The standard Kraken2 database from https://benlangmead.github.io/aws-indexes/k2 can be found in /scratch/public/genomes/kraken2db. You can use this database by executing: export KRAKEN2_DEFAULT_DB=/scratch/public/genomes/kraken2db Loading database information... done. 9308811 sequences (1117.06 Mbp) processed in 14.969s (37312.5 Kseq/m, 4477.50 Mbp/m). 8295366 sequences classified (89.11%) 1013445 sequences unclassified (10.89%) Loading database information... done. 9612983 sequences (1153.56 Mbp) processed in 15.491s (37234.2 Kseq/m, 4468.11 Mbp/m). 8528451 sequences classified (88.72%) 1084532 sequences unclassified (11.28%) Loading database information... done. 8121479 sequences (974.58 Mbp) processed in 13.256s (36759.1 Kseq/m, 4411.09 Mbp/m). 7355272 sequences classified (90.57%) 766207 sequences unclassified (9.43%) Loading database information... done. 9386711 sequences (1126.41 Mbp) processed in 15.251s (36930.0 Kseq/m, 4431.60 Mbp/m). 8532773 sequences classified (90.90%) 853938 sequences unclassified (9.10%) Loading database information... done. 8095571 sequences (971.47 Mbp) processed in 13.233s (36705.9 Kseq/m, 4404.71 Mbp/m). 7270207 sequences classified (89.80%) 825364 sequences unclassified (10.20%) Loading database information... done. 7727741 sequences (927.33 Mbp) processed in 12.604s (36786.7 Kseq/m, 4414.41 Mbp/m). 7057993 sequences classified (91.33%) 669748 sequences unclassified (8.67%) Loading database information... done. 8437201 sequences (1012.46 Mbp) processed in 13.653s (37078.5 Kseq/m, 4449.42 Mbp/m). 7569435 sequences classified (89.72%) 867766 sequences unclassified (10.28%) Loading database information... done. 10444933 sequences (1253.39 Mbp) processed in 16.597s (37760.5 Kseq/m, 4531.26 Mbp/m). 9335056 sequences classified (89.37%) 1109877 sequences unclassified (10.63%) Loading database information... done. 7331787 sequences (879.81 Mbp) processed in 11.672s (37690.4 Kseq/m, 4522.85 Mbp/m). 7216949 sequences classified (98.43%) 114838 sequences unclassified (1.57%) Loading database information... done. 7615412 sequences (913.85 Mbp) processed in 12.197s (37462.6 Kseq/m, 4495.52 Mbp/m). 7464188 sequences classified (98.01%) 151224 sequences unclassified (1.99%) Loading database information... done. 7019615 sequences (842.35 Mbp) processed in 11.566s (36413.7 Kseq/m, 4369.64 Mbp/m). 5826651 sequences classified (83.01%) 1192964 sequences unclassified (16.99%) Loading database information... done. 7413927 sequences (889.67 Mbp) processed in 12.037s (36954.7 Kseq/m, 4434.57 Mbp/m). 6928657 sequences classified (93.45%) 485270 sequences unclassified (6.55%) Loading database information... done. 9567244 sequences (1148.07 Mbp) processed in 15.378s (37328.3 Kseq/m, 4479.40 Mbp/m). 8577603 sequences classified (89.66%) 989641 sequences unclassified (10.34%) Loading database information... done. 9468236 sequences (1136.19 Mbp) processed in 15.271s (37201.7 Kseq/m, 4464.20 Mbp/m). 8432260 sequences classified (89.06%) 1035976 sequences unclassified (10.94%) Loading database information... done. 8049084 sequences (965.89 Mbp) processed in 13.139s (36756.4 Kseq/m, 4410.76 Mbp/m). 7240154 sequences classified (89.95%) 808930 sequences unclassified (10.05%) Loading database information... done. 8179650 sequences (981.56 Mbp) processed in 13.223s (37116.7 Kseq/m, 4454.01 Mbp/m). 7236606 sequences classified (88.47%) 943044 sequences unclassified (11.53%) Loading database information... done. 7444591 sequences (893.35 Mbp) processed in 12.121s (36851.3 Kseq/m, 4422.15 Mbp/m). 6780545 sequences classified (91.08%) 664046 sequences unclassified (8.92%) Loading database information... done. 7902311 sequences (948.28 Mbp) processed in 12.689s (37364.7 Kseq/m, 4483.77 Mbp/m). 7136605 sequences classified (90.31%) 765706 sequences unclassified (9.69%) Loading database information... done. 10347463 sequences (1241.70 Mbp) processed in 16.491s (37648.0 Kseq/m, 4517.76 Mbp/m). 8730106 sequences classified (84.37%) 1617357 sequences unclassified (15.63%) Loading database information... done. 10027509 sequences (1203.30 Mbp) processed in 16.029s (37535.7 Kseq/m, 4504.29 Mbp/m). 8855689 sequences classified (88.31%) 1171820 sequences unclassified (11.69%) Loading database information... done. 5941560 sequences (712.99 Mbp) processed in 9.868s (36126.2 Kseq/m, 4335.15 Mbp/m). 5915858 sequences classified (99.57%) 25702 sequences unclassified (0.43%) Loading database information... done. 7184037 sequences (862.08 Mbp) processed in 12.021s (35856.5 Kseq/m, 4302.78 Mbp/m). 7141281 sequences classified (99.40%) 42756 sequences unclassified (0.60%) Loading database information... done. 7417694 sequences (890.12 Mbp) processed in 12.155s (36617.0 Kseq/m, 4394.04 Mbp/m). 6928036 sequences classified (93.40%) 489658 sequences unclassified (6.60%) Loading database information... done. 6836706 sequences (820.40 Mbp) processed in 11.349s (36144.0 Kseq/m, 4337.28 Mbp/m). 6366750 sequences classified (93.13%) 469956 sequences unclassified (6.87%) ############################################################################### Hábrók Cluster Job 13190986 for user p127804 Finished at: Mon Oct 7 08:48:22 CEST 2024 Job details: ============ Job ID : 13190986 Name : Kraken2 User : p127804 Partition : regularmedium Nodes : node20 Number of Nodes : 1 Cores : 16 Number of Tasks : 1 State : RUNNING Submit : 2024-10-07T08:35:29 Start : 2024-10-07T08:35:30 End : -- Reserved walltime : 12:00:00 Used walltime : 00:12:52 Used CPU time : -- % User (Computation) : -- % System (I/O) : -- Total memory reserved : 128G Maximum memory used : -- Acknowledgements: ================= Please see this page for information about acknowledging Hábrók in your publications: https://wiki.hpc.rug.nl/habrok/introduction/scientific_output ################################################################################