##fileformat=VCFv4.2
##FILTER=<ID=PASS,Description="All filters passed">
##ALT=<ID=NON_REF,Description="Represents any possible alternative allele at this location">
##FILTER=<ID=LOWBFSCORE,Description="Low score">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##ALT=<ID=DEL,Description="Deletion">
##ALT=<ID=DUP,Description="Duplication">
##INFO=<ID=SVTYPE,Number=1,Type=String,Description="Structure Variant Type">
##INFO=<ID=CN,Number=1,Type=String,Description="Copy number genotype">
##INFO=<ID=END,Number=1,Type=Integer,Description="Stop position of the interval">
##INFO=<ID=EXPECTED,Number=1,Type=Integer,Description="Total of reads expected">
##INFO=<ID=OBSERVED,Number=1,Type=Integer,Description="Total of reads observed">
##INFO=<ID=RATIO,Number=1,Type=Float,Description="Ratio between observed and expected read depth">
##INFO=<ID=BF,Number=1,Type=Float,Description="Bayes factor. The log10 of the likelihood ratio of data for the CNV call divided by the null (normal copy number).  The higher that number, the more confident once can be about the presence of a CNV">
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	ZHQ076-001
1	69091	CNVR1.1	N	<DEL>	6.95	LOWBFSCORE	CN=0;SVTYPE=DEL;END=70008;EXPECTED=31;OBSERVED=0;RATIO=0;BF=6.95	GT	1/1
1	12939365	CNVR72.3	N	<DUP>	6.11	LOWBFSCORE	CN=3;SVTYPE=DUP;END=12943215;EXPECTED=729;OBSERVED=961;RATIO=1.32;BF=6.11	GT	./.
1	13219000	.	N	<DUP>	8.77	PASS	CN=4;SVTYPE=DUP;END=13368733;EXPECTED=113;OBSERVED=202;RATIO=1.79;BF=8.77	GT	./.
1	16383672	CNVR92.1	N	<DEL>	5.29	LOWBFSCORE	CN=1;SVTYPE=DEL;END=16383803;EXPECTED=46;OBSERVED=14;RATIO=0.304;BF=5.29	GT	0/1
1	16385989	CNVR92.1	N	<DUP>	5.68	LOWBFSCORE	CN=3;SVTYPE=DUP;END=16388687;EXPECTED=331;OBSERVED=450;RATIO=1.36;BF=5.68	GT	./.
1	17256269	CNVR94.4	N	<DEL>	47.1	PASS	CN=1;SVTYPE=DEL;END=17275421;EXPECTED=3334;OBSERVED=2138;RATIO=0.641;BF=47.1	GT	0/1
1	21807423	CNVR107.2	N	<DEL>	5.97	LOWBFSCORE	CN=1;SVTYPE=DEL;END=21809879;EXPECTED=59;OBSERVED=23;RATIO=0.39;BF=5.97	GT	0/1
1	22336198	CNVR108.2	N	<DEL>	12.2	PASS	CN=1;SVTYPE=DEL;END=22338960;EXPECTED=157;OBSERVED=71;RATIO=0.452;BF=12.2	GT	0/1
1	46521467	.	N	<DUP>	4.6	LOWBFSCORE	CN=3;SVTYPE=DUP;END=46521643;EXPECTED=79;OBSERVED=134;RATIO=1.7;BF=4.6	GT	./.
1	47080643	.	N	<DEL>	9.96	PASS	CN=0;SVTYPE=DEL;END=47080748;EXPECTED=69;OBSERVED=13;RATIO=0.188;BF=9.96	GT	1/1
1	104297121	CNVR266.3	N	<DEL>	12	PASS	CN=0;SVTYPE=DEL;END=104297436;EXPECTED=94;OBSERVED=23;RATIO=0.245;BF=12	GT	1/1
1	108735032	CNVR293.1	N	<DEL>	5.43	LOWBFSCORE	CN=1;SVTYPE=DEL;END=108735327;EXPECTED=179;OBSERVED=100;RATIO=0.559;BF=5.43	GT	0/1
1	108993224	CNVR294.4	N	<DEL>	5.6	LOWBFSCORE	CN=1;SVTYPE=DEL;END=108996017;EXPECTED=74;OBSERVED=34;RATIO=0.459;BF=5.6	GT	0/1
1	109737043	.	N	<DEL>	5.55	LOWBFSCORE	CN=1;SVTYPE=DEL;END=109737216;EXPECTED=166;OBSERVED=91;RATIO=0.548;BF=5.55	GT	0/1
1	110230496	CNVR299.6	N	<DUP>	30.6	PASS	CN=4;SVTYPE=DUP;END=110235917;EXPECTED=323;OBSERVED=620;RATIO=1.92;BF=30.6	GT	./.
1	144220787	CNVR333.1	N	<DUP>	5.91	LOWBFSCORE	CN=4;SVTYPE=DUP;END=144220959;EXPECTED=62;OBSERVED=124;RATIO=2;BF=5.91	GT	./.
1	146401671	.	N	<DUP>	6.73	LOWBFSCORE	CN=3;SVTYPE=DUP;END=146408167;EXPECTED=101;OBSERVED=172;RATIO=1.7;BF=6.73	GT	./.
1	152770271	CNVR360.1	N	<DEL>	13.8	PASS	CN=0;SVTYPE=DEL;END=152770615;EXPECTED=66;OBSERVED=0;RATIO=0;BF=13.8	GT	1/1
1	154947222	.	N	<DUP>	4.92	LOWBFSCORE	CN=3;SVTYPE=DUP;END=154947280;EXPECTED=172;OBSERVED=263;RATIO=1.53;BF=4.92	GT	./.
1	161600158	CNVR383.1	N	<DUP>	14.2	PASS	CN=3;SVTYPE=DUP;END=161643863;EXPECTED=606;OBSERVED=877;RATIO=1.45;BF=14.2	GT	./.
1	184023410	.	N	<DEL>	5.71	LOWBFSCORE	CN=1;SVTYPE=DEL;END=184023589;EXPECTED=53;OBSERVED=17;RATIO=0.321;BF=5.71	GT	0/1
1	196794607	CNVR459.1	N	<DUP>	9.95	PASS	CN=3;SVTYPE=DUP;END=196801129;EXPECTED=312;OBSERVED=451;RATIO=1.45;BF=9.95	GT	./.
1	207737209	CNVR485.1	N	<DEL>	13.5	PASS	CN=1;SVTYPE=DEL;END=207741387;EXPECTED=441;OBSERVED=250;RATIO=0.567;BF=13.5	GT	0/1
1	235383108	.	N	<DEL>	5.34	LOWBFSCORE	CN=1;SVTYPE=DEL;END=235383860;EXPECTED=66;OBSERVED=29;RATIO=0.439;BF=5.34	GT	0/1
1	236700797	.	N	<DEL>	17.8	PASS	CN=0;SVTYPE=DEL;END=236700885;EXPECTED=96;OBSERVED=4;RATIO=0.0417;BF=17.8	GT	1/1
1	248636652	.	N	<DUP>	9.04	PASS	CN=3;SVTYPE=DUP;END=248652837;EXPECTED=1027;OBSERVED=1536;RATIO=1.5;BF=9.04	GT	./.
1	248721845	CNVR600.1	N	<DEL>	142	PASS	CN=0;SVTYPE=DEL;END=248802559;EXPECTED=1494;OBSERVED=301;RATIO=0.201;BF=142	GT	1/1
10	18129622	.	N	<DUP>	13.6	PASS	CN=5;SVTYPE=DUP;END=18145281;EXPECTED=66;OBSERVED=179;RATIO=2.71;BF=13.6	GT	./.
10	46961970	CNVR4712.9	N	<DEL>	13	PASS	CN=1;SVTYPE=DEL;END=47000257;EXPECTED=2392;OBSERVED=1698;RATIO=0.71;BF=13	GT	0/1
10	49203411	CNVR4717.2	N	<DEL>	33.7	PASS	CN=1;SVTYPE=DEL;END=49381136;EXPECTED=468;OBSERVED=220;RATIO=0.47;BF=33.7	GT	0/1
10	51748476	CNVR4732.1	N	<DUP>	4.76	LOWBFSCORE	CN=3;SVTYPE=DUP;END=51748698;EXPECTED=117;OBSERVED=181;RATIO=1.55;BF=4.76	GT	./.
10	51970583	.	N	<DUP>	9.34	PASS	CN=5;SVTYPE=DUP;END=51978390;EXPECTED=51;OBSERVED=117;RATIO=2.29;BF=9.34	GT	./.
10	81471456	CNVR4815.2	N	<DEL>	8.03	PASS	CN=1;SVTYPE=DEL;END=81472241;EXPECTED=263;OBSERVED=147;RATIO=0.559;BF=8.03	GT	0/1
10	94695571	.	N	<DEL>	5.25	LOWBFSCORE	CN=0;SVTYPE=DEL;END=94695642;EXPECTED=34;OBSERVED=7;RATIO=0.206;BF=5.25	GT	1/1
10	95389015	CNVR4858.1	N	<DEL>	6.1	LOWBFSCORE	CN=1;SVTYPE=DEL;END=95389062;EXPECTED=83;OBSERVED=37;RATIO=0.446;BF=6.1	GT	0/1
10	124329678	CNVR4912.4	N	<DEL>	8.32	PASS	CN=1;SVTYPE=DEL;END=124330453;EXPECTED=91;OBSERVED=39;RATIO=0.429;BF=8.32	GT	0/1
10	124348460	CNVR4912.4	N	<DUP>	5.98	LOWBFSCORE	CN=3;SVTYPE=DUP;END=124351033;EXPECTED=398;OBSERVED=530;RATIO=1.33;BF=5.98	GT	./.
10	124360507	CNVR4912.1	N	<DUP>	5.96	LOWBFSCORE	CN=3;SVTYPE=DUP;END=124361636;EXPECTED=135;OBSERVED=212;RATIO=1.57;BF=5.96	GT	./.
11	4976002	CNVR5040.1	N	<DUP>	9.1	PASS	CN=3;SVTYPE=DUP;END=4976943;EXPECTED=215;OBSERVED=367;RATIO=1.71;BF=9.1	GT	./.
11	18955363	CNVR5091.2	N	<DEL>	4.65	LOWBFSCORE	CN=1;SVTYPE=DEL;END=18956331;EXPECTED=517;OBSERVED=343;RATIO=0.663;BF=4.65	GT	0/1
11	55370917	CNVR5179.1	N	<DEL>	29.1	PASS	CN=1;SVTYPE=DEL;END=55419315;EXPECTED=1293;OBSERVED=715;RATIO=0.553;BF=29.1	GT	0/1
11	71544246	CNVR5223.1	N	<DEL>	9.13	PASS	CN=1;SVTYPE=DEL;END=71548608;EXPECTED=88;OBSERVED=31;RATIO=0.352;BF=9.13	GT	0/1
11	76637601	.	N	<DEL>	7.75	LOWBFSCORE	CN=0;SVTYPE=DEL;END=76637711;EXPECTED=45;OBSERVED=6;RATIO=0.133;BF=7.75	GT	1/1
11	89701672	.	N	<DUP>	11.3	PASS	CN=4;SVTYPE=DUP;END=89707057;EXPECTED=117;OBSERVED=216;RATIO=1.85;BF=11.3	GT	./.
12	1590009	.	N	<DEL>	6.73	LOWBFSCORE	CN=1;SVTYPE=DEL;END=1590056;EXPECTED=64;OBSERVED=22;RATIO=0.344;BF=6.73	GT	0/1
12	8329595	CNVR5422.3	N	<DEL>	9.38	PASS	CN=1;SVTYPE=DEL;END=8377428;EXPECTED=767;OBSERVED=534;RATIO=0.696;BF=9.38	GT	0/1
12	10560928	.	N	<DEL>	9.46	PASS	CN=1;SVTYPE=DEL;END=10562174;EXPECTED=158;OBSERVED=84;RATIO=0.532;BF=9.46	GT	0/1
12	11506041	CNVR5435.2	N	<DEL>	16.6	PASS	CN=1;SVTYPE=DEL;END=11508487;EXPECTED=345;OBSERVED=185;RATIO=0.536;BF=16.6	GT	0/1
12	31247449	CNVR5483.1	N	<DUP>	10.3	PASS	CN=3;SVTYPE=DUP;END=31249313;EXPECTED=207;OBSERVED=327;RATIO=1.58;BF=10.3	GT	./.
12	51740407	.	N	<DEL>	14.6	PASS	CN=0;SVTYPE=DEL;END=51740422;EXPECTED=77;OBSERVED=5;RATIO=0.0649;BF=14.6	GT	1/1
12	52965728	CNVR5535.1	N	<DUP>	6.45	LOWBFSCORE	CN=5;SVTYPE=DUP;END=52965788;EXPECTED=40;OBSERVED=94;RATIO=2.35;BF=6.45	GT	./.
12	56551252	.	N	<DUP>	4.7	LOWBFSCORE	CN=3;SVTYPE=DUP;END=56551329;EXPECTED=88;OBSERVED=144;RATIO=1.64;BF=4.7	GT	./.
13	103410760	.	N	<DEL>	5.06	LOWBFSCORE	CN=0;SVTYPE=DEL;END=103410926;EXPECTED=27;OBSERVED=3;RATIO=0.111;BF=5.06	GT	1/1
13	115004825	CNVR6071.3	N	<DUP>	4.84	LOWBFSCORE	CN=3;SVTYPE=DUP;END=115004965;EXPECTED=88;OBSERVED=145;RATIO=1.65;BF=4.84	GT	./.
14	19558991	CNVR6072.1	N	<DEL>	5.34	LOWBFSCORE	CN=0;SVTYPE=DEL;END=19559164;EXPECTED=25;OBSERVED=1;RATIO=0.04;BF=5.34	GT	1/1
14	20002225	CNVR6072.6	N	<DEL>	18.3	PASS	CN=1;SVTYPE=DEL;END=20182075;EXPECTED=498;OBSERVED=278;RATIO=0.558;BF=18.3	GT	0/1
14	24437966	.	N	<DEL>	25.7	PASS	CN=1;SVTYPE=DEL;END=24473579;EXPECTED=764;OBSERVED=449;RATIO=0.588;BF=25.7	GT	0/1
14	74004126	CNVR6188.1	N	<DEL>	7.51	LOWBFSCORE	CN=1;SVTYPE=DEL;END=74008399;EXPECTED=214;OBSERVED=124;RATIO=0.579;BF=7.51	GT	0/1
15	20739497	CNVR6296.13	N	<DEL>	16.6	PASS	CN=1;SVTYPE=DEL;END=20745179;EXPECTED=250;OBSERVED=114;RATIO=0.456;BF=16.6	GT	0/1
15	22368576	CNVR6297.4	N	<DEL>	5.56	LOWBFSCORE	CN=1;SVTYPE=DEL;END=22383423;EXPECTED=2007;OBSERVED=1427;RATIO=0.711;BF=5.56	GT	0/1
15	28467174	CNVR6328.1	N	<DEL>	6.87	LOWBFSCORE	CN=1;SVTYPE=DEL;END=28467361;EXPECTED=129;OBSERVED=62;RATIO=0.481;BF=6.87	GT	0/1
15	30665181	CNVR6337.1	N	<DEL>	24.8	PASS	CN=1;SVTYPE=DEL;END=30702470;EXPECTED=365;OBSERVED=162;RATIO=0.444;BF=24.8	GT	0/1
15	31267134	.	N	<DEL>	6.54	LOWBFSCORE	CN=1;SVTYPE=DEL;END=31267206;EXPECTED=56;OBSERVED=17;RATIO=0.304;BF=6.54	GT	0/1
15	32449809	CNVR6345.2	N	<DUP>	5.57	LOWBFSCORE	CN=5;SVTYPE=DUP;END=32449976;EXPECTED=27;OBSERVED=72;RATIO=2.67;BF=5.57	GT	./.
15	32455427	CNVR6345.2	N	<DUP>	6.24	LOWBFSCORE	CN=5;SVTYPE=DUP;END=32455536;EXPECTED=31;OBSERVED=83;RATIO=2.68;BF=6.24	GT	./.
15	32684983	CNVR6346.1	N	<DEL>	106	PASS	CN=0;SVTYPE=DEL;END=32738099;EXPECTED=759;OBSERVED=175;RATIO=0.231;BF=106	GT	1/1
15	32743802	CNVR6346.1	N	<DEL>	6.79	LOWBFSCORE	CN=1;SVTYPE=DEL;END=32745013;EXPECTED=118;OBSERVED=60;RATIO=0.508;BF=6.79	GT	0/1
15	32890089	.	N	<DEL>	14.8	PASS	CN=0;SVTYPE=DEL;END=32890378;EXPECTED=99;OBSERVED=17;RATIO=0.172;BF=14.8	GT	1/1
15	34673612	CNVR6351.4	N	<DEL>	10.3	PASS	CN=1;SVTYPE=DEL;END=34674057;EXPECTED=102;OBSERVED=34;RATIO=0.333;BF=10.3	GT	0/1
15	34677455	CNVR6351.3	N	<DUP>	14	PASS	CN=4;SVTYPE=DUP;END=34820278;EXPECTED=94;OBSERVED=206;RATIO=2.19;BF=14	GT	./.
15	34823849	CNVR6351.3	N	<DEL>	7.18	LOWBFSCORE	CN=0;SVTYPE=DEL;END=34825163;EXPECTED=32;OBSERVED=0;RATIO=0;BF=7.18	GT	1/1
15	43170747	.	N	<DEL>	6.37	LOWBFSCORE	CN=1;SVTYPE=DEL;END=43170815;EXPECTED=149;OBSERVED=77;RATIO=0.517;BF=6.37	GT	0/1
15	43888405	CNVR6365.1	N	<DUP>	7.05	LOWBFSCORE	CN=3;SVTYPE=DUP;END=43891150;EXPECTED=313;OBSERVED=436;RATIO=1.39;BF=7.05	GT	./.
15	74363251	CNVR6448.1	N	<DEL>	11.7	PASS	CN=1;SVTYPE=DEL;END=74363811;EXPECTED=156;OBSERVED=72;RATIO=0.462;BF=11.7	GT	0/1
15	75561138	CNVR6452.1	N	<DEL>	6.8	LOWBFSCORE	CN=1;SVTYPE=DEL;END=75562083;EXPECTED=118;OBSERVED=62;RATIO=0.525;BF=6.8	GT	0/1
15	75586070	CNVR6452.1	N	<DUP>	7.97	LOWBFSCORE	CN=3;SVTYPE=DUP;END=75586602;EXPECTED=371;OBSERVED=525;RATIO=1.42;BF=7.97	GT	./.
15	84904587	CNVR6486.2	N	<DEL>	9.18	PASS	CN=1;SVTYPE=DEL;END=84909534;EXPECTED=151;OBSERVED=71;RATIO=0.47;BF=9.18	GT	0/1
15	91474505	.	N	<DUP>	5.09	LOWBFSCORE	CN=3;SVTYPE=DUP;END=91474786;EXPECTED=182;OBSERVED=261;RATIO=1.43;BF=5.09	GT	./.
16	2152062	CNVR6597.1	N	<DUP>	4.7	LOWBFSCORE	CN=3;SVTYPE=DUP;END=2152257;EXPECTED=111;OBSERVED=174;RATIO=1.57;BF=4.7	GT	./.
16	13002336	.	N	<DEL>	7.44	LOWBFSCORE	CN=1;SVTYPE=DEL;END=13002438;EXPECTED=68;OBSERVED=22;RATIO=0.324;BF=7.44	GT	0/1
16	16367546	.	N	<DUP>	5.86	LOWBFSCORE	CN=3;SVTYPE=DUP;END=16367932;EXPECTED=96;OBSERVED=155;RATIO=1.61;BF=5.86	GT	./.
16	21763690	CNVR6668.5	N	<DUP>	9.03	PASS	CN=5;SVTYPE=DUP;END=21764445;EXPECTED=57;OBSERVED=131;RATIO=2.3;BF=9.03	GT	./.
16	70162687	CNVR6764.1	N	<DEL>	10.8	PASS	CN=1;SVTYPE=DEL;END=70170289;EXPECTED=672;OBSERVED=451;RATIO=0.671;BF=10.8	GT	0/1
16	70187294	CNVR6764.1	N	<DEL>	7.3	LOWBFSCORE	CN=1;SVTYPE=DEL;END=70190782;EXPECTED=488;OBSERVED=316;RATIO=0.648;BF=7.3	GT	0/1
16	74411872	CNVR6778.2	N	<DEL>	20.8	PASS	CN=1;SVTYPE=DEL;END=74425978;EXPECTED=1124;OBSERVED=755;RATIO=0.672;BF=20.8	GT	0/1
16	74444803	CNVR6778.2	N	<DUP>	6.61	LOWBFSCORE	CN=3;SVTYPE=DUP;END=74446144;EXPECTED=241;OBSERVED=341;RATIO=1.41;BF=6.61	GT	./.
16	74447477	CNVR6778.2	N	<DEL>	7.69	LOWBFSCORE	CN=1;SVTYPE=DEL;END=74455168;EXPECTED=618;OBSERVED=426;RATIO=0.689;BF=7.69	GT	0/1
17	18380169	CNVR7014.1	N	<DEL>	15.8	PASS	CN=1;SVTYPE=DEL;END=18389449;EXPECTED=351;OBSERVED=191;RATIO=0.544;BF=15.8	GT	0/1
17	20353286	CNVR7021.1	N	<DEL>	21.9	PASS	CN=1;SVTYPE=DEL;END=20359984;EXPECTED=206;OBSERVED=83;RATIO=0.403;BF=21.9	GT	0/1
17	20370745	CNVR7021.1	N	<DUP>	4.58	LOWBFSCORE	CN=5;SVTYPE=DUP;END=20370783;EXPECTED=23;OBSERVED=58;RATIO=2.52;BF=4.58	GT	./.
17	34522685	CNVR7077.1	N	<DEL>	34.5	PASS	CN=0;SVTYPE=DEL;END=34588329;EXPECTED=225;OBSERVED=49;RATIO=0.218;BF=34.5	GT	1/1
17	39421630	CNVR7096.1	N	<DEL>	10.9	PASS	CN=1;SVTYPE=DEL;END=39422112;EXPECTED=197;OBSERVED=90;RATIO=0.457;BF=10.9	GT	0/1
17	44171926	CNVR7114.3	N	<DUP>	12.2	PASS	CN=3;SVTYPE=DUP;END=44249509;EXPECTED=2196;OBSERVED=2994;RATIO=1.36;BF=12.2	GT	./.
17	44399688	CNVR7114.2	N	<DEL>	48.8	PASS	CN=1;SVTYPE=DEL;END=44594799;EXPECTED=395;OBSERVED=115;RATIO=0.291;BF=48.8	GT	0/1
17	44617542	CNVR7114.2	N	<DUP>	16.7	PASS	CN=3;SVTYPE=DUP;END=44632945;EXPECTED=935;OBSERVED=1251;RATIO=1.34;BF=16.7	GT	./.
17	61972833	.	N	<DUP>	9.33	PASS	CN=4;SVTYPE=DUP;END=61973595;EXPECTED=76;OBSERVED=154;RATIO=2.03;BF=9.33	GT	./.
18	44542731	CNVR7319.1	N	<DEL>	43	PASS	CN=1;SVTYPE=DEL;END=44556213;EXPECTED=1250;OBSERVED=567;RATIO=0.454;BF=43	GT	0/1
18	59814127	.	N	<DEL>	4.93	LOWBFSCORE	CN=1;SVTYPE=DEL;END=59815669;EXPECTED=111;OBSERVED=63;RATIO=0.568;BF=4.93	GT	0/1
19	7032324	CNVR7517.1	N	<DEL>	14.2	PASS	CN=1;SVTYPE=DEL;END=7040155;EXPECTED=124;OBSERVED=38;RATIO=0.306;BF=14.2	GT	0/1
19	14877712	.	N	<DEL>	17.4	PASS	CN=1;SVTYPE=DEL;END=14877981;EXPECTED=168;OBSERVED=44;RATIO=0.262;BF=17.4	GT	0/1
19	21116830	.	N	<DEL>	5.5	LOWBFSCORE	CN=1;SVTYPE=DEL;END=21133108;EXPECTED=550;OBSERVED=379;RATIO=0.689;BF=5.5	GT	0/1
19	39262469	.	N	<DEL>	9.9	PASS	CN=0;SVTYPE=DEL;END=39262670;EXPECTED=45;OBSERVED=0;RATIO=0;BF=9.9	GT	1/1
19	41627862	CNVR7644.1	N	<DEL>	8.99	PASS	CN=1;SVTYPE=DEL;END=41628038;EXPECTED=105;OBSERVED=39;RATIO=0.371;BF=8.99	GT	0/1
19	46623587	CNVR7673.1	N	<DEL>	12.9	PASS	CN=1;SVTYPE=DEL;END=46627906;EXPECTED=324;OBSERVED=181;RATIO=0.559;BF=12.9	GT	0/1
19	52146608	CNVR7702.1	N	<DEL>	24.6	PASS	CN=1;SVTYPE=DEL;END=52149893;EXPECTED=582;OBSERVED=317;RATIO=0.545;BF=24.6	GT	0/1
19	55328989	CNVR7725.1	N	<DEL>	28.1	PASS	CN=0;SVTYPE=DEL;END=55363737;EXPECTED=153;OBSERVED=15;RATIO=0.098;BF=28.1	GT	1/1
2	10959400	.	N	<DEL>	7.43	LOWBFSCORE	CN=0;SVTYPE=DEL;END=10959480;EXPECTED=38;OBSERVED=3;RATIO=0.0789;BF=7.43	GT	1/1
2	28824766	.	N	<DEL>	6.61	LOWBFSCORE	CN=1;SVTYPE=DEL;END=28824831;EXPECTED=89;OBSERVED=39;RATIO=0.438;BF=6.61	GT	0/1
2	37406601	.	N	<DEL>	6.93	LOWBFSCORE	CN=0;SVTYPE=DEL;END=37406727;EXPECTED=42;OBSERVED=7;RATIO=0.167;BF=6.93	GT	1/1
2	64327532	.	N	<DEL>	4.75	LOWBFSCORE	CN=0;SVTYPE=DEL;END=64327633;EXPECTED=28;OBSERVED=5;RATIO=0.179;BF=4.75	GT	1/1
2	85925687	CNVR857.1	N	<DEL>	5.56	LOWBFSCORE	CN=1;SVTYPE=DEL;END=85925697;EXPECTED=108;OBSERVED=56;RATIO=0.519;BF=5.56	GT	0/1
2	96698045	.	N	<DEL>	9.96	PASS	CN=0;SVTYPE=DEL;END=96698107;EXPECTED=47;OBSERVED=1;RATIO=0.0213;BF=9.96	GT	1/1
2	97854824	CNVR886.2	N	<DEL>	6.07	LOWBFSCORE	CN=0;SVTYPE=DEL;END=97855027;EXPECTED=27;OBSERVED=0;RATIO=0;BF=6.07	GT	1/1
2	97875418	CNVR886.1	N	<DUP>	6.31	LOWBFSCORE	CN=3;SVTYPE=DUP;END=97875609;EXPECTED=116;OBSERVED=184;RATIO=1.59;BF=6.31	GT	./.
2	97881038	.	N	<DUP>	5.45	LOWBFSCORE	CN=3;SVTYPE=DUP;END=97882942;EXPECTED=117;OBSERVED=178;RATIO=1.52;BF=5.45	GT	./.
2	98127601	CNVR888.3	N	<DEL>	47.1	PASS	CN=0;SVTYPE=DEL;END=98164194;EXPECTED=280;OBSERVED=52;RATIO=0.186;BF=47.1	GT	1/1
2	103001338	.	N	<DEL>	5.42	LOWBFSCORE	CN=1;SVTYPE=DEL;END=103001458;EXPECTED=56;OBSERVED=21;RATIO=0.375;BF=5.42	GT	0/1
2	130955931	CNVR985.1	N	<DEL>	13.3	PASS	CN=0;SVTYPE=DEL;END=130955933;EXPECTED=62;OBSERVED=0;RATIO=0;BF=13.3	GT	1/1
2	132290842	.	N	<DEL>	5.13	LOWBFSCORE	CN=1;SVTYPE=DEL;END=132290971;EXPECTED=145;OBSERVED=83;RATIO=0.572;BF=5.13	GT	0/1
2	152461074	CNVR1026.1	N	<DEL>	12.4	PASS	CN=0;SVTYPE=DEL;END=152464122;EXPECTED=57;OBSERVED=1;RATIO=0.0175;BF=12.4	GT	1/1
2	167144872	.	N	<DEL>	6.04	LOWBFSCORE	CN=1;SVTYPE=DEL;END=167145252;EXPECTED=139;OBSERVED=75;RATIO=0.54;BF=6.04	GT	0/1
2	240981230	CNVR1213.3	N	<DUP>	8.05	PASS	CN=3;SVTYPE=DUP;END=240982399;EXPECTED=502;OBSERVED=740;RATIO=1.47;BF=8.05	GT	./.
20	1569206	CNVR7763.1	N	<DUP>	31.1	PASS	CN=4;SVTYPE=DUP;END=1592359;EXPECTED=318;OBSERVED=638;RATIO=2.01;BF=31.1	GT	./.
20	1895745	CNVR7764.2	N	<DEL>	27.3	PASS	CN=0;SVTYPE=DEL;END=1896101;EXPECTED=208;OBSERVED=30;RATIO=0.144;BF=27.3	GT	1/1
20	31688232	.	N	<DUP>	6.3	LOWBFSCORE	CN=4;SVTYPE=DUP;END=31688299;EXPECTED=54;OBSERVED=113;RATIO=2.09;BF=6.3	GT	./.
21	10906905	CNVR7947.10	N	<DEL>	16.8	PASS	CN=1;SVTYPE=DEL;END=10944787;EXPECTED=725;OBSERVED=469;RATIO=0.647;BF=16.8	GT	0/1
22	16287254	CNVR8071.2	N	<DEL>	4.63	LOWBFSCORE	CN=1;SVTYPE=DEL;END=16287885;EXPECTED=269;OBSERVED=157;RATIO=0.584;BF=4.63	GT	0/1
22	17264509	.	N	<DEL>	6.11	LOWBFSCORE	CN=1;SVTYPE=DEL;END=17265299;EXPECTED=91;OBSERVED=37;RATIO=0.407;BF=6.11	GT	0/1
22	20378684	CNVR8094.9	N	<DUP>	7.47	LOWBFSCORE	CN=3;SVTYPE=DUP;END=20379591;EXPECTED=156;OBSERVED=254;RATIO=1.63;BF=7.47	GT	./.
22	22599226	CNVR8103.5	N	<DEL>	135	PASS	CN=1;SVTYPE=DEL;END=23237874;EXPECTED=5089;OBSERVED=2639;RATIO=0.519;BF=135	GT	0/1
22	39357392	CNVR8164.1	N	<DEL>	24.3	PASS	CN=0;SVTYPE=DEL;END=39357686;EXPECTED=144;OBSERVED=2;RATIO=0.0139;BF=24.3	GT	1/1
22	39387337	CNVR8164.1	N	<DUP>	6.26	LOWBFSCORE	CN=3;SVTYPE=DUP;END=39388450;EXPECTED=306;OBSERVED=460;RATIO=1.5;BF=6.26	GT	./.
3	15737641	.	N	<DEL>	5.09	LOWBFSCORE	CN=1;SVTYPE=DEL;END=15737752;EXPECTED=41;OBSERVED=12;RATIO=0.293;BF=5.09	GT	0/1
3	39161413	.	N	<DUP>	4.86	LOWBFSCORE	CN=4;SVTYPE=DUP;END=39161511;EXPECTED=39;OBSERVED=81;RATIO=2.08;BF=4.86	GT	./.
3	49758233	.	N	<DUP>	5.26	LOWBFSCORE	CN=3;SVTYPE=DUP;END=49758538;EXPECTED=256;OBSERVED=354;RATIO=1.38;BF=5.26	GT	./.
3	75786029	CNVR1432.5	N	<DUP>	16.6	PASS	CN=4;SVTYPE=DUP;END=75790923;EXPECTED=167;OBSERVED=357;RATIO=2.14;BF=16.6	GT	./.
3	164772898	.	N	<DEL>	7.38	LOWBFSCORE	CN=1;SVTYPE=DEL;END=164773183;EXPECTED=82;OBSERVED=31;RATIO=0.378;BF=7.38	GT	0/1
4	9212383	.	N	<DEL>	24	PASS	CN=0;SVTYPE=DEL;END=9237728;EXPECTED=127;OBSERVED=4;RATIO=0.0315;BF=24	GT	1/1
4	69403343	CNVR1953.1	N	<DEL>	108	PASS	CN=0;SVTYPE=DEL;END=69434202;EXPECTED=549;OBSERVED=3;RATIO=0.00546;BF=108	GT	1/1
4	70146219	CNVR1957.2	N	<DEL>	17.1	PASS	CN=1;SVTYPE=DEL;END=70160527;EXPECTED=457;OBSERVED=259;RATIO=0.567;BF=17.1	GT	0/1
4	78987139	.	N	<DEL>	4.55	LOWBFSCORE	CN=1;SVTYPE=DEL;END=78987170;EXPECTED=54;OBSERVED=22;RATIO=0.407;BF=4.55	GT	0/1
4	106317313	.	N	<DEL>	5.51	LOWBFSCORE	CN=1;SVTYPE=DEL;END=106317574;EXPECTED=47;OBSERVED=14;RATIO=0.298;BF=5.51	GT	0/1
4	145041643	.	N	<DEL>	6.31	LOWBFSCORE	CN=0;SVTYPE=DEL;END=145041741;EXPECTED=38;OBSERVED=6;RATIO=0.158;BF=6.31	GT	1/1
4	154631521	.	N	<DEL>	7.28	LOWBFSCORE	CN=1;SVTYPE=DEL;END=154631641;EXPECTED=95;OBSERVED=38;RATIO=0.4;BF=7.28	GT	0/1
4	155243483	.	N	<DEL>	5.53	LOWBFSCORE	CN=1;SVTYPE=DEL;END=155244481;EXPECTED=121;OBSERVED=67;RATIO=0.554;BF=5.53	GT	0/1
5	833888	CNVR2280.3	N	<DEL>	14.6	PASS	CN=1;SVTYPE=DEL;END=843839;EXPECTED=414;OBSERVED=240;RATIO=0.58;BF=14.6	GT	0/1
5	41033940	.	N	<DEL>	5.62	LOWBFSCORE	CN=1;SVTYPE=DEL;END=41033966;EXPECTED=43;OBSERVED=12;RATIO=0.279;BF=5.62	GT	0/1
5	68863554	CNVR2494.7	N	<DUP>	5.22	LOWBFSCORE	CN=4;SVTYPE=DUP;END=68868377;EXPECTED=50;OBSERVED=95;RATIO=1.9;BF=5.22	GT	./.
5	101724392	.	N	<DEL>	5.21	LOWBFSCORE	CN=0;SVTYPE=DEL;END=101724529;EXPECTED=29;OBSERVED=4;RATIO=0.138;BF=5.21	GT	1/1
5	140552417	CNVR2624.1	N	<DEL>	7.92	LOWBFSCORE	CN=1;SVTYPE=DEL;END=140560021;EXPECTED=2847;OBSERVED=2018;RATIO=0.709;BF=7.92	GT	0/1
5	147553797	CNVR2637.2	N	<DEL>	7.02	LOWBFSCORE	CN=0;SVTYPE=DEL;END=147553933;EXPECTED=31;OBSERVED=0;RATIO=0;BF=7.02	GT	1/1
5	175388054	.	N	<DUP>	23.6	PASS	CN=5;SVTYPE=DUP;END=175394270;EXPECTED=132;OBSERVED=330;RATIO=2.5;BF=23.6	GT	./.
5	177166601	.	N	<DEL>	6.83	LOWBFSCORE	CN=0;SVTYPE=DEL;END=177171968;EXPECTED=39;OBSERVED=6;RATIO=0.154;BF=6.83	GT	1/1
5	180375355	CNVR2719.1	N	<DUP>	14.3	PASS	CN=3;SVTYPE=DUP;END=180429785;EXPECTED=1140;OBSERVED=1502;RATIO=1.32;BF=14.3	GT	./.
6	29911899	CNVR2829.7	N	<DUP>	23.1	PASS	CN=4;SVTYPE=DUP;END=29913232;EXPECTED=450;OBSERVED=801;RATIO=1.78;BF=23.1	GT	./.
6	31962022	CNVR2843.6	N	<DEL>	26.9	PASS	CN=1;SVTYPE=DEL;END=31964377;EXPECTED=1227;OBSERVED=700;RATIO=0.57;BF=26.9	GT	0/1
6	31995013	CNVR2843.6	N	<DUP>	6.43	LOWBFSCORE	CN=6;SVTYPE=DUP;END=31995222;EXPECTED=31;OBSERVED=88;RATIO=2.84;BF=6.43	GT	./.
6	32011784	CNVR2843.6	N	<DUP>	5.89	LOWBFSCORE	CN=4;SVTYPE=DUP;END=32012493;EXPECTED=89;OBSERVED=161;RATIO=1.81;BF=5.89	GT	./.
6	32485516	CNVR2845.21	N	<DEL>	11.7	PASS	CN=1;SVTYPE=DEL;END=32498001;EXPECTED=237;OBSERVED=122;RATIO=0.515;BF=11.7	GT	0/1
6	32551886	CNVR2845.21	N	<DUP>	12.3	PASS	CN=3;SVTYPE=DUP;END=32610030;EXPECTED=616;OBSERVED=874;RATIO=1.42;BF=12.3	GT	./.
6	130152464	.	N	<DEL>	4.94	LOWBFSCORE	CN=0;SVTYPE=DEL;END=130152531;EXPECTED=24;OBSERVED=1;RATIO=0.0417;BF=4.94	GT	1/1
6	147635400	.	N	<DEL>	4.97	LOWBFSCORE	CN=1;SVTYPE=DEL;END=147635467;EXPECTED=81;OBSERVED=37;RATIO=0.457;BF=4.97	GT	0/1
6	161054785	CNVR3133.1	N	<DUP>	6.66	LOWBFSCORE	CN=3;SVTYPE=DUP;END=161056336;EXPECTED=216;OBSERVED=329;RATIO=1.52;BF=6.66	GT	./.
7	6820959	.	N	<DUP>	15.4	PASS	CN=3;SVTYPE=DUP;END=6840706;EXPECTED=234;OBSERVED=389;RATIO=1.66;BF=15.4	GT	./.
7	14025741	.	N	<DEL>	6.92	LOWBFSCORE	CN=1;SVTYPE=DEL;END=14026310;EXPECTED=77;OBSERVED=32;RATIO=0.416;BF=6.92	GT	0/1
7	37934068	CNVR3352.1	N	<DEL>	6.14	LOWBFSCORE	CN=1;SVTYPE=DEL;END=37934295;EXPECTED=52;OBSERVED=16;RATIO=0.308;BF=6.14	GT	0/1
7	75617401	.	N	<DUP>	5.45	LOWBFSCORE	CN=3;SVTYPE=DUP;END=75617659;EXPECTED=176;OBSERVED=253;RATIO=1.44;BF=5.45	GT	./.
7	76063355	CNVR3462.1	N	<DUP>	8.8	PASS	CN=3;SVTYPE=DUP;END=76069658;EXPECTED=169;OBSERVED=269;RATIO=1.59;BF=8.8	GT	./.
7	76121470	CNVR3462.1	N	<DUP>	15.1	PASS	CN=4;SVTYPE=DUP;END=76129837;EXPECTED=136;OBSERVED=275;RATIO=2.02;BF=15.1	GT	./.
7	76240782	CNVR3463.10	N	<DUP>	10.9	PASS	CN=3;SVTYPE=DUP;END=76241130;EXPECTED=228;OBSERVED=370;RATIO=1.62;BF=10.9	GT	./.
7	102114096	CNVR3518.1	N	<DUP>	16.6	PASS	CN=3;SVTYPE=DUP;END=102137411;EXPECTED=596;OBSERVED=837;RATIO=1.4;BF=16.6	GT	./.
7	102246305	CNVR3518.1	N	<DUP>	14.9	PASS	CN=3;SVTYPE=DUP;END=102312048;EXPECTED=280;OBSERVED=440;RATIO=1.57;BF=14.9	GT	./.
7	134221803	.	N	<DEL>	5.63	LOWBFSCORE	CN=1;SVTYPE=DEL;END=134222413;EXPECTED=128;OBSERVED=72;RATIO=0.562;BF=5.63	GT	0/1
7	143268911	CNVR3594.2	N	<DUP>	13.5	PASS	CN=3;SVTYPE=DUP;END=143418471;EXPECTED=235;OBSERVED=379;RATIO=1.61;BF=13.5	GT	./.
7	143884022	CNVR3598.4	N	<DUP>	9.3	PASS	CN=3;SVTYPE=DUP;END=143929936;EXPECTED=170;OBSERVED=276;RATIO=1.62;BF=9.3	GT	./.
8	7189909	CNVR3771.8	N	<DUP>	11.6	PASS	CN=3;SVTYPE=DUP;END=7274349;EXPECTED=947;OBSERVED=1233;RATIO=1.3;BF=11.6	GT	./.
8	7398474	CNVR3771.8	N	<DEL>	4.76	LOWBFSCORE	CN=1;SVTYPE=DEL;END=7398541;EXPECTED=88;OBSERVED=44;RATIO=0.5;BF=4.76	GT	0/1
8	7806651	CNVR3772.4	N	<DEL>	26.4	PASS	CN=0;SVTYPE=DEL;END=7835507;EXPECTED=134;OBSERVED=7;RATIO=0.0522;BF=26.4	GT	1/1
8	11989926	CNVR3785.8	N	<DUP>	16	PASS	CN=3;SVTYPE=DUP;END=11996269;EXPECTED=1933;OBSERVED=2963;RATIO=1.53;BF=16	GT	./.
8	12043861	CNVR3785.5	N	<DUP>	5.14	LOWBFSCORE	CN=3;SVTYPE=DUP;END=12044342;EXPECTED=200;OBSERVED=289;RATIO=1.44;BF=5.14	GT	./.
8	12285166	CNVR3786.4	N	<DEL>	10.4	PASS	CN=1;SVTYPE=DEL;END=12286623;EXPECTED=101;OBSERVED=39;RATIO=0.386;BF=10.4	GT	0/1
8	17396334	.	N	<DEL>	7.72	LOWBFSCORE	CN=0;SVTYPE=DEL;END=17396431;EXPECTED=55;OBSERVED=12;RATIO=0.218;BF=7.72	GT	1/1
9	14807	CNVR4134.3	N	<DUP>	12.3	PASS	CN=3;SVTYPE=DUP;END=17855;EXPECTED=285;OBSERVED=431;RATIO=1.51;BF=12.3	GT	./.
9	178816	CNVR4135.1	N	<DUP>	12	PASS	CN=5;SVTYPE=DUP;END=178969;EXPECTED=94;OBSERVED=230;RATIO=2.45;BF=12	GT	./.
9	39088420	.	N	<DUP>	10.5	PASS	CN=3;SVTYPE=DUP;END=39109284;EXPECTED=368;OBSERVED=518;RATIO=1.41;BF=10.5	GT	./.
9	39144237	CNVR4262.1	N	<DUP>	16.3	PASS	CN=3;SVTYPE=DUP;END=39177499;EXPECTED=740;OBSERVED=1041;RATIO=1.41;BF=16.3	GT	./.
9	43628634	.	N	<DEL>	16.9	PASS	CN=0;SVTYPE=DEL;END=43628694;EXPECTED=107;OBSERVED=13;RATIO=0.121;BF=16.9	GT	1/1
9	43828078	.	N	<DEL>	25.1	PASS	CN=0;SVTYPE=DEL;END=43861206;EXPECTED=128;OBSERVED=4;RATIO=0.0312;BF=25.1	GT	1/1
9	69238230	.	N	<DUP>	37.5	PASS	CN=4;SVTYPE=DUP;END=69424176;EXPECTED=417;OBSERVED=784;RATIO=1.88;BF=37.5	GT	./.
9	138438027	.	N	<DEL>	11.3	PASS	CN=0;SVTYPE=DEL;END=138438098;EXPECTED=66;OBSERVED=8;RATIO=0.121;BF=11.3	GT	1/1
9	138440554	.	N	<DEL>	20	PASS	CN=1;SVTYPE=DEL;END=138441790;EXPECTED=262;OBSERVED=114;RATIO=0.435;BF=20	GT	0/1
X	6451786	.	N	<DEL>	5.95	LOWBFSCORE	CN=1;SVTYPE=DEL;END=6452538;EXPECTED=175;OBSERVED=106;RATIO=0.606;BF=5.95	GT	0/1
X	7811245	.	N	<DUP>	5.6	LOWBFSCORE	CN=3;SVTYPE=DUP;END=7812057;EXPECTED=502;OBSERVED=649;RATIO=1.29;BF=5.6	GT	./.
X	101619966	.	N	<DEL>	11.2	PASS	CN=0;SVTYPE=DEL;END=101620252;EXPECTED=51;OBSERVED=1;RATIO=0.0196;BF=11.2	GT	1/1
X	119210842	.	N	<DEL>	14.7	PASS	CN=1;SVTYPE=DEL;END=119211253;EXPECTED=131;OBSERVED=38;RATIO=0.29;BF=14.7	GT	0/1
X	134947907	CNVR8449.4	N	<DUP>	5.51	LOWBFSCORE	CN=3;SVTYPE=DUP;END=134963465;EXPECTED=324;OBSERVED=431;RATIO=1.33;BF=5.51	GT	./.
X	140785622	CNVR8460.1	N	<DEL>	8.25	PASS	CN=1;SVTYPE=DEL;END=140786562;EXPECTED=320;OBSERVED=203;RATIO=0.634;BF=8.25	GT	0/1
X	153453259	CNVR8489.1	N	<DUP>	10.8	PASS	CN=3;SVTYPE=DUP;END=153461531;EXPECTED=292;OBSERVED=444;RATIO=1.52;BF=10.8	GT	./.
X	154113325	.	N	<DUP>	26.4	PASS	CN=5;SVTYPE=DUP;END=154113921;EXPECTED=267;OBSERVED=607;RATIO=2.27;BF=26.4	GT	./.
X	154114547	.	N	<DUP>	6.34	LOWBFSCORE	CN=3;SVTYPE=DUP;END=154116403;EXPECTED=184;OBSERVED=275;RATIO=1.49;BF=6.34	GT	./.