# Program:featureCounts v2.0.4; Command:"featureCounts" "-s" "2" "-M" "-t" "gene" "-g" "locus_tag" "-a" "/scratch/p127804/PROJECTS/Douwe/genomes/Bifidobacterium_bifidum_CNCM_I_4319.gff" "-o" "/scratch/p127804/PROJECTS/Douwe/Douwe_202509_025/results_CNCM_I_4319/DS025_05.2.counts" "/scratch/p127804/PROJECTS/Douwe/Douwe_202509_025/results/DS025_05.sorted.bam" Geneid Chr Start End Strand Length /scratch/p127804/PROJECTS/Douwe/Douwe_202509_025/results/DS025_05.sorted.bam CNCMI4319_0001 CP058603.1 1 1590 + 1590 2219 CNCMI4319_0002 CP058603.1 2191 3315 + 1125 735 CNCMI4319_0003 CP058603.1 3454 4716 + 1263 1387 CNCMI4319_0004 CP058603.1 4713 5285 + 573 208 CNCMI4319_0005 CP058603.1 5435 7597 + 2163 6137 CNCMI4319_0006 CP058603.1 7731 10463 + 2733 12053 CNCMI4319_0007 CP058603.1 10523 11080 + 558 8153 CNCMI4319_0008 CP058603.1 11445 11699 - 255 5 CNCMI4319_0009 CP058603.1 11725 12261 + 537 11 CNCMI4319_0010 CP058603.1 12678 13592 - 915 1291 CNCMI4319_0011 CP058603.1 13854 15059 - 1206 156 CNCMI4319_0012 CP058603.1 15351 16502 + 1152 428 CNCMI4319_0013 CP058603.1 16551 16709 - 159 26 CNCMI4319_0014 CP058603.1 16955 17209 - 255 896 CNCMI4319_0015 CP058603.1 17222 17482 - 261 1032 CNCMI4319_0016 CP058603.1 17585 17800 - 216 233 CNCMI4319_0017 CP058603.1 17811 18164 - 354 396 CNCMI4319_0018 CP058603.1 18418 18927 + 510 1 CNCMI4319_0019 CP058603.1 19444 20790 - 1347 1620 CNCMI4319_0020 CP058603.1 21336 21617 + 282 14 CNCMI4319_0021 CP058603.1 21749 22183 + 435 279 CNCMI4319_0022 CP058603.1 22558 26073 - 3516 4055 CNCMI4319_tRNA01 CP058603.1 26335 26407 - 73 5 CNCMI4319_tRNA02 CP058603.1 26478 26551 - 74 6 CNCMI4319_0023 CP058603.1 26862 29198 + 2337 4635 CNCMI4319_0024 CP058603.1 29671 30723 - 1053 429 CNCMI4319_0025 CP058603.1 31053 31502 + 450 417 CNCMI4319_0026 CP058603.1 31626 31898 + 273 718 CNCMI4319_0027 CP058603.1 31964 33481 + 1518 3413 CNCMI4319_0028 CP058603.1 33767 34507 + 741 477 CNCMI4319_0029 CP058603.1 34695 35174 - 480 2360 CNCMI4319_0030 CP058603.1 35617 36690 + 1074 766 CNCMI4319_0031 CP058603.1 36726 38048 - 1323 1267 CNCMI4319_0032 CP058603.1 38257 39288 - 1032 42 CNCMI4319_0033 CP058603.1 39432 40115 - 684 805 CNCMI4319_0034 CP058603.1 40398 40961 + 564 2562 CNCMI4319_0035 CP058603.1 41303 43216 + 1914 1455 CNCMI4319_0036 CP058603.1 43325 44971 + 1647 740 CNCMI4319_0037 CP058603.1 45260 46546 - 1287 589 CNCMI4319_0038 CP058603.1 47043 49799 - 2757 28677 CNCMI4319_0039 CP058603.1 50231 52213 + 1983 3530 CNCMI4319_0040 CP058603.1 52286 53377 - 1092 169 CNCMI4319_0041 CP058603.1 53954 54973 + 1020 32 CNCMI4319_0042 CP058603.1 55448 56545 - 1098 395 CNCMI4319_0043 CP058603.1 56686 57066 + 381 2348 CNCMI4319_0044 CP058603.1 57314 57826 + 513 359 CNCMI4319_0045 CP058603.1 57909 58514 + 606 59 CNCMI4319_0046 CP058603.1 58702 59727 + 1026 999 CNCMI4319_0047 CP058603.1 59739 59954 - 216 0 CNCMI4319_0048 CP058603.1 60070 62661 + 2592 3772 CNCMI4319_0049 CP058603.1 62734 63684 - 951 2341 CNCMI4319_0050 CP058603.1 64052 66241 + 2190 4845 CNCMI4319_0051 CP058603.1 66349 67371 + 1023 6051 CNCMI4319_0052 CP058603.1 67379 69055 + 1677 5067 CNCMI4319_0053 CP058603.1 69169 70617 + 1449 8329 CNCMI4319_0054 CP058603.1 70823 71089 - 267 3 CNCMI4319_0055 CP058603.1 71250 71651 - 402 0 CNCMI4319_0056 CP058603.1 72212 72991 - 780 9 CNCMI4319_0057 CP058603.1 72988 74487 - 1500 20 CNCMI4319_0058 CP058603.1 74731 75633 + 903 117 CNCMI4319_0059 CP058603.1 75624 76271 + 648 66 CNCMI4319_0060 CP058603.1 76234 77061 - 828 12 CNCMI4319_0061 CP058603.1 77397 78290 + 894 3524 CNCMI4319_0062 CP058603.1 78381 79145 + 765 1604 CNCMI4319_0063 CP058603.1 79145 80359 + 1215 2817 CNCMI4319_0064 CP058603.1 80534 82048 + 1515 1398 CNCMI4319_0065 CP058603.1 82079 84067 + 1989 4841 CNCMI4319_0066 CP058603.1 84144 85175 - 1032 1458 CNCMI4319_0067 CP058603.1 85344 86009 + 666 82 CNCMI4319_0068 CP058603.1 86052 86831 - 780 8 CNCMI4319_0069 CP058603.1 86828 88327 - 1500 21 CNCMI4319_0070 CP058603.1 88584 88964 + 381 0 CNCMI4319_0071 CP058603.1 89051 90418 - 1368 533 CNCMI4319_0072 CP058603.1 91081 91446 - 366 288 CNCMI4319_0074 CP058603.1 92051 94102 + 2052 324 CNCMI4319_0075 CP058603.1 94526 94780 - 255 1 CNCMI4319_0076 CP058603.1 94849 95139 + 291 5 CNCMI4319_0077 CP058603.1 95586 95849 - 264 66 CNCMI4319_0078 CP058603.1 95868 96035 + 168 0 CNCMI4319_0079 CP058603.1 96137 96544 - 408 457 CNCMI4319_0080 CP058603.1 96881 99334 + 2454 635 CNCMI4319_0081 CP058603.1 100140 100361 - 222 2159 CNCMI4319_0082 CP058603.1 100548 101333 + 786 515 CNCMI4319_0083 CP058603.1 101330 102067 + 738 151 CNCMI4319_0084 CP058603.1 102288 103616 + 1329 295 CNCMI4319_0085 CP058603.1 103742 104182 - 441 5838 CNCMI4319_0086 CP058603.1 104260 105048 + 789 1347 CNCMI4319_0087 CP058603.1 105045 106274 + 1230 2750 CNCMI4319_0088 CP058603.1 106370 107014 + 645 1607 CNCMI4319_0089 CP058603.1 107247 109304 - 2058 9411 CNCMI4319_0090 CP058603.1 109307 110290 - 984 2123 CNCMI4319_0091 CP058603.1 110287 111753 - 1467 1254 CNCMI4319_0092 CP058603.1 111750 113228 - 1479 1966 CNCMI4319_0093 CP058603.1 113225 114883 - 1659 1324 CNCMI4319_0094 CP058603.1 114890 115432 - 543 498 CNCMI4319_0095 CP058603.1 115460 116161 - 702 2367 CNCMI4319_0096 CP058603.1 116411 118933 + 2523 4454 CNCMI4319_0097 CP058603.1 119197 121983 + 2787 2821 CNCMI4319_0098 CP058603.1 121980 124307 + 2328 1839 CNCMI4319_0099 CP058603.1 124461 125516 + 1056 612 CNCMI4319_0100 CP058603.1 125552 126514 + 963 250 CNCMI4319_0101 CP058603.1 126779 127534 + 756 244 CNCMI4319_0102 CP058603.1 127733 128113 + 381 491 CNCMI4319_0103 CP058603.1 128215 129219 + 1005 2031 CNCMI4319_0104 CP058603.1 129224 129724 - 501 11 CNCMI4319_0105 CP058603.1 130074 133259 - 3186 627 CNCMI4319_0106 CP058603.1 133256 133762 - 507 153 CNCMI4319_0107 CP058603.1 133922 134332 - 411 104 CNCMI4319_0108 CP058603.1 134768 135100 + 333 301 CNCMI4319_0109 CP058603.1 135222 136040 + 819 730 CNCMI4319_0110 CP058603.1 136058 136534 + 477 337 CNCMI4319_tRNA03 CP058603.1 136942 137024 - 83 118 CNCMI4319_0111 CP058603.1 137169 138470 - 1302 1494 CNCMI4319_0112 CP058603.1 138839 140761 + 1923 11403 CNCMI4319_0113 CP058603.1 141139 143340 + 2202 3197 CNCMI4319_0114 CP058603.1 143505 144920 + 1416 6056 CNCMI4319_0115 CP058603.1 145092 146030 + 939 342 CNCMI4319_tRNA04 CP058603.1 146098 146171 + 74 25 CNCMI4319_0116 CP058603.1 146287 147582 - 1296 1698 CNCMI4319_0117 CP058603.1 147721 148788 + 1068 1711 CNCMI4319_0118 CP058603.1 148923 150329 + 1407 1449 CNCMI4319_0119 CP058603.1 150329 151195 + 867 991 CNCMI4319_0120 CP058603.1 151249 152535 + 1287 3945 CNCMI4319_0121 CP058603.1 152610 153554 + 945 923 CNCMI4319_0122 CP058603.1 153556 153924 + 369 366 CNCMI4319_0123 CP058603.1 154082 155128 + 1047 629 CNCMI4319_0124 CP058603.1 155211 155642 + 432 42 CNCMI4319_0125 CP058603.1 155693 157378 + 1686 7980 CNCMI4319_0126 CP058603.1 157970 159340 + 1371 80 CNCMI4319_0127 CP058603.1 159586 160638 + 1053 2458 CNCMI4319_0128 CP058603.1 161057 162109 + 1053 8363 CNCMI4319_0129 CP058603.1 162546 163535 - 990 211 CNCMI4319_0130 CP058603.1 163581 163877 - 297 42 CNCMI4319_0131 CP058603.1 163908 167783 - 3876 2906 CNCMI4319_0132 CP058603.1 168080 169576 - 1497 1613 CNCMI4319_0133 CP058603.1 170317 170886 - 570 29 CNCMI4319_0134 CP058603.1 171024 171725 + 702 66 CNCMI4319_0135 CP058603.1 171734 175153 + 3420 171 CNCMI4319_0136 CP058603.1 175170 175649 - 480 241 CNCMI4319_0137 CP058603.1 175881 176522 - 642 130 CNCMI4319_0138 CP058603.1 176688 176942 + 255 15 CNCMI4319_0139 CP058603.1 177017 177574 - 558 288 CNCMI4319_0140 CP058603.1 177602 178552 + 951 190 CNCMI4319_0141 CP058603.1 178702 178950 + 249 1474 CNCMI4319_0142 CP058603.1 179496 180476 + 981 1009 CNCMI4319_0143 CP058603.1 180719 182158 + 1440 35 CNCMI4319_0144 CP058603.1 182399 183214 + 816 11 CNCMI4319_0145 CP058603.1 183169 183360 + 192 23 CNCMI4319_0146 CP058603.1 183478 184923 + 1446 95 CNCMI4319_0147 CP058603.1 185271 186833 + 1563 826 CNCMI4319_0148 CP058603.1 186850 187806 + 957 291 CNCMI4319_0149 CP058603.1 187793 189004 + 1212 424 CNCMI4319_0150 CP058603.1 189118 190071 + 954 458 CNCMI4319_0151 CP058603.1 190163 193207 + 3045 569 CNCMI4319_0152 CP058603.1 193695 194039 + 345 12 CNCMI4319_0153 CP058603.1 194039 195931 + 1893 27 CNCMI4319_0154 CP058603.1 196065 196634 + 570 6 CNCMI4319_0155 CP058603.1 196904 197341 + 438 154 CNCMI4319_0156 CP058603.1 197406 198002 - 597 357 CNCMI4319_0157 CP058603.1 198181 199689 - 1509 582 CNCMI4319_tRNA05 CP058603.1 199901 199988 - 88 19 CNCMI4319_0158 CP058603.1 200141 200284 - 144 0 CNCMI4319_0159 CP058603.1 200300 201130 + 831 3 CNCMI4319_0160 CP058603.1 201366 202358 + 993 393 CNCMI4319_0161 CP058603.1 203237 203767 + 531 1837 CNCMI4319_0162 CP058603.1 203986 205869 + 1884 1762 CNCMI4319_0163 CP058603.1 205899 207860 + 1962 3027 CNCMI4319_0164 CP058603.1 208693 214572 + 5880 30112 CNCMI4319_0165 CP058603.1 214748 215299 + 552 604 CNCMI4319_0166 CP058603.1 215424 217037 + 1614 3368 CNCMI4319_0167 CP058603.1 217037 218647 + 1611 5674 CNCMI4319_0168 CP058603.1 219043 219390 - 348 150 CNCMI4319_0169 CP058603.1 219551 220084 + 534 2453 CNCMI4319_0170 CP058603.1 220175 221605 - 1431 284 CNCMI4319_0171 CP058603.1 222015 222674 + 660 505 CNCMI4319_0172 CP058603.1 222935 223861 + 927 785 CNCMI4319_0173 CP058603.1 224138 224923 - 786 355 CNCMI4319_0174 CP058603.1 225158 226225 - 1068 6497 CNCMI4319_0175 CP058603.1 226656 227315 + 660 204 CNCMI4319_0177 CP058603.1 228768 230297 + 1530 3527 CNCMI4319_0178 CP058603.1 230539 231063 - 525 181 CNCMI4319_0179 CP058603.1 231035 231319 - 285 421 CNCMI4319_0180 CP058603.1 232073 232255 - 183 1758 CNCMI4319_tRNA06 CP058603.1 233344 233419 + 76 24 CNCMI4319_tRNA07 CP058603.1 233460 233534 + 75 84 CNCMI4319_0181 CP058603.1 233814 235103 + 1290 1018 CNCMI4319_0182 CP058603.1 235246 236100 - 855 5135 CNCMI4319_0183 CP058603.1 236375 237778 + 1404 651 CNCMI4319_0184 CP058603.1 237925 238617 + 693 235 CNCMI4319_0185 CP058603.1 238776 242795 + 4020 3035 CNCMI4319_0186 CP058603.1 242870 243250 + 381 1959 CNCMI4319_0187 CP058603.1 244142 245248 + 1107 415 CNCMI4319_0188 CP058603.1 245375 246526 + 1152 1652 CNCMI4319_0189 CP058603.1 246805 248130 + 1326 8435 CNCMI4319_0190 CP058603.1 248227 249570 - 1344 32 CNCMI4319_0191 CP058603.1 249793 250503 - 711 56 CNCMI4319_0192 CP058603.1 250702 251625 + 924 8798 CNCMI4319_0193 CP058603.1 251950 252381 + 432 21732 CNCMI4319_0194 CP058603.1 252396 253088 + 693 30172 CNCMI4319_0195 CP058603.1 253342 254331 - 990 3149 CNCMI4319_0196 CP058603.1 254422 255495 + 1074 3956 CNCMI4319_0197 CP058603.1 255488 256501 + 1014 3361 CNCMI4319_0198 CP058603.1 256738 257724 + 987 3813 CNCMI4319_0199 CP058603.1 257823 258449 - 627 330 CNCMI4319_tRNA08 CP058603.1 258572 258647 + 76 10 CNCMI4319_0200 CP058603.1 258684 258842 + 159 10 CNCMI4319_0201 CP058603.1 258948 259964 - 1017 928 CNCMI4319_0202 CP058603.1 260157 260297 + 141 3 CNCMI4319_0203 CP058603.1 260685 260981 + 297 12 CNCMI4319_0204 CP058603.1 260988 261851 + 864 28 CNCMI4319_0205 CP058603.1 261803 262240 + 438 16 CNCMI4319_0206 CP058603.1 262488 264740 + 2253 14537 CNCMI4319_0207 CP058603.1 264965 265354 + 390 1063 CNCMI4319_0208 CP058603.1 265979 266947 + 969 1281 CNCMI4319_0209 CP058603.1 267017 268813 + 1797 5893 CNCMI4319_0210 CP058603.1 268979 270607 + 1629 2417 CNCMI4319_0211 CP058603.1 270724 271230 - 507 5102 CNCMI4319_0212 CP058603.1 271227 272777 - 1551 12757 CNCMI4319_0213 CP058603.1 273253 274566 + 1314 5582 CNCMI4319_0214 CP058603.1 274714 275712 + 999 1837 CNCMI4319_0215 CP058603.1 275825 277261 + 1437 2288 CNCMI4319_0216 CP058603.1 277265 277645 - 381 221 CNCMI4319_0217 CP058603.1 277645 278007 - 363 212 CNCMI4319_0218 CP058603.1 278362 279441 + 1080 516 CNCMI4319_0219 CP058603.1 279386 280711 + 1326 660 CNCMI4319_0220 CP058603.1 280786 281730 - 945 345 CNCMI4319_0221 CP058603.1 281953 283203 + 1251 1514 CNCMI4319_0222 CP058603.1 283683 286565 + 2883 11060 CNCMI4319_0223 CP058603.1 286732 287040 + 309 17223 CNCMI4319_0224 CP058603.1 287065 287316 + 252 20303 CNCMI4319_0225 CP058603.1 287767 288870 - 1104 115 CNCMI4319_0226 CP058603.1 289249 290934 + 1686 5669 CNCMI4319_0227 CP058603.1 291127 292257 + 1131 2099 CNCMI4319_0228 CP058603.1 292345 293550 + 1206 2537 CNCMI4319_tRNA09 CP058603.1 293731 293806 + 76 303 CNCMI4319_0229 CP058603.1 293839 294066 + 228 4985 CNCMI4319_0230 CP058603.1 294096 294938 + 843 17278 CNCMI4319_0231 CP058603.1 295043 295927 + 885 2076 CNCMI4319_0232 CP058603.1 296048 297043 + 996 2595 CNCMI4319_0233 CP058603.1 297280 298425 + 1146 3771 CNCMI4319_0234 CP058603.1 298455 299486 + 1032 3252 CNCMI4319_0235 CP058603.1 299994 305789 + 5796 70605 CNCMI4319_0236 CP058603.1 305924 306937 - 1014 3126 CNCMI4319_0237 CP058603.1 307128 310307 - 3180 4199 CNCMI4319_0238 CP058603.1 310488 310805 - 318 24 CNCMI4319_0239 CP058603.1 310811 311215 - 405 36 CNCMI4319_0240 CP058603.1 311381 312664 + 1284 937 CNCMI4319_0241 CP058603.1 312811 313107 + 297 18529 CNCMI4319_0242 CP058603.1 313165 313848 + 684 31020 CNCMI4319_0243 CP058603.1 313934 314182 + 249 15187 CNCMI4319_0244 CP058603.1 314200 314646 + 447 24633 CNCMI4319_0245 CP058603.1 314841 315965 + 1125 35 CNCMI4319_0246 CP058603.1 315962 316486 + 525 21 CNCMI4319_tRNA10 CP058603.1 316961 317037 - 77 32 CNCMI4319_0247 CP058603.1 317368 318099 + 732 7408 CNCMI4319_0248 CP058603.1 318300 319118 + 819 1576 CNCMI4319_0249 CP058603.1 319334 320296 + 963 275 CNCMI4319_0250 CP058603.1 320473 321297 + 825 784 CNCMI4319_0251 CP058603.1 321438 321818 + 381 394 CNCMI4319_0252 CP058603.1 322480 326010 + 3531 260 CNCMI4319_0253 CP058603.1 326172 327773 + 1602 379 CNCMI4319_0254 CP058603.1 327954 329132 + 1179 12 CNCMI4319_0255 CP058603.1 329409 330788 + 1380 8426 CNCMI4319_0256 CP058603.1 330903 331718 + 816 1534 CNCMI4319_0258 CP058603.1 332549 335212 + 2664 4905 CNCMI4319_0259 CP058603.1 335507 336280 - 774 667 CNCMI4319_0260 CP058603.1 336343 336993 - 651 283 CNCMI4319_0261 CP058603.1 337156 338430 - 1275 165 CNCMI4319_0262 CP058603.1 338538 339728 + 1191 1850 CNCMI4319_0263 CP058603.1 339951 341183 + 1233 1271 CNCMI4319_0264 CP058603.1 341250 342257 + 1008 1383 CNCMI4319_0265 CP058603.1 343131 343406 - 276 82 CNCMI4319_0266 CP058603.1 343598 345409 - 1812 1340 CNCMI4319_0267 CP058603.1 345715 345864 + 150 19 CNCMI4319_0268 CP058603.1 345861 346091 + 231 9 CNCMI4319_tRNA11 CP058603.1 346187 346259 + 73 18 CNCMI4319_tRNA12 CP058603.1 346308 346379 + 72 6 CNCMI4319_tRNA13 CP058603.1 346410 346482 + 73 5 CNCMI4319_tRNA14 CP058603.1 346507 346579 + 73 15 CNCMI4319_0269 CP058603.1 346676 347395 + 720 50 CNCMI4319_0270 CP058603.1 347947 349194 + 1248 636 CNCMI4319_0271 CP058603.1 350043 350366 + 324 372 CNCMI4319_0273 CP058603.1 350922 351665 + 744 168 CNCMI4319_0274 CP058603.1 351846 353168 - 1323 428 CNCMI4319_0275 CP058603.1 353400 354191 + 792 8 CNCMI4319_0276 CP058603.1 354131 355189 - 1059 1259 CNCMI4319_0277 CP058603.1 355449 355643 + 195 11053 CNCMI4319_0278 CP058603.1 355763 358447 + 2685 2219 CNCMI4319_0279 CP058603.1 358628 359935 + 1308 90 CNCMI4319_0280 CP058603.1 359985 360158 + 174 18 CNCMI4319_0281 CP058603.1 360396 361484 + 1089 17 CNCMI4319_0282 CP058603.1 361548 363458 + 1911 24 CNCMI4319_0283 CP058603.1 363467 365104 + 1638 35 CNCMI4319_0284 CP058603.1 365374 366078 + 705 349 CNCMI4319_0285 CP058603.1 366294 366896 + 603 412 CNCMI4319_0286 CP058603.1 367047 367499 - 453 720 CNCMI4319_0287 CP058603.1 367746 368744 - 999 1142 CNCMI4319_0288 CP058603.1 369006 369620 - 615 2453 CNCMI4319_0289 CP058603.1 369617 369850 - 234 2068 CNCMI4319_0290 CP058603.1 369853 370302 - 450 20500 CNCMI4319_0291 CP058603.1 370879 372408 - 1530 1314 CNCMI4319_0292 CP058603.1 372611 373303 + 693 2471 CNCMI4319_0293 CP058603.1 373574 374746 - 1173 1310 CNCMI4319_0294 CP058603.1 374922 376568 - 1647 9485 CNCMI4319_0295 CP058603.1 376931 377839 + 909 949 CNCMI4319_0296 CP058603.1 378061 379683 - 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