Sample	Reads	unpaired	%not aligned	%aligned 1x	%aligned >1x	overall aligned
D17A	7930515	100.00	1.39	59.96	38.65	98.61
D17B	8298290	100.00	1.91	57.50	40.59	98.09
D17C	7340072	100.00	1.25	59.14	39.61	98.75
D17_CIPA	5391429	100.00	1.50	60.95	37.55	98.50
D17_CIPB	6083532	100.00	1.52	54.14	44.34	98.48
D17_CIPC	6578079	100.00	1.51	53.39	45.09	98.49
D3A	7363685	100.00	1.71	64.59	33.70	98.29
D3B	7087899	100.00	1.55	64.05	34.40	98.45
D3C	7324631	100.00	1.43	61.17	37.40	98.57
D3_CIPA_	6144460	100.00	1.47	62.95	35.59	98.53
D3_CIPB_	6216054	100.00	1.48	60.88	37.64	98.52
D3_CIPC_	7922766	100.00	1.34	57.09	41.56	98.66

Sample	Reads	unpaired	%not aligned	%aligned 1x	%aligned >1x	overall aligned	mRNA Reads
D17A	7930515	100	1.39	59.96	38.65	98.61	4,755,137
D17B	8298290	100	1.91	57.5	40.59	98.09	4,771,517
D17C	7340072	100	1.25	59.14	39.61	98.75	4,340,919
D17_CIPA	5391429	100	1.5	60.95	37.55	98.5	3,286,076
D17_CIPB	6083532	100	1.52	54.14	44.34	98.48	3,293,624
D17_CIPC	6578079	100	1.51	53.39	45.09	98.49	3,512,036
D3A	7363685	100	1.71	64.59	33.7	98.29	4,756,204
D3B	7087899	100	1.55	64.05	34.4	98.45	4,539,799
D3C	7324631	100	1.43	61.17	37.4	98.57	4,480,477
D3_CIPA_	6144460	100	1.47	62.95	35.59	98.53	3,867,938
D3_CIPB_	6216054	100	1.48	60.88	37.64	98.52	3,784,334
D3_CIPC_	7922766	100	1.34	57.09	41.56	98.66	4,523,107