Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_abscessus.result/NZ_HE9971841.0.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_abscessus.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_abscessus.result/NZ_HE9971841.0.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_abscessus.result/NZ_HE9971841.0.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_abscessus.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_HE9971841.0.AOI_01 Sequence length = 21137 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 -2 280 196 47 231 147 -9.14 0 - - 0 - 0 99 +1 223 244 369 144 123 0.96 0 0 0 0 - - 99 +1 370 376 540 168 162 -3.63 0 0 - 0 0 - 99 +3 9 117 563 552 444 0.23 0 - - 0 - - 99 +2 410 599 745 333 144 -2.25 4 84 4 10 - - - 0001 -2 919 865 740 177 123 -7.72 99 - - - - 99 - -3 1001 998 852 147 144 -7.77 0 99 - - - - 0 0002 -2 1564 1426 1292 270 132 -8.55 99 - - - - 99 - +2 1337 1457 1612 273 153 -13.16 0 - 0 99 - - 0 -2 1897 1804 1682 213 120 -0.59 0 - 0 99 - 0 0 0003 +3 1302 1314 2093 789 777 13.31 99 - - 99 - - - +2 1679 1910 2197 516 285 -7.62 0 - 0 - - - 99 0004 -3 2216 2144 1323 891 819 -1.05 0 - - 99 - - 0 +2 2615 2615 2803 186 186 -14.76 0 99 0 0 0 - - -1 2907 2574 2404 501 168 -0.29 0 99 - 0 0 - - 0005 +1 2170 2320 2916 744 594 10.73 99 99 - 0 - - - -2 3286 3280 3119 165 159 -2.64 0 - - 99 - 0 0 -3 3347 2948 2826 519 120 -2.16 0 - - 99 - - 0 +2 3209 3242 3367 156 123 -12.82 0 - 0 99 - - - -2 4312 4279 4115 195 162 -0.69 0 - - 99 - 0 0 0006 -3 4457 4415 3393 1062 1020 -3.96 0 0 0 99 - - 0 +2 4172 4403 4666 492 261 -8.27 0 - 0 99 - - - -3 4994 4748 4458 534 288 -1.27 0 - - 99 - - 0 -2 5011 4969 4823 186 144 -1.00 0 - 0 99 0 0 0 -2 5194 5179 5045 147 132 -1.22 0 - 0 99 - 0 - +2 4985 5111 5269 282 156 -9.79 0 - 0 99 - - - -3 5420 5399 5187 231 210 -2.50 0 - - 99 - - 0 0007 +3 2184 2988 5435 3249 2445 13.94 99 - - 99 - - - 0008 +2 5270 5294 5464 192 168 -3.94 99 - 99 - - - - -2 5728 5722 5555 171 165 1.24 0 - - 99 - 0 0 +2 5777 5780 5959 180 177 -19.43 0 - 0 99 - - 0 -3 6074 5672 5550 522 120 -0.59 0 - - 99 - - 0 -3 6350 6245 6075 273 168 -6.52 0 - 0 99 - - 0 +2 6050 6251 6373 321 120 -11.58 0 0 0 99 - - - +1 6097 6187 6384 285 195 -13.60 0 0 - 99 - - - +1 6385 6388 6516 129 126 -4.09 0 0 - 99 - - - -3 6875 6842 6405 468 435 -0.82 0 - - 99 - - 0 -1 6924 6921 6694 228 225 -7.63 0 - - 99 0 - - 0009 +3 5436 5520 7013 1575 1491 11.83 99 - - 99 - - - 0010 -3 7067 7043 6918 147 123 -0.43 99 - - - - - 99 0011 +1 6961 6970 7116 153 144 -6.61 99 99 - - - - - 0012 +2 7184 7214 7345 159 129 -0.83 22 - 22 65 - - 11 -2 7486 7444 7310 174 132 -4.26 0 - - 99 - 0 0 -1 7581 7572 7441 138 129 -18.59 0 - 0 91 0 - 8 +2 7346 7463 7630 282 165 -13.11 0 - 0 98 - - 1 0013 -3 7679 7424 7212 465 210 -0.59 99 - - - - - 99 +2 7631 7682 7840 207 156 -11.93 0 - 0 48 - 51 - 0014 -2 8104 7798 7598 504 198 0.61 97 - - 2 - 97 - -3 8237 8189 8037 198 150 -5.83 0 - - 99 0 - 0 -2 8377 8350 8225 150 123 0.85 0 - 0 99 - 0 - +2 8171 8192 8389 216 195 -5.55 0 - 0 99 - - - +1 8308 8317 8442 132 123 -14.00 0 0 - 99 - - 0 -3 8504 8384 8238 264 144 -3.33 0 - 0 99 - - 0 0015 +3 7218 7278 8546 1326 1266 3.94 99 - - 99 - - - +1 8485 8548 8802 315 252 -4.82 0 0 99 - - - - -2 8896 8797 8645 249 150 -5.04 0 0 99 - - 0 - +1 8878 8908 9039 159 129 -9.63 0 0 98 - - 1 - -2 9040 9019 8897 141 120 -4.30 0 0 99 - - 0 - 0016 +2 8396 8726 9331 933 603 0.64 99 - 99 - - - - -3 9566 9554 9405 159 147 -8.05 0 0 - - 99 - 0 -2 9649 9613 9476 171 135 -14.89 0 0 - - 99 0 - +3 9672 9690 9830 156 138 -9.84 0 0 - 0 99 - 0 -3 9830 9782 9627 201 153 -11.98 0 0 - - 99 - 0 0017 -1 9984 9981 9316 666 663 8.30 99 0 - - 99 - - +2 9704 9854 10006 300 150 -0.63 2 97 2 - - - - 0018 +1 9202 9838 10038 834 198 -1.74 99 99 - - - - - -2 10336 10234 10058 276 174 -8.70 0 0 - - 99 0 - +2 10208 10208 10342 132 132 -2.30 0 0 0 - 99 - - +1 10039 10390 10533 492 141 5.09 0 0 0 0 99 - - 0019 -1 11145 11142 9985 1158 1155 10.48 99 - - - 99 - - 0020 +1 10816 10930 11304 486 372 -2.07 99 99 - - - - - -1 11358 11328 11161 195 165 -11.64 0 - - - 0 - 99 +1 11344 11344 11508 162 162 -2.00 0 0 - 0 - - 99 -2 11611 11515 11354 255 159 -11.06 0 - - 0 - 0 99 0021 +3 11202 11220 12140 936 918 -0.64 0 - - 0 - - 99 0022 -3 12299 12041 11139 1158 900 6.62 99 - - - - - 99 +3 12150 12219 12347 195 126 -0.38 7 - - 7 - 92 - -3 12530 12428 12300 228 126 -13.08 0 - 7 - - 92 0 +2 12242 12368 12643 399 273 -1.20 0 - 0 - - 99 - +3 12471 12474 12710 237 234 -3.51 0 - - 0 - 99 - -1 12921 12900 12778 141 120 -9.32 0 - 0 - 0 99 - +2 12689 13016 13216 525 198 -0.26 0 - 0 - - 99 - 0023 -2 13225 13222 12125 1098 1095 3.46 99 - - - - 99 - +1 13108 13354 13512 402 156 -3.04 0 0 - - 99 - - -2 13804 13750 13544 258 204 -13.62 0 - - - 99 0 - +1 13672 13711 13926 252 213 -2.30 0 0 - - 99 - - 0024 -1 13953 13932 13213 738 717 10.71 99 - - - 99 - - 0025 +2 13724 13781 14014 288 231 0.33 99 - 99 - - - - 0026 -3 14117 14060 13923 192 135 -4.17 99 - - - - - 99 -3 14315 14303 14175 138 126 -9.35 0 - 99 - - - 0 -1 14439 14391 14251 186 138 -5.92 0 - 99 - 0 - - -1 14829 14814 14644 183 168 0.56 0 0 99 - 0 - - +1 14854 14917 15069 213 150 -8.08 0 0 99 - 0 - - 0027 +2 14174 14225 15097 921 870 9.88 99 - 99 - - - - -1 15099 15045 14872 225 171 0.77 0 0 99 - 0 - - 0028 -2 15193 15103 14960 231 141 1.58 73 - - - 26 73 - -3 15431 15332 15186 243 144 6.92 0 - 0 99 - - 0 +2 15110 15203 15457 345 252 -13.82 0 - 0 99 - - - -2 15481 15463 15329 150 132 -3.79 0 - - 99 - 0 - -1 15711 15693 15571 138 120 -15.56 0 - 0 99 0 - 0 +2 15554 15881 16096 540 213 -11.29 0 - 0 99 - - 0 0029 +3 15093 15102 16121 1026 1017 11.92 99 - - 99 - - - -3 16151 15899 15432 717 465 2.00 0 - - 99 - - 0 +3 16200 16230 16361 159 129 -7.75 0 - 99 0 - 0 - -2 16564 16312 16100 462 210 0.61 0 - 99 - - 0 - -2 16777 16771 16595 180 174 -2.32 0 0 99 - 0 0 - -1 16830 16581 16378 450 201 3.20 0 - 99 - 0 - - +1 16585 16615 16839 252 222 -10.79 0 0 99 - - - - +3 16782 16842 16964 180 120 -6.01 0 - 99 0 - 0 0 -2 17164 17080 16778 384 300 1.55 0 - 99 - - 0 - +3 17136 17148 17309 171 159 -12.18 0 - 99 0 - - - -1 17325 17325 17194 129 129 -1.23 0 - 99 - 0 0 - +3 17310 17331 17456 144 123 -11.73 0 0 99 0 - 0 - -2 17497 17356 17165 330 189 -2.33 0 - 99 - - 0 - -2 17644 17626 17498 144 126 -3.26 0 - 99 - - 0 - +1 17554 17584 17778 222 192 -17.24 0 0 99 - - - - -2 17806 17791 17645 159 144 1.62 0 - 99 - - 0 - 0030 +2 16097 16121 17827 1728 1704 13.23 99 - 99 - - - - 0031 -3 18509 18428 18231 276 195 -2.63 99 - - - - - 99 -1 18696 18684 18517 177 165 -3.56 0 - 99 - 0 0 - 0032 -2 19009 18601 18422 585 177 -6.16 99 - - - - 99 - -1 19044 18993 18697 345 294 -0.11 0 0 99 - 0 0 - +1 19069 19108 19308 237 198 -14.11 0 0 99 - - - - -1 19356 19332 19201 153 129 -4.25 0 - 99 - 0 0 - -2 19561 19429 19181 378 246 1.16 0 - 99 - - 0 - -2 19810 19735 19610 198 123 -2.18 0 0 99 - - 0 - +1 19378 19429 19860 480 429 -13.11 0 0 99 - - - - -2 20002 19984 19829 171 153 -3.21 0 - 99 - - 0 - +3 19923 19923 20150 225 225 -11.72 0 - 99 0 - - - -2 20443 20323 20003 438 318 -5.22 0 - 99 - - 0 - +1 20293 20299 20514 219 213 -8.51 0 0 99 - - - - -1 20679 20667 20500 177 165 -0.13 0 - 99 - 0 - - 0033 +2 18506 18524 20785 2277 2259 12.48 99 - 99 - - - - -3 20813 20729 20592 219 135 -14.92 0 - 99 - - 0 0 -2 20917 20755 20570 345 183 -4.20 0 - 99 - - 0 - -1 21105 21039 20734 369 303 -1.79 0 99 - 0 0 - -