Lmod Warning:
-------------------------------------------------------------------------------
The following dependent module(s) are not currently loaded: GCC/13.2.0
(required by: SAMtools/1.19.2-GCC-13.2.0), XZ/5.4.4-GCCcore-13.2.0 (required
by: SAMtools/1.19.2-GCC-13.2.0), bzip2/1.0.8-GCCcore-13.2.0 (required by:
SAMtools/1.19.2-GCC-13.2.0), ncurses/6.4-GCCcore-13.2.0 (required by:
SAMtools/1.19.2-GCC-13.2.0), zlib/1.2.13-GCCcore-13.2.0 (required by:
SAMtools/1.19.2-GCC-13.2.0)
-------------------------------------------------------------------------------




The following have been reloaded with a version change:
  1) GCC/13.2.0 => GCC/13.3.0
  2) GCCcore/13.2.0 => GCCcore/13.3.0
  3) OpenSSL/1.1 => OpenSSL/3
  4) Python/3.11.5-GCCcore-13.2.0 => Python/3.12.3-GCCcore-13.3.0
  5) SQLite/3.43.1-GCCcore-13.2.0 => SQLite/3.45.3-GCCcore-13.3.0
  6) Tcl/8.6.13-GCCcore-13.2.0 => Tcl/8.6.14-GCCcore-13.3.0
  7) XZ/5.4.4-GCCcore-13.2.0 => XZ/5.4.5-GCCcore-13.3.0
  8) binutils/2.40-GCCcore-13.2.0 => binutils/2.42-GCCcore-13.3.0
  9) bzip2/1.0.8-GCCcore-13.2.0 => bzip2/1.0.8-GCCcore-13.3.0
 10) libffi/3.4.4-GCCcore-13.2.0 => libffi/3.4.5-GCCcore-13.3.0
 11) libreadline/8.2-GCCcore-13.2.0 => libreadline/8.2-GCCcore-13.3.0
 12) ncurses/6.4-GCCcore-13.2.0 => ncurses/6.5-GCCcore-13.3.0
 13) zlib/1.2.13-GCCcore-13.2.0 => zlib/1.3.1-GCCcore-13.3.0


========== Convert SS036_01 ======================================
[bam_sort_core] merging from 0 files and 16 in-memory blocks...

========== Convert SS036_02 ======================================
[bam_sort_core] merging from 0 files and 16 in-memory blocks...

========== Convert SS036_03 ======================================
[bam_sort_core] merging from 0 files and 16 in-memory blocks...

========== Convert SS036_04 ======================================
[bam_sort_core] merging from 0 files and 16 in-memory blocks...

========== Convert SS036_05 ======================================
[bam_sort_core] merging from 0 files and 16 in-memory blocks...

========== Convert SS036_06 ======================================
[bam_sort_core] merging from 0 files and 16 in-memory blocks...

========== Convert SS036_07 ======================================
[bam_sort_core] merging from 0 files and 16 in-memory blocks...

========== Convert SS036_08 ======================================
[bam_sort_core] merging from 0 files and 16 in-memory blocks...
/scratch/public/genomes/AnneTools/Bowtie2LogTable.py:19: SyntaxWarning: invalid escape sequence '\='
  items = re.match("\=+\s(.*)\s\=+", line)
/scratch/public/genomes/AnneTools/Bowtie2LogTable.py:23: SyntaxWarning: invalid escape sequence '\s'
  items = re.match("\s*(\d+).*", line)

###############################################################################
Hábrók Cluster
Job 30959715 for user p127804
Finished at: Sun Aug 30 10:24:11 CEST 2026

Job details:
============

Job ID                         : 30959715
Name                           : 02.bowtie2_Sofia_036.sh
User                           : p127804
Partition                      : regularmedium
Nodes                          : omni3
Number of Nodes                : 1
Cores                          : 32
Number of Tasks                : 1
State                          : COMPLETED  
Submit                         : 2026-08-30T10:03:17
Start                          : 2026-08-30T10:03:18
End                            : 2026-08-30T10:24:07
Reserved walltime              : 1-00:00:00
Used walltime                  :   00:20:49
Used CPU time                  :   02:26:50 (Efficiency: 22.04%)
% User (Computation)           : 98.71%
% System (I/O)                 :  1.29%
Total memory reserved          : 32G
Maximum memory used            : 11.27G
Hints and tips      :
 1) The program efficiency is low. Your program is not using the assigned cores
    effectively. Please check if you are using all the cores you requested.
    You may also need to check the file in- and output pattern of your program.
 *) For more information on these issues see:
    https://wiki.hpc.rug.nl/habrok/additional_information/job_hints

Acknowledgements:
=================

Please see this page for information about acknowledging Hábrók in your publications:

https://wiki.hpc.rug.nl/habrok/introduction/scientific_output

################################################################################