# Program:featureCounts v2.0.4; Command:"featureCounts" "-s" "2" "-M" "-t" "gene" "-g" "locus_tag" "-a" "/scratch/p127804/PROJECTS/PrimBio/genome/Vibrio_cholerae_O1_biovar_El_Tor_N16961.gff" "-o" "/scratch/p127804/PROJECTS/PrimBio/results/ctrl3.2.counts" "/scratch/p127804/PROJECTS/PrimBio/results/ctrl3.sorted.bam" Geneid Chr Start End Strand Length /scratch/p127804/PROJECTS/PrimBio/results/ctrl3.sorted.bam VC_0001 AE003852.1 235 402 - 168 0 VC_0002 AE003852.1 372 806 - 435 154 VC_0003 AE003852.1 816 2210 - 1395 280 VC_0004 AE003852.1 2271 3896 - 1626 492 VC_0005 AE003852.1 3899 4156 - 258 20 VC_0006 AE003852.1 4123 4479 - 357 64 VC_0007 AE003852.1 4492 4629 - 138 834 VC_0008 AE003852.1 4871 5608 - 738 95 VC_0009 AE003852.1 5605 6276 - 672 12 VC_0010 AE003852.1 6354 7100 - 747 46 VC_0011 AE003852.1 7224 7352 + 129 23 VC_0012 AE003852.1 7397 8815 + 1419 985 VC_0013 AE003852.1 8873 9973 + 1101 628 VC_0014 AE003852.1 9991 11082 + 1092 1232 VC_0015 AE003852.1 11103 13520 + 2418 3445 VC_0016 AE003852.1 13876 14367 + 492 399 VC_0017 AE003852.1 14377 14493 + 117 68 VC_0018 AE003852.1 14769 15206 + 438 1433 VC_0019 AE003852.1 15294 16550 - 1257 199 VC_0020 AE003852.1 16869 18935 - 2067 465 VC_0021 AE003852.1 18950 19942 - 993 316 VC_0022 AE003852.1 20235 20837 + 603 91 VC_0023 AE003852.1 20943 21200 + 258 7051 VC_0024 AE003852.1 21287 21535 - 249 31 VC_0025 AE003852.1 21656 21856 + 201 120 VC_0026 AE003852.1 22028 23008 - 981 707 VC_0027 AE003852.1 23256 24788 - 1533 616 VC_0028 AE003852.1 24792 26633 - 1842 903 VC_0029 AE003852.1 26643 27602 - 960 315 VC_0030 AE003852.1 27593 27877 - 285 17 VC_0031 AE003852.1 27889 29535 - 1647 521 VC_0032 AE003852.1 30069 31592 + 1524 73 VC_0033 AE003852.1 31682 32566 + 885 109 VC_0034 AE003852.1 32644 33246 - 603 183 VC_0035 AE003852.1 33277 34299 - 1023 88 VC_0036 AE003852.1 34311 35798 - 1488 1822 VC_0037 AE003852.1 36152 36430 - 279 657 VC_0038 AE003852.1 36527 36694 - 168 5016 VC_0039 AE003852.1 36928 37770 + 843 361 VC_0040 AE003852.1 37848 38495 + 648 2737 VC_0041 AE003852.1 38534 39190 - 657 115 VC_0042 AE003852.1 39103 40548 - 1446 280 VC_0043 AE003852.1 40560 41936 - 1377 460 VC_0044 AE003852.1 41998 43302 - 1305 432 VC_0045 AE003852.1 43334 44281 - 948 253 VC_0046 AE003852.1 44299 44808 - 510 2051 VC_0047 AE003852.1 44900 46075 + 1176 128 VC_0048 AE003852.1 46075 47190 + 1116 433 VC_0049 AE003852.1 47193 47669 + 477 3428 VC_0050 AE003852.1 47679 48251 + 573 1556 VC_0051 AE003852.1 48324 49457 - 1134 243 VC_0052 AE003852.1 49461 49946 - 486 191 VC_0053 AE003852.1 49961 50086 + 126 3 VC_0054 AE003852.1 50104 50670 + 567 167 VC_0055 AE003852.1 50689 51606 + 918 117 VC_0056 AE003852.1 51668 52504 + 837 161 VC_0057 AE003852.1 52501 52776 + 276 39 VC_0058 AE003852.1 52757 53311 - 555 669 VC_0059 AE003852.1 53497 53637 + 141 920 VC_r001 AE003852.1 53823 55357 + 1535 860517 VC_t001 AE003852.1 55421 55496 + 76 12 VC_r002 AE003852.1 55784 58670 + 2887 702767 VC_r003 AE003852.1 58798 58915 + 118 91 VC_t002 AE003852.1 58941 59017 + 77 7 VC_t003 AE003852.1 59047 59123 + 77 4 VC_0060 AE003852.1 59356 59736 + 381 582 VC_0061 AE003852.1 59988 61925 + 1938 186 VC_0062 AE003852.1 61929 63251 + 1323 41 VC_0063 AE003852.1 63238 64014 + 777 32 VC_0064 AE003852.1 63957 64214 + 258 4 VC_0065 AE003852.1 64220 64990 + 771 58 VC_0066 AE003852.1 64987 66099 + 1113 106 VC_0067 AE003852.1 66324 68117 - 1794 359 VC_0068 AE003852.1 68250 69233 - 984 61 VC_0069 AE003852.1 69296 70498 + 1203 462 VC_0070 AE003852.1 70602 70886 + 285 342 VC_0071 AE003852.1 70975 71436 - 462 169 VC_0072 AE003852.1 71512 73818 + 2307 619 VC_0073 AE003852.1 73785 74663 + 879 146 VC_0074 AE003852.1 74781 75170 + 390 34 VC_0075 AE003852.1 75266 76153 - 888 1751 VC_0076 AE003852.1 76210 76635 - 426 20904 VC_0077 AE003852.1 76681 76776 + 96 0 VC_0078 AE003852.1 76782 77327 + 546 2534 VC_0079 AE003852.1 77403 77726 + 324 1145 VC_0080 AE003852.1 77859 79055 + 1197 430 VC_0081 AE003852.1 79052 79963 - 912 97 VC_0082 AE003852.1 80077 81618 + 1542 911 VC_0083 AE003852.1 81663 82445 + 783 683 VC_0084 AE003852.1 82454 83077 + 624 932 VC_0085 AE003852.1 83074 84708 + 1635 1372 VC_0086 AE003852.1 84768 85016 + 249 782 VC_0087 AE003852.1 85020 85421 + 402 532 VC_0088 AE003852.1 85510 86262 + 753 137 VC_0089 AE003852.1 86574 87575 + 1002 1556 VC_0090 AE003852.1 87681 89045 - 1365 372 VC_0091 AE003852.1 89116 89985 - 870 114 VC_0092 AE003852.1 90013 90642 - 630 586 VC_0093 AE003852.1 90953 93388 + 2436 284 VC_0094 AE003852.1 93464 94318 - 855 394 VC_0095 AE003852.1 94319 94870 - 552 310 VC_0096 AE003852.1 94893 94991 - 99 9 VC_0097 AE003852.1 95062 95472 + 411 678 VC_0098 AE003852.1 95592 97571 - 1980 383 VC_0099 AE003852.1 97946 98779 - 834 803 VC_0100 AE003852.1 98786 99106 - 321 130 VC_0101 AE003852.1 99187 99402 - 216 2 VC_0102 AE003852.1 99635 99775 - 141 83 VC_0103 AE003852.1 99867 100634 - 768 37 VC_0104 AE003852.1 100690 100824 - 135 2 VC_0105 AE003852.1 100811 101854 + 1044 499 VC_0106 AE003852.1 101958 102389 + 432 36 VC_0107 AE003852.1 102908 103045 - 138 1 VC_0108 AE003852.1 103098 105902 + 2805 816 VC_0109 AE003852.1 105855 105968 - 114 2 VC_0110 AE003852.1 106165 106299 + 135 1 VC_0111 AE003852.1 106649 107311 - 663 402 VC_0112 AE003852.1 107409 108080 + 672 11219 VC_0113 AE003852.1 108252 108920 + 669 145 VC_0114 AE003852.1 108920 109468 + 549 144 VC_0115 AE003852.1 109475 109966 + 492 271 VC_0116 AE003852.1 110051 111493 + 1443 440 VC_0117 AE003852.1 111557 112753 - 1197 508 VC_0118 AE003852.1 112750 113949 - 1200 520 VC_0119 AE003852.1 113933 114715 - 783 1395 VC_0120 AE003852.1 114761 115714 - 954 346 VC_0121 AE003852.1 115891 116037 - 147 9 VC_0122 AE003852.1 116053 118584 + 2532 1805 VC_0123 AE003852.1 118690 119004 - 315 592 VC_0124 AE003852.1 118981 119196 + 216 129 VC_0125 AE003852.1 119229 120482 + 1254 551 VC_0126 AE003852.1 120452 121324 + 873 823 VC_0127 AE003852.1 121338 122036 + 699 112 VC_0128 AE003852.1 122005 122940 + 936 212 VC_0129 AE003852.1 122943 123662 + 720 171 VC_0130 AE003852.1 123772 126261 + 2490 942 VC_0131 AE003852.1 126294 126890 - 597 252 VC_0132 AE003852.1 126887 128431 - 1545 1040 VC_0133 AE003852.1 128444 128632 + 189 21 VC_0134 AE003852.1 128715 129542 - 828 1025 VC_0135 AE003852.1 129657 130673 - 1017 389 VC_0136 AE003852.1 130748 131365 + 618 204 VC_0137 AE003852.1 131313 132611 + 1299 294 VC_0138 AE003852.1 132619 132738 - 120 17 VC_0139 AE003852.1 132791 133261 - 471 341 VC_0140 AE003852.1 133431 133760 - 330 84 VC_0141 AE003852.1 133799 133903 + 105 60 VC_0142 AE003852.1 133965 134333 + 369 3402 VC_0143 AE003852.1 134836 135093 + 258 10 VC_0144 AE003852.1 135210 135839 + 630 184 VC_0145 AE003852.1 135888 136154 - 267 868 VC_0146 AE003852.1 136151 136750 - 600 816 VC_0147 AE003852.1 136954 138129 + 1176 1875 VC_0148 AE003852.1 138151 138852 + 702 397 VC_0149 AE003852.1 138842 139834 + 993 793 VC_0150 AE003852.1 140004 140864 + 861 4989 VC_0151 AE003852.1 141066 142466 - 1401 1046 VC_0152 AE003852.1 142774 143415 + 642 451 VC_0153 AE003852.1 143455 143826 + 372 126 VC_0154 AE003852.1 143863 144972 - 1110 132 VC_0156 AE003852.1 145370 147205 + 1836 381 VC_0157 AE003852.1 147278 148885 - 1608 132 VC_0158 AE003852.1 149278 150075 + 798 155 VC_0159 AE003852.1 150041 150499 - 459 3407 VC_0160 AE003852.1 150905 151024 + 120 302 VC_r004 AE003852.1 151059 152593 + 1535 1131439 VC_t004 AE003852.1 152663 152738 + 76 9 VC_r005 AE003852.1 153026 155912 + 2887 598873 VC_r006 AE003852.1 156041 156158 + 118 211 VC_t005 AE003852.1 156206 156296 + 91 50 VC_0161 AE003852.1 156407 157303 - 897 147 VC_0162 AE003852.1 157441 158925 + 1485 773 VC_0163 AE003852.1 159052 159303 - 252 2627 VC_0164 AE003852.1 159419 162529 - 3111 1162 VC_0165 AE003852.1 162541 163647 - 1107 446 VC_0166 AE003852.1 163666 164262 - 597 585 VC_0167 AE003852.1 164408 166423 + 2016 342 VC_0168 AE003852.1 166490 166897 - 408 3281 VC_t006 AE003852.1 167187 167263 + 77 74 VC_t007 AE003852.1 167299 167374 + 76 39 VC_t008 AE003852.1 167436 167512 + 77 98 VC_t009 AE003852.1 167583 167658 + 76 77 VC_t010 AE003852.1 167720 167796 + 77 15 VC_0169 AE003852.1 168232 168399 - 168 2 VC_0170 AE003852.1 168532 170247 + 1716 567 VC_0171 AE003852.1 170267 171895 + 1629 1185 VC_0172 AE003852.1 171999 173027 + 1029 132 VC_0173 AE003852.1 173030 173968 + 939 187 VC_0174 AE003852.1 174143 175090 + 948 445 VC_0175 AE003852.1 175343 176941 - 1599 962 VC_0176 AE003852.1 177450 177758 - 309 217 VC_0177 AE003852.1 177861 178424 + 564 60 VC_0178 AE003852.1 179338 180405 + 1068 624 VC_0179 AE003852.1 180419 181729 + 1311 1183 VC_0180 AE003852.1 181732 183486 + 1755 2030 VC_0181 AE003852.1 183476 183946 + 471 59 VC_0182 AE003852.1 183957 184388 - 432 167 VC_0183 AE003852.1 184360 186471 - 2112 165 VC_0184 AE003852.1 186481 188169 - 1689 19 VC_0185 AE003852.1 188166 189380 - 1215 36 VC_0186 AE003852.1 189457 190821 - 1365 1573 VC_0187 AE003852.1 190915 191754 - 840 349 VC_0188 AE003852.1 192034 194076 + 2043 659 VC_0189 AE003852.1 194101 194199 + 99 0 VC_0190 AE003852.1 194214 196385 + 2172 318 VC_0191 AE003852.1 197130 197798 - 669 112 VC_0192 AE003852.1 197873 198685 - 813 162 VC_0193 AE003852.1 198722 198817 - 96 0 VC_0194 AE003852.1 198833 200599 - 1767 25 VC_0195 AE003852.1 200761 201669 - 909 33 VC_0196 AE003852.1 201803 203665 + 1863 210 VC_0197 AE003852.1 203658 203957 + 300 29 VC_0198 AE003852.1 204113 204490 + 378 40 VC_0199 AE003852.1 204526 206361 - 1836 84 VC_0200 AE003852.1 206433 208589 + 2157 92 VC_0201 AE003852.1 208648 209505 + 858 26 VC_0202 AE003852.1 209496 210455 + 960 17 VC_0203 AE003852.1 210452 212413 + 1962 93 VC_0204 AE003852.1 212440 213288 - 849 824 VC_0205 AE003852.1 213331 213522 + 192 0 VC_0206 AE003852.1 213504 214421 + 918 38 VC_0207 AE003852.1 214449 215897 + 1449 45 VC_0208 AE003852.1 216004 216492 - 489 119 VC_0209 AE003852.1 216558 217424 - 867 414 VC_0210 AE003852.1 217531 218304 + 774 403 VC_0211 AE003852.1 218667 219311 + 645 148 VC_0212 AE003852.1 219397 220374 - 978 466 VC_0213 AE003852.1 220385 221341 - 957 290 VC_0214 AE003852.1 221338 221970 - 633 126 VC_0215 AE003852.1 222087 223286 - 1200 370 VC_0216 AE003852.1 223454 225148 + 1695 32812 VC_0217 AE003852.1 225260 225934 + 675 159 VC_0218 AE003852.1 226229 226465 + 237 1903 VC_0219 AE003852.1 226479 226646 + 168 310 VC_0220 AE003852.1 226867 227355 + 489 79 VC_0221 AE003852.1 227365 228174 + 810 104 VC_0222 AE003852.1 228271 228765 - 495 132 VC_0223 AE003852.1 228876 229913 + 1038 214 VC_0224 AE003852.1 229975 230754 - 780 64 VC_0225 AE003852.1 230797 231870 - 1074 133 VC_0226 AE003852.1 231873 231968 - 96 0 VC_0227 AE003852.1 231950 232705 + 756 306 VC_0228 AE003852.1 232709 233668 + 960 150 VC_0229 AE003852.1 233672 234601 - 930 81 VC_0230 AE003852.1 234598 235341 - 744 34 VC_0231 AE003852.1 235338 236921 - 1584 114 VC_0232 AE003852.1 236912 237292 - 381 32 VC_0233 AE003852.1 237289 238608 - 1320 77 VC_0234 AE003852.1 238569 239357 - 789 63 VC_0235 AE003852.1 239354 240403 - 1050 64 VC_0236 AE003852.1 240400 241440 - 1041 117 VC_0237 AE003852.1 241437 242636 - 1200 161 VC_0238 AE003852.1 242638 243204 - 567 226 VC_0239 AE003852.1 243212 244984 - 1773 1029 VC_0240 AE003852.1 245143 246087 - 945 724 VC_0241 AE003852.1 246529 247926 + 1398 2327 VC_0242 AE003852.1 247929 249320 + 1392 1876 VC_0243 AE003852.1 249323 250444 + 1122 3388 VC_0244 AE003852.1 250455 251558 + 1104 3315 VC_0245 AE003852.1 251555 252946 + 1392 4345 VC_0246 AE003852.1 252918 253712 + 795 1309 VC_0247 AE003852.1 253651 254466 + 816 2868 VC_0248 AE003852.1 254505 254747 + 243 629 VC_0249 AE003852.1 254753 256168 + 1416 3811 VC_0250 AE003852.1 256177 257301 + 1125 1901 VC_0251 AE003852.1 257292 259769 + 2478 7201 VC_0252 AE003852.1 259839 260405 + 567 4245 VC_0253 AE003852.1 260555 260635 + 81 791 VC_0254 AE003852.1 260793 261920 + 1128 4301 VC_0255 AE003852.1 262098 262319 + 222 689 VC_0256 AE003852.1 262326 262670 + 345 141 VC_0257 AE003852.1 262667 263539 + 873 81 VC_0258 AE003852.1 263536 264219 + 684 2050 VC_0259 AE003852.1 264254 265486 - 1233 500 VC_0260 AE003852.1 265374 267239 - 1866 703 VC_0261 AE003852.1 267300 267440 - 141 5 VC_0262 AE003852.1 267392 268363 + 972 823 VC_0263 AE003852.1 268371 268925 + 555 104 VC_0264 AE003852.1 269068 270435 + 1368 186 VC_0265 AE003852.1 270697 271935 - 1239 202 VC_0266 AE003852.1 271990 272562 - 573 139 VC_0267 AE003852.1 272562 273485 - 924 328 VC_0268 AE003852.1 273478 274146 + 669 127 VC_0269 AE003852.1 274509 275708 + 1200 470 VC_0270 AE003852.1 275674 276654 + 981 537 VC_0271 AE003852.1 277002 278060 - 1059 227 VC_0272 AE003852.1 278069 278233 + 165 8 VC_0273 AE003852.1 278432 278704 + 273 20874 VC_0274 AE003852.1 278705 279439 + 735 397 VC_0275 AE003852.1 279539 280828 - 1290 120 VC_0276 AE003852.1 280887 282479 - 1593 428 VC_0277 AE003852.1 282765 283166 + 402 197 VC_0278 AE003852.1 283327 284952 + 1626 786 VC_0279 AE003852.1 285375 285503 + 129 2 VC_0280 AE003852.1 285652 286989 + 1338 41 VC_0281 AE003852.1 287033 289234 + 2202 25 VC_0282 AE003852.1 289352 291022 - 1671 1127 VC_0283 AE003852.1 291257 291934 - 678 5 VC_0284 AE003852.1 291955 293997 - 2043 28 VC_0285 AE003852.1 294219 294824 - 606 220 VC_0286 AE003852.1 294837 296213 - 1377 207 VC_0287 AE003852.1 296367 296882 + 516 62 VC_0288 AE003852.1 296819 298675 + 1857 213 VC_0289 AE003852.1 298752 299750 - 999 313 VC_0290 AE003852.1 299889 300185 - 297 107 VC_0291 AE003852.1 300209 301204 - 996 158 VC_0292 AE003852.1 301185 301277 - 93 0 VC_0293 AE003852.1 301317 302204 - 888 82 VC_0294 AE003852.1 302185 302301 - 117 0 VC_0295 AE003852.1 302413 303756 - 1344 582 VC_0296 AE003852.1 303771 304361 - 591 204 VC_0297 AE003852.1 304289 304741 - 453 216 VC_0298 AE003852.1 305121 307121 - 2001 94 VC_0299 AE003852.1 307273 307944 - 672 12 VC_0300 AE003852.1 307911 309734 - 1824 18 VC_0301 AE003852.1 309689 309895 - 207 14 VC_0302 AE003852.1 309994 311184 + 1191 149 VC_0303 AE003852.1 311277 314720 + 3444 839 VC_0304 AE003852.1 314843 316336 - 1494 2017 VC_0305 AE003852.1 316344 317660 - 1317 4262 VC_0306 AE003852.1 317772 318098 + 327 943 VC_0307 AE003852.1 318296 319555 + 1260 1012 VC_0308 AE003852.1 319654 320646 + 993 683 VC_0309 AE003852.1 320728 322569 + 1842 354 VC_0311 AE003852.1 322566 322835 + 270 22 VC_0312 AE003852.1 322851 323561 + 711 245 VC_0313 AE003852.1 323721 323816 + 96 5 VC_0314 AE003852.1 323974 324171 + 198 519 VC_r007 AE003852.1 324147 325681 + 1535 858133 VC_t011 AE003852.1 325745 325821 + 77 5 VC_t012 AE003852.1 325830 325905 + 76 15 VC_r008 AE003852.1 326193 329079 + 2887 586022 VC_r009 AE003852.1 329207 329324 + 118 99 VC_t013 AE003852.1 329350 329426 + 77 2 VC_0315 AE003852.1 329711 331051 - 1341 320 VC_0316 AE003852.1 331022 331174 + 153 36 VC_0317 AE003852.1 331146 331592 - 447 111 VC_0318 AE003852.1 331605 332678 + 1074 1827 VC_0319 AE003852.1 332675 333637 + 963 832 VC_0320 AE003852.1 333687 334814 - 1128 117 VC_t014 AE003852.1 334819 334894 + 76 42 VC_t015 AE003852.1 334930 335014 + 85 31 VC_t016 AE003852.1 335050 335124 + 75 6 VC_t017 AE003852.1 335138 335213 + 76 22 VC_0321 AE003852.1 335326 336510 + 1185 5856 VC_0322 AE003852.1 336719 337114 + 396 314 VC_0323 AE003852.1 337130 337678 + 549 513 VC_0324 AE003852.1 337809 338237 + 429 780 VC_0325 AE003852.1 338242 338943 + 702 1355 VC_0326 AE003852.1 339213 339701 + 489 1113 VC_0327 AE003852.1 339768 340133 + 366 501 VC_0328 AE003852.1 340272 344399 + 4128 2499 VC_0329 AE003852.1 344504 348709 + 4206 4951 VC_0330 AE003852.1 348820 349314 - 495 2584 VC_0331 AE003852.1 349459 350268 + 810 96 VC_0332 AE003852.1 350511 351590 + 1080 863 VC_0333 AE003852.1 351596 352324 + 729 545 VC_0334 AE003852.1 352411 353370 + 960 322 VC_0335 AE003852.1 353367 354515 - 1149 669 VC_0336 AE003852.1 354684 356216 - 1533 1385 VC_0337 AE003852.1 356359 357300 - 942 86 VC_0338 AE003852.1 357398 358834 - 1437 1365 VC_0339 AE003852.1 359021 359878 - 858 278 VC_0340 AE003852.1 359871 361034 - 1164 671 VC_0341 AE003852.1 361157 361702 + 546 166 VC_t018 AE003852.1 361861 361936 + 76 32 VC_t019 AE003852.1 361971 362046 + 76 355 VC_t020 AE003852.1 362203 362278 + 76 546 VC_t021 AE003852.1 362318 362394 + 77 15 VC_t022 AE003852.1 362429 362504 + 76 61 VC_t023 AE003852.1 362691 362767 + 77 65 VC_t024 AE003852.1 362810 362886 + 77 20 VC_t025 AE003852.1 362929 363005 + 77 52 VC_0342 AE003852.1 363575 364684 - 1110 220 VC_0343 AE003852.1 364787 365353 + 567 1077 VC_0344 AE003852.1 365320 367065 + 1746 1526 VC_0345 AE003852.1 367072 369033 + 1962 1082 VC_0346 AE003852.1 369030 369977 + 948 4295 VC_0347 AE003852.1 370149 370412 + 264 2814 VC_0348 AE003852.1 370445 371734 + 1290 1521 VC_0349 AE003852.1 371780 372967 + 1188 3117 VC_0350 AE003852.1 372970 373950 + 981 4283 VC_0351 AE003852.1 373993 374199 + 207 68 VC_0352 AE003852.1 374240 374458 - 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