#=GENOME_DIFF	1.0
#=CREATED	10:28:18 05 May 2021
#=PROGRAM	breseq 0.35.4 
#=COMMAND	breseq -j 8 -r /data/pg-molgen/harma/genomes/intron_r1t.fna /data/pg-molgen/harma/2021_04/fastq/8A_S8_R1_001.fastq.gz -o /data/pg-molgen/harma/2021_04/results_breseq/HK7_intron
#=REFSEQ	/data/pg-molgen/harma/genomes/intron_r1t.fna
#=READSEQ	/data/pg-molgen/harma/2021_04/fastq/8A_S8_R1_001.fastq.gz
#=CONVERTED-BASES	1334109450
#=CONVERTED-READS	17788126
#=INPUT-BASES	1334309625
#=INPUT-READS	17790795
#=MAPPED-BASES	225840
#=MAPPED-READS	3226
RA	1	.	Intron	785	1	.	T	bias_e_value=892.849	bias_p_value=0.962122	consensus_reject=FREQUENCY_CUTOFF	consensus_score=63.0	fisher_strand_p_value=1	frequency=3.671e-01	ks_quality_p_value=0.737701	major_base=.	major_cov=50/0	major_frequency=6.329e-01	minor_base=T	minor_cov=29/0	new_cov=29/0	polymorphism_frequency=3.671e-01	polymorphism_score=71.9	prediction=polymorphism	ref_cov=50/0	total_cov=79/0
UN	2	.	Intron	1	3
UN	3	.	Intron	928	928