#=GENOME_DIFF	1.0
#=TITLE	D29
#=CREATED	15:56:47 03 Mar 2017
#=PROGRAM	breseq 0.29.0 
#=COMMAND	breseq -j 2 -r /var/genomes/g2d_mirror/Staphylococcus_aureus_subsp_aureus_USA300_FPR3757/ASM1346v1_genomic.gbff -n D29 -o /var/www/ngs/solomon/breseq/D29 --no-junction-prediction /var/ngs/rnaseq/raw/solomon/RNAseq_USA300_Eleni/OtA1592_D29A0.5_R1_.fastq
#=REFSEQ	/var/genomes/g2d_mirror/Staphylococcus_aureus_subsp_aureus_USA300_FPR3757/ASM1346v1_genomic.gbff
#=READSEQ	/var/ngs/rnaseq/raw/solomon/RNAseq_USA300_Eleni/OtA1592_D29A0.5_R1_.fastq
#=CONVERTED-BASES	850479600
#=CONVERTED-READS	8504796
#=INPUT-BASES	850502700
#=INPUT-READS	8505027
#=MAPPED-BASES	570917558
#=MAPPED-READS	5756745
DEL	1	5	NC_007790	1	3125
DEL	2	6	NC_007791	1	4439
DEL	3	7	NC_007792	1	37136
DEL	4	8	NC_007793	1	2872769
MC	5	.	NC_007790	1	3125	0	0	left_inside_cov=0	left_outside_cov=NA	right_inside_cov=0	right_outside_cov=NA
MC	6	.	NC_007791	1	4439	0	0	left_inside_cov=0	left_outside_cov=NA	right_inside_cov=0	right_outside_cov=NA
MC	7	.	NC_007792	1	37136	0	0	left_inside_cov=0	left_outside_cov=NA	right_inside_cov=0	right_outside_cov=NA
MC	8	.	NC_007793	1	2872769	0	0	left_inside_cov=0	left_outside_cov=NA	right_inside_cov=0	right_outside_cov=NA