# Program:featureCounts v2.0.4; Command:"featureCounts" "-s" "2" "-M" "-t" "gene" "-g" "locus_tag" "-a" "/scratch/p127804/PROJECTS/Douwe/genomes/St50/St50_ncbi.gff" "-o" "/scratch/p127804/PROJECTS/Douwe/Jennifer_202407_017/results_Streptococcus/St50_5_percent_2.2.counts" "/scratch/p127804/PROJECTS/Douwe/Jennifer_202407_017/results_Streptococcus/St50_5_percent_2.sorted.bam" Geneid Chr Start End Strand Length /scratch/p127804/PROJECTS/Douwe/Jennifer_202407_017/results_Streptococcus/St50_5_percent_2.sorted.bam ST4078_00005 CP065477.1 1 1365 + 1365 3788 ST4078_00010 CP065477.1 1520 2656 + 1137 6096 ST4078_00015 CP065477.1 2707 2898 + 192 197 ST4078_00020 CP065477.1 3111 4226 + 1116 7413 ST4078_00025 CP065477.1 4299 4868 + 570 252 ST4078_00030 CP065477.1 4861 8367 + 3507 3429 ST4078_00035 CP065477.1 8553 8828 + 276 3816 ST4078_00040 CP065477.1 8812 9183 + 372 4074 ST4078_00045 CP065477.1 9183 9314 + 132 421 ST4078_00050 CP065477.1 9311 10603 + 1293 15221 ST4078_00055 CP065477.1 10603 11868 + 1266 1581 ST4078_00060 CP065477.1 11950 12492 + 543 5251 ST4078_00065 CP065477.1 12508 14475 + 1968 17226 ST4078_00080 CP065477.1 17626 19173 + 1548 1689 ST4078_00085 CP065477.1 19228 19300 + 73 37 ST4078_00090 CP065477.1 19447 22346 + 2900 11242 ST4078_00095 CP065477.1 22430 22545 + 116 135 ST4078_00100 CP065477.1 22551 22623 + 73 296 ST4078_00105 CP065477.1 22626 22698 + 73 44 ST4078_00110 CP065477.1 22718 22790 + 73 103 ST4078_00115 CP065477.1 22796 22877 + 82 231 ST4078_00120 CP065477.1 22892 22964 + 73 396 ST4078_00125 CP065477.1 22971 23042 + 72 42 ST4078_00130 CP065477.1 23049 23134 + 86 2924 ST4078_00135 CP065477.1 23149 23222 + 74 98 ST4078_00140 CP065477.1 23230 23303 + 74 6 ST4078_00145 CP065477.1 23309 23382 + 74 145 ST4078_00150 CP065477.1 23397 23470 + 74 52 ST4078_00155 CP065477.1 23490 23579 + 90 1245 ST4078_00160 CP065477.1 23589 23662 + 74 205 ST4078_00165 CP065477.1 23666 23738 + 73 151 ST4078_00170 CP065477.1 23751 23821 + 71 246 ST4078_00175 CP065477.1 23855 23928 + 74 525 ST4078_00180 CP065477.1 23933 24020 + 88 189 ST4078_00185 CP065477.1 24077 24907 + 831 4471 ST4078_00190 CP065477.1 24909 25433 + 525 804 ST4078_00195 CP065477.1 25518 26999 + 1482 61999 ST4078_00200 CP065477.1 27213 28178 + 966 12828 ST4078_00210 CP065477.1 29285 30460 + 1176 3952 ST4078_00215 CP065477.1 30447 31220 + 774 4438 ST4078_00220 CP065477.1 31436 32440 + 1005 4271 ST4078_00225 CP065477.1 32440 32685 + 246 1066 ST4078_00230 CP065477.1 32971 33678 + 708 499 ST4078_00235 CP065477.1 33734 37459 + 3726 1493 ST4078_00240 CP065477.1 37628 39067 + 1440 579 ST4078_00245 CP065477.1 39098 40117 + 1020 405 ST4078_00250 CP065477.1 40117 40671 + 555 177 ST4078_00255 CP065477.1 40740 42287 + 1548 793 ST4078_00265 CP065477.1 43683 44522 - 840 145 ST4078_00270 CP065477.1 44831 46093 + 1263 600 ST4078_00275 CP065477.1 46439 46927 + 489 165 ST4078_00280 CP065477.1 46914 48005 + 1092 488 ST4078_00285 CP065477.1 48198 48953 + 756 955 ST4078_00290 CP065477.1 49025 49189 + 165 201 ST4078_00295 CP065477.1 49468 50766 + 1299 1813 ST4078_00300 CP065477.1 51630 53321 - 1692 3727 ST4078_00310 CP065477.1 54146 55333 + 1188 8460 ST4078_00315 CP065477.1 55418 56611 + 1194 10041 ST4078_00320 CP065477.1 57109 57594 + 486 2045 ST4078_00325 CP065477.1 57598 57789 + 192 1418 ST4078_00330 CP065477.1 57967 58416 + 450 2588 ST4078_00340 CP065477.1 58984 59754 + 771 2735 ST4078_00345 CP065477.1 60498 60926 + 429 950 ST4078_00350 CP065477.1 60926 61285 + 360 568 ST4078_00355 CP065477.1 61278 63836 + 2559 2702 ST4078_00370 CP065477.1 64937 65242 + 306 206 ST4078_00375 CP065477.1 65294 67237 + 1944 2011 ST4078_00380 CP065477.1 67367 67588 + 222 1253 ST4078_00385 CP065477.1 67740 68330 + 591 1392 ST4078_00390 CP065477.1 68337 68891 + 555 811 ST4078_00395 CP065477.1 68987 70258 + 1272 6565 ST4078_00400 CP065477.1 70294 71448 + 1155 4249 ST4078_00405 CP065477.1 71625 72023 + 399 28064 ST4078_00410 CP065477.1 72438 73985 + 1548 1669 ST4078_00415 CP065477.1 74040 74112 + 73 39 ST4078_00420 CP065477.1 74259 77158 + 2900 11350 ST4078_00425 CP065477.1 77242 77357 + 116 130 ST4078_00430 CP065477.1 77363 77435 + 73 335 ST4078_00435 CP065477.1 77440 77510 + 71 194 ST4078_00440 CP065477.1 77544 77617 + 74 510 ST4078_00445 CP065477.1 77624 77695 + 72 29 ST4078_00450 CP065477.1 77704 77793 + 90 1139 ST4078_00455 CP065477.1 77803 77876 + 74 171 ST4078_00460 CP065477.1 77880 77952 + 73 128 ST4078_00465 CP065477.1 77967 78047 + 81 310 ST4078_00470 CP065477.1 78053 78123 + 71 558 ST4078_00475 CP065477.1 78135 78207 + 73 90 ST4078_00480 CP065477.1 78214 78285 + 72 234 ST4078_00485 CP065477.1 78295 78378 + 84 1171 ST4078_00490 CP065477.1 78429 82823 + 4395 4403 ST4078_00495 CP065477.1 82987 84228 + 1242 3158 ST4078_00500 CP065477.1 84248 84478 + 231 739 ST4078_00510 CP065477.1 85129 85680 + 552 706 ST4078_00525 CP065477.1 87974 88044 + 71 314 ST4078_00530 CP065477.1 88359 89126 + 768 62011 ST4078_00535 CP065477.1 89237 90277 + 1041 54694 ST4078_00540 CP065477.1 90387 90857 - 471 2173 ST4078_00545 CP065477.1 91101 91556 + 456 1011 ST4078_00550 CP065477.1 91557 94007 + 2451 8207 ST4078_00560 CP065477.1 95537 96784 - 1248 6857 ST4078_00565 CP065477.1 96993 99218 + 2226 5728 ST4078_00570 CP065477.1 99227 99997 + 771 1455 ST4078_00575 CP065477.1 100070 100690 + 621 1194 ST4078_00580 CP065477.1 101072 102415 + 1344 2242 ST4078_00585 CP065477.1 102408 102809 + 402 446 ST4078_00590 CP065477.1 103092 103247 + 156 82 ST4078_00595 CP065477.1 103323 103511 + 189 66 ST4078_00600 CP065477.1 103582 103824 + 243 96 ST4078_00605 CP065477.1 103872 104615 + 744 2124 ST4078_00610 CP065477.1 104618 105133 + 516 984 ST4078_00615 CP065477.1 105142 106002 + 861 2926 ST4078_00620 CP065477.1 106303 106803 + 501 740 ST4078_00625 CP065477.1 106951 107907 + 957 7080 ST4078_00630 CP065477.1 108116 108562 + 447 25618 ST4078_00635 CP065477.1 108590 108982 + 393 23391 ST4078_00645 CP065477.1 109457 109720 + 264 264 ST4078_00650 CP065477.1 109970 110074 + 105 117 ST4078_00660 CP065477.1 113029 114306 + 1278 285 ST4078_00665 CP065477.1 114330 115595 + 1266 397 ST4078_00675 CP065477.1 116672 117889 - 1218 314 ST4078_00680 CP065477.1 117900 118172 - 273 63 ST4078_00685 CP065477.1 118234 119424 - 1191 1737 ST4078_00690 CP065477.1 119671 120165 - 495 70 ST4078_00695 CP065477.1 120436 121118 - 683 249 ST4078_00700 CP065477.1 121274 122491 + 1218 2949 ST4078_00705 CP065477.1 122812 123078 + 267 382 ST4078_00710 CP065477.1 123096 124433 + 1338 1660 ST4078_00720 CP065477.1 124917 125714 + 798 1462 ST4078_00725 CP065477.1 125711 126295 + 585 2177 ST4078_00730 CP065477.1 126485 127567 + 1083 17129 ST4078_00735 CP065477.1 127560 128174 + 615 8592 ST4078_00740 CP065477.1 128303 130126 + 1824 47989 ST4078_00745 CP065477.1 130554 131687 + 1134 12167 ST4078_00750 CP065477.1 131793 132539 + 747 4567 ST4078_00755 CP065477.1 132532 133293 + 762 3046 ST4078_00760 CP065477.1 133306 133752 + 447 2187 ST4078_00765 CP065477.1 134137 135684 + 1548 1613 ST4078_00770 CP065477.1 135739 135811 + 73 44 ST4078_00775 CP065477.1 135958 138857 + 2900 11263 ST4078_00780 CP065477.1 138941 139056 + 116 139 ST4078_00785 CP065477.1 139062 139134 + 73 319 ST4078_00790 CP065477.1 139137 139209 + 73 62 ST4078_00795 CP065477.1 139229 139301 + 73 115 ST4078_00800 CP065477.1 139307 139388 + 82 235 ST4078_00805 CP065477.1 139403 139475 + 73 438 ST4078_00810 CP065477.1 139482 139553 + 72 41 ST4078_00815 CP065477.1 139560 139645 + 86 2926 ST4078_00820 CP065477.1 139660 139733 + 74 109 ST4078_00825 CP065477.1 139741 139814 + 74 252 ST4078_00830 CP065477.1 139943 141490 + 1548 1615 ST4078_00835 CP065477.1 141545 141617 + 73 43 ST4078_00840 CP065477.1 141764 144663 + 2900 11252 ST4078_00845 CP065477.1 144747 144862 + 116 148 ST4078_00850 CP065477.1 144868 144941 + 74 57 ST4078_00855 CP065477.1 145695 147662 + 1968 6509 ST4078_00860 CP065477.1 147700 148611 - 912 224 ST4078_00865 CP065477.1 148814 149035 + 222 6770 ST4078_00880 CP065477.1 150039 151229 + 1191 3920 ST4078_00895 CP065477.1 152707 153204 + 498 192 ST4078_00900 CP065477.1 153304 154146 - 843 1342 ST4078_00905 CP065477.1 154287 155570 + 1284 89758 ST4078_00910 CP065477.1 155728 156303 + 576 27936 ST4078_00915 CP065477.1 156554 158158 + 1605 3690 ST4078_00920 CP065477.1 158253 158723 + 471 905 ST4078_00925 CP065477.1 158739 159185 + 447 765 ST4078_00930 CP065477.1 159185 160138 + 954 1113 ST4078_00935 CP065477.1 160139 160882 + 744 720 ST4078_00940 CP065477.1 161136 161558 + 423 100 ST4078_00945 CP065477.1 161596 161763 + 168 36 ST4078_00960 CP065477.1 163635 164093 - 459 3840 ST4078_00965 CP065477.1 164262 166481 + 2220 4227 ST4078_00970 CP065477.1 166494 166937 + 444 1078 ST4078_00975 CP065477.1 167378 167662 + 285 101 ST4078_00980 CP065477.1 167592 168089 + 498 89 ST4078_00985 CP065477.1 168144 168914 + 771 279 ST4078_00990 CP065477.1 169215 170465 + 1251 1098 ST4078_00995 CP065477.1 170626 171240 - 615 8987 ST4078_01000 CP065477.1 171341 171979 - 639 293 ST4078_01005 CP065477.1 172086 173249 + 1164 624 ST4078_01010 CP065477.1 173398 173667 + 270 54363 ST4078_01015 CP065477.1 173897 174478 - 582 1121 ST4078_01020 CP065477.1 175047 175217 + 171 2011 ST4078_01025 CP065477.1 175304 175411 + 108 1893 ST4078_01030 CP065477.1 175498 176238 - 741 2944 ST4078_01035 CP065477.1 176238 177788 - 1551 2741 ST4078_01040 CP065477.1 177991 178845 + 855 1150 ST4078_01045 CP065477.1 179495 180244 + 750 2943 ST4078_01050 CP065477.1 180248 181405 + 1158 3167 ST4078_01055 CP065477.1 181565 182335 + 771 2984 ST4078_01060 CP065477.1 182372 183634 + 1263 5826 ST4078_01065 CP065477.1 183688 184920 + 1233 3842 ST4078_01070 CP065477.1 184907 185341 + 435 890 ST4078_01075 CP065477.1 185421 186839 + 1419 8212 ST4078_01105 CP065477.1 191510 191872 + 363 268 ST4078_01110 CP065477.1 191953 192819 + 867 1812 ST4078_01115 CP065477.1 192812 193789 + 978 1903 ST4078_01120 CP065477.1 194018 195286 + 1269 3093 ST4078_01125 CP065477.1 195392 195835 + 444 496 ST4078_01130 CP065477.1 195837 196544 + 708 726 ST4078_01135 CP065477.1 196537 197349 + 813 1332 ST4078_01140 CP065477.1 197511 198449 + 939 571 ST4078_01150 CP065477.1 200887 201699 + 813 364 ST4078_01155 CP065477.1 201808 203157 + 1350 27085 ST4078_01160 CP065477.1 203345 204061 + 717 11042 ST4078_01165 CP065477.1 204187 204525 + 339 5294 ST4078_01170 CP065477.1 204654 205403 + 750 3464 ST4078_01175 CP065477.1 205416 206210 + 795 2134 ST4078_01180 CP065477.1 206227 207489 + 1263 3995 ST4078_01185 CP065477.1 207560 209422 + 1863 10125 ST4078_01190 CP065477.1 210039 211979 + 1941 1733 ST4078_01195 CP065477.1 211979 212782 + 804 1136 ST4078_01200 CP065477.1 212954 213241 + 288 19504 ST4078_01205 CP065477.1 213290 214909 + 1620 63798 ST4078_01215 CP065477.1 216323 216631 - 309 1791 ST4078_01220 CP065477.1 217141 217446 - 306 84 ST4078_01225 CP065477.1 217446 217778 - 333 148 ST4078_01230 CP065477.1 217958 218830 - 873 344 ST4078_01235 CP065477.1 218896 221223 + 2328 4124 ST4078_01240 CP065477.1 221272 221424 + 153 2102 ST4078_01245 CP065477.1 221433 221609 + 177 3982 ST4078_01250 CP065477.1 221806 222345 + 540 5706 ST4078_01255 CP065477.1 222467 222955 + 489 621 ST4078_01265 CP065477.1 223892 224656 - 765 309 ST4078_01270 CP065477.1 224830 227331 + 2502 6121 ST4078_01275 CP065477.1 227628 227984 + 357 74 ST4078_01285 CP065477.1 229556 231010 + 1455 1314 ST4078_01290 CP065477.1 231022 231843 + 822 914 ST4078_01295 CP065477.1 231859 232299 + 441 1045 ST4078_01300 CP065477.1 232401 233738 + 1338 7407 ST4078_01305 CP065477.1 233940 235196 + 1257 124 ST4078_01310 CP065477.1 235272 237614 - 2343 13512 ST4078_01315 CP065477.1 237614 238210 - 597 5400 ST4078_01320 CP065477.1 238287 238802 + 516 285 ST4078_01325 CP065477.1 238911 239243 + 333 3828 ST4078_01330 CP065477.1 239259 239630 + 372 207206 ST4078_01335 CP065477.1 239780 240946 + 1167 3865 ST4078_01340 CP065477.1 240949 242811 + 1863 18835 ST4078_01345 CP065477.1 242922 246017 + 3096 5564 ST4078_01350 CP065477.1 246173 246889 + 717 6173 ST4078_01355 CP065477.1 246916 248244 + 1329 8618 ST4078_01360 CP065477.1 248330 248797 + 468 498 ST4078_01365 CP065477.1 248897 250873 + 1977 14072 ST4078_01370 CP065477.1 250958 251440 + 483 10330 ST4078_01380 CP065477.1 252390 253307 - 918 4089 ST4078_01385 CP065477.1 253394 253672 - 279 49 ST4078_01390 CP065477.1 253775 254512 + 738 3443 ST4078_01395 CP065477.1 254614 255108 + 495 2972 ST4078_01400 CP065477.1 255142 255831 + 690 3807 ST4078_01410 CP065477.1 257138 258391 + 1254 1814 ST4078_01415 CP065477.1 258420 258959 - 540 163 ST4078_01420 CP065477.1 259200 259445 + 246 4269 ST4078_01425 CP065477.1 259511 260326 + 816 1734 ST4078_01430 CP065477.1 260319 261293 + 975 1261 ST4078_01435 CP065477.1 261275 261796 + 522 687 ST4078_01440 CP065477.1 261793 262275 + 483 643 ST4078_01445 CP065477.1 262229 262990 + 762 997 ST4078_01450 CP065477.1 262990 263703 + 714 892 ST4078_01455 CP065477.1 263696 264277 + 582 908 ST4078_01460 CP065477.1 264370 265095 + 726 892 ST4078_01465 CP065477.1 265092 265343 + 252 318 ST4078_01470 CP065477.1 265366 266805 - 1440 2332 ST4078_01475 CP065477.1 266812 268161 - 1350 1833 ST4078_01480 CP065477.1 268450 268959 + 510 6748 ST4078_01485 CP065477.1 269271 269828 + 558 1226 ST4078_01490 CP065477.1 269831 270481 + 651 1839 ST4078_01495 CP065477.1 270676 271575 + 900 2083 ST4078_01500 CP065477.1 271750 271974 + 225 82 ST4078_01510 CP065477.1 272700 272939 + 240 94 ST4078_01520 CP065477.1 273425 273844 + 420 94 ST4078_01525 CP065477.1 273952 274269 + 318 699 ST4078_01535 CP065477.1 276057 276572 + 516 972 ST4078_01540 CP065477.1 276597 276899 + 303 617 ST4078_01545 CP065477.1 276911 277222 + 312 807 ST4078_01550 CP065477.1 277238 278956 + 1719 5095 ST4078_01555 CP065477.1 279097 279549 + 453 850 ST4078_01560 CP065477.1 279539 280252 + 714 1770 ST4078_01565 CP065477.1 280282 280896 + 615 1354 ST4078_01570 CP065477.1 280898 281737 + 840 2096 ST4078_01575 CP065477.1 281741 282718 + 978 2022 ST4078_01580 CP065477.1 282715 283494 + 780 1462 ST4078_01585 CP065477.1 283496 284209 + 714 2723 ST4078_01590 CP065477.1 284374 285222 + 849 5204 ST4078_01595 CP065477.1 285412 288303 + 2892 12448 ST4078_01600 CP065477.1 288300 289946 + 1647 8058 ST4078_01605 CP065477.1 289972 291180 + 1209 3665 ST4078_01615 CP065477.1 291887 292735 + 849 7997 ST4078_01620 CP065477.1 292895 293797 + 903 9943 ST4078_01625 CP065477.1 293859 294341 + 483 2538 ST4078_01630 CP065477.1 294399 294764 + 366 3127 ST4078_01640 CP065477.1 294861 295232 + 372 2238 ST4078_01645 CP065477.1 295225 296292 + 1068 6187 ST4078_01650 CP065477.1 296292 296984 + 693 4564 ST4078_01655 CP065477.1 297107 298315 + 1209 2052 ST4078_01660 CP065477.1 298468 299316 + 849 1202 ST4078_01665 CP065477.1 299326 299871 + 546 516 ST4078_01670 CP065477.1 299937 301613 + 1677 2161 ST4078_01675 CP065477.1 301606 302436 + 831 622 ST4078_01680 CP065477.1 302646 304622 + 1977 9690 ST4078_01685 CP065477.1 304871 305542 - 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