#=GENOME_DIFF	1.0
#=COMMAND	breseq -j 2 -r /data/pg-molgen/harma/genomes/intron_r1t.fna /data/pg-molgen/harma/2021_04/fastq/8A_S8_R1_001.fastq.gz -o /data/pg-molgen/harma/2021_04/results_breseq/HK7_intron2
#=REFSEQ	/data/pg-molgen/harma/genomes/intron_r1t.fna
#=READSEQ	/data/pg-molgen/harma/2021_04/fastq/8A_S8_R1_001.fastq.gz
#=CONVERTED-BASES	1334109450
#=CONVERTED-READS	17788126
#=INPUT-BASES	1334309625
#=INPUT-READS	17790795
#=MAPPED-BASES	228361
#=MAPPED-READS	3262
RA	1	.	Intron	927	0	C	T	bias_e_value=1825.24	bias_p_value=0.998488	consensus_reject=FREQUENCY_CUTOFF	consensus_score=13.4	fisher_strand_p_value=1	frequency=4.483e-01	gene_name=–/–	gene_position=intergenic (–/–)	gene_product=–/–	gene_strand=–/–	ks_quality_p_value=0.945507	locus_tag=–/–	major_base=C	major_cov=16/0	major_frequency=5.517e-01	minor_base=T	minor_cov=13/0	new_cov=13/0	polymorphism_frequency=4.483e-01	polymorphism_score=13.7	prediction=polymorphism	ref_cov=16/0	snp_type=intergenic	total_cov=35/0
MC	2	.	Intron	1	831	0	829	gene_name=–/–	gene_position=intergenic (–/–)	gene_product=–/–	gene_strand=–/–	left_inside_cov=0	left_outside_cov=NA	locus_tag=–/–	right_inside_cov=8	right_outside_cov=9
UN	3	.	Intron	1	832
UN	4	.	Intron	999	1828