========= Bowtie2: D17A =================================
7930515 reads; of these:
  7930515 (100.00%) were unpaired; of these:
    110227 (1.39%) aligned 0 times
    4755455 (59.96%) aligned exactly 1 time
    3064833 (38.65%) aligned >1 times
98.61% overall alignment rate


========= Bowtie2: D17B =================================
8298290 reads; of these:
  8298290 (100.00%) were unpaired; of these:
    158434 (1.91%) aligned 0 times
    4771631 (57.50%) aligned exactly 1 time
    3368225 (40.59%) aligned >1 times
98.09% overall alignment rate


========= Bowtie2: D17C =================================
7340072 reads; of these:
  7340072 (100.00%) were unpaired; of these:
    91602 (1.25%) aligned 0 times
    4341179 (59.14%) aligned exactly 1 time
    2907291 (39.61%) aligned >1 times
98.75% overall alignment rate


========= Bowtie2: D17_CIPA =================================
5391429 reads; of these:
  5391429 (100.00%) were unpaired; of these:
    80873 (1.50%) aligned 0 times
    3285854 (60.95%) aligned exactly 1 time
    2024702 (37.55%) aligned >1 times
98.50% overall alignment rate


========= Bowtie2: D17_CIPB =================================
6083532 reads; of these:
  6083532 (100.00%) were unpaired; of these:
    92475 (1.52%) aligned 0 times
    3293515 (54.14%) aligned exactly 1 time
    2697542 (44.34%) aligned >1 times
98.48% overall alignment rate


========= Bowtie2: D17_CIPC =================================
6578079 reads; of these:
  6578079 (100.00%) were unpaired; of these:
    99528 (1.51%) aligned 0 times
    3512246 (53.39%) aligned exactly 1 time
    2966305 (45.09%) aligned >1 times
98.49% overall alignment rate


========= Bowtie2: D3A =================================
7363685 reads; of these:
  7363685 (100.00%) were unpaired; of these:
    125941 (1.71%) aligned 0 times
    4756319 (64.59%) aligned exactly 1 time
    2481425 (33.70%) aligned >1 times
98.29% overall alignment rate


========= Bowtie2: D3B =================================
7087899 reads; of these:
  7087899 (100.00%) were unpaired; of these:
    109537 (1.55%) aligned 0 times
    4540059 (64.05%) aligned exactly 1 time
    2438303 (34.40%) aligned >1 times
98.45% overall alignment rate


========= Bowtie2: D3C =================================
7324631 reads; of these:
  7324631 (100.00%) were unpaired; of these:
    104590 (1.43%) aligned 0 times
    4480597 (61.17%) aligned exactly 1 time
    2739444 (37.40%) aligned >1 times
98.57% overall alignment rate


========= Bowtie2: D3_CIPA_ =================================
6144460 reads; of these:
  6144460 (100.00%) were unpaired; of these:
    90225 (1.47%) aligned 0 times
    3867659 (62.95%) aligned exactly 1 time
    2186576 (35.59%) aligned >1 times
98.53% overall alignment rate


========= Bowtie2: D3_CIPB_ =================================
6216054 reads; of these:
  6216054 (100.00%) were unpaired; of these:
    92301 (1.48%) aligned 0 times
    3784285 (60.88%) aligned exactly 1 time
    2339468 (37.64%) aligned >1 times
98.52% overall alignment rate


========= Bowtie2: D3_CIPC_ =================================
7922766 reads; of these:
  7922766 (100.00%) were unpaired; of these:
    106480 (1.34%) aligned 0 times
    4523225 (57.09%) aligned exactly 1 time
    3293061 (41.56%) aligned >1 times
98.66% overall alignment rate