breseq  version 0.29.0  
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence seq id position mutation annotation gene description
MC NC_007790 1 Δ3,125 bp SAUSA300_RS14705–SAUSA300_RS14715 SAUSA300_RS14705, SAUSA300_RS14710, SAUSA300_RS14715
MC NC_007791 1 Δ4,439 bp SAUSA300_RS14725–SAUSA300_RS14735 SAUSA300_RS14725, SAUSA300_RS14730, SAUSA300_RS14735
MC NC_007792 1,916 Δ22,120 bp between repeat_region SAUSA300_RS14750–SAUSA300_RS14855 22 genes
MC NC_007793 1 Δ2,872,769 bp ssrA–SAUSA300_RS14700 2937 genes

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ NC_007792 1 1663 1663 NA [0] [0] 1 SAUSA300_RS14740–[SAUSA300_RS14745] SAUSA300_RS14740, [SAUSA300_RS14745]
* * ÷ NC_007792 1801 1806 6 1 [0] [0] 1 SAUSA300_RS14745 integrase
* * ÷ NC_007792 23974–24008 37136 13129–13163 3 [0] [0] NA SAUSA300_RS14860–SAUSA300_RS14925 SAUSA300_RS14860, SAUSA300_RS14865, SAUSA300_RS14870, SAUSA300_RS14875, SAUSA300_RS14880, SAUSA300_RS14885, SAUSA300_RS14890, SAUSA300_RS14895, SAUSA300_RS14900, SAUSA300_RS14905, SAUSA300_RS14910, SAUSA300_RS14915, SAUSA300_RS14920, SAUSA300_RS14925