#=GENOME_DIFF	1.0
#=TITLE	D61
#=CREATED	15:50:26 03 Mar 2017
#=PROGRAM	breseq 0.29.0 
#=COMMAND	breseq -j 2 -r /var/genomes/g2d_mirror/Staphylococcus_aureus_subsp_aureus_USA300_FPR3757/ASM1346v1_genomic.gbff -n D61 -o /var/www/ngs/solomon/breseq/D61 --no-junction-prediction /var/ngs/rnaseq/raw/solomon/RNAseq_USA300_Eleni/OtA1614_D61B0.5_R1_.fastq
#=REFSEQ	/var/genomes/g2d_mirror/Staphylococcus_aureus_subsp_aureus_USA300_FPR3757/ASM1346v1_genomic.gbff
#=READSEQ	/var/ngs/rnaseq/raw/solomon/RNAseq_USA300_Eleni/OtA1614_D61B0.5_R1_.fastq
#=CONVERTED-BASES	521864100
#=CONVERTED-READS	5218641
#=INPUT-BASES	521868600
#=INPUT-READS	5218686
#=MAPPED-BASES	329606861
#=MAPPED-READS	3327524
DEL	1	6	NC_007790	1	3125
DEL	2	7	NC_007791	1	4439
DEL	3	9	NC_007792	1916	22120	between=repeat_region
DEL	4	11	NC_007793	1	2872769
RA	5	.	NC_007792	1817	0	C	G	bias_e_value=12788.4	bias_p_value=0.00438337	consensus_score=218.1	fisher_strand_p_value=0.000597372	frequency=7.026e-01	ks_quality_p_value=0.855288	major_base=G	major_cov=17/120	major_frequency=7.026e-01	minor_base=C	minor_cov=20/38	new_cov=17/120	polymorphism_frequency=7.026e-01	polymorphism_score=166.5	prediction=polymorphism	ref_cov=20/38	total_cov=37/158
MC	6	.	NC_007790	1	3125	0	0	left_inside_cov=0	left_outside_cov=NA	right_inside_cov=0	right_outside_cov=NA
MC	7	.	NC_007791	1	4439	0	0	left_inside_cov=0	left_outside_cov=NA	right_inside_cov=0	right_outside_cov=NA
MC	8	.	NC_007792	1	1268	0	142	left_inside_cov=0	left_outside_cov=NA	right_inside_cov=14	right_outside_cov=15
MC	9	.	NC_007792	1913	23248	0	0	left_inside_cov=2	left_outside_cov=81	right_inside_cov=14	right_outside_cov=17
MC	10	.	NC_007792	23352	37136	362	0	left_inside_cov=13	left_outside_cov=15	right_inside_cov=0	right_outside_cov=NA
MC	11	.	NC_007793	1	2872769	0	0	left_inside_cov=0	left_outside_cov=NA	right_inside_cov=0	right_outside_cov=NA
UN	12	.	NC_007792	1	1261
UN	13	.	NC_007792	1263	1263
UN	14	.	NC_007792	1912	23246
UN	15	.	NC_007792	23353	37136