The following have been reloaded with a version change: 1) GCC/11.3.0 => GCC/12.2.0 2) GCCcore/11.3.0 => GCCcore/12.2.0 3) XZ/5.2.5-GCCcore-11.3.0 => XZ/5.2.7-GCCcore-12.2.0 4) binutils/2.38-GCCcore-11.3.0 => binutils/2.39-GCCcore-12.2.0 5) bzip2/1.0.8-GCCcore-11.3.0 => bzip2/1.0.8-GCCcore-12.2.0 6) ncurses/6.3-GCCcore-11.3.0 => ncurses/6.3-GCCcore-12.2.0 7) zlib/1.2.12-GCCcore-11.3.0 => zlib/1.2.12-GCCcore-12.2.0 The following have been reloaded with a version change: 1) GCC/12.2.0 => GCC/11.3.0 2) GCCcore/12.2.0 => GCCcore/11.3.0 3) binutils/2.39-GCCcore-12.2.0 => binutils/2.38-GCCcore-11.3.0 4) zlib/1.2.12-GCCcore-12.2.0 => zlib/1.2.12-GCCcore-11.3.0 The following have been reloaded with a version change: 1) FFTW/3.3.10-GCC-12.2.0 => FFTW/3.3.10-gompi-2021b 2) FlexiBLAS/3.2.1-GCC-12.2.0 => FlexiBLAS/3.0.4-GCC-11.2.0 3) GCC/11.3.0 => GCC/11.2.0 4) GCCcore/11.3.0 => GCCcore/11.2.0 5) GMP/6.2.1-GCCcore-12.2.0 => GMP/6.2.1-GCCcore-11.2.0 6) OpenBLAS/0.3.21-GCC-12.2.0 => OpenBLAS/0.3.18-GCC-11.2.0 7) OpenMPI/4.1.4-GCC-12.2.0 => OpenMPI/4.1.1-GCC-11.2.0 8) PMIx/4.2.2-GCCcore-12.2.0 => PMIx/4.1.0-GCCcore-11.2.0 9) Python/3.10.8-GCCcore-12.2.0 => Python/3.9.6-GCCcore-11.2.0 10) SQLite/3.39.4-GCCcore-12.2.0 => SQLite/3.36-GCCcore-11.2.0 11) ScaLAPACK/2.2.0-gompi-2022b-fb => ScaLAPACK/2.1.0-gompi-2021b-fb 12) SciPy-bundle/2023.02-gfbf-2022b => SciPy-bundle/2021.10-foss-2021b 13) Tcl/8.6.12-GCCcore-12.2.0 => Tcl/8.6.11-GCCcore-11.2.0 14) UCX/1.13.1-GCCcore-12.2.0 => UCX/1.11.2-GCCcore-11.2.0 15) XZ/5.2.7-GCCcore-12.2.0 => XZ/5.2.5-GCCcore-11.2.0 16) binutils/2.38-GCCcore-11.3.0 => binutils/2.37-GCCcore-11.2.0 17) bzip2/1.0.8-GCCcore-12.2.0 => bzip2/1.0.8-GCCcore-11.2.0 18) cURL/7.83.0-GCCcore-11.3.0 => cURL/7.78.0-GCCcore-11.2.0 19) foss/2022b => foss/2021b 20) gompi/2022b => gompi/2021b 21) hwloc/2.8.0-GCCcore-12.2.0 => hwloc/2.5.0-GCCcore-11.2.0 22) libevent/2.1.12-GCCcore-12.2.0 => libevent/2.1.12-GCCcore-11.2.0 23) libfabric/1.16.1-GCCcore-12.2.0 => libfabric/1.13.2-GCCcore-11.2.0 24) libffi/3.4.4-GCCcore-12.2.0 => libffi/3.4.2-GCCcore-11.2.0 25) libpciaccess/0.17-GCCcore-12.2.0 => libpciaccess/0.16-GCCcore-11.2.0 26) libreadline/8.2-GCCcore-12.2.0 => libreadline/8.1-GCCcore-11.2.0 27) libxml2/2.10.3-GCCcore-12.2.0 => libxml2/2.9.10-GCCcore-11.2.0 28) ncurses/6.3-GCCcore-12.2.0 => ncurses/6.2-GCCcore-11.2.0 29) numactl/2.0.16-GCCcore-12.2.0 => numactl/2.0.14-GCCcore-11.2.0 30) pybind11/2.10.3-GCCcore-12.2.0 => pybind11/2.7.1-GCCcore-11.2.0 31) zlib/1.2.12-GCCcore-11.3.0 => zlib/1.2.11-GCCcore-11.2.0 ========== featureCount: WM012_32 ====================================== ========== _____ _ _ ____ _____ ______ _____ ===== / ____| | | | _ \| __ \| ____| /\ | __ \ ===== | (___ | | | | |_) | |__) | |__ / \ | | | | ==== \___ \| | | | _ <| _ /| __| / /\ \ | | | | ==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| | ========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/ v2.0.4 //========================== featureCounts setting ===========================\\ || || || Input files : 1 BAM file || || || || WM012_32.sorted.bam || || || || Output file : WM012_32.1.counts || || Summary : WM012_32.1.counts.summary || || Paired-end : no || || Count read pairs : no || || Annotation : Bacillus_subtilis_subsp_subtilis_str_168_ASM ... || || Dir for temp files : /scratch/p127804/PROJECTS/Wilfried/202310_01 ... || || || || Threads : 1 || || Level : meta-feature level || || Multimapping reads : counted || || Multi-overlapping reads : not counted || || Min overlapping bases : 1 || || || \\============================================================================// //================================= Running ==================================\\ || || || Load annotation file Bacillus_subtilis_subsp_subtilis_str_168_ASM904v1 ... || || Features : 4530 || || Meta-features : 4530 || || Chromosomes/contigs : 2 || || || || Process BAM file WM012_32.sorted.bam... || || Strand specific : stranded || || Single-end reads are included. || || Total alignments : 5268460 || || Successfully assigned alignments : 2531651 (48.1%) || || Running time : 0.07 minutes || || || || Write the final count table. || || Write the read assignment summary. || || || || Summary of counting results can be found in file "/scratch/p127804/PROJEC || || TS/Wilfried/202310_012/results/WM012_32.1.counts.summary" || || || \\============================================================================// ========== _____ _ _ ____ _____ ______ _____ ===== / ____| | | | _ \| __ \| ____| /\ | __ \ ===== | (___ | | | | |_) | |__) | |__ / \ | | | | ==== \___ \| | | | _ <| _ /| __| / /\ \ | | | | ==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| | ========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/ v2.0.4 //========================== featureCounts setting ===========================\\ || || || Input files : 1 BAM file || || || || WM012_32.sorted.bam || || || || Output file : WM012_32.2.counts || || Summary : WM012_32.2.counts.summary || || Paired-end : no || || Count read pairs : no || || Annotation : Bacillus_subtilis_subsp_subtilis_str_168_ASM ... || || Dir for temp files : /scratch/p127804/PROJECTS/Wilfried/202310_01 ... || || || || Threads : 1 || || Level : meta-feature level || || Multimapping reads : counted || || Multi-overlapping reads : not counted || || Min overlapping bases : 1 || || || \\============================================================================// //================================= Running ==================================\\ || || || Load annotation file Bacillus_subtilis_subsp_subtilis_str_168_ASM904v1 ... || || Features : 4530 || || Meta-features : 4530 || || Chromosomes/contigs : 2 || || || || Process BAM file WM012_32.sorted.bam... || || Strand specific : reversely stranded || || Single-end reads are included. || || Total alignments : 5268460 || || Successfully assigned alignments : 2412657 (45.8%) || || Running time : 0.07 minutes || || || || Write the final count table. || || Write the read assignment summary. || || || || Summary of counting results can be found in file "/scratch/p127804/PROJEC || || TS/Wilfried/202310_012/results/WM012_32.2.counts.summary" || || || \\============================================================================// sed: can't read /scratch/p127804/PROJECTS/Wilfried/202310_012/results/WM012_32.counts: No such file or directory ========== featureCount: WM012_38 ====================================== ========== _____ _ _ ____ _____ ______ _____ ===== / ____| | | | _ \| __ \| ____| /\ | __ \ ===== | (___ | | | | |_) | |__) | |__ / \ | | | | ==== \___ \| | | | _ <| _ /| __| / /\ \ | | | | ==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| | ========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/ v2.0.4 //========================== featureCounts setting ===========================\\ || || || Input files : 1 BAM file || || || || WM012_38.sorted.bam || || || || Output file : WM012_38.1.counts || || Summary : WM012_38.1.counts.summary || || Paired-end : no || || Count read pairs : no || || Annotation : Bacillus_subtilis_subsp_subtilis_str_168_ASM ... || || Dir for temp files : /scratch/p127804/PROJECTS/Wilfried/202310_01 ... || || || || Threads : 1 || || Level : meta-feature level || || Multimapping reads : counted || || Multi-overlapping reads : not counted || || Min overlapping bases : 1 || || || \\============================================================================// //================================= Running ==================================\\ || || || Load annotation file Bacillus_subtilis_subsp_subtilis_str_168_ASM904v1 ... || || Features : 4530 || || Meta-features : 4530 || || Chromosomes/contigs : 2 || || || || Process BAM file WM012_38.sorted.bam... || || Strand specific : stranded || || Single-end reads are included. || || Total alignments : 6028004 || || Successfully assigned alignments : 2882237 (47.8%) || || Running time : 0.08 minutes || || || || Write the final count table. || || Write the read assignment summary. || || || || Summary of counting results can be found in file "/scratch/p127804/PROJEC || || TS/Wilfried/202310_012/results/WM012_38.1.counts.summary" || || || \\============================================================================// ========== _____ _ _ ____ _____ ______ _____ ===== / ____| | | | _ \| __ \| ____| /\ | __ \ ===== | (___ | | | | |_) | |__) | |__ / \ | | | | ==== \___ \| | | | _ <| _ /| __| / /\ \ | | | | ==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| | ========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/ v2.0.4 //========================== featureCounts setting ===========================\\ || || || Input files : 1 BAM file || || || || WM012_38.sorted.bam || || || || Output file : WM012_38.2.counts || || Summary : WM012_38.2.counts.summary || || Paired-end : no || || Count read pairs : no || || Annotation : Bacillus_subtilis_subsp_subtilis_str_168_ASM ... || || Dir for temp files : /scratch/p127804/PROJECTS/Wilfried/202310_01 ... || || || || Threads : 1 || || Level : meta-feature level || || Multimapping reads : counted || || Multi-overlapping reads : not counted || || Min overlapping bases : 1 || || || \\============================================================================// //================================= Running ==================================\\ || || || Load annotation file Bacillus_subtilis_subsp_subtilis_str_168_ASM904v1 ... || || Features : 4530 || || Meta-features : 4530 || || Chromosomes/contigs : 2 || || || || Process BAM file WM012_38.sorted.bam... || || Strand specific : reversely stranded || || Single-end reads are included. || || Total alignments : 6028004 || || Successfully assigned alignments : 2763420 (45.8%) || || Running time : 0.08 minutes || || || || Write the final count table. || || Write the read assignment summary. || || || || Summary of counting results can be found in file "/scratch/p127804/PROJEC || || TS/Wilfried/202310_012/results/WM012_38.2.counts.summary" || || || \\============================================================================// sed: can't read /scratch/p127804/PROJECTS/Wilfried/202310_012/results/WM012_38.counts: No such file or directory ========== featureCount: WM012_46 ====================================== ========== _____ _ _ ____ _____ ______ _____ ===== / ____| | | | _ \| __ \| ____| /\ | __ \ ===== | (___ | | | | |_) | |__) | |__ / \ | | | | ==== \___ \| | | | _ <| _ /| __| / /\ \ | | | | ==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| | ========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/ v2.0.4 //========================== featureCounts setting ===========================\\ || || || Input files : 1 BAM file || || || || WM012_46.sorted.bam || || || || Output file : WM012_46.1.counts || || Summary : WM012_46.1.counts.summary || || Paired-end : no || || Count read pairs : no || || Annotation : Bacillus_subtilis_subsp_subtilis_str_168_ASM ... || || Dir for temp files : /scratch/p127804/PROJECTS/Wilfried/202310_01 ... || || || || Threads : 1 || || Level : meta-feature level || || Multimapping reads : counted || || Multi-overlapping reads : not counted || || Min overlapping bases : 1 || || || \\============================================================================// //================================= Running ==================================\\ || || || Load annotation file Bacillus_subtilis_subsp_subtilis_str_168_ASM904v1 ... || || Features : 4530 || || Meta-features : 4530 || || Chromosomes/contigs : 2 || || || || Process BAM file WM012_46.sorted.bam... || || Strand specific : stranded || || Single-end reads are included. || || Total alignments : 5131253 || || Successfully assigned alignments : 2433623 (47.4%) || || Running time : 0.07 minutes || || || || Write the final count table. || || Write the read assignment summary. || || || || Summary of counting results can be found in file "/scratch/p127804/PROJEC || || TS/Wilfried/202310_012/results/WM012_46.1.counts.summary" || || || \\============================================================================// ========== _____ _ _ ____ _____ ______ _____ ===== / ____| | | | _ \| __ \| ____| /\ | __ \ ===== | (___ | | | | |_) | |__) | |__ / \ | | | | ==== \___ \| | | | _ <| _ /| __| / /\ \ | | | | ==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| | ========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/ v2.0.4 //========================== featureCounts setting ===========================\\ || || || Input files : 1 BAM file || || || || WM012_46.sorted.bam || || || || Output file : WM012_46.2.counts || || Summary : WM012_46.2.counts.summary || || Paired-end : no || || Count read pairs : no || || Annotation : Bacillus_subtilis_subsp_subtilis_str_168_ASM ... || || Dir for temp files : /scratch/p127804/PROJECTS/Wilfried/202310_01 ... || || || || Threads : 1 || || Level : meta-feature level || || Multimapping reads : counted || || Multi-overlapping reads : not counted || || Min overlapping bases : 1 || || || \\============================================================================// //================================= Running ==================================\\ || || || Load annotation file Bacillus_subtilis_subsp_subtilis_str_168_ASM904v1 ... || || Features : 4530 || || Meta-features : 4530 || || Chromosomes/contigs : 2 || || || || Process BAM file WM012_46.sorted.bam... || || Strand specific : reversely stranded || || Single-end reads are included. || || Total alignments : 5131253 || || Successfully assigned alignments : 2340709 (45.6%) || || Running time : 0.07 minutes || || || || Write the final count table. || || Write the read assignment summary. || || || || Summary of counting results can be found in file "/scratch/p127804/PROJEC || || TS/Wilfried/202310_012/results/WM012_46.2.counts.summary" || || || \\============================================================================// sed: can't read /scratch/p127804/PROJECTS/Wilfried/202310_012/results/WM012_46.counts: No such file or directory ========== featureCount: WM012_48 ====================================== ========== _____ _ _ ____ _____ ______ _____ ===== / ____| | | | _ \| __ \| ____| /\ | __ \ ===== | (___ | | | | |_) | |__) | |__ / \ | | | | ==== \___ \| | | | _ <| _ /| __| / /\ \ | | | | ==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| | ========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/ v2.0.4 //========================== featureCounts setting ===========================\\ || || || Input files : 1 BAM file || || || || WM012_48.sorted.bam || || || || Output file : WM012_48.1.counts || || Summary : WM012_48.1.counts.summary || || Paired-end : no || || Count read pairs : no || || Annotation : Bacillus_subtilis_subsp_subtilis_str_168_ASM ... || || Dir for temp files : /scratch/p127804/PROJECTS/Wilfried/202310_01 ... || || || || Threads : 1 || || Level : meta-feature level || || Multimapping reads : counted || || Multi-overlapping reads : not counted || || Min overlapping bases : 1 || || || \\============================================================================// //================================= Running ==================================\\ || || || Load annotation file Bacillus_subtilis_subsp_subtilis_str_168_ASM904v1 ... || || Features : 4530 || || Meta-features : 4530 || || Chromosomes/contigs : 2 || || || || Process BAM file WM012_48.sorted.bam... || || Strand specific : stranded || || Single-end reads are included. || || Total alignments : 6850795 || || Successfully assigned alignments : 3236319 (47.2%) || || Running time : 0.09 minutes || || || || Write the final count table. || || Write the read assignment summary. || || || || Summary of counting results can be found in file "/scratch/p127804/PROJEC || || TS/Wilfried/202310_012/results/WM012_48.1.counts.summary" || || || \\============================================================================// ========== _____ _ _ ____ _____ ______ _____ ===== / ____| | | | _ \| __ \| ____| /\ | __ \ ===== | (___ | | | | |_) | |__) | |__ / \ | | | | ==== \___ \| | | | _ <| _ /| __| / /\ \ | | | | ==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| | ========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/ v2.0.4 //========================== featureCounts setting ===========================\\ || || || Input files : 1 BAM file || || || || WM012_48.sorted.bam || || || || Output file : WM012_48.2.counts || || Summary : WM012_48.2.counts.summary || || Paired-end : no || || Count read pairs : no || || Annotation : Bacillus_subtilis_subsp_subtilis_str_168_ASM ... || || Dir for temp files : /scratch/p127804/PROJECTS/Wilfried/202310_01 ... || || || || Threads : 1 || || Level : meta-feature level || || Multimapping reads : counted || || Multi-overlapping reads : not counted || || Min overlapping bases : 1 || || || \\============================================================================// //================================= Running ==================================\\ || || || Load annotation file Bacillus_subtilis_subsp_subtilis_str_168_ASM904v1 ... || || Features : 4530 || || Meta-features : 4530 || || Chromosomes/contigs : 2 || || || || Process BAM file WM012_48.sorted.bam... || || Strand specific : reversely stranded || || Single-end reads are included. || || Total alignments : 6850795 || || Successfully assigned alignments : 3111109 (45.4%) || || Running time : 0.09 minutes || || || || Write the final count table. || || Write the read assignment summary. || || || || Summary of counting results can be found in file "/scratch/p127804/PROJEC || || TS/Wilfried/202310_012/results/WM012_48.2.counts.summary" || || || \\============================================================================// sed: can't read /scratch/p127804/PROJECTS/Wilfried/202310_012/results/WM012_48.counts: No such file or directory ========== featureCount: WM012_51 ====================================== ========== _____ _ _ ____ _____ ______ _____ ===== / ____| | | | _ \| __ \| ____| /\ | __ \ ===== | (___ | | | | |_) | |__) | |__ / \ | | | | ==== \___ \| | | | _ <| _ /| __| / /\ \ | | | | ==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| | ========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/ v2.0.4 //========================== featureCounts setting ===========================\\ || || || Input files : 1 BAM file || || || || WM012_51.sorted.bam || || || || Output file : WM012_51.1.counts || || Summary : WM012_51.1.counts.summary || || Paired-end : no || || Count read pairs : no || || Annotation : Bacillus_subtilis_subsp_subtilis_str_168_ASM ... || || Dir for temp files : /scratch/p127804/PROJECTS/Wilfried/202310_01 ... || || || || Threads : 1 || || Level : meta-feature level || || Multimapping reads : counted || || Multi-overlapping reads : not counted || || Min overlapping bases : 1 || || || \\============================================================================// //================================= Running ==================================\\ || || || Load annotation file Bacillus_subtilis_subsp_subtilis_str_168_ASM904v1 ... || || Features : 4530 || || Meta-features : 4530 || || Chromosomes/contigs : 2 || || || || Process BAM file WM012_51.sorted.bam... || || Strand specific : stranded || || Single-end reads are included. || || Total alignments : 7846223 || || Successfully assigned alignments : 3722289 (47.4%) || || Running time : 0.10 minutes || || || || Write the final count table. || || Write the read assignment summary. || || || || Summary of counting results can be found in file "/scratch/p127804/PROJEC || || TS/Wilfried/202310_012/results/WM012_51.1.counts.summary" || || || \\============================================================================// ========== _____ _ _ ____ _____ ______ _____ ===== / ____| | | | _ \| __ \| ____| /\ | __ \ ===== | (___ | | | | |_) | |__) | |__ / \ | | | | ==== \___ \| | | | _ <| _ /| __| / /\ \ | | | | ==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| | ========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/ v2.0.4 //========================== featureCounts setting ===========================\\ || || || Input files : 1 BAM file || || || || WM012_51.sorted.bam || || || || Output file : WM012_51.2.counts || || Summary : WM012_51.2.counts.summary || || Paired-end : no || || Count read pairs : no || || Annotation : Bacillus_subtilis_subsp_subtilis_str_168_ASM ... || || Dir for temp files : /scratch/p127804/PROJECTS/Wilfried/202310_01 ... || || || || Threads : 1 || || Level : meta-feature level || || Multimapping reads : counted || || Multi-overlapping reads : not counted || || Min overlapping bases : 1 || || || \\============================================================================// //================================= Running ==================================\\ || || || Load annotation file Bacillus_subtilis_subsp_subtilis_str_168_ASM904v1 ... || || Features : 4530 || || Meta-features : 4530 || || Chromosomes/contigs : 2 || || || || Process BAM file WM012_51.sorted.bam... || || Strand specific : reversely stranded || || Single-end reads are included. || || Total alignments : 7846223 || || Successfully assigned alignments : 3597330 (45.8%) || || Running time : 0.10 minutes || || || || Write the final count table. || || Write the read assignment summary. || || || || Summary of counting results can be found in file "/scratch/p127804/PROJEC || || TS/Wilfried/202310_012/results/WM012_51.2.counts.summary" || || || \\============================================================================// sed: can't read /scratch/p127804/PROJECTS/Wilfried/202310_012/results/WM012_51.counts: No such file or directory ========== featureCount: WM012_53 ====================================== ========== _____ _ _ ____ _____ ______ _____ ===== / ____| | | | _ \| __ \| ____| /\ | __ \ ===== | (___ | | | | |_) | |__) | |__ / \ | | | | ==== \___ \| | | | _ <| _ /| __| / /\ \ | | | | ==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| | ========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/ v2.0.4 //========================== featureCounts setting ===========================\\ || || || Input files : 1 BAM file || || || || WM012_53.sorted.bam || || || || Output file : WM012_53.1.counts || || Summary : WM012_53.1.counts.summary || || Paired-end : no || || Count read pairs : no || || Annotation : Bacillus_subtilis_subsp_subtilis_str_168_ASM ... || || Dir for temp files : /scratch/p127804/PROJECTS/Wilfried/202310_01 ... || || || || Threads : 1 || || Level : meta-feature level || || Multimapping reads : counted || || Multi-overlapping reads : not counted || || Min overlapping bases : 1 || || || \\============================================================================// //================================= Running ==================================\\ || || || Load annotation file Bacillus_subtilis_subsp_subtilis_str_168_ASM904v1 ... || || Features : 4530 || || Meta-features : 4530 || || Chromosomes/contigs : 2 || || || || Process BAM file WM012_53.sorted.bam... || || Strand specific : stranded || || Single-end reads are included. || || Total alignments : 6302841 || || Successfully assigned alignments : 3004135 (47.7%) || || Running time : 0.08 minutes || || || || Write the final count table. || || Write the read assignment summary. || || || || Summary of counting results can be found in file "/scratch/p127804/PROJEC || || TS/Wilfried/202310_012/results/WM012_53.1.counts.summary" || || || \\============================================================================// ========== _____ _ _ ____ _____ ______ _____ ===== / ____| | | | _ \| __ \| ____| /\ | __ \ ===== | (___ | | | | |_) | |__) | |__ / \ | | | | ==== \___ \| | | | _ <| _ /| __| / /\ \ | | | | ==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| | ========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/ v2.0.4 //========================== featureCounts setting ===========================\\ || || || Input files : 1 BAM file || || || || WM012_53.sorted.bam || || || || Output file : WM012_53.2.counts || || Summary : WM012_53.2.counts.summary || || Paired-end : no || || Count read pairs : no || || Annotation : Bacillus_subtilis_subsp_subtilis_str_168_ASM ... || || Dir for temp files : /scratch/p127804/PROJECTS/Wilfried/202310_01 ... || || || || Threads : 1 || || Level : meta-feature level || || Multimapping reads : counted || || Multi-overlapping reads : not counted || || Min overlapping bases : 1 || || || \\============================================================================// //================================= Running ==================================\\ || || || Load annotation file Bacillus_subtilis_subsp_subtilis_str_168_ASM904v1 ... || || Features : 4530 || || Meta-features : 4530 || || Chromosomes/contigs : 2 || || || || Process BAM file WM012_53.sorted.bam... || || Strand specific : reversely stranded || || Single-end reads are included. || || Total alignments : 6302841 || || Successfully assigned alignments : 2877021 (45.6%) || || Running time : 0.08 minutes || || || || Write the final count table. || || Write the read assignment summary. || || || || Summary of counting results can be found in file "/scratch/p127804/PROJEC || || TS/Wilfried/202310_012/results/WM012_53.2.counts.summary" || || || \\============================================================================// sed: can't read /scratch/p127804/PROJECTS/Wilfried/202310_012/results/WM012_53.counts: No such file or directory ========== featureCount: WM012_63 ====================================== ========== _____ _ _ ____ _____ ______ _____ ===== / ____| | | | _ \| __ \| ____| /\ | __ \ ===== | (___ | | | | |_) | |__) | |__ / \ | | | | ==== \___ \| | | | _ <| _ /| __| / /\ \ | | | | ==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| | ========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/ v2.0.4 //========================== featureCounts setting ===========================\\ || || || Input files : 1 BAM file || || || || WM012_63.sorted.bam || || || || Output file : WM012_63.1.counts || || Summary : WM012_63.1.counts.summary || || Paired-end : no || || Count read pairs : no || || Annotation : Bacillus_subtilis_subsp_subtilis_str_168_ASM ... || || Dir for temp files : /scratch/p127804/PROJECTS/Wilfried/202310_01 ... || || || || Threads : 1 || || Level : meta-feature level || || Multimapping reads : counted || || Multi-overlapping reads : not counted || || Min overlapping bases : 1 || || || \\============================================================================// //================================= Running ==================================\\ || || || Load annotation file Bacillus_subtilis_subsp_subtilis_str_168_ASM904v1 ... || || Features : 4530 || || Meta-features : 4530 || || Chromosomes/contigs : 2 || || || || Process BAM file WM012_63.sorted.bam... || || Strand specific : stranded || || Single-end reads are included. || || Total alignments : 7082891 || || Successfully assigned alignments : 3372395 (47.6%) || || Running time : 0.09 minutes || || || || Write the final count table. || || Write the read assignment summary. || || || || Summary of counting results can be found in file "/scratch/p127804/PROJEC || || TS/Wilfried/202310_012/results/WM012_63.1.counts.summary" || || || \\============================================================================// ========== _____ _ _ ____ _____ ______ _____ ===== / ____| | | | _ \| __ \| ____| /\ | __ \ ===== | (___ | | | | |_) | |__) | |__ / \ | | | | ==== \___ \| | | | _ <| _ /| __| / /\ \ | | | | ==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| | ========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/ v2.0.4 //========================== featureCounts setting ===========================\\ || || || Input files : 1 BAM file || || || || WM012_63.sorted.bam || || || || Output file : WM012_63.2.counts || || Summary : WM012_63.2.counts.summary || || Paired-end : no || || Count read pairs : no || || Annotation : Bacillus_subtilis_subsp_subtilis_str_168_ASM ... || || Dir for temp files : /scratch/p127804/PROJECTS/Wilfried/202310_01 ... || || || || Threads : 1 || || Level : meta-feature level || || Multimapping reads : counted || || Multi-overlapping reads : not counted || || Min overlapping bases : 1 || || || \\============================================================================// //================================= Running ==================================\\ || || || Load annotation file Bacillus_subtilis_subsp_subtilis_str_168_ASM904v1 ... || || Features : 4530 || || Meta-features : 4530 || || Chromosomes/contigs : 2 || || || || Process BAM file WM012_63.sorted.bam... || || Strand specific : reversely stranded || || Single-end reads are included. || || Total alignments : 7082891 || || Successfully assigned alignments : 3264050 (46.1%) || || Running time : 0.09 minutes || || || || Write the final count table. || || Write the read assignment summary. || || || || Summary of counting results can be found in file "/scratch/p127804/PROJEC || || TS/Wilfried/202310_012/results/WM012_63.2.counts.summary" || || || \\============================================================================// sed: can't read /scratch/p127804/PROJECTS/Wilfried/202310_012/results/WM012_63.counts: No such file or directory ========== featureCount: WM012_64 ====================================== ========== _____ _ _ ____ _____ ______ _____ ===== / ____| | | | _ \| __ \| ____| /\ | __ \ ===== | (___ | | | | |_) | |__) | |__ / \ | | | | ==== \___ \| | | | _ <| _ /| __| / /\ \ | | | | ==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| | ========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/ v2.0.4 //========================== featureCounts setting ===========================\\ || || || Input files : 1 BAM file || || || || WM012_64.sorted.bam || || || || Output file : WM012_64.1.counts || || Summary : WM012_64.1.counts.summary || || Paired-end : no || || Count read pairs : no || || Annotation : Bacillus_subtilis_subsp_subtilis_str_168_ASM ... || || Dir for temp files : /scratch/p127804/PROJECTS/Wilfried/202310_01 ... || || || || Threads : 1 || || Level : meta-feature level || || Multimapping reads : counted || || Multi-overlapping reads : not counted || || Min overlapping bases : 1 || || || \\============================================================================// //================================= Running ==================================\\ || || || Load annotation file Bacillus_subtilis_subsp_subtilis_str_168_ASM904v1 ... || || Features : 4530 || || Meta-features : 4530 || || Chromosomes/contigs : 2 || || || || Process BAM file WM012_64.sorted.bam... || || Strand specific : stranded || || Single-end reads are included. || || Total alignments : 5858284 || || Successfully assigned alignments : 2816218 (48.1%) || || Running time : 0.08 minutes || || || || Write the final count table. || || Write the read assignment summary. || || || || Summary of counting results can be found in file "/scratch/p127804/PROJEC || || TS/Wilfried/202310_012/results/WM012_64.1.counts.summary" || || || \\============================================================================// ========== _____ _ _ ____ _____ ______ _____ ===== / ____| | | | _ \| __ \| ____| /\ | __ \ ===== | (___ | | | | |_) | |__) | |__ / \ | | | | ==== \___ \| | | | _ <| _ /| __| / /\ \ | | | | ==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| | ========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/ v2.0.4 //========================== featureCounts setting ===========================\\ || || || Input files : 1 BAM file || || || || WM012_64.sorted.bam || || || || Output file : WM012_64.2.counts || || Summary : WM012_64.2.counts.summary || || Paired-end : no || || Count read pairs : no || || Annotation : Bacillus_subtilis_subsp_subtilis_str_168_ASM ... || || Dir for temp files : /scratch/p127804/PROJECTS/Wilfried/202310_01 ... || || || || Threads : 1 || || Level : meta-feature level || || Multimapping reads : counted || || Multi-overlapping reads : not counted || || Min overlapping bases : 1 || || || \\============================================================================// //================================= Running ==================================\\ || || || Load annotation file Bacillus_subtilis_subsp_subtilis_str_168_ASM904v1 ... || || Features : 4530 || || Meta-features : 4530 || || Chromosomes/contigs : 2 || || || || Process BAM file WM012_64.sorted.bam... || || Strand specific : reversely stranded || || Single-end reads are included. || || Total alignments : 5858284 || || Successfully assigned alignments : 2692285 (46.0%) || || Running time : 0.08 minutes || || || || Write the final count table. || || Write the read assignment summary. || || || || Summary of counting results can be found in file "/scratch/p127804/PROJEC || || TS/Wilfried/202310_012/results/WM012_64.2.counts.summary" || || || \\============================================================================// sed: can't read /scratch/p127804/PROJECTS/Wilfried/202310_012/results/WM012_64.counts: No such file or directory ========== featureCount: WM012_65 ====================================== ========== _____ _ _ ____ _____ ______ _____ ===== / ____| | | | _ \| __ \| ____| /\ | __ \ ===== | (___ | | | | |_) | |__) | |__ / \ | | | | ==== \___ \| | | | _ <| _ /| __| / /\ \ | | | | ==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| | ========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/ v2.0.4 //========================== featureCounts setting ===========================\\ || || || Input files : 1 BAM file || || || || WM012_65.sorted.bam || || || || Output file : WM012_65.1.counts || || Summary : WM012_65.1.counts.summary || || Paired-end : no || || Count read pairs : no || || Annotation : Bacillus_subtilis_subsp_subtilis_str_168_ASM ... || || Dir for temp files : /scratch/p127804/PROJECTS/Wilfried/202310_01 ... || || || || Threads : 1 || || Level : meta-feature level || || Multimapping reads : counted || || Multi-overlapping reads : not counted || || Min overlapping bases : 1 || || || \\============================================================================// //================================= Running ==================================\\ || || || Load annotation file Bacillus_subtilis_subsp_subtilis_str_168_ASM904v1 ... || || Features : 4530 || || Meta-features : 4530 || || Chromosomes/contigs : 2 || || || || Process BAM file WM012_65.sorted.bam... || || Strand specific : stranded || || Single-end reads are included. || || Total alignments : 2351305 || || Successfully assigned alignments : 1120266 (47.6%) || || Running time : 0.03 minutes || || || || Write the final count table. || || Write the read assignment summary. || || || || Summary of counting results can be found in file "/scratch/p127804/PROJEC || || TS/Wilfried/202310_012/results/WM012_65.1.counts.summary" || || || \\============================================================================// ========== _____ _ _ ____ _____ ______ _____ ===== / ____| | | | _ \| __ \| ____| /\ | __ \ ===== | (___ | | | | |_) | |__) | |__ / \ | | | | ==== \___ \| | | | _ <| _ /| __| / /\ \ | | | | ==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| | ========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/ v2.0.4 //========================== featureCounts setting ===========================\\ || || || Input files : 1 BAM file || || || || WM012_65.sorted.bam || || || || Output file : WM012_65.2.counts || || Summary : WM012_65.2.counts.summary || || Paired-end : no || || Count read pairs : no || || Annotation : Bacillus_subtilis_subsp_subtilis_str_168_ASM ... || || Dir for temp files : /scratch/p127804/PROJECTS/Wilfried/202310_01 ... || || || || Threads : 1 || || Level : meta-feature level || || Multimapping reads : counted || || Multi-overlapping reads : not counted || || Min overlapping bases : 1 || || || \\============================================================================// //================================= Running ==================================\\ || || || Load annotation file Bacillus_subtilis_subsp_subtilis_str_168_ASM904v1 ... || || Features : 4530 || || Meta-features : 4530 || || Chromosomes/contigs : 2 || || || || Process BAM file WM012_65.sorted.bam... || || Strand specific : reversely stranded || || Single-end reads are included. || || Total alignments : 2351305 || || Successfully assigned alignments : 1061522 (45.1%) || || Running time : 0.03 minutes || || || || Write the final count table. || || Write the read assignment summary. || || || || Summary of counting results can be found in file "/scratch/p127804/PROJEC || || TS/Wilfried/202310_012/results/WM012_65.2.counts.summary" || || || \\============================================================================// sed: can't read /scratch/p127804/PROJECTS/Wilfried/202310_012/results/WM012_65.counts: No such file or directory ========== featureCount: WM012_66 ====================================== ========== _____ _ _ ____ _____ ______ _____ ===== / ____| | | | _ \| __ \| ____| /\ | __ \ ===== | (___ | | | | |_) | |__) | |__ / \ | | | | ==== \___ \| | | | _ <| _ /| __| / /\ \ | | | | ==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| | ========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/ v2.0.4 //========================== featureCounts setting ===========================\\ || || || Input files : 1 BAM file || || || || WM012_66.sorted.bam || || || || Output file : WM012_66.1.counts || || Summary : WM012_66.1.counts.summary || || Paired-end : no || || Count read pairs : no || || Annotation : Bacillus_subtilis_subsp_subtilis_str_168_ASM ... || || Dir for temp files : /scratch/p127804/PROJECTS/Wilfried/202310_01 ... || || || || Threads : 1 || || Level : meta-feature level || || Multimapping reads : counted || || Multi-overlapping reads : not counted || || Min overlapping bases : 1 || || || \\============================================================================// //================================= Running ==================================\\ || || || Load annotation file Bacillus_subtilis_subsp_subtilis_str_168_ASM904v1 ... || || Features : 4530 || || Meta-features : 4530 || || Chromosomes/contigs : 2 || || || || Process BAM file WM012_66.sorted.bam... || || Strand specific : stranded || || Single-end reads are included. || || Total alignments : 6366917 || || Successfully assigned alignments : 3042569 (47.8%) || || Running time : 0.08 minutes || || || || Write the final count table. || || Write the read assignment summary. || || || || Summary of counting results can be found in file "/scratch/p127804/PROJEC || || TS/Wilfried/202310_012/results/WM012_66.1.counts.summary" || || || \\============================================================================// ========== _____ _ _ ____ _____ ______ _____ ===== / ____| | | | _ \| __ \| ____| /\ | __ \ ===== | (___ | | | | |_) | |__) | |__ / \ | | | | ==== \___ \| | | | _ <| _ /| __| / /\ \ | | | | ==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| | ========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/ v2.0.4 //========================== featureCounts setting ===========================\\ || || || Input files : 1 BAM file || || || || WM012_66.sorted.bam || || || || Output file : WM012_66.2.counts || || Summary : WM012_66.2.counts.summary || || Paired-end : no || || Count read pairs : no || || Annotation : Bacillus_subtilis_subsp_subtilis_str_168_ASM ... || || Dir for temp files : /scratch/p127804/PROJECTS/Wilfried/202310_01 ... || || || || Threads : 1 || || Level : meta-feature level || || Multimapping reads : counted || || Multi-overlapping reads : not counted || || Min overlapping bases : 1 || || || \\============================================================================// //================================= Running ==================================\\ || || || Load annotation file Bacillus_subtilis_subsp_subtilis_str_168_ASM904v1 ... || || Features : 4530 || || Meta-features : 4530 || || Chromosomes/contigs : 2 || || || || Process BAM file WM012_66.sorted.bam... || || Strand specific : reversely stranded || || Single-end reads are included. || || Total alignments : 6366917 || || Successfully assigned alignments : 2917380 (45.8%) || || Running time : 0.08 minutes || || || || Write the final count table. || || Write the read assignment summary. || || || || Summary of counting results can be found in file "/scratch/p127804/PROJEC || || TS/Wilfried/202310_012/results/WM012_66.2.counts.summary" || || || \\============================================================================// sed: can't read /scratch/p127804/PROJECTS/Wilfried/202310_012/results/WM012_66.counts: No such file or directory ========== featureCount: WM012_67 ====================================== ========== _____ _ _ ____ _____ ______ _____ ===== / ____| | | | _ \| __ \| ____| /\ | __ \ ===== | (___ | | | | |_) | |__) | |__ / \ | | | | ==== \___ \| | | | _ <| _ /| __| / /\ \ | | | | ==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| | ========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/ v2.0.4 //========================== featureCounts setting ===========================\\ || || || Input files : 1 BAM file || || || || WM012_67.sorted.bam || || || || Output file : WM012_67.1.counts || || Summary : WM012_67.1.counts.summary || || Paired-end : no || || Count read pairs : no || || Annotation : Bacillus_subtilis_subsp_subtilis_str_168_ASM ... || || Dir for temp files : /scratch/p127804/PROJECTS/Wilfried/202310_01 ... || || || || Threads : 1 || || Level : meta-feature level || || Multimapping reads : counted || || Multi-overlapping reads : not counted || || Min overlapping bases : 1 || || || \\============================================================================// //================================= Running ==================================\\ || || || Load annotation file Bacillus_subtilis_subsp_subtilis_str_168_ASM904v1 ... || || Features : 4530 || || Meta-features : 4530 || || Chromosomes/contigs : 2 || || || || Process BAM file WM012_67.sorted.bam... || || Strand specific : stranded || || Single-end reads are included. || || Total alignments : 6113537 || || Successfully assigned alignments : 2905972 (47.5%) || || Running time : 0.08 minutes || || || || Write the final count table. || || Write the read assignment summary. || || || || Summary of counting results can be found in file "/scratch/p127804/PROJEC || || TS/Wilfried/202310_012/results/WM012_67.1.counts.summary" || || || \\============================================================================// ========== _____ _ _ ____ _____ ______ _____ ===== / ____| | | | _ \| __ \| ____| /\ | __ \ ===== | (___ | | | | |_) | |__) | |__ / \ | | | | ==== \___ \| | | | _ <| _ /| __| / /\ \ | | | | ==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| | ========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/ v2.0.4 //========================== featureCounts setting ===========================\\ || || || Input files : 1 BAM file || || || || WM012_67.sorted.bam || || || || Output file : WM012_67.2.counts || || Summary : WM012_67.2.counts.summary || || Paired-end : no || || Count read pairs : no || || Annotation : Bacillus_subtilis_subsp_subtilis_str_168_ASM ... || || Dir for temp files : /scratch/p127804/PROJECTS/Wilfried/202310_01 ... || || || || Threads : 1 || || Level : meta-feature level || || Multimapping reads : counted || || Multi-overlapping reads : not counted || || Min overlapping bases : 1 || || || \\============================================================================// //================================= Running ==================================\\ || || || Load annotation file Bacillus_subtilis_subsp_subtilis_str_168_ASM904v1 ... || || Features : 4530 || || Meta-features : 4530 || || Chromosomes/contigs : 2 || || || || Process BAM file WM012_67.sorted.bam... || || Strand specific : reversely stranded || || Single-end reads are included. || || Total alignments : 6113537 || || Successfully assigned alignments : 2805949 (45.9%) || || Running time : 0.08 minutes || || || || Write the final count table. || || Write the read assignment summary. || || || || Summary of counting results can be found in file "/scratch/p127804/PROJEC || || TS/Wilfried/202310_012/results/WM012_67.2.counts.summary" || || || \\============================================================================// sed: can't read /scratch/p127804/PROJECTS/Wilfried/202310_012/results/WM012_67.counts: No such file or directory ========== featureCount: WM012_68 ====================================== ========== _____ _ _ ____ _____ ______ _____ ===== / ____| | | | _ \| __ \| ____| /\ | __ \ ===== | (___ | | | | |_) | |__) | |__ / \ | | | | ==== \___ \| | | | _ <| _ /| __| / /\ \ | | | | ==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| | ========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/ v2.0.4 //========================== featureCounts setting ===========================\\ || || || Input files : 1 BAM file || || || || WM012_68.sorted.bam || || || || Output file : WM012_68.1.counts || || Summary : WM012_68.1.counts.summary || || Paired-end : no || || Count read pairs : no || || Annotation : Bacillus_subtilis_subsp_subtilis_str_168_ASM ... || || Dir for temp files : /scratch/p127804/PROJECTS/Wilfried/202310_01 ... || || || || Threads : 1 || || Level : meta-feature level || || Multimapping reads : counted || || Multi-overlapping reads : not counted || || Min overlapping bases : 1 || || || \\============================================================================// //================================= Running ==================================\\ || || || Load annotation file Bacillus_subtilis_subsp_subtilis_str_168_ASM904v1 ... || || Features : 4530 || || Meta-features : 4530 || || Chromosomes/contigs : 2 || || || || Process BAM file WM012_68.sorted.bam... || || Strand specific : stranded || || Single-end reads are included. || || Total alignments : 7295190 || || Successfully assigned alignments : 3477791 (47.7%) || || Running time : 0.10 minutes || || || || Write the final count table. || || Write the read assignment summary. || || || || Summary of counting results can be found in file "/scratch/p127804/PROJEC || || TS/Wilfried/202310_012/results/WM012_68.1.counts.summary" || || || \\============================================================================// ========== _____ _ _ ____ _____ ______ _____ ===== / ____| | | | _ \| __ \| ____| /\ | __ \ ===== | (___ | | | | |_) | |__) | |__ / \ | | | | ==== \___ \| | | | _ <| _ /| __| / /\ \ | | | | ==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| | ========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/ v2.0.4 //========================== featureCounts setting ===========================\\ || || || Input files : 1 BAM file || || || || WM012_68.sorted.bam || || || || Output file : WM012_68.2.counts || || Summary : WM012_68.2.counts.summary || || Paired-end : no || || Count read pairs : no || || Annotation : Bacillus_subtilis_subsp_subtilis_str_168_ASM ... || || Dir for temp files : /scratch/p127804/PROJECTS/Wilfried/202310_01 ... || || || || Threads : 1 || || Level : meta-feature level || || Multimapping reads : counted || || Multi-overlapping reads : not counted || || Min overlapping bases : 1 || || || \\============================================================================// //================================= Running ==================================\\ || || || Load annotation file Bacillus_subtilis_subsp_subtilis_str_168_ASM904v1 ... || || Features : 4530 || || Meta-features : 4530 || || Chromosomes/contigs : 2 || || || || Process BAM file WM012_68.sorted.bam... || || Strand specific : reversely stranded || || Single-end reads are included. || || Total alignments : 7295190 || || Successfully assigned alignments : 3345724 (45.9%) || || Running time : 0.09 minutes || || || || Write the final count table. || || Write the read assignment summary. || || || || Summary of counting results can be found in file "/scratch/p127804/PROJEC || || TS/Wilfried/202310_012/results/WM012_68.2.counts.summary" || || || \\============================================================================// sed: can't read /scratch/p127804/PROJECTS/Wilfried/202310_012/results/WM012_68.counts: No such file or directory ========== featureCount: WM012_69 ====================================== ========== _____ _ _ ____ _____ ______ _____ ===== / ____| | | | _ \| __ \| ____| /\ | __ \ ===== | (___ | | | | |_) | |__) | |__ / \ | | | | ==== \___ \| | | | _ <| _ /| __| / /\ \ | | | | ==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| | ========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/ v2.0.4 //========================== featureCounts setting ===========================\\ || || || Input files : 1 BAM file || || || || WM012_69.sorted.bam || || || || Output file : WM012_69.1.counts || || Summary : WM012_69.1.counts.summary || || Paired-end : no || || Count read pairs : no || || Annotation : Bacillus_subtilis_subsp_subtilis_str_168_ASM ... || || Dir for temp files : /scratch/p127804/PROJECTS/Wilfried/202310_01 ... || || || || Threads : 1 || || Level : meta-feature level || || Multimapping reads : counted || || Multi-overlapping reads : not counted || || Min overlapping bases : 1 || || || \\============================================================================// //================================= Running ==================================\\ || || || Load annotation file Bacillus_subtilis_subsp_subtilis_str_168_ASM904v1 ... || || Features : 4530 || || Meta-features : 4530 || || Chromosomes/contigs : 2 || || || || Process BAM file WM012_69.sorted.bam... || || Strand specific : stranded || || Single-end reads are included. || || Total alignments : 6745048 || || Successfully assigned alignments : 3217357 (47.7%) || || Running time : 0.09 minutes || || || || Write the final count table. || || Write the read assignment summary. || || || || Summary of counting results can be found in file "/scratch/p127804/PROJEC || || TS/Wilfried/202310_012/results/WM012_69.1.counts.summary" || || || \\============================================================================// ========== _____ _ _ ____ _____ ______ _____ ===== / ____| | | | _ \| __ \| ____| /\ | __ \ ===== | (___ | | | | |_) | |__) | |__ / \ | | | | ==== \___ \| | | | _ <| _ /| __| / /\ \ | | | | ==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| | ========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/ v2.0.4 //========================== featureCounts setting ===========================\\ || || || Input files : 1 BAM file || || || || WM012_69.sorted.bam || || || || Output file : WM012_69.2.counts || || Summary : WM012_69.2.counts.summary || || Paired-end : no || || Count read pairs : no || || Annotation : Bacillus_subtilis_subsp_subtilis_str_168_ASM ... || || Dir for temp files : /scratch/p127804/PROJECTS/Wilfried/202310_01 ... || || || || Threads : 1 || || Level : meta-feature level || || Multimapping reads : counted || || Multi-overlapping reads : not counted || || Min overlapping bases : 1 || || || \\============================================================================// //================================= Running ==================================\\ || || || Load annotation file Bacillus_subtilis_subsp_subtilis_str_168_ASM904v1 ... || || Features : 4530 || || Meta-features : 4530 || || Chromosomes/contigs : 2 || || || || Process BAM file WM012_69.sorted.bam... || || Strand specific : reversely stranded || || Single-end reads are included. || || Total alignments : 6745048 || || Successfully assigned alignments : 3089532 (45.8%) || || Running time : 0.09 minutes || || || || Write the final count table. || || Write the read assignment summary. || || || || Summary of counting results can be found in file "/scratch/p127804/PROJEC || || TS/Wilfried/202310_012/results/WM012_69.2.counts.summary" || || || \\============================================================================// sed: can't read /scratch/p127804/PROJECTS/Wilfried/202310_012/results/WM012_69.counts: No such file or directory ========== featureCount: WM012_70 ====================================== ========== _____ _ _ ____ _____ ______ _____ ===== / ____| | | | _ \| __ \| ____| /\ | __ \ ===== | (___ | | | | |_) | |__) | |__ / \ | | | | ==== \___ \| | | | _ <| _ /| __| / /\ \ | | | | ==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| | ========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/ v2.0.4 //========================== featureCounts setting ===========================\\ || || || Input files : 1 BAM file || || || || WM012_70.sorted.bam || || || || Output file : WM012_70.1.counts || || Summary : WM012_70.1.counts.summary || || Paired-end : no || || Count read pairs : no || || Annotation : Bacillus_subtilis_subsp_subtilis_str_168_ASM ... || || Dir for temp files : /scratch/p127804/PROJECTS/Wilfried/202310_01 ... || || || || Threads : 1 || || Level : meta-feature level || || Multimapping reads : counted || || Multi-overlapping reads : not counted || || Min overlapping bases : 1 || || || \\============================================================================// //================================= Running ==================================\\ || || || Load annotation file Bacillus_subtilis_subsp_subtilis_str_168_ASM904v1 ... || || Features : 4530 || || Meta-features : 4530 || || Chromosomes/contigs : 2 || || || || Process BAM file WM012_70.sorted.bam... || || Strand specific : stranded || || Single-end reads are included. || || Total alignments : 6356343 || || Successfully assigned alignments : 3027444 (47.6%) || || Running time : 0.08 minutes || || || || Write the final count table. || || Write the read assignment summary. || || || || Summary of counting results can be found in file "/scratch/p127804/PROJEC || || TS/Wilfried/202310_012/results/WM012_70.1.counts.summary" || || || \\============================================================================// ========== _____ _ _ ____ _____ ______ _____ ===== / ____| | | | _ \| __ \| ____| /\ | __ \ ===== | (___ | | | | |_) | |__) | |__ / \ | | | | ==== \___ \| | | | _ <| _ /| __| / /\ \ | | | | ==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| | ========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/ v2.0.4 //========================== featureCounts setting ===========================\\ || || || Input files : 1 BAM file || || || || WM012_70.sorted.bam || || || || Output file : WM012_70.2.counts || || Summary : WM012_70.2.counts.summary || || Paired-end : no || || Count read pairs : no || || Annotation : Bacillus_subtilis_subsp_subtilis_str_168_ASM ... || || Dir for temp files : /scratch/p127804/PROJECTS/Wilfried/202310_01 ... || || || || Threads : 1 || || Level : meta-feature level || || Multimapping reads : counted || || Multi-overlapping reads : not counted || || Min overlapping bases : 1 || || || \\============================================================================// //================================= Running ==================================\\ || || || Load annotation file Bacillus_subtilis_subsp_subtilis_str_168_ASM904v1 ... || || Features : 4530 || || Meta-features : 4530 || || Chromosomes/contigs : 2 || || || || Process BAM file WM012_70.sorted.bam... || || Strand specific : reversely stranded || || Single-end reads are included. || || Total alignments : 6356343 || || Successfully assigned alignments : 2897416 (45.6%) || || Running time : 0.08 minutes || || || || Write the final count table. || || Write the read assignment summary. || || || || Summary of counting results can be found in file "/scratch/p127804/PROJEC || || TS/Wilfried/202310_012/results/WM012_70.2.counts.summary" || || || \\============================================================================// sed: can't read /scratch/p127804/PROJECTS/Wilfried/202310_012/results/WM012_70.counts: No such file or directory ========== featureCount: WM012_71 ====================================== ========== _____ _ _ ____ _____ ______ _____ ===== / ____| | | | _ \| __ \| ____| /\ | __ \ ===== | (___ | | | | |_) | |__) | |__ / \ | | | | ==== \___ \| | | | _ <| _ /| __| / /\ \ | | | | ==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| | ========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/ v2.0.4 //========================== featureCounts setting ===========================\\ || || || Input files : 1 BAM file || || || || WM012_71.sorted.bam || || || || Output file : WM012_71.1.counts || || Summary : WM012_71.1.counts.summary || || Paired-end : no || || Count read pairs : no || || Annotation : Bacillus_subtilis_subsp_subtilis_str_168_ASM ... || || Dir for temp files : /scratch/p127804/PROJECTS/Wilfried/202310_01 ... || || || || Threads : 1 || || Level : meta-feature level || || Multimapping reads : counted || || Multi-overlapping reads : not counted || || Min overlapping bases : 1 || || || \\============================================================================// //================================= Running ==================================\\ || || || Load annotation file Bacillus_subtilis_subsp_subtilis_str_168_ASM904v1 ... || || Features : 4530 || || Meta-features : 4530 || || Chromosomes/contigs : 2 || || || || Process BAM file WM012_71.sorted.bam... || || Strand specific : stranded || || Single-end reads are included. || || Total alignments : 6525174 || || Successfully assigned alignments : 3099582 (47.5%) || || Running time : 0.08 minutes || || || || Write the final count table. || || Write the read assignment summary. || || || || Summary of counting results can be found in file "/scratch/p127804/PROJEC || || TS/Wilfried/202310_012/results/WM012_71.1.counts.summary" || || || \\============================================================================// ========== _____ _ _ ____ _____ ______ _____ ===== / ____| | | | _ \| __ \| ____| /\ | __ \ ===== | (___ | | | | |_) | |__) | |__ / \ | | | | ==== \___ \| | | | _ <| _ /| __| / /\ \ | | | | ==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| | ========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/ v2.0.4 //========================== featureCounts setting ===========================\\ || || || Input files : 1 BAM file || || || || WM012_71.sorted.bam || || || || Output file : WM012_71.2.counts || || Summary : WM012_71.2.counts.summary || || Paired-end : no || || Count read pairs : no || || Annotation : Bacillus_subtilis_subsp_subtilis_str_168_ASM ... || || Dir for temp files : /scratch/p127804/PROJECTS/Wilfried/202310_01 ... || || || || Threads : 1 || || Level : meta-feature level || || Multimapping reads : counted || || Multi-overlapping reads : not counted || || Min overlapping bases : 1 || || || \\============================================================================// //================================= Running ==================================\\ || || || Load annotation file Bacillus_subtilis_subsp_subtilis_str_168_ASM904v1 ... || || Features : 4530 || || Meta-features : 4530 || || Chromosomes/contigs : 2 || || || || Process BAM file WM012_71.sorted.bam... || || Strand specific : reversely stranded || || Single-end reads are included. || || Total alignments : 6525174 || || Successfully assigned alignments : 2974421 (45.6%) || || Running time : 0.08 minutes || || || || Write the final count table. || || Write the read assignment summary. || || || || Summary of counting results can be found in file "/scratch/p127804/PROJEC || || TS/Wilfried/202310_012/results/WM012_71.2.counts.summary" || || || \\============================================================================// sed: can't read /scratch/p127804/PROJECTS/Wilfried/202310_012/results/WM012_71.counts: No such file or directory ========== featureCount: WM012_72 ====================================== ========== _____ _ _ ____ _____ ______ _____ ===== / ____| | | | _ \| __ \| ____| /\ | __ \ ===== | (___ | | | | |_) | |__) | |__ / \ | | | | ==== \___ \| | | | _ <| _ /| __| / /\ \ | | | | ==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| | ========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/ v2.0.4 //========================== featureCounts setting ===========================\\ || || || Input files : 1 BAM file || || || || WM012_72.sorted.bam || || || || Output file : WM012_72.1.counts || || Summary : WM012_72.1.counts.summary || || Paired-end : no || || Count read pairs : no || || Annotation : Bacillus_subtilis_subsp_subtilis_str_168_ASM ... || || Dir for temp files : /scratch/p127804/PROJECTS/Wilfried/202310_01 ... || || || || Threads : 1 || || Level : meta-feature level || || Multimapping reads : counted || || Multi-overlapping reads : not counted || || Min overlapping bases : 1 || || || \\============================================================================// //================================= Running ==================================\\ || || || Load annotation file Bacillus_subtilis_subsp_subtilis_str_168_ASM904v1 ... || || Features : 4530 || || Meta-features : 4530 || || Chromosomes/contigs : 2 || || || || Process BAM file WM012_72.sorted.bam... || || Strand specific : stranded || || Single-end reads are included. || || Total alignments : 5304221 || || Successfully assigned alignments : 2515826 (47.4%) || || Running time : 0.07 minutes || || || || Write the final count table. || || Write the read assignment summary. || || || || Summary of counting results can be found in file "/scratch/p127804/PROJEC || || TS/Wilfried/202310_012/results/WM012_72.1.counts.summary" || || || \\============================================================================// ========== _____ _ _ ____ _____ ______ _____ ===== / ____| | | | _ \| __ \| ____| /\ | __ \ ===== | (___ | | | | |_) | |__) | |__ / \ | | | | ==== \___ \| | | | _ <| _ /| __| / /\ \ | | | | ==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| | ========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/ v2.0.4 //========================== featureCounts setting ===========================\\ || || || Input files : 1 BAM file || || || || WM012_72.sorted.bam || || || || Output file : WM012_72.2.counts || || Summary : WM012_72.2.counts.summary || || Paired-end : no || || Count read pairs : no || || Annotation : Bacillus_subtilis_subsp_subtilis_str_168_ASM ... || || Dir for temp files : /scratch/p127804/PROJECTS/Wilfried/202310_01 ... || || || || Threads : 1 || || Level : meta-feature level || || Multimapping reads : counted || || Multi-overlapping reads : not counted || || Min overlapping bases : 1 || || || \\============================================================================// //================================= Running ==================================\\ || || || Load annotation file Bacillus_subtilis_subsp_subtilis_str_168_ASM904v1 ... || || Features : 4530 || || Meta-features : 4530 || || Chromosomes/contigs : 2 || || || || Process BAM file WM012_72.sorted.bam... || || Strand specific : reversely stranded || || Single-end reads are included. || || Total alignments : 5304221 || || Successfully assigned alignments : 2413045 (45.5%) || || Running time : 0.07 minutes || || || || Write the final count table. || || Write the read assignment summary. || || || || Summary of counting results can be found in file "/scratch/p127804/PROJEC || || TS/Wilfried/202310_012/results/WM012_72.2.counts.summary" || || || \\============================================================================// sed: can't read /scratch/p127804/PROJECTS/Wilfried/202310_012/results/WM012_72.counts: No such file or directory WM012_32.1.counts WM012_38.1.counts WM012_46.1.counts WM012_48.1.counts WM012_51.1.counts WM012_53.1.counts WM012_63.1.counts WM012_64.1.counts WM012_65.1.counts WM012_66.1.counts WM012_67.1.counts WM012_68.1.counts WM012_69.1.counts WM012_70.1.counts WM012_71.1.counts WM012_72.1.counts WM012_32.2.counts WM012_38.2.counts WM012_46.2.counts WM012_48.2.counts WM012_51.2.counts WM012_53.2.counts WM012_63.2.counts WM012_64.2.counts WM012_65.2.counts WM012_66.2.counts WM012_67.2.counts WM012_68.2.counts WM012_69.2.counts WM012_70.2.counts WM012_71.2.counts WM012_72.2.counts WM012_32.1.rpkm WM012_38.1.rpkm WM012_46.1.rpkm WM012_48.1.rpkm WM012_51.1.rpkm WM012_53.1.rpkm WM012_63.1.rpkm WM012_64.1.rpkm WM012_65.1.rpkm WM012_66.1.rpkm WM012_67.1.rpkm WM012_68.1.rpkm WM012_69.1.rpkm WM012_70.1.rpkm WM012_71.1.rpkm WM012_72.1.rpkm WM012_32.2.rpkm WM012_38.2.rpkm WM012_46.2.rpkm WM012_48.2.rpkm WM012_51.2.rpkm WM012_53.2.rpkm WM012_63.2.rpkm WM012_64.2.rpkm WM012_65.2.rpkm WM012_66.2.rpkm WM012_67.2.rpkm WM012_68.2.rpkm WM012_69.2.rpkm WM012_70.2.rpkm WM012_71.2.rpkm WM012_72.2.rpkm /home1/p127804/AnneTools/Add_CV.py:30: RuntimeWarning: invalid value encountered in double_scalars cv = lambda x: np.std(x, ddof=1) / np.mean(x) * 100 RangeIndex: 4530 entries, 0 to 4529 Data columns (total 17 columns): # Column Non-Null Count Dtype --- ------ -------------- ----- 0 key 4530 non-null object 1 WM012_32.1.counts 4530 non-null int64 2 WM012_38.1.counts 4530 non-null int64 3 WM012_46.1.counts 4530 non-null int64 4 WM012_48.1.counts 4530 non-null int64 5 WM012_51.1.counts 4530 non-null int64 6 WM012_53.1.counts 4530 non-null int64 7 WM012_63.1.counts 4530 non-null int64 8 WM012_64.1.counts 4530 non-null int64 9 WM012_65.1.counts 4530 non-null int64 10 WM012_66.1.counts 4530 non-null int64 11 WM012_67.1.counts 4530 non-null int64 12 WM012_68.1.counts 4530 non-null int64 13 WM012_69.1.counts 4530 non-null int64 14 WM012_70.1.counts 4530 non-null int64 15 WM012_71.1.counts 4530 non-null int64 16 WM012_72.1.counts 4530 non-null int64 dtypes: int64(16), object(1) memory usage: 601.8+ KB /home1/p127804/AnneTools/Add_CV.py:30: RuntimeWarning: invalid value encountered in double_scalars cv = lambda x: np.std(x, ddof=1) / np.mean(x) * 100 RangeIndex: 4530 entries, 0 to 4529 Data columns (total 17 columns): # Column Non-Null Count Dtype --- ------ -------------- ----- 0 key 4530 non-null object 1 WM012_32.2.counts 4530 non-null int64 2 WM012_38.2.counts 4530 non-null int64 3 WM012_46.2.counts 4530 non-null int64 4 WM012_48.2.counts 4530 non-null int64 5 WM012_51.2.counts 4530 non-null int64 6 WM012_53.2.counts 4530 non-null int64 7 WM012_63.2.counts 4530 non-null int64 8 WM012_64.2.counts 4530 non-null int64 9 WM012_65.2.counts 4530 non-null int64 10 WM012_66.2.counts 4530 non-null int64 11 WM012_67.2.counts 4530 non-null int64 12 WM012_68.2.counts 4530 non-null int64 13 WM012_69.2.counts 4530 non-null int64 14 WM012_70.2.counts 4530 non-null int64 15 WM012_71.2.counts 4530 non-null int64 16 WM012_72.2.counts 4530 non-null int64 dtypes: int64(16), object(1) memory usage: 601.8+ KB /home1/p127804/AnneTools/Add_CV.py:30: RuntimeWarning: invalid value encountered in double_scalars cv = lambda x: np.std(x, ddof=1) / np.mean(x) * 100 RangeIndex: 4530 entries, 0 to 4529 Data columns (total 17 columns): # Column Non-Null Count Dtype --- ------ -------------- ----- 0 key 4530 non-null object 1 WM012_32.1.rpkm 4530 non-null float64 2 WM012_38.1.rpkm 4530 non-null float64 3 WM012_46.1.rpkm 4530 non-null float64 4 WM012_48.1.rpkm 4530 non-null float64 5 WM012_51.1.rpkm 4530 non-null float64 6 WM012_53.1.rpkm 4530 non-null float64 7 WM012_63.1.rpkm 4530 non-null float64 8 WM012_64.1.rpkm 4530 non-null float64 9 WM012_65.1.rpkm 4530 non-null float64 10 WM012_66.1.rpkm 4530 non-null float64 11 WM012_67.1.rpkm 4530 non-null float64 12 WM012_68.1.rpkm 4530 non-null float64 13 WM012_69.1.rpkm 4530 non-null float64 14 WM012_70.1.rpkm 4530 non-null float64 15 WM012_71.1.rpkm 4530 non-null float64 16 WM012_72.1.rpkm 4530 non-null float64 dtypes: float64(16), object(1) memory usage: 601.8+ KB /home1/p127804/AnneTools/Add_CV.py:30: RuntimeWarning: invalid value encountered in double_scalars cv = lambda x: np.std(x, ddof=1) / np.mean(x) * 100 RangeIndex: 4530 entries, 0 to 4529 Data columns (total 17 columns): # Column Non-Null Count Dtype --- ------ -------------- ----- 0 key 4530 non-null object 1 WM012_32.2.rpkm 4530 non-null float64 2 WM012_38.2.rpkm 4530 non-null float64 3 WM012_46.2.rpkm 4530 non-null float64 4 WM012_48.2.rpkm 4530 non-null float64 5 WM012_51.2.rpkm 4530 non-null float64 6 WM012_53.2.rpkm 4530 non-null float64 7 WM012_63.2.rpkm 4530 non-null float64 8 WM012_64.2.rpkm 4530 non-null float64 9 WM012_65.2.rpkm 4530 non-null float64 10 WM012_66.2.rpkm 4530 non-null float64 11 WM012_67.2.rpkm 4530 non-null float64 12 WM012_68.2.rpkm 4530 non-null float64 13 WM012_69.2.rpkm 4530 non-null float64 14 WM012_70.2.rpkm 4530 non-null float64 15 WM012_71.2.rpkm 4530 non-null float64 16 WM012_72.2.rpkm 4530 non-null float64 dtypes: float64(16), object(1) memory usage: 601.8+ KB ############################################################################### Hábrók Cluster Job 5774653 for user p127804 Finished at: Wed Oct 25 19:22:59 CEST 2023 Job details: ============ Job ID : 5774653 Name : featureCounts User : p127804 Partition : regularmedium Nodes : node11 Number of Nodes : 1 Cores : 16 Number of Tasks : 1 State : COMPLETED Submit : 2023-10-25T19:20:00 Start : 2023-10-25T19:20:00 End : 2023-10-25T19:22:59 Reserved walltime : 1-00:00:00 Used walltime : 00:02:59 Used CPU time : 00:02:50 (efficiency: 5.94%) % User (Computation): 95.51% % System (I/O) : 4.49% Mem reserved : 8G Max Mem (Node/step) : 19.11M (node11, per node) Full Max Mem usage : 19.11M Total Disk Read : 6.03G Total Disk Write : 12.57M Acknowledgements: ================= Please see this page for information about acknowledging Hábrók in your publications: https://wiki.hpc.rug.nl/habrok/introduction/scientific_output ################################################################################