     "#8fbcb9",
"yline":     10,
"angle":     -60,
"xtext":     62.3730886850153,
"motifs":    "",
"function":  "Uncharacterized protein MJ0432 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=MJ0432 PE=4 SV=1",
"annotation":"Species='-'<br>match=31.646%|Evalue=8.88e-10<br>UniRef:<a href=http://www.uniprot.org/uniprot/sp|Q57874|Y432_METJA>sp|Q57874|Y432_METJA</a>",
"protein":"MLKELNPLLHSELRLAIMSILLNAEKADFTYLLETCHATSGNLSIQLSKLQKANYICIQKEFVGKRPQTMCFITEQGKLAFEQYVENLKSYINL",
"dna":"ATGCTAAAAGAATTAAATCCGCTACTTCATTCTGAATTGAGATTGGCTATAATGTCAATTCTTTTAAATGCAGAAAAAGCTGATTTTACTTATCTACTTGAAACGTGTCATGCAACCTCAGGGAATCTTAGTATCCAACTTAGCAAATTACAAAAGGCTAATTATATATGCATACAAAAAGAATTTGTTGGTAAACGTCCTCAAACGATGTGCTTCATAACAGAACAAGGGAAATTGGCTTTTGAGCAATATGTTGAAAACTTGAAAAGCTATATAAATTTA",
"points": [{"x":60.6360856269113,"y":0},{"x":60.6360856269113,"y":2},{"x":63.7100917431193,"y":2},{"x":64.1100917431193,"y":1},{"x":63.7100917431193,"y":0}]}
,{
"name": "orf00010",
"orfname": "orf00010",
"gene_start": 5271,
"gene_end": 6059,
"gene_strand": "+",
"real_start": 5274,
"real_end": 6062 ,
"real_strand": "+",
"name": "orf00010",
"color":     "#d5dce8",
"yline":     10,
"angle":     -60,
"xtext":     69.2966360856269,
"motifs":    "",
"function":  "",
"annotation":"",
"protein":"MKSLLLISIIALSVVFQSSYATTSVCFYMNDQICVETQEEQNVHNRIMDAFMNSFVEQNNSKMLSLIDEFSSLYHKSNNSIFLYWKGYTHYYCSIFYLKKSETGKSYEELKKGIDALESIKKKNSEDCALLSMLHSFSCQFLKFPKVIQASKSATDYIERALKLDDNNPRVYYVLANNDYYTPETYGGGNKVEEYALKALSISSIQKIANPYLPSWGRQESYELLTNYYIKKNNMKQAKKYIELGLLEYPDNYTLKYNKSKL",
"dna":"ATGAAGTCTCTATTATTAATTTCAATTATTGCACTAAGTGTAGTATTTCAGAGCTCCTATGCCACTACTAGCGTATGTTTTTACATGAATGATCAAATTTGTGTGGAAACACAAGAAGAACAGAATGTTCATAATAGAATAATGGATGCTTTTATGAATTCATTTGTTGAACAAAACAACTCAAAAATGTTATCACTTATTGATGAATTTTCATCATTGTATCACAAAAGCAATAATTCTATTTTCCTATATTGGAAAGGATATACTCATTATTACTGTAGTATATTTTATTTAAAAAAAAGTGAAACAGGTAAATCTTACGAAGAATTAAAGAAAGGTATTGACGCATTAGAATCAATAAAGAAAAAGAATTCGGAAGATTGTGCCCTGCTTTCAATGTTACACAGTTTCTCATGTCAGTTTTTAAAATTTCCAAAAGTAATTCAAGCGTCTAAAAGTGCAACTGATTATATTGAGCGTGCTTTAAAACTTGATGATAACAATCCAAGAGTATACTATGTCTTGGCTAATAATGATTATTATACTCCCGAAACCTATGGTGGAGGAAATAAGGTTGAAGAATATGCATTGAAAGCTCTTTCTATTTCTTCTATACAAAAAATTGCCAATCCTTATTTACCTTCCTGGGGCAGACAAGAGAGCTATGAATTACTGACAAATTATTATATAAAAAAAAACAATATGAAACAAGCAAAAAAATACATTGAGTTAGGACTATTAGAATATCCCGATAATTATACTCTAAAGTACAATAAGTCTAAGTTG",
"points": [{"x":64.4770642201835,"y":0},{"x":64.4770642201835,"y":2},{"x":73.7162079510703,"y":2},{"x":74.1162079510703,"y":1},{"x":73.7162079510703,"y":0}]}
]}