locus-tag class description AFMDGAFA_00001 PF00308 Bacterial dnaA protein AFMDGAFA_00001 PF08299 Bacterial dnaA protein helix-turn-helix AFMDGAFA_00001 PF11638 DnaA N-terminal domain AFMDGAFA_00002 PF00712 DNA polymerase III beta subunit, N-terminal domain AFMDGAFA_00002 PF02767 DNA polymerase III beta subunit, central domain AFMDGAFA_00002 PF02768 DNA polymerase III beta subunit, C-terminal domain AFMDGAFA_00003 PF02463 RecF/RecN/SMC N terminal domain AFMDGAFA_00004 PF00204 DNA gyrase B AFMDGAFA_00004 PF00986 DNA gyrase B subunit, carboxyl terminus AFMDGAFA_00004 PF18053 DNA gyrase B subunit insert domain AFMDGAFA_00004 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFMDGAFA_00004 PF01751 Toprim domain AFMDGAFA_00006 PF09335 SNARE associated Golgi protein AFMDGAFA_00007 PF12848 ABC transporter AFMDGAFA_00007 PF00005 ABC transporter AFMDGAFA_00008 PF19582 Solute-binding protein AdeT 1/2 AFMDGAFA_00009 PF19582 Solute-binding protein AdeT 1/2 AFMDGAFA_00010 PF19582 Solute-binding protein AdeT 1/2 AFMDGAFA_00011 PF01521 Iron-sulphur cluster biosynthesis AFMDGAFA_00012 PF00561 alpha/beta hydrolase fold AFMDGAFA_00013 PF03702 Anhydro-N-acetylmuramic acid kinase AFMDGAFA_00014 PF00579 tRNA synthetases class I (W and Y) AFMDGAFA_00022 PF00209 Sodium:neurotransmitter symporter family AFMDGAFA_00024 PF01189 16S rRNA methyltransferase RsmB/F AFMDGAFA_00024 PF01029 NusB family AFMDGAFA_00025 PF00551 Formyl transferase AFMDGAFA_00025 PF02911 Formyl transferase, C-terminal domain AFMDGAFA_00026 PF00920 Dehydratase family AFMDGAFA_00029 PF03466 LysR substrate binding domain AFMDGAFA_00029 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFMDGAFA_00030 PF00860 Permease family AFMDGAFA_00031 PF00311 Phosphoenolpyruvate carboxylase AFMDGAFA_00032 PF08361 MAATS-type transcriptional repressor, C-terminal region AFMDGAFA_00032 PF00440 Bacterial regulatory proteins, tetR family AFMDGAFA_00033 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AFMDGAFA_00034 PF00873 AcrB/AcrD/AcrF family AFMDGAFA_00036 PF00226 DnaJ domain AFMDGAFA_00036 PF01556 DnaJ C terminal domain AFMDGAFA_00036 PF00684 DnaJ central domain AFMDGAFA_00038 PF01113 Dihydrodipicolinate reductase, N-terminus AFMDGAFA_00038 PF05173 Dihydrodipicolinate reductase, C-terminus AFMDGAFA_00040 PF07690 Major Facilitator Superfamily AFMDGAFA_00041 PF00248 Aldo/keto reductase family AFMDGAFA_00042 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFMDGAFA_00042 PF03466 LysR substrate binding domain AFMDGAFA_00044 PF00155 Aminotransferase class I and II AFMDGAFA_00044 PF00392 Bacterial regulatory proteins, gntR family AFMDGAFA_00045 PF08240 Alcohol dehydrogenase GroES-like domain AFMDGAFA_00045 PF00107 Zinc-binding dehydrogenase AFMDGAFA_00046 PF03352 Methyladenine glycosylase AFMDGAFA_00049 PF10576 Iron-sulfur binding domain of endonuclease III AFMDGAFA_00049 PF14815 NUDIX domain AFMDGAFA_00049 PF00730 HhH-GPD superfamily base excision DNA repair protein AFMDGAFA_00049 PF00633 Helix-hairpin-helix motif AFMDGAFA_00052 PF07043 Protein of unknown function (DUF1328) AFMDGAFA_00053 PF03692 Putative zinc- or iron-chelating domain AFMDGAFA_00054 PF07995 Glucose / Sorbosone dehydrogenase AFMDGAFA_00055 PF00004 ATPase family associated with various cellular activities (AAA) AFMDGAFA_00055 PF16193 AAA C-terminal domain AFMDGAFA_00055 PF12002 MgsA AAA+ ATPase C terminal AFMDGAFA_00056 PF01226 Formate/nitrite transporter AFMDGAFA_00058 PF01259 SAICAR synthetase AFMDGAFA_00060 PF00701 Dihydrodipicolinate synthetase family AFMDGAFA_00061 PF00857 Isochorismatase family AFMDGAFA_00062 PF01758 Sodium Bile acid symporter family AFMDGAFA_00063 PF01554 MatE AFMDGAFA_00064 PF04463 2-thiouracil desulfurase AFMDGAFA_00065 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFMDGAFA_00067 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFMDGAFA_00068 PF02798 Glutathione S-transferase, N-terminal domain AFMDGAFA_00068 PF14497 Glutathione S-transferase, C-terminal domain AFMDGAFA_00069 PF01557 Fumarylacetoacetate (FAA) hydrolase family AFMDGAFA_00070 PF00324 Amino acid permease AFMDGAFA_00072 PF07683 Cobalamin synthesis protein cobW C-terminal domain AFMDGAFA_00072 PF02492 CobW/HypB/UreG, nucleotide-binding domain AFMDGAFA_00074 PF00392 Bacterial regulatory proteins, gntR family AFMDGAFA_00074 PF07702 UTRA domain AFMDGAFA_00075 PF05962 HutD AFMDGAFA_00076 PF17392 Urocanase C-terminal domain AFMDGAFA_00076 PF01175 Urocanase Rossmann-like domain AFMDGAFA_00076 PF17391 Urocanase N-terminal domain AFMDGAFA_00077 PF00221 Aromatic amino acid lyase AFMDGAFA_00078 PF00324 Amino acid permease AFMDGAFA_00079 PF01979 Amidohydrolase family AFMDGAFA_00080 PF00491 Arginase family AFMDGAFA_00083 PF01177 Asp/Glu/Hydantoin racemase AFMDGAFA_00084 PF01810 LysE type translocator AFMDGAFA_00088 PF01380 SIS domain AFMDGAFA_00089 PF00132 Bacterial transferase hexapeptide (six repeats) AFMDGAFA_00089 PF14602 Hexapeptide repeat of succinyl-transferase AFMDGAFA_00089 PF12804 MobA-like NTP transferase domain AFMDGAFA_00090 PF04608 Phosphatidylglycerophosphatase A AFMDGAFA_00091 PF02769 AIR synthase related protein, C-terminal domain AFMDGAFA_00091 PF00586 AIR synthase related protein, N-terminal domain AFMDGAFA_00092 PF01029 NusB family AFMDGAFA_00093 PF00885 6,7-dimethyl-8-ribityllumazine synthase AFMDGAFA_00094 PF00925 GTP cyclohydrolase II AFMDGAFA_00094 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AFMDGAFA_00099 PF02580 D-Tyr-tRNA(Tyr) deacylase AFMDGAFA_00100 PF00199 Catalase AFMDGAFA_00100 PF06628 Catalase-related immune-responsive AFMDGAFA_00102 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain AFMDGAFA_00102 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AFMDGAFA_00103 PF00581 Rhodanese-like domain AFMDGAFA_00104 PF02666 Phosphatidylserine decarboxylase AFMDGAFA_00106 PF00989 PAS fold AFMDGAFA_00106 PF11808 Phosphate regulon sensor protein PhoR AFMDGAFA_00106 PF00512 His Kinase A (phospho-acceptor) domain AFMDGAFA_00106 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFMDGAFA_00107 PF00072 Response regulator receiver domain AFMDGAFA_00107 PF00486 Transcriptional regulatory protein, C terminal AFMDGAFA_00109 PF00106 short chain dehydrogenase AFMDGAFA_00110 PF01554 MatE AFMDGAFA_00111 PF00155 Aminotransferase class I and II AFMDGAFA_00112 PF04286 Protein of unknown function (DUF445) AFMDGAFA_00115 PF04262 Glutamate-cysteine ligase AFMDGAFA_00116 PF02600 Disulfide bond formation protein DsbB AFMDGAFA_00117 PF04717 Type VI secretion system/phage-baseplate injector OB domain AFMDGAFA_00117 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) AFMDGAFA_00117 PF13296 Putative type VI secretion system Rhs element Vgr AFMDGAFA_00118 PF01476 LysM domain AFMDGAFA_00118 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AFMDGAFA_00125 PF05728 Uncharacterised protein family (UPF0227) AFMDGAFA_00126 PF01751 Toprim domain AFMDGAFA_00126 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFMDGAFA_00126 PF00986 DNA gyrase B subunit, carboxyl terminus AFMDGAFA_00126 PF00204 DNA gyrase B AFMDGAFA_00127 PF04115 Ureidoglycolate lyase AFMDGAFA_00128 PF03561 Allantoicase repeat AFMDGAFA_00129 PF01494 FAD binding domain AFMDGAFA_00131 PF00860 Permease family AFMDGAFA_00132 PF00576 HIUase/Transthyretin family AFMDGAFA_00138 PF11412 Disulphide bond corrector protein DsbC AFMDGAFA_00138 PF02683 Cytochrome C biogenesis protein transmembrane region AFMDGAFA_00139 PF07694 5TMR of 5TMR-LYT AFMDGAFA_00139 PF00990 Diguanylate cyclase, GGDEF domain AFMDGAFA_00140 PF07859 alpha/beta hydrolase fold AFMDGAFA_00142 PF03960 ArsC family AFMDGAFA_00143 PF03372 Endonuclease/Exonuclease/phosphatase family AFMDGAFA_00144 PF00156 Phosphoribosyl transferase domain AFMDGAFA_00146 PF00593 TonB dependent receptor AFMDGAFA_00146 PF07715 TonB-dependent Receptor Plug Domain AFMDGAFA_00148 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AFMDGAFA_00148 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AFMDGAFA_00149 PF03033 Glycosyltransferase family 28 N-terminal domain AFMDGAFA_00149 PF04101 Glycosyltransferase family 28 C-terminal domain AFMDGAFA_00150 PF08245 Mur ligase middle domain AFMDGAFA_00150 PF01225 Mur ligase family, catalytic domain AFMDGAFA_00150 PF02875 Mur ligase family, glutamate ligase domain AFMDGAFA_00151 PF01820 D-ala D-ala ligase N-terminus AFMDGAFA_00151 PF07478 D-ala D-ala ligase C-terminus AFMDGAFA_00152 PF08478 POTRA domain, FtsQ-type AFMDGAFA_00152 PF03799 Cell division protein FtsQ/DivIB, C-terminal AFMDGAFA_00153 PF02491 SHS2 domain inserted in FTSA AFMDGAFA_00154 PF12327 FtsZ family, C-terminal domain AFMDGAFA_00154 PF00091 Tubulin/FtsZ family, GTPase domain AFMDGAFA_00155 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AFMDGAFA_00157 PF01551 Peptidase family M23 AFMDGAFA_00158 PF00456 Transketolase, thiamine diphosphate binding domain AFMDGAFA_00158 PF17831 Pyruvate dehydrogenase E1 component middle domain AFMDGAFA_00159 PF02817 e3 binding domain AFMDGAFA_00159 PF00364 Biotin-requiring enzyme AFMDGAFA_00159 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AFMDGAFA_00162 PF01169 Uncharacterized protein family UPF0016 AFMDGAFA_00163 PF00593 TonB dependent receptor AFMDGAFA_00163 PF07715 TonB-dependent Receptor Plug Domain AFMDGAFA_00164 PF00258 Flavodoxin AFMDGAFA_00164 PF01613 Flavin reductase like domain AFMDGAFA_00165 PF03692 Putative zinc- or iron-chelating domain AFMDGAFA_00166 PF00478 IMP dehydrogenase / GMP reductase domain AFMDGAFA_00166 PF00571 CBS domain AFMDGAFA_00167 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AFMDGAFA_00167 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AFMDGAFA_00167 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AFMDGAFA_00167 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AFMDGAFA_00168 PF01243 Pyridoxamine 5'-phosphate oxidase AFMDGAFA_00168 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AFMDGAFA_00169 PF17768 RecJ OB domain AFMDGAFA_00169 PF01368 DHH family AFMDGAFA_00169 PF02272 DHHA1 domain AFMDGAFA_00171 PF00472 RF-1 domain AFMDGAFA_00171 PF03462 PCRF domain AFMDGAFA_00174 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AFMDGAFA_00175 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AFMDGAFA_00177 PF00924 Mechanosensitive ion channel AFMDGAFA_00179 PF13193 AMP-binding enzyme C-terminal domain AFMDGAFA_00179 PF00501 AMP-binding enzyme AFMDGAFA_00179 PF16177 Acetyl-coenzyme A synthetase N-terminus AFMDGAFA_00180 PF00857 Isochorismatase family AFMDGAFA_00181 PF01037 Lrp/AsnC ligand binding domain AFMDGAFA_00182 PF00296 Luciferase-like monooxygenase AFMDGAFA_00183 PF03358 NADPH-dependent FMN reductase AFMDGAFA_00184 PF00072 Response regulator receiver domain AFMDGAFA_00184 PF00196 Bacterial regulatory proteins, luxR family AFMDGAFA_00186 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFMDGAFA_00186 PF01627 Hpt domain AFMDGAFA_00186 PF00072 Response regulator receiver domain AFMDGAFA_00186 PF00672 HAMP domain AFMDGAFA_00186 PF00512 His Kinase A (phospho-acceptor) domain AFMDGAFA_00187 PF04341 Protein of unknown function, DUF485 AFMDGAFA_00188 PF00474 Sodium:solute symporter family AFMDGAFA_00190 PF02028 BCCT, betaine/carnitine/choline family transporter AFMDGAFA_00192 PF00990 Diguanylate cyclase, GGDEF domain AFMDGAFA_00193 PF00005 ABC transporter AFMDGAFA_00193 PF17755 UvrA DNA-binding domain AFMDGAFA_00193 PF17760 UvrA interaction domain AFMDGAFA_00194 PF16925 Tetracyclin repressor-like, C-terminal domain AFMDGAFA_00194 PF00440 Bacterial regulatory proteins, tetR family AFMDGAFA_00195 PF00107 Zinc-binding dehydrogenase AFMDGAFA_00195 PF08240 Alcohol dehydrogenase GroES-like domain AFMDGAFA_00197 PF06942 GlpM protein AFMDGAFA_00198 PF03070 TENA/THI-4/PQQC family AFMDGAFA_00198 PF02581 Thiamine monophosphate synthase AFMDGAFA_00198 PF08543 Phosphomethylpyrimidine kinase AFMDGAFA_00200 PF07690 Major Facilitator Superfamily AFMDGAFA_00201 PF00436 Single-strand binding protein family AFMDGAFA_00203 PF03591 AzlC protein AFMDGAFA_00205 PF00324 Amino acid permease AFMDGAFA_00206 PF00392 Bacterial regulatory proteins, gntR family AFMDGAFA_00206 PF00155 Aminotransferase class I and II AFMDGAFA_00207 PF00202 Aminotransferase class-III AFMDGAFA_00208 PF00171 Aldehyde dehydrogenase family AFMDGAFA_00209 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFMDGAFA_00210 PF00857 Isochorismatase family AFMDGAFA_00211 PF05726 Pirin C-terminal cupin domain AFMDGAFA_00211 PF02678 Pirin AFMDGAFA_00212 PF01593 Flavin containing amine oxidoreductase AFMDGAFA_00217 PF07690 Major Facilitator Superfamily AFMDGAFA_00218 PF03466 LysR substrate binding domain AFMDGAFA_00218 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFMDGAFA_00222 PF00248 Aldo/keto reductase family AFMDGAFA_00223 PF00248 Aldo/keto reductase family AFMDGAFA_00224 PF12833 Helix-turn-helix domain AFMDGAFA_00224 PF02311 AraC-like ligand binding domain AFMDGAFA_00229 PF01638 HxlR-like helix-turn-helix AFMDGAFA_00235 PF01638 HxlR-like helix-turn-helix AFMDGAFA_00236 PF02525 Flavodoxin-like fold AFMDGAFA_00241 PF12833 Helix-turn-helix domain AFMDGAFA_00243 PF02705 K+ potassium transporter AFMDGAFA_00248 PF00230 Major intrinsic protein AFMDGAFA_00251 PF00977 Histidine biosynthesis protein AFMDGAFA_00252 PF01636 Phosphotransferase enzyme family AFMDGAFA_00255 PF03992 Antibiotic biosynthesis monooxygenase AFMDGAFA_00257 PF01381 Helix-turn-helix AFMDGAFA_00258 PF00977 Histidine biosynthesis protein AFMDGAFA_00261 PF00117 Glutamine amidotransferase class-I AFMDGAFA_00262 PF00475 Imidazoleglycerol-phosphate dehydratase AFMDGAFA_00266 PF00583 Acetyltransferase (GNAT) family AFMDGAFA_00267 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain AFMDGAFA_00267 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain AFMDGAFA_00268 PF00512 His Kinase A (phospho-acceptor) domain AFMDGAFA_00268 PF00672 HAMP domain AFMDGAFA_00268 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFMDGAFA_00269 PF00072 Response regulator receiver domain AFMDGAFA_00269 PF00486 Transcriptional regulatory protein, C terminal AFMDGAFA_00270 PF16921 Tex protein YqgF-like domain AFMDGAFA_00270 PF09371 Tex-like protein N-terminal domain AFMDGAFA_00270 PF00575 S1 RNA binding domain AFMDGAFA_00270 PF17674 HHH domain AFMDGAFA_00271 PF00916 Sulfate permease family AFMDGAFA_00271 PF01740 STAS domain AFMDGAFA_00272 PF00106 short chain dehydrogenase AFMDGAFA_00275 PF01965 DJ-1/PfpI family AFMDGAFA_00276 PF01053 Cys/Met metabolism PLP-dependent enzyme AFMDGAFA_00277 PF12848 ABC transporter AFMDGAFA_00277 PF00005 ABC transporter AFMDGAFA_00282 PF00529 Cation efflux system protein CusB domain 1 AFMDGAFA_00282 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AFMDGAFA_00283 PF00873 AcrB/AcrD/AcrF family AFMDGAFA_00284 PF01545 Cation efflux family AFMDGAFA_00290 PF00324 Amino acid permease AFMDGAFA_00293 PF19269 Anticodon binding domain AFMDGAFA_00293 PF00749 tRNA synthetases class I (E and Q), catalytic domain AFMDGAFA_00296 PF01795 MraW methylase family AFMDGAFA_00298 PF03717 Penicillin-binding Protein dimerisation domain AFMDGAFA_00298 PF00905 Penicillin binding protein transpeptidase domain AFMDGAFA_00299 PF01225 Mur ligase family, catalytic domain AFMDGAFA_00299 PF02875 Mur ligase family, glutamate ligase domain AFMDGAFA_00299 PF08245 Mur ligase middle domain AFMDGAFA_00300 PF01225 Mur ligase family, catalytic domain AFMDGAFA_00300 PF02875 Mur ligase family, glutamate ligase domain AFMDGAFA_00300 PF08245 Mur ligase middle domain AFMDGAFA_00301 PF00953 Glycosyl transferase family 4 AFMDGAFA_00303 PF13649 Methyltransferase domain AFMDGAFA_00304 PF00912 Transglycosylase AFMDGAFA_00304 PF00905 Penicillin binding protein transpeptidase domain AFMDGAFA_00304 PF17092 Penicillin-binding protein OB-like domain AFMDGAFA_00305 PF11104 Type IV pilus assembly protein PilM; AFMDGAFA_00306 PF05137 Fimbrial assembly protein (PilN) AFMDGAFA_00307 PF04350 Pilus assembly protein, PilO AFMDGAFA_00309 PF07660 Secretin and TonB N terminus short domain AFMDGAFA_00309 PF03958 Bacterial type II/III secretion system short domain AFMDGAFA_00309 PF00263 Bacterial type II and III secretion system protein AFMDGAFA_00309 PF11741 AMIN domain AFMDGAFA_00310 PF01202 Shikimate kinase AFMDGAFA_00311 PF01761 3-dehydroquinate synthase AFMDGAFA_00313 PF01645 Conserved region in glutamate synthase AFMDGAFA_00313 PF01493 GXGXG motif AFMDGAFA_00313 PF00310 Glutamine amidotransferases class-II AFMDGAFA_00313 PF04898 Glutamate synthase central domain AFMDGAFA_00314 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AFMDGAFA_00314 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFMDGAFA_00316 PF04011 LemA family AFMDGAFA_00317 PF04536 TPM domain AFMDGAFA_00319 PF00114 Pilin (bacterial filament) AFMDGAFA_00319 PF07963 Prokaryotic N-terminal methylation motif AFMDGAFA_00320 PF15864 Protein glycosylation ligase AFMDGAFA_00320 PF04932 O-Antigen ligase AFMDGAFA_00320 PF11846 Virulence factor membrane-bound polymerase, C-terminal AFMDGAFA_00321 PF00210 Ferritin-like domain AFMDGAFA_00322 PF04324 BFD-like [2Fe-2S] binding domain AFMDGAFA_00323 PF01042 Endoribonuclease L-PSP AFMDGAFA_00324 PF13291 ACT domain AFMDGAFA_00324 PF19296 RelA/SpoT, AH and RIS domains AFMDGAFA_00324 PF02824 TGS domain AFMDGAFA_00324 PF04607 Region found in RelA / SpoT proteins AFMDGAFA_00325 PF01192 RNA polymerase Rpb6 AFMDGAFA_00326 PF00625 Guanylate kinase AFMDGAFA_00327 PF02401 LytB protein AFMDGAFA_00335 PF00886 Ribosomal protein S16 AFMDGAFA_00336 PF01782 RimM N-terminal domain AFMDGAFA_00336 PF05239 PRC-barrel domain AFMDGAFA_00337 PF01746 tRNA (Guanine-1)-methyltransferase AFMDGAFA_00338 PF01245 Ribosomal protein L19 AFMDGAFA_00339 PF00561 alpha/beta hydrolase fold AFMDGAFA_00340 PF03280 Proteobacterial lipase chaperone protein AFMDGAFA_00341 PF09157 Pseudouridine synthase II TruB, C-terminal AFMDGAFA_00341 PF16198 tRNA pseudouridylate synthase B C-terminal domain AFMDGAFA_00341 PF01509 TruB family pseudouridylate synthase (N terminal domain) AFMDGAFA_00342 PF01925 Sulfite exporter TauE/SafE AFMDGAFA_00344 PF00892 EamA-like transporter family AFMDGAFA_00345 PF00892 EamA-like transporter family AFMDGAFA_00346 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AFMDGAFA_00346 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AFMDGAFA_00347 PF02913 FAD linked oxidases, C-terminal domain AFMDGAFA_00347 PF01565 FAD binding domain AFMDGAFA_00349 PF03992 Antibiotic biosynthesis monooxygenase AFMDGAFA_00350 PF02525 Flavodoxin-like fold AFMDGAFA_00352 PF07690 Major Facilitator Superfamily AFMDGAFA_00353 PF12805 FUSC-like inner membrane protein yccS AFMDGAFA_00354 PF00080 Copper/zinc superoxide dismutase (SODC) AFMDGAFA_00355 PF01594 AI-2E family transporter AFMDGAFA_00360 PF08241 Methyltransferase domain AFMDGAFA_00362 PF00324 Amino acid permease AFMDGAFA_00363 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AFMDGAFA_00363 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AFMDGAFA_00364 PF00202 Aminotransferase class-III AFMDGAFA_00365 PF04958 Arginine N-succinyltransferase beta subunit AFMDGAFA_00366 PF00171 Aldehyde dehydrogenase family AFMDGAFA_00367 PF04996 Succinylarginine dihydrolase AFMDGAFA_00368 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AFMDGAFA_00371 PF05922 Peptidase inhibitor I9 AFMDGAFA_00371 PF00082 Subtilase family AFMDGAFA_00374 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFMDGAFA_00374 PF03466 LysR substrate binding domain AFMDGAFA_00375 PF00892 EamA-like transporter family AFMDGAFA_00378 PF05746 DALR anticodon binding domain AFMDGAFA_00378 PF02092 Glycyl-tRNA synthetase beta subunit AFMDGAFA_00379 PF02091 Glycyl-tRNA synthetase alpha subunit AFMDGAFA_00380 PF07690 Major Facilitator Superfamily AFMDGAFA_00383 PF00571 CBS domain AFMDGAFA_00384 PF04024 PspC domain AFMDGAFA_00386 PF02770 Acyl-CoA dehydrogenase, middle domain AFMDGAFA_00386 PF12806 Acetyl-CoA dehydrogenase C-terminal like AFMDGAFA_00386 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFMDGAFA_00386 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFMDGAFA_00388 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AFMDGAFA_00388 PF01488 Shikimate / quinate 5-dehydrogenase AFMDGAFA_00388 PF08501 Shikimate dehydrogenase substrate binding domain AFMDGAFA_00389 PF01218 Coproporphyrinogen III oxidase AFMDGAFA_00390 PF00925 GTP cyclohydrolase II AFMDGAFA_00391 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AFMDGAFA_00391 PF02779 Transketolase, pyrimidine binding domain AFMDGAFA_00391 PF02780 Transketolase, C-terminal domain AFMDGAFA_00392 PF00459 Inositol monophosphatase family AFMDGAFA_00393 PF12343 DeaD helicase C-terminal disordered region AFMDGAFA_00393 PF00270 DEAD/DEAH box helicase AFMDGAFA_00393 PF03880 DbpA RNA binding domain AFMDGAFA_00393 PF00271 Helicase conserved C-terminal domain AFMDGAFA_00395 PF00005 ABC transporter AFMDGAFA_00396 PF02405 Permease MlaE AFMDGAFA_00398 PF05494 MlaC protein AFMDGAFA_00400 PF01544 CorA-like Mg2+ transporter protein AFMDGAFA_00401 PF03641 Possible lysine decarboxylase AFMDGAFA_00402 PF00293 NUDIX domain AFMDGAFA_00403 PF00156 Phosphoribosyl transferase domain AFMDGAFA_00404 PF17191 RecG wedge domain AFMDGAFA_00404 PF00270 DEAD/DEAH box helicase AFMDGAFA_00404 PF00271 Helicase conserved C-terminal domain AFMDGAFA_00404 PF19833 ATP-dependent DNA helicase RecG, domain 3, C-terminal AFMDGAFA_00406 PF19582 Solute-binding protein AdeT 1/2 AFMDGAFA_00407 PF19277 Glycerol-3-phosphate acyltransferase C-terminal region AFMDGAFA_00407 PF01553 Acyltransferase AFMDGAFA_00409 PF00375 Sodium:dicarboxylate symporter family AFMDGAFA_00411 PF01926 50S ribosome-binding GTPase AFMDGAFA_00412 PF02082 Iron-dependent Transcriptional regulator AFMDGAFA_00413 PF00042 Globin AFMDGAFA_00413 PF00970 Oxidoreductase FAD-binding domain AFMDGAFA_00413 PF00175 Oxidoreductase NAD-binding domain AFMDGAFA_00414 PF05872 Helicase HerA-like C-terminal AFMDGAFA_00415 PF01053 Cys/Met metabolism PLP-dependent enzyme AFMDGAFA_00416 PF00117 Glutamine amidotransferase class-I AFMDGAFA_00417 PF00338 Ribosomal protein S10p/S20e AFMDGAFA_00418 PF00297 Ribosomal protein L3 AFMDGAFA_00419 PF00573 Ribosomal protein L4/L1 family AFMDGAFA_00420 PF00276 Ribosomal protein L23 AFMDGAFA_00421 PF03947 Ribosomal Proteins L2, C-terminal domain AFMDGAFA_00421 PF00181 Ribosomal Proteins L2, RNA binding domain AFMDGAFA_00422 PF00203 Ribosomal protein S19 AFMDGAFA_00423 PF00237 Ribosomal protein L22p/L17e AFMDGAFA_00424 PF00189 Ribosomal protein S3, C-terminal domain AFMDGAFA_00424 PF07650 KH domain AFMDGAFA_00425 PF00252 Ribosomal protein L16p/L10e AFMDGAFA_00426 PF00831 Ribosomal L29 protein AFMDGAFA_00427 PF00366 Ribosomal protein S17 AFMDGAFA_00428 PF00238 Ribosomal protein L14p/L23e AFMDGAFA_00429 PF00467 KOW motif AFMDGAFA_00429 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AFMDGAFA_00430 PF00673 ribosomal L5P family C-terminus AFMDGAFA_00430 PF00281 Ribosomal protein L5 AFMDGAFA_00431 PF00253 Ribosomal protein S14p/S29e AFMDGAFA_00432 PF00410 Ribosomal protein S8 AFMDGAFA_00433 PF00347 Ribosomal protein L6 AFMDGAFA_00434 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AFMDGAFA_00435 PF00333 Ribosomal protein S5, N-terminal domain AFMDGAFA_00435 PF03719 Ribosomal protein S5, C-terminal domain AFMDGAFA_00436 PF00327 Ribosomal protein L30p/L7e AFMDGAFA_00437 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AFMDGAFA_00438 PF00344 SecY AFMDGAFA_00439 PF00444 Ribosomal protein L36 AFMDGAFA_00440 PF00416 Ribosomal protein S13/S18 AFMDGAFA_00441 PF00411 Ribosomal protein S11 AFMDGAFA_00442 PF00163 Ribosomal protein S4/S9 N-terminal domain AFMDGAFA_00442 PF01479 S4 domain AFMDGAFA_00443 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AFMDGAFA_00443 PF01000 RNA polymerase Rpb3/RpoA insert domain AFMDGAFA_00443 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AFMDGAFA_00444 PF01196 Ribosomal protein L17 AFMDGAFA_00445 PF00743 Flavin-binding monooxygenase-like AFMDGAFA_00446 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFMDGAFA_00446 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFMDGAFA_00446 PF02770 Acyl-CoA dehydrogenase, middle domain AFMDGAFA_00447 PF03937 Flavinator of succinate dehydrogenase AFMDGAFA_00454 PF09526 Probable metal-binding protein (DUF2387) AFMDGAFA_00455 PF01432 Peptidase family M3 AFMDGAFA_00455 PF19310 Neurolysin/Thimet oligopeptidase, N-terminal domain AFMDGAFA_00456 PF00575 S1 RNA binding domain AFMDGAFA_00456 PF17876 Cold shock domain AFMDGAFA_00456 PF08461 Ribonuclease R winged-helix domain AFMDGAFA_00456 PF08206 Ribonuclease B OB domain AFMDGAFA_00456 PF00773 RNB domain AFMDGAFA_00465 PF01557 Fumarylacetoacetate (FAA) hydrolase family AFMDGAFA_00466 PF12833 Helix-turn-helix domain AFMDGAFA_00467 PF00892 EamA-like transporter family AFMDGAFA_00468 PF03631 Virulence factor BrkB AFMDGAFA_00469 PF03358 NADPH-dependent FMN reductase AFMDGAFA_00474 PF02130 Endoribonuclease YbeY AFMDGAFA_00475 PF02562 PhoH-like protein AFMDGAFA_00476 PF00919 Uncharacterized protein family UPF0004 AFMDGAFA_00476 PF01938 TRAM domain AFMDGAFA_00476 PF04055 Radical SAM superfamily AFMDGAFA_00477 PF01551 Peptidase family M23 AFMDGAFA_00477 PF10145 Phage-related minor tail protein AFMDGAFA_00477 PF01464 Transglycosylase SLT domain AFMDGAFA_00479 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AFMDGAFA_00479 PF00056 lactate/malate dehydrogenase, NAD binding domain AFMDGAFA_00483 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ AFMDGAFA_00484 PF01066 CDP-alcohol phosphatidyltransferase AFMDGAFA_00493 PF02770 Acyl-CoA dehydrogenase, middle domain AFMDGAFA_00493 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFMDGAFA_00493 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFMDGAFA_00494 PF17932 Tetracyclin repressor-like, C-terminal domain AFMDGAFA_00494 PF00440 Bacterial regulatory proteins, tetR family AFMDGAFA_00497 PF01039 Carboxyl transferase domain AFMDGAFA_00498 PF02770 Acyl-CoA dehydrogenase, middle domain AFMDGAFA_00498 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFMDGAFA_00498 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFMDGAFA_00500 PF02785 Biotin carboxylase C-terminal domain AFMDGAFA_00500 PF00289 Biotin carboxylase, N-terminal domain AFMDGAFA_00500 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AFMDGAFA_00500 PF00364 Biotin-requiring enzyme AFMDGAFA_00502 PF04386 Stringent starvation protein B AFMDGAFA_00503 PF13417 Glutathione S-transferase, N-terminal domain AFMDGAFA_00503 PF00043 Glutathione S-transferase, C-terminal domain AFMDGAFA_00504 PF00380 Ribosomal protein S9/S16 AFMDGAFA_00505 PF00572 Ribosomal protein L13 AFMDGAFA_00506 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AFMDGAFA_00507 PF00398 Ribosomal RNA adenine dimethylase AFMDGAFA_00508 PF00149 Calcineurin-like phosphoesterase AFMDGAFA_00512 PF13167 GTP-binding GTPase N-terminal AFMDGAFA_00512 PF19275 HflX C-terminal domain AFMDGAFA_00512 PF01926 50S ribosome-binding GTPase AFMDGAFA_00512 PF16360 GTP-binding GTPase Middle Region AFMDGAFA_00513 PF01553 Acyltransferase AFMDGAFA_00514 PF13091 PLD-like domain AFMDGAFA_00515 PF00149 Calcineurin-like phosphoesterase AFMDGAFA_00516 PF00691 OmpA family AFMDGAFA_00516 PF01389 OmpA-like transmembrane domain AFMDGAFA_00517 PF17152 Periplasmic sensor domain AFMDGAFA_00517 PF00990 Diguanylate cyclase, GGDEF domain AFMDGAFA_00524 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFMDGAFA_00524 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AFMDGAFA_00526 PF04273 Beta-lactamase hydrolase-like protein, phosphatase-like domain AFMDGAFA_00526 PF00753 Metallo-beta-lactamase superfamily AFMDGAFA_00527 PF00561 alpha/beta hydrolase fold AFMDGAFA_00528 PF00085 Thioredoxin AFMDGAFA_00529 PF03061 Thioesterase superfamily AFMDGAFA_00536 PF03887 YfbU domain AFMDGAFA_00552 PF19335 Heavy metal binding domain AFMDGAFA_00553 PF00672 HAMP domain AFMDGAFA_00553 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFMDGAFA_00553 PF00512 His Kinase A (phospho-acceptor) domain AFMDGAFA_00554 PF00072 Response regulator receiver domain AFMDGAFA_00554 PF00486 Transcriptional regulatory protein, C terminal AFMDGAFA_00556 PF00394 Multicopper oxidase AFMDGAFA_00556 PF07732 Multicopper oxidase AFMDGAFA_00556 PF07731 Multicopper oxidase AFMDGAFA_00560 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AFMDGAFA_00560 PF19335 Heavy metal binding domain AFMDGAFA_00561 PF00873 AcrB/AcrD/AcrF family AFMDGAFA_00563 PF07670 Nucleoside recognition AFMDGAFA_00563 PF02421 Ferrous iron transport protein B AFMDGAFA_00563 PF07664 Ferrous iron transport protein B C terminus AFMDGAFA_00566 PF13411 MerR HTH family regulatory protein AFMDGAFA_00570 PF13356 Arm DNA-binding domain AFMDGAFA_00570 PF00589 Phage integrase family AFMDGAFA_00571 PF04461 Protein of unknown function (DUF520) AFMDGAFA_00573 PF01266 FAD dependent oxidoreductase AFMDGAFA_00573 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AFMDGAFA_00575 PF03795 YCII-related domain AFMDGAFA_00576 PF04279 Intracellular septation protein A AFMDGAFA_00577 PF02811 PHP domain AFMDGAFA_00578 PF01062 Bestrophin, RFP-TM, chloride channel AFMDGAFA_00579 PF04002 RadC-like JAB domain AFMDGAFA_00579 PF20582 UPF0758 N-terminal AFMDGAFA_00580 PF02441 Flavoprotein AFMDGAFA_00580 PF04127 DNA / pantothenate metabolism flavoprotein AFMDGAFA_00581 PF07549 SecD/SecF GG Motif AFMDGAFA_00581 PF02355 Protein export membrane protein AFMDGAFA_00582 PF02355 Protein export membrane protein AFMDGAFA_00582 PF07549 SecD/SecF GG Motif AFMDGAFA_00582 PF13721 SecD export protein N-terminal TM region AFMDGAFA_00583 PF02699 Preprotein translocase subunit AFMDGAFA_00584 PF01702 Queuine tRNA-ribosyltransferase AFMDGAFA_00587 PF02547 Queuosine biosynthesis protein AFMDGAFA_00589 PF00589 Phage integrase family AFMDGAFA_00589 PF13356 Arm DNA-binding domain AFMDGAFA_00592 PF01381 Helix-turn-helix AFMDGAFA_00597 PF00512 His Kinase A (phospho-acceptor) domain AFMDGAFA_00597 PF07689 KaiB domain AFMDGAFA_00597 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFMDGAFA_00598 PF03710 Glutamate-ammonia ligase adenylyltransferase AFMDGAFA_00598 PF08335 GlnD PII-uridylyltransferase AFMDGAFA_00599 PF01063 Amino-transferase class IV AFMDGAFA_00602 PF01522 Polysaccharide deacetylase AFMDGAFA_00603 PF00535 Glycosyl transferase family 2 AFMDGAFA_00604 PF13439 Glycosyltransferase Family 4 AFMDGAFA_00604 PF00534 Glycosyl transferases group 1 AFMDGAFA_00607 PF02350 UDP-N-acetylglucosamine 2-epimerase AFMDGAFA_00610 PF01336 OB-fold nucleic acid binding domain AFMDGAFA_00610 PF00152 tRNA synthetases class II (D, K and N) AFMDGAFA_00610 PF02938 GAD domain AFMDGAFA_00612 PF00593 TonB dependent receptor AFMDGAFA_00612 PF07715 TonB-dependent Receptor Plug Domain AFMDGAFA_00616 PF06146 Phosphate-starvation-inducible E family AFMDGAFA_00617 PF02770 Acyl-CoA dehydrogenase, middle domain AFMDGAFA_00617 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFMDGAFA_00617 PF12806 Acetyl-CoA dehydrogenase C-terminal like AFMDGAFA_00617 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFMDGAFA_00618 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFMDGAFA_00618 PF12806 Acetyl-CoA dehydrogenase C-terminal like AFMDGAFA_00618 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFMDGAFA_00618 PF02770 Acyl-CoA dehydrogenase, middle domain AFMDGAFA_00620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFMDGAFA_00620 PF00672 HAMP domain AFMDGAFA_00620 PF00512 His Kinase A (phospho-acceptor) domain AFMDGAFA_00621 PF00486 Transcriptional regulatory protein, C terminal AFMDGAFA_00621 PF00072 Response regulator receiver domain AFMDGAFA_00622 PF02696 Protein adenylyltransferase SelO AFMDGAFA_00626 PF01923 Cobalamin adenosyltransferase AFMDGAFA_00627 PF00593 TonB dependent receptor AFMDGAFA_00627 PF07715 TonB-dependent Receptor Plug Domain AFMDGAFA_00629 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AFMDGAFA_00630 PF00291 Pyridoxal-phosphate dependent enzyme AFMDGAFA_00635 PF00290 Tryptophan synthase alpha chain AFMDGAFA_00636 PF01039 Carboxyl transferase domain AFMDGAFA_00637 PF08245 Mur ligase middle domain AFMDGAFA_00637 PF02875 Mur ligase family, glutamate ligase domain AFMDGAFA_00640 PF00753 Metallo-beta-lactamase superfamily AFMDGAFA_00641 PF10417 C-terminal domain of 1-Cys peroxiredoxin AFMDGAFA_00641 PF00578 AhpC/TSA family AFMDGAFA_00642 PF01043 SecA preprotein cross-linking domain AFMDGAFA_00642 PF07516 SecA Wing and Scaffold domain AFMDGAFA_00642 PF07517 SecA DEAD-like domain AFMDGAFA_00642 PF02810 SEC-C motif AFMDGAFA_00644 PF00083 Sugar (and other) transporter AFMDGAFA_00644 PF07690 Major Facilitator Superfamily AFMDGAFA_00645 PF03006 Haemolysin-III related AFMDGAFA_00647 PF13673 Acetyltransferase (GNAT) domain AFMDGAFA_00650 PF00378 Enoyl-CoA hydratase/isomerase AFMDGAFA_00650 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AFMDGAFA_00650 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AFMDGAFA_00651 PF02803 Thiolase, C-terminal domain AFMDGAFA_00651 PF00108 Thiolase, N-terminal domain AFMDGAFA_00652 PF02311 AraC-like ligand binding domain AFMDGAFA_00652 PF12833 Helix-turn-helix domain AFMDGAFA_00653 PF02515 CoA-transferase family III AFMDGAFA_00654 PF04966 Carbohydrate-selective porin, OprB family AFMDGAFA_00655 PF01011 PQQ enzyme repeat AFMDGAFA_00656 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AFMDGAFA_00656 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AFMDGAFA_00658 PF00893 Small Multidrug Resistance protein AFMDGAFA_00660 PF02803 Thiolase, C-terminal domain AFMDGAFA_00660 PF00108 Thiolase, N-terminal domain AFMDGAFA_00662 PF13505 Outer membrane protein beta-barrel domain AFMDGAFA_00662 PF00691 OmpA family AFMDGAFA_00664 PF01139 tRNA-splicing ligase RtcB AFMDGAFA_00666 PF00324 Amino acid permease AFMDGAFA_00667 PF05175 Methyltransferase small domain AFMDGAFA_00667 PF08468 Methyltransferase small domain N-terminal AFMDGAFA_00668 PF00860 Permease family AFMDGAFA_00669 PF00679 Elongation factor G C-terminus AFMDGAFA_00669 PF00009 Elongation factor Tu GTP binding domain AFMDGAFA_00669 PF03144 Elongation factor Tu domain 2 AFMDGAFA_00670 PF01741 Large-conductance mechanosensitive channel, MscL AFMDGAFA_00673 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AFMDGAFA_00673 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AFMDGAFA_00673 PF06827 Zinc finger found in FPG and IleRS AFMDGAFA_00674 PF02245 Methylpurine-DNA glycosylase (MPG) AFMDGAFA_00675 PF07715 TonB-dependent Receptor Plug Domain AFMDGAFA_00675 PF00593 TonB dependent receptor AFMDGAFA_00676 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AFMDGAFA_00679 PF10411 Disulfide bond isomerase protein N-terminus AFMDGAFA_00679 PF13098 Thioredoxin-like domain AFMDGAFA_00680 PF01571 Aminomethyltransferase folate-binding domain AFMDGAFA_00682 PF04343 Protein of unknown function, DUF488 AFMDGAFA_00683 PF08274 PhnA Zinc-Ribbon AFMDGAFA_00683 PF03831 PhnA domain AFMDGAFA_00684 PF07411 Domain of unknown function (DUF1508) AFMDGAFA_00685 PF03129 Anticodon binding domain AFMDGAFA_00685 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AFMDGAFA_00685 PF04073 Aminoacyl-tRNA editing domain AFMDGAFA_00686 PF00873 AcrB/AcrD/AcrF family AFMDGAFA_00689 PF00072 Response regulator receiver domain AFMDGAFA_00690 PF00072 Response regulator receiver domain AFMDGAFA_00691 PF01584 CheW-like domain AFMDGAFA_00692 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFMDGAFA_00692 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term AFMDGAFA_00693 PF01627 Hpt domain AFMDGAFA_00693 PF00072 Response regulator receiver domain AFMDGAFA_00693 PF01584 CheW-like domain AFMDGAFA_00693 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFMDGAFA_00695 PF01546 Peptidase family M20/M25/M40 AFMDGAFA_00695 PF07687 Peptidase dimerisation domain AFMDGAFA_00696 PF08085 Entericidin EcnA/B family AFMDGAFA_00698 PF04304 Protein of unknown function (DUF454) AFMDGAFA_00699 PF17969 L,D-transpeptidase C-terminal domain AFMDGAFA_00699 PF03734 L,D-transpeptidase catalytic domain AFMDGAFA_00707 PF00175 Oxidoreductase NAD-binding domain AFMDGAFA_00707 PF00258 Flavodoxin AFMDGAFA_00707 PF00667 FAD binding domain AFMDGAFA_00709 PF12805 FUSC-like inner membrane protein yccS AFMDGAFA_00710 PF07690 Major Facilitator Superfamily AFMDGAFA_00711 PF00881 Nitroreductase family AFMDGAFA_00713 PF01235 Sodium:alanine symporter family AFMDGAFA_00714 PF01734 Patatin-like phospholipase AFMDGAFA_00715 PF00291 Pyridoxal-phosphate dependent enzyme AFMDGAFA_00715 PF13291 ACT domain AFMDGAFA_00716 PF05992 SbmA/BacA-like family AFMDGAFA_00717 PF01431 Peptidase family M13 AFMDGAFA_00717 PF05649 Peptidase family M13 AFMDGAFA_00721 PF01965 DJ-1/PfpI family AFMDGAFA_00722 PF02637 GatB domain AFMDGAFA_00722 PF02934 GatB/GatE catalytic domain AFMDGAFA_00723 PF01425 Amidase AFMDGAFA_00724 PF02686 Glu-tRNAGln amidotransferase C subunit AFMDGAFA_00726 PF04085 rod shape-determining protein MreC AFMDGAFA_00727 PF04093 rod shape-determining protein MreD AFMDGAFA_00728 PF02545 Maf-like protein AFMDGAFA_00729 PF10150 Ribonuclease E/G family AFMDGAFA_00729 PF00575 S1 RNA binding domain AFMDGAFA_00731 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain AFMDGAFA_00731 PF06974 WS/DGAT C-terminal domain AFMDGAFA_00732 PF01507 Phosphoadenosine phosphosulfate reductase family AFMDGAFA_00735 PF02525 Flavodoxin-like fold AFMDGAFA_00739 PF02673 Bacitracin resistance protein BacA AFMDGAFA_00740 PF06719 AraC-type transcriptional regulator N-terminus AFMDGAFA_00740 PF12833 Helix-turn-helix domain AFMDGAFA_00741 PF14765 Polyketide synthase dehydratase AFMDGAFA_00741 PF08659 KR domain AFMDGAFA_00741 PF02801 Beta-ketoacyl synthase, C-terminal domain AFMDGAFA_00741 PF00550 Phosphopantetheine attachment site AFMDGAFA_00741 PF16197 Ketoacyl-synthetase C-terminal extension AFMDGAFA_00741 PF09277 Erythronolide synthase, docking AFMDGAFA_00741 PF08990 Erythronolide synthase docking domain AFMDGAFA_00741 PF08240 Alcohol dehydrogenase GroES-like domain AFMDGAFA_00741 PF00698 Acyl transferase domain AFMDGAFA_00741 PF00109 Beta-ketoacyl synthase, N-terminal domain AFMDGAFA_00742 PF01965 DJ-1/PfpI family AFMDGAFA_00744 PF00324 Amino acid permease AFMDGAFA_00745 PF04303 PrpF protein AFMDGAFA_00746 PF00348 Polyprenyl synthetase AFMDGAFA_00747 PF04237 YjbR AFMDGAFA_00748 PF01145 SPFH domain / Band 7 family AFMDGAFA_00750 PF01734 Patatin-like phospholipase AFMDGAFA_00754 PF08019 Phosphoethanolamine transferase EptA/EptB AFMDGAFA_00754 PF00884 Sulfatase AFMDGAFA_00755 PF00072 Response regulator receiver domain AFMDGAFA_00755 PF00486 Transcriptional regulatory protein, C terminal AFMDGAFA_00756 PF00512 His Kinase A (phospho-acceptor) domain AFMDGAFA_00756 PF08521 Two-component sensor kinase N-terminal AFMDGAFA_00756 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFMDGAFA_00758 PF00909 Ammonium Transporter Family AFMDGAFA_00759 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFMDGAFA_00759 PF03466 LysR substrate binding domain AFMDGAFA_00763 PF08264 Anticodon-binding domain of tRNA ligase AFMDGAFA_00763 PF00133 tRNA synthetases class I (I, L, M and V) AFMDGAFA_00763 PF10458 Valyl tRNA synthetase tRNA binding arm AFMDGAFA_00767 PF01906 Putative heavy-metal-binding AFMDGAFA_00768 PF01906 Putative heavy-metal-binding AFMDGAFA_00769 PF02321 Outer membrane efflux protein AFMDGAFA_00770 PF00873 AcrB/AcrD/AcrF family AFMDGAFA_00771 PF00529 Cation efflux system protein CusB domain 1 AFMDGAFA_00771 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AFMDGAFA_00772 PF01569 PAP2 superfamily AFMDGAFA_00774 PF00348 Polyprenyl synthetase AFMDGAFA_00775 PF00829 Ribosomal prokaryotic L21 protein AFMDGAFA_00776 PF01016 Ribosomal L27 protein AFMDGAFA_00777 PF03548 Outer membrane lipoprotein carrier protein LolA AFMDGAFA_00779 PF02403 Seryl-tRNA synthetase N-terminal domain AFMDGAFA_00779 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AFMDGAFA_00780 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AFMDGAFA_00780 PF10414 Sirohaem synthase dimerisation region AFMDGAFA_00781 PF00588 SpoU rRNA Methylase family AFMDGAFA_00782 PF01638 HxlR-like helix-turn-helix AFMDGAFA_00783 PF03358 NADPH-dependent FMN reductase AFMDGAFA_00784 PF13520 Amino acid permease AFMDGAFA_00785 PF00465 Iron-containing alcohol dehydrogenase AFMDGAFA_00787 PF03099 Biotin/lipoate A/B protein ligase family AFMDGAFA_00788 PF04359 Protein of unknown function (DUF493) AFMDGAFA_00789 PF04546 Sigma-70, non-essential region AFMDGAFA_00789 PF04539 Sigma-70 region 3 AFMDGAFA_00789 PF04545 Sigma-70, region 4 AFMDGAFA_00789 PF00140 Sigma-70 factor, region 1.2 AFMDGAFA_00789 PF04542 Sigma-70 region 2 AFMDGAFA_00789 PF03979 Sigma-70 factor, region 1.1 AFMDGAFA_00793 PF00581 Rhodanese-like domain AFMDGAFA_00793 PF17773 UPF0176 acylphosphatase like domain AFMDGAFA_00795 PF00285 Citrate synthase, C-terminal domain AFMDGAFA_00796 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AFMDGAFA_00797 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AFMDGAFA_00798 PF00890 FAD binding domain AFMDGAFA_00798 PF02910 Fumarate reductase flavoprotein C-term AFMDGAFA_00799 PF13085 2Fe-2S iron-sulfur cluster binding domain AFMDGAFA_00800 PF16078 2-oxoglutarate dehydrogenase N-terminus AFMDGAFA_00800 PF00676 Dehydrogenase E1 component AFMDGAFA_00800 PF16870 2-oxoglutarate dehydrogenase C-terminal AFMDGAFA_00800 PF02779 Transketolase, pyrimidine binding domain AFMDGAFA_00801 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AFMDGAFA_00801 PF00364 Biotin-requiring enzyme AFMDGAFA_00801 PF02817 e3 binding domain AFMDGAFA_00802 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AFMDGAFA_00802 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFMDGAFA_00803 PF08442 ATP-grasp domain AFMDGAFA_00803 PF00549 CoA-ligase AFMDGAFA_00804 PF00549 CoA-ligase AFMDGAFA_00804 PF02629 CoA binding domain AFMDGAFA_00806 PF00579 tRNA synthetases class I (W and Y) AFMDGAFA_00807 PF05661 Protein of unknown function (DUF808) AFMDGAFA_00808 PF04228 Putative neutral zinc metallopeptidase AFMDGAFA_00809 PF00999 Sodium/hydrogen exchanger family AFMDGAFA_00812 PF09587 Bacterial capsule synthesis protein PGA_cap AFMDGAFA_00814 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AFMDGAFA_00815 PF00582 Universal stress protein family AFMDGAFA_00816 PF00132 Bacterial transferase hexapeptide (six repeats) AFMDGAFA_00817 PF01042 Endoribonuclease L-PSP AFMDGAFA_00818 PF00440 Bacterial regulatory proteins, tetR family AFMDGAFA_00819 PF03449 Transcription elongation factor, N-terminal AFMDGAFA_00819 PF01272 Transcription elongation factor, GreA/GreB, C-term AFMDGAFA_00820 PF02142 MGS-like domain AFMDGAFA_00820 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AFMDGAFA_00820 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AFMDGAFA_00821 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AFMDGAFA_00821 PF00117 Glutamine amidotransferase class-I AFMDGAFA_00824 PF01985 CRS1 / YhbY (CRM) domain AFMDGAFA_00825 PF01728 FtsJ-like methyltransferase AFMDGAFA_00826 PF00004 ATPase family associated with various cellular activities (AAA) AFMDGAFA_00826 PF17862 AAA+ lid domain AFMDGAFA_00826 PF06480 FtsH Extracellular AFMDGAFA_00826 PF01434 Peptidase family M41 AFMDGAFA_00827 PF00809 Pterin binding enzyme AFMDGAFA_00831 PF16655 PhoD-like phosphatase, N-terminal domain AFMDGAFA_00831 PF09423 PhoD-like phosphatase AFMDGAFA_00834 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AFMDGAFA_00834 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AFMDGAFA_00837 PF00083 Sugar (and other) transporter AFMDGAFA_00838 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AFMDGAFA_00838 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AFMDGAFA_00839 PF01266 FAD dependent oxidoreductase AFMDGAFA_00839 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AFMDGAFA_00840 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain AFMDGAFA_00840 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain AFMDGAFA_00841 PF00781 Diacylglycerol kinase catalytic domain AFMDGAFA_00842 PF00149 Calcineurin-like phosphoesterase AFMDGAFA_00843 PF00166 Chaperonin 10 Kd subunit AFMDGAFA_00844 PF00118 TCP-1/cpn60 chaperonin family AFMDGAFA_00845 PF01219 Prokaryotic diacylglycerol kinase AFMDGAFA_00846 PF00753 Metallo-beta-lactamase superfamily AFMDGAFA_00847 PF03009 Glycerophosphoryl diester phosphodiesterase family AFMDGAFA_00848 PF00873 AcrB/AcrD/AcrF family AFMDGAFA_00850 PF01435 Peptidase family M48 AFMDGAFA_00851 PF01464 Transglycosylase SLT domain AFMDGAFA_00852 PF01171 PP-loop family AFMDGAFA_00854 PF01464 Transglycosylase SLT domain AFMDGAFA_00854 PF00497 Bacterial extracellular solute-binding proteins, family 3 AFMDGAFA_00855 PF01272 Transcription elongation factor, GreA/GreB, C-term AFMDGAFA_00855 PF03449 Transcription elongation factor, N-terminal AFMDGAFA_00858 PF00501 AMP-binding enzyme AFMDGAFA_00858 PF13193 AMP-binding enzyme C-terminal domain AFMDGAFA_00858 PF00668 Condensation domain AFMDGAFA_00858 PF00550 Phosphopantetheine attachment site AFMDGAFA_00858 PF00975 Thioesterase domain AFMDGAFA_00860 PF09857 Putative toxin of bacterial toxin-antitoxin pair AFMDGAFA_00872 PF00881 Nitroreductase family AFMDGAFA_00875 PF02595 Glycerate kinase family AFMDGAFA_00876 PF01568 Molydopterin dinucleotide binding domain AFMDGAFA_00876 PF00384 Molybdopterin oxidoreductase AFMDGAFA_00877 PF02634 FdhD/NarQ family AFMDGAFA_00878 PF06803 Protein of unknown function (DUF1232) AFMDGAFA_00879 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AFMDGAFA_00879 PF11890 Domain of unknown function (DUF3410) AFMDGAFA_00879 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AFMDGAFA_00880 PF00152 tRNA synthetases class II (D, K and N) AFMDGAFA_00882 PF18073 Rubredoxin metal binding domain AFMDGAFA_00883 PF00324 Amino acid permease AFMDGAFA_00885 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AFMDGAFA_00885 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AFMDGAFA_00886 PF01678 Diaminopimelate epimerase AFMDGAFA_00887 PF01810 LysE type translocator AFMDGAFA_00888 PF02899 Phage integrase, N-terminal SAM-like domain AFMDGAFA_00888 PF00589 Phage integrase family AFMDGAFA_00889 PF01012 Electron transfer flavoprotein domain AFMDGAFA_00890 PF01012 Electron transfer flavoprotein domain AFMDGAFA_00890 PF00766 Electron transfer flavoprotein FAD-binding domain AFMDGAFA_00891 PF03989 DNA gyrase C-terminal domain, beta-propeller AFMDGAFA_00891 PF00521 DNA gyrase/topoisomerase IV, subunit A AFMDGAFA_00894 PF00535 Glycosyl transferase family 2 AFMDGAFA_00898 PF13533 Biotin-lipoyl like AFMDGAFA_00900 PF00266 Aminotransferase class-V AFMDGAFA_00903 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 AFMDGAFA_00905 PF02687 FtsX-like permease family AFMDGAFA_00905 PF12704 MacB-like periplasmic core domain AFMDGAFA_00906 PF00005 ABC transporter AFMDGAFA_00907 PF00753 Metallo-beta-lactamase superfamily AFMDGAFA_00907 PF13567 Domain of unknown function (DUF4131) AFMDGAFA_00907 PF03772 Competence protein AFMDGAFA_00909 PF01343 Peptidase family S49 AFMDGAFA_00909 PF06965 Na+/H+ antiporter 1 AFMDGAFA_00910 PF12697 Alpha/beta hydrolase family AFMDGAFA_00911 PF00551 Formyl transferase AFMDGAFA_00912 PF00586 AIR synthase related protein, N-terminal domain AFMDGAFA_00912 PF02769 AIR synthase related protein, C-terminal domain AFMDGAFA_00913 PF01594 AI-2E family transporter AFMDGAFA_00914 PF00308 Bacterial dnaA protein AFMDGAFA_00914 PF08299 Bacterial dnaA protein helix-turn-helix AFMDGAFA_00914 PF11638 DnaA N-terminal domain AFMDGAFA_00920 PF08032 RNA 2'-O ribose methyltransferase substrate binding AFMDGAFA_00920 PF00588 SpoU rRNA Methylase family AFMDGAFA_00921 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain AFMDGAFA_00921 PF18913 Fructose-1-6-bisphosphatase, C-terminal domain AFMDGAFA_00923 PF00691 OmpA family AFMDGAFA_00924 PF07676 WD40-like Beta Propeller Repeat AFMDGAFA_00924 PF04052 TolB amino-terminal domain AFMDGAFA_00926 PF02472 Biopolymer transport protein ExbD/TolR AFMDGAFA_00927 PF01618 MotA/TolQ/ExbB proton channel family AFMDGAFA_00928 PF03061 Thioesterase superfamily AFMDGAFA_00929 PF07687 Peptidase dimerisation domain AFMDGAFA_00929 PF01546 Peptidase family M20/M25/M40 AFMDGAFA_00930 PF05491 RuvB C-terminal winged helix domain AFMDGAFA_00930 PF05496 Holliday junction DNA helicase RuvB P-loop domain AFMDGAFA_00930 PF17864 RuvB AAA lid domain AFMDGAFA_00931 PF01330 RuvA N terminal domain AFMDGAFA_00931 PF07499 RuvA, C-terminal domain AFMDGAFA_00932 PF01966 HD domain AFMDGAFA_00933 PF02769 AIR synthase related protein, C-terminal domain AFMDGAFA_00933 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AFMDGAFA_00933 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal AFMDGAFA_00934 PF07690 Major Facilitator Superfamily AFMDGAFA_00936 PF07693 KAP family P-loop domain AFMDGAFA_00938 PF00425 chorismate binding enzyme AFMDGAFA_00939 PF00550 Phosphopantetheine attachment site AFMDGAFA_00939 PF00857 Isochorismatase family AFMDGAFA_00940 PF00106 short chain dehydrogenase AFMDGAFA_00941 PF00501 AMP-binding enzyme AFMDGAFA_00941 PF00668 Condensation domain AFMDGAFA_00941 PF00550 Phosphopantetheine attachment site AFMDGAFA_00942 PF00501 AMP-binding enzyme AFMDGAFA_00942 PF13193 AMP-binding enzyme C-terminal domain AFMDGAFA_00942 PF00668 Condensation domain AFMDGAFA_00943 PF00975 Thioesterase domain AFMDGAFA_00943 PF00550 Phosphopantetheine attachment site AFMDGAFA_00943 PF00501 AMP-binding enzyme AFMDGAFA_00943 PF13193 AMP-binding enzyme C-terminal domain AFMDGAFA_00943 PF00668 Condensation domain AFMDGAFA_00944 PF00501 AMP-binding enzyme AFMDGAFA_00944 PF13193 AMP-binding enzyme C-terminal domain AFMDGAFA_00945 PF13434 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase AFMDGAFA_00946 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AFMDGAFA_00946 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AFMDGAFA_00948 PF13340 Putative transposase of IS4/5 family (DUF4096) AFMDGAFA_00950 PF01648 4'-phosphopantetheinyl transferase superfamily AFMDGAFA_00950 PF17837 4'-phosphopantetheinyl transferase N-terminal domain AFMDGAFA_00951 PF00975 Thioesterase domain AFMDGAFA_00952 PF07715 TonB-dependent Receptor Plug Domain AFMDGAFA_00952 PF00593 TonB dependent receptor AFMDGAFA_00955 PF01554 MatE AFMDGAFA_00956 PF00005 ABC transporter AFMDGAFA_00956 PF03412 Peptidase C39 family AFMDGAFA_00956 PF00664 ABC transporter transmembrane region AFMDGAFA_00962 PF13276 HTH-like domain AFMDGAFA_00962 PF00665 Integrase core domain AFMDGAFA_00962 PF13333 Integrase core domain AFMDGAFA_00964 PF06527 TniQ AFMDGAFA_00964 PF15978 Tn7-like transposition protein D AFMDGAFA_00965 PF13737 Transposase DDE domain AFMDGAFA_00966 PF15978 Tn7-like transposition protein D AFMDGAFA_00966 PF06527 TniQ AFMDGAFA_00967 PF13401 AAA domain AFMDGAFA_00967 PF11426 Tn7 transposition regulator TnsC AFMDGAFA_00968 PF00665 Integrase core domain AFMDGAFA_00969 PF08721 TnsA endonuclease C terminal AFMDGAFA_00969 PF08722 TnsA-like endonuclease N terminal AFMDGAFA_00971 PF01784 NIF3 (NGG1p interacting factor 3) AFMDGAFA_00972 PF00378 Enoyl-CoA hydratase/isomerase AFMDGAFA_00973 PF00293 NUDIX domain AFMDGAFA_00973 PF01467 Cytidylyltransferase-like AFMDGAFA_00975 PF00578 AhpC/TSA family AFMDGAFA_00978 PF06508 Queuosine biosynthesis protein QueC AFMDGAFA_00979 PF04055 Radical SAM superfamily AFMDGAFA_00980 PF14602 Hexapeptide repeat of succinyl-transferase AFMDGAFA_00980 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal AFMDGAFA_00982 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFMDGAFA_00982 PF03466 LysR substrate binding domain AFMDGAFA_00983 PF00005 ABC transporter AFMDGAFA_00983 PF12857 TOBE-like domain AFMDGAFA_00984 PF00528 Binding-protein-dependent transport system inner membrane component AFMDGAFA_00985 PF00528 Binding-protein-dependent transport system inner membrane component AFMDGAFA_00988 PF01063 Amino-transferase class IV AFMDGAFA_00989 PF02618 YceG-like family AFMDGAFA_00990 PF02223 Thymidylate kinase AFMDGAFA_00992 PF00890 FAD binding domain AFMDGAFA_00992 PF02910 Fumarate reductase flavoprotein C-term AFMDGAFA_00993 PF13180 PDZ domain AFMDGAFA_00993 PF02163 Peptidase family M50 AFMDGAFA_00995 PF13302 Acetyltransferase (GNAT) domain AFMDGAFA_00996 PF03144 Elongation factor Tu domain 2 AFMDGAFA_00996 PF06421 GTP-binding protein LepA C-terminus AFMDGAFA_00996 PF00009 Elongation factor Tu GTP binding domain AFMDGAFA_00996 PF00679 Elongation factor G C-terminus AFMDGAFA_00997 PF10502 Signal peptidase, peptidase S26 AFMDGAFA_00999 PF00035 Double-stranded RNA binding motif AFMDGAFA_00999 PF14622 Ribonuclease-III-like AFMDGAFA_01000 PF07650 KH domain AFMDGAFA_01000 PF01926 50S ribosome-binding GTPase AFMDGAFA_01002 PF02565 Recombination protein O C terminal AFMDGAFA_01002 PF11967 Recombination protein O N terminal AFMDGAFA_01003 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AFMDGAFA_01004 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) AFMDGAFA_01005 PF00106 short chain dehydrogenase AFMDGAFA_01008 PF03061 Thioesterase superfamily AFMDGAFA_01010 PF00012 Hsp70 protein AFMDGAFA_01012 PF00155 Aminotransferase class I and II AFMDGAFA_01014 PF17151 Periplasmic sensor domain AFMDGAFA_01014 PF00990 Diguanylate cyclase, GGDEF domain AFMDGAFA_01016 PF12344 Ultra-violet resistance protein B AFMDGAFA_01016 PF02151 UvrB/uvrC motif AFMDGAFA_01016 PF17757 UvrB interaction domain AFMDGAFA_01016 PF00271 Helicase conserved C-terminal domain AFMDGAFA_01016 PF04851 Type III restriction enzyme, res subunit AFMDGAFA_01017 PF08212 Lipocalin-like domain AFMDGAFA_01018 PF00892 EamA-like transporter family AFMDGAFA_01019 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AFMDGAFA_01019 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AFMDGAFA_01022 PF01926 50S ribosome-binding GTPase AFMDGAFA_01022 PF01018 GTP1/OBG AFMDGAFA_01023 PF01472 PUA domain AFMDGAFA_01023 PF00696 Amino acid kinase family AFMDGAFA_01025 PF07759 Protein of unknown function (DUF1615) AFMDGAFA_01026 PF01207 Dihydrouridine synthase (Dus) AFMDGAFA_01027 PF03060 Nitronate monooxygenase AFMDGAFA_01030 PF02350 UDP-N-acetylglucosamine 2-epimerase AFMDGAFA_01036 PF00875 DNA photolyase AFMDGAFA_01036 PF03441 FAD binding domain of DNA photolyase AFMDGAFA_01037 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AFMDGAFA_01038 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFMDGAFA_01039 PF07943 Penicillin-binding protein 5, C-terminal domain AFMDGAFA_01039 PF00768 D-alanyl-D-alanine carboxypeptidase AFMDGAFA_01041 PF03971 Monomeric isocitrate dehydrogenase AFMDGAFA_01042 PF00849 RNA pseudouridylate synthase AFMDGAFA_01043 PF00180 Isocitrate/isopropylmalate dehydrogenase AFMDGAFA_01047 PF06779 Uncharacterised MFS-type transporter YbfB AFMDGAFA_01048 PF03466 LysR substrate binding domain AFMDGAFA_01048 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFMDGAFA_01049 PF00375 Sodium:dicarboxylate symporter family AFMDGAFA_01050 PF02567 Phenazine biosynthesis-like protein AFMDGAFA_01051 PF00675 Insulinase (Peptidase family M16) AFMDGAFA_01051 PF05193 Peptidase M16 inactive domain AFMDGAFA_01056 PF02581 Thiamine monophosphate synthase AFMDGAFA_01057 PF00202 Aminotransferase class-III AFMDGAFA_01059 PF00849 RNA pseudouridylate synthase AFMDGAFA_01060 PF00271 Helicase conserved C-terminal domain AFMDGAFA_01060 PF18337 RapA N-terminal Tudor like domain AFMDGAFA_01060 PF18339 RapA N-terminal Tudor like domain 1 AFMDGAFA_01060 PF00176 SNF2-related domain AFMDGAFA_01060 PF12137 RNA polymerase recycling family C-terminal AFMDGAFA_01062 PF00440 Bacterial regulatory proteins, tetR family AFMDGAFA_01063 PF00970 Oxidoreductase FAD-binding domain AFMDGAFA_01063 PF00111 2Fe-2S iron-sulfur cluster binding domain AFMDGAFA_01063 PF00175 Oxidoreductase NAD-binding domain AFMDGAFA_01064 PF00487 Fatty acid desaturase AFMDGAFA_01065 PF02525 Flavodoxin-like fold AFMDGAFA_01066 PF03466 LysR substrate binding domain AFMDGAFA_01066 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFMDGAFA_01068 PF00202 Aminotransferase class-III AFMDGAFA_01069 PF00282 Pyridoxal-dependent decarboxylase conserved domain AFMDGAFA_01070 PF00171 Aldehyde dehydrogenase family AFMDGAFA_01071 PF01037 Lrp/AsnC ligand binding domain AFMDGAFA_01072 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFMDGAFA_01072 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AFMDGAFA_01072 PF00205 Thiamine pyrophosphate enzyme, central domain AFMDGAFA_01073 PF00324 Amino acid permease AFMDGAFA_01074 PF12849 PBP superfamily domain AFMDGAFA_01075 PF00528 Binding-protein-dependent transport system inner membrane component AFMDGAFA_01076 PF00528 Binding-protein-dependent transport system inner membrane component AFMDGAFA_01077 PF00005 ABC transporter AFMDGAFA_01078 PF08496 Peptidase family S49 N-terminal AFMDGAFA_01078 PF01343 Peptidase family S49 AFMDGAFA_01081 PF00206 Lyase AFMDGAFA_01081 PF08328 Adenylosuccinate lyase C-terminal AFMDGAFA_01082 PF04356 Protein of unknown function (DUF489) AFMDGAFA_01083 PF20258 Aminomethyltransferase beta-barrel domain AFMDGAFA_01083 PF20259 tRNA methyl transferase PRC-barrel domain AFMDGAFA_01085 PF00132 Bacterial transferase hexapeptide (six repeats) AFMDGAFA_01086 PF07943 Penicillin-binding protein 5, C-terminal domain AFMDGAFA_01086 PF00768 D-alanyl-D-alanine carboxypeptidase AFMDGAFA_01089 PF01975 Survival protein SurE AFMDGAFA_01090 PF01476 LysM domain AFMDGAFA_01090 PF01551 Peptidase family M23 AFMDGAFA_01091 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFMDGAFA_01091 PF03466 LysR substrate binding domain AFMDGAFA_01092 PF13654 LonB-like, AAA domain AFMDGAFA_01092 PF05362 Lon protease (S16) C-terminal proteolytic domain AFMDGAFA_01093 PF07690 Major Facilitator Superfamily AFMDGAFA_01094 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFMDGAFA_01095 PF13593 SBF-like CPA transporter family (DUF4137) AFMDGAFA_01096 PF01197 Ribosomal protein L31 AFMDGAFA_01097 PF12792 CSS motif domain associated with EAL AFMDGAFA_01097 PF00563 EAL domain AFMDGAFA_01099 PF04055 Radical SAM superfamily AFMDGAFA_01100 PF01132 Elongation factor P (EF-P) OB domain AFMDGAFA_01100 PF08207 Elongation factor P (EF-P) KOW-like domain AFMDGAFA_01100 PF09285 Elongation factor P, C-terminal AFMDGAFA_01101 PF02554 Carbon starvation protein CstA AFMDGAFA_01101 PF13722 5TM C-terminal transporter carbon starvation CstA AFMDGAFA_01102 PF04328 Selenoprotein, putative AFMDGAFA_01111 PF00857 Isochorismatase family AFMDGAFA_01112 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFMDGAFA_01112 PF03466 LysR substrate binding domain AFMDGAFA_01114 PF00743 Flavin-binding monooxygenase-like AFMDGAFA_01115 PF00561 alpha/beta hydrolase fold AFMDGAFA_01117 PF01370 NAD dependent epimerase/dehydratase family AFMDGAFA_01118 PF12833 Helix-turn-helix domain AFMDGAFA_01118 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term AFMDGAFA_01119 PF00994 Probable molybdopterin binding domain AFMDGAFA_01119 PF03454 MoeA C-terminal region (domain IV) AFMDGAFA_01119 PF03453 MoeA N-terminal region (domain I and II) AFMDGAFA_01119 PF12727 PBP superfamily domain AFMDGAFA_01124 PF02678 Pirin AFMDGAFA_01124 PF17954 Quercetinase C-terminal cupin domain AFMDGAFA_01125 PF00291 Pyridoxal-phosphate dependent enzyme AFMDGAFA_01126 PF08348 YheO-like PAS domain AFMDGAFA_01126 PF13309 HTH domain AFMDGAFA_01128 PF13193 AMP-binding enzyme C-terminal domain AFMDGAFA_01128 PF00501 AMP-binding enzyme AFMDGAFA_01128 PF00668 Condensation domain AFMDGAFA_01129 PF00668 Condensation domain AFMDGAFA_01129 PF00501 AMP-binding enzyme AFMDGAFA_01129 PF00550 Phosphopantetheine attachment site AFMDGAFA_01129 PF00975 Thioesterase domain AFMDGAFA_01129 PF13193 AMP-binding enzyme C-terminal domain AFMDGAFA_01132 PF01032 FecCD transport family AFMDGAFA_01133 PF01032 FecCD transport family AFMDGAFA_01134 PF00005 ABC transporter AFMDGAFA_01135 PF01497 Periplasmic binding protein AFMDGAFA_01136 PF07715 TonB-dependent Receptor Plug Domain AFMDGAFA_01136 PF00593 TonB dependent receptor AFMDGAFA_01137 PF13434 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase AFMDGAFA_01138 PF13193 AMP-binding enzyme C-terminal domain AFMDGAFA_01138 PF00668 Condensation domain AFMDGAFA_01138 PF00501 AMP-binding enzyme AFMDGAFA_01139 PF00550 Phosphopantetheine attachment site AFMDGAFA_01139 PF13193 AMP-binding enzyme C-terminal domain AFMDGAFA_01139 PF00501 AMP-binding enzyme AFMDGAFA_01140 PF00857 Isochorismatase family AFMDGAFA_01140 PF00550 Phosphopantetheine attachment site AFMDGAFA_01141 PF00282 Pyridoxal-dependent decarboxylase conserved domain AFMDGAFA_01143 PF00664 ABC transporter transmembrane region AFMDGAFA_01143 PF00005 ABC transporter AFMDGAFA_01144 PF00005 ABC transporter AFMDGAFA_01145 PF00975 Thioesterase domain AFMDGAFA_01147 PF00425 chorismate binding enzyme AFMDGAFA_01149 PF01208 Uroporphyrinogen decarboxylase (URO-D) AFMDGAFA_01150 PF05675 Protein of unknown function (DUF817) AFMDGAFA_01154 PF00144 Beta-lactamase AFMDGAFA_01155 PF01227 GTP cyclohydrolase I AFMDGAFA_01156 PF01799 [2Fe-2S] binding domain AFMDGAFA_01156 PF00111 2Fe-2S iron-sulfur cluster binding domain AFMDGAFA_01157 PF20256 Molybdopterin cofactor-binding domain AFMDGAFA_01157 PF02738 Molybdopterin cofactor-binding domain AFMDGAFA_01157 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AFMDGAFA_01160 PF00218 Indole-3-glycerol phosphate synthase AFMDGAFA_01161 PF00591 Glycosyl transferase family, a/b domain AFMDGAFA_01161 PF02885 Glycosyl transferase family, helical bundle domain AFMDGAFA_01162 PF07715 TonB-dependent Receptor Plug Domain AFMDGAFA_01162 PF00593 TonB dependent receptor AFMDGAFA_01163 PF11838 ERAP1-like C-terminal domain AFMDGAFA_01163 PF01433 Peptidase family M1 domain AFMDGAFA_01163 PF17900 Peptidase M1 N-terminal domain AFMDGAFA_01164 PF00117 Glutamine amidotransferase class-I AFMDGAFA_01165 PF01321 Creatinase/Prolidase N-terminal domain AFMDGAFA_01165 PF00557 Metallopeptidase family M24 AFMDGAFA_01166 PF00854 POT family AFMDGAFA_01167 PF00120 Glutamine synthetase, catalytic domain AFMDGAFA_01167 PF03951 Glutamine synthetase, beta-Grasp domain AFMDGAFA_01168 PF04345 Chorismate lyase AFMDGAFA_01169 PF01040 UbiA prenyltransferase family AFMDGAFA_01176 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AFMDGAFA_01176 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AFMDGAFA_01177 PF01784 NIF3 (NGG1p interacting factor 3) AFMDGAFA_01178 PF02163 Peptidase family M50 AFMDGAFA_01178 PF13180 PDZ domain AFMDGAFA_01179 PF01743 Poly A polymerase head domain AFMDGAFA_01179 PF12627 Probable RNA and SrmB- binding site of polymerase A AFMDGAFA_01180 PF03949 Malic enzyme, NAD binding domain AFMDGAFA_01180 PF01515 Phosphate acetyl/butaryl transferase AFMDGAFA_01180 PF00390 Malic enzyme, N-terminal domain AFMDGAFA_01181 PF03707 Bacterial signalling protein N terminal repeat AFMDGAFA_01181 PF00990 Diguanylate cyclase, GGDEF domain AFMDGAFA_01181 PF00563 EAL domain AFMDGAFA_01182 PF20260 RNA methyltransferase PUA domain AFMDGAFA_01182 PF04452 RNA methyltransferase domain AFMDGAFA_01183 PF02219 Methylenetetrahydrofolate reductase AFMDGAFA_01184 PF05221 S-adenosyl-L-homocysteine hydrolase AFMDGAFA_01184 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AFMDGAFA_01187 PF09317 Acyl-CoA dehydrogenase, C-terminal, bacterial type AFMDGAFA_01187 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFMDGAFA_01187 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFMDGAFA_01188 PF04055 Radical SAM superfamily AFMDGAFA_01189 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFMDGAFA_01189 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AFMDGAFA_01192 PF07690 Major Facilitator Superfamily AFMDGAFA_01194 PF00557 Metallopeptidase family M24 AFMDGAFA_01196 PF00318 Ribosomal protein S2 AFMDGAFA_01197 PF00889 Elongation factor TS AFMDGAFA_01199 PF12833 Helix-turn-helix domain AFMDGAFA_01204 PF03330 Lytic transglycolase AFMDGAFA_01204 PF05036 SPOR domain AFMDGAFA_01205 PF13406 Transglycosylase SLT domain AFMDGAFA_01206 PF01098 Cell cycle protein AFMDGAFA_01208 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term AFMDGAFA_01208 PF14489 QueF-like protein AFMDGAFA_01209 PF01061 ABC-2 type transporter AFMDGAFA_01210 PF00005 ABC transporter AFMDGAFA_01215 PF00464 Serine hydroxymethyltransferase AFMDGAFA_01216 PF02321 Outer membrane efflux protein AFMDGAFA_01217 PF00873 AcrB/AcrD/AcrF family AFMDGAFA_01218 PF13533 Biotin-lipoyl like AFMDGAFA_01219 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFMDGAFA_01219 PF03466 LysR substrate binding domain AFMDGAFA_01220 PF00497 Bacterial extracellular solute-binding proteins, family 3 AFMDGAFA_01221 PF00528 Binding-protein-dependent transport system inner membrane component AFMDGAFA_01222 PF00528 Binding-protein-dependent transport system inner membrane component AFMDGAFA_01223 PF00005 ABC transporter AFMDGAFA_01224 PF00893 Small Multidrug Resistance protein AFMDGAFA_01225 PF00037 4Fe-4S binding domain AFMDGAFA_01226 PF16325 Peptidase family U32 C-terminal domain AFMDGAFA_01226 PF01136 Peptidase family U32 AFMDGAFA_01227 PF00155 Aminotransferase class I and II AFMDGAFA_01227 PF00392 Bacterial regulatory proteins, gntR family AFMDGAFA_01228 PF02567 Phenazine biosynthesis-like protein AFMDGAFA_01229 PF00970 Oxidoreductase FAD-binding domain AFMDGAFA_01229 PF00175 Oxidoreductase NAD-binding domain AFMDGAFA_01230 PF01980 tRNA-methyltransferase O AFMDGAFA_01230 PF18389 TrmO C-terminal domain AFMDGAFA_01232 PF00437 Type II/IV secretion system protein AFMDGAFA_01232 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AFMDGAFA_01234 PF00072 Response regulator receiver domain AFMDGAFA_01234 PF00486 Transcriptional regulatory protein, C terminal AFMDGAFA_01235 PF00512 His Kinase A (phospho-acceptor) domain AFMDGAFA_01235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFMDGAFA_01235 PF08521 Two-component sensor kinase N-terminal AFMDGAFA_01237 PF00293 NUDIX domain AFMDGAFA_01239 PF00912 Transglycosylase AFMDGAFA_01239 PF00905 Penicillin binding protein transpeptidase domain AFMDGAFA_01239 PF14814 Bifunctional transglycosylase second domain AFMDGAFA_01240 PF01513 ATP-NAD kinase N-terminal domain AFMDGAFA_01241 PF07023 Protein of unknown function (DUF1315) AFMDGAFA_01242 PF02885 Glycosyl transferase family, helical bundle domain AFMDGAFA_01242 PF00591 Glycosyl transferase family, a/b domain AFMDGAFA_01243 PF00375 Sodium:dicarboxylate symporter family AFMDGAFA_01244 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFMDGAFA_01244 PF02770 Acyl-CoA dehydrogenase, middle domain AFMDGAFA_01244 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFMDGAFA_01245 PF00756 Putative esterase AFMDGAFA_01246 PF00800 Prephenate dehydratase AFMDGAFA_01246 PF01817 Chorismate mutase type II AFMDGAFA_01246 PF01842 ACT domain AFMDGAFA_01247 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AFMDGAFA_01249 PF01546 Peptidase family M20/M25/M40 AFMDGAFA_01249 PF07687 Peptidase dimerisation domain AFMDGAFA_01250 PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain AFMDGAFA_01250 PF01137 RNA 3'-terminal phosphate cyclase AFMDGAFA_01253 PF01139 tRNA-splicing ligase RtcB AFMDGAFA_01254 PF00753 Metallo-beta-lactamase superfamily AFMDGAFA_01255 PF00158 Sigma-54 interaction domain AFMDGAFA_01255 PF06956 Regulator of RNA terminal phosphate cyclase AFMDGAFA_01257 PF03883 Peroxide stress protein YaaA AFMDGAFA_01259 PF05690 Thiazole biosynthesis protein ThiG AFMDGAFA_01261 PF04241 Protein of unknown function (DUF423) AFMDGAFA_01262 PF00140 Sigma-70 factor, region 1.2 AFMDGAFA_01262 PF04545 Sigma-70, region 4 AFMDGAFA_01262 PF04542 Sigma-70 region 2 AFMDGAFA_01264 PF00313 'Cold-shock' DNA-binding domain AFMDGAFA_01265 PF00271 Helicase conserved C-terminal domain AFMDGAFA_01265 PF00270 DEAD/DEAH box helicase AFMDGAFA_01267 PF00881 Nitroreductase family AFMDGAFA_01268 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AFMDGAFA_01268 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AFMDGAFA_01272 PF01180 Dihydroorotate dehydrogenase AFMDGAFA_01273 PF02674 Colicin V production protein AFMDGAFA_01274 PF00156 Phosphoribosyl transferase domain AFMDGAFA_01277 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AFMDGAFA_01277 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AFMDGAFA_01278 PF01435 Peptidase family M48 AFMDGAFA_01279 PF09424 Yqey-like protein AFMDGAFA_01280 PF01165 Ribosomal protein S21 AFMDGAFA_01281 PF00814 tRNA N6-adenosine threonylcarbamoyltransferase AFMDGAFA_01286 PF03793 PASTA domain AFMDGAFA_01286 PF00069 Protein kinase domain AFMDGAFA_01291 PF03466 LysR substrate binding domain AFMDGAFA_01291 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFMDGAFA_01292 PF00202 Aminotransferase class-III AFMDGAFA_01293 PF00171 Aldehyde dehydrogenase family AFMDGAFA_01294 PF00324 Amino acid permease AFMDGAFA_01300 PF04076 Bacterial OB fold (BOF) protein AFMDGAFA_01305 PF00561 alpha/beta hydrolase fold AFMDGAFA_01306 PF03616 Sodium/glutamate symporter AFMDGAFA_01308 PF07729 FCD domain AFMDGAFA_01308 PF00392 Bacterial regulatory proteins, gntR family AFMDGAFA_01318 PF00083 Sugar (and other) transporter AFMDGAFA_01318 PF08946 Osmosensory transporter coiled coil AFMDGAFA_01319 PF00293 NUDIX domain AFMDGAFA_01326 PF04403 Paraquat-inducible protein A AFMDGAFA_01327 PF02470 MlaD protein AFMDGAFA_01330 PF01177 Asp/Glu/Hydantoin racemase AFMDGAFA_01331 PF00892 EamA-like transporter family AFMDGAFA_01332 PF07995 Glucose / Sorbosone dehydrogenase AFMDGAFA_01336 PF00375 Sodium:dicarboxylate symporter family AFMDGAFA_01338 PF16123 Hydroxyacylglutathione hydrolase C-terminus AFMDGAFA_01338 PF00753 Metallo-beta-lactamase superfamily AFMDGAFA_01339 PF00528 Binding-protein-dependent transport system inner membrane component AFMDGAFA_01340 PF00005 ABC transporter AFMDGAFA_01340 PF09383 NIL domain AFMDGAFA_01341 PF03180 NlpA lipoprotein AFMDGAFA_01342 PF02843 Phosphoribosylglycinamide synthetase, C domain AFMDGAFA_01342 PF02844 Phosphoribosylglycinamide synthetase, N domain AFMDGAFA_01342 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AFMDGAFA_01343 PF02142 MGS-like domain AFMDGAFA_01343 PF01808 AICARFT/IMPCHase bienzyme AFMDGAFA_01344 PF02954 Bacterial regulatory protein, Fis family AFMDGAFA_01348 PF01134 Glucose inhibited division protein A AFMDGAFA_01348 PF13932 tRNA modifying enzyme MnmG/GidA C-terminal domain AFMDGAFA_01350 PF14403 Circularly permuted ATP-grasp type 2 AFMDGAFA_01352 PF08379 Bacterial transglutaminase-like N-terminal region AFMDGAFA_01352 PF01841 Transglutaminase-like superfamily AFMDGAFA_01354 PF00842 Alanine racemase, C-terminal domain AFMDGAFA_01354 PF01168 Alanine racemase, N-terminal domain AFMDGAFA_01355 PF00772 DnaB-like helicase N terminal domain AFMDGAFA_01355 PF03796 DnaB-like helicase C terminal domain AFMDGAFA_01356 PF03948 Ribosomal protein L9, C-terminal domain AFMDGAFA_01356 PF01281 Ribosomal protein L9, N-terminal domain AFMDGAFA_01357 PF01084 Ribosomal protein S18 AFMDGAFA_01358 PF01250 Ribosomal protein S6 AFMDGAFA_01359 PF01040 UbiA prenyltransferase family AFMDGAFA_01360 PF03626 Prokaryotic Cytochrome C oxidase subunit IV AFMDGAFA_01361 PF00510 Cytochrome c oxidase subunit III AFMDGAFA_01362 PF00115 Cytochrome C and Quinol oxidase polypeptide I AFMDGAFA_01363 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AFMDGAFA_01363 PF06481 COX Aromatic Rich Motif AFMDGAFA_01366 PF02896 PEP-utilising enzyme, PEP-binding domain AFMDGAFA_01366 PF01326 Pyruvate phosphate dikinase, AMP/ATP-binding domain AFMDGAFA_01366 PF00391 PEP-utilising enzyme, mobile domain AFMDGAFA_01367 PF03618 Kinase/pyrophosphorylase AFMDGAFA_01369 PF14883 Hypothetical glycosyl hydrolase family 13 AFMDGAFA_01369 PF01522 Polysaccharide deacetylase AFMDGAFA_01370 PF00535 Glycosyl transferase family 2 AFMDGAFA_01371 PF13994 PgaD-like protein AFMDGAFA_01373 PF00296 Luciferase-like monooxygenase AFMDGAFA_01376 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFMDGAFA_01376 PF03466 LysR substrate binding domain AFMDGAFA_01378 PF00472 RF-1 domain AFMDGAFA_01378 PF03462 PCRF domain AFMDGAFA_01379 PF17827 PrmC N-terminal domain AFMDGAFA_01379 PF13847 Methyltransferase domain AFMDGAFA_01380 PF12833 Helix-turn-helix domain AFMDGAFA_01381 PF00106 short chain dehydrogenase AFMDGAFA_01382 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFMDGAFA_01382 PF02770 Acyl-CoA dehydrogenase, middle domain AFMDGAFA_01382 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFMDGAFA_01383 PF00501 AMP-binding enzyme AFMDGAFA_01383 PF13193 AMP-binding enzyme C-terminal domain AFMDGAFA_01384 PF01613 Flavin reductase like domain AFMDGAFA_01385 PF00899 ThiF family AFMDGAFA_01386 PF03109 ABC1 atypical kinase-like domain AFMDGAFA_01387 PF02152 Dihydroneopterin aldolase AFMDGAFA_01390 PF03814 Potassium-transporting ATPase A subunit AFMDGAFA_01392 PF02669 K+-transporting ATPase, c chain AFMDGAFA_01393 PF00512 His Kinase A (phospho-acceptor) domain AFMDGAFA_01393 PF02702 Osmosensitive K+ channel His kinase sensor domain AFMDGAFA_01393 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFMDGAFA_01393 PF13493 Domain of unknown function (DUF4118) AFMDGAFA_01394 PF00486 Transcriptional regulatory protein, C terminal AFMDGAFA_01394 PF00072 Response regulator receiver domain AFMDGAFA_01395 PF00120 Glutamine synthetase, catalytic domain AFMDGAFA_01398 PF07690 Major Facilitator Superfamily AFMDGAFA_01399 PF17243 POTRA domain TamA domain 1 AFMDGAFA_01399 PF07244 Surface antigen variable number repeat AFMDGAFA_01399 PF01103 Omp85 superfamily domain AFMDGAFA_01402 PF11791 Aconitate B N-terminal domain AFMDGAFA_01402 PF06434 Aconitate hydratase 2 N-terminus AFMDGAFA_01402 PF00330 Aconitase family (aconitate hydratase) AFMDGAFA_01404 PF00520 Ion transport protein AFMDGAFA_01404 PF00027 Cyclic nucleotide-binding domain AFMDGAFA_01405 PF07690 Major Facilitator Superfamily AFMDGAFA_01408 PF03466 LysR substrate binding domain AFMDGAFA_01408 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFMDGAFA_01409 PF04284 Protein of unknown function (DUF441) AFMDGAFA_01411 PF00849 RNA pseudouridylate synthase AFMDGAFA_01411 PF01479 S4 domain AFMDGAFA_01414 PF00849 RNA pseudouridylate synthase AFMDGAFA_01414 PF01479 S4 domain AFMDGAFA_01415 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AFMDGAFA_01416 PF01119 DNA mismatch repair protein, C-terminal domain AFMDGAFA_01416 PF08676 MutL C terminal dimerisation domain AFMDGAFA_01418 PF17209 Hfq protein AFMDGAFA_01420 PF00881 Nitroreductase family AFMDGAFA_01422 PF00149 Calcineurin-like phosphoesterase AFMDGAFA_01423 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AFMDGAFA_01424 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain AFMDGAFA_01424 PF00749 tRNA synthetases class I (E and Q), catalytic domain AFMDGAFA_01425 PF02540 NAD synthase AFMDGAFA_01425 PF00117 Glutamine amidotransferase class-I AFMDGAFA_01425 PF00958 GMP synthase C terminal domain AFMDGAFA_01426 PF05985 Ethanolamine ammonia-lyase light chain (EutC) AFMDGAFA_01427 PF06751 Ethanolamine ammonia lyase large subunit (EutB) AFMDGAFA_01428 PF13520 Amino acid permease AFMDGAFA_01429 PF00171 Aldehyde dehydrogenase family AFMDGAFA_01432 PF00465 Iron-containing alcohol dehydrogenase AFMDGAFA_01433 PF05970 PIF1-like helicase AFMDGAFA_01433 PF14493 Helix-turn-helix domain AFMDGAFA_01435 PF02110 Hydroxyethylthiazole kinase family AFMDGAFA_01438 PF11940 Domain of unknown function (DUF3458) Ig-like fold AFMDGAFA_01438 PF17900 Peptidase M1 N-terminal domain AFMDGAFA_01438 PF17432 Domain of unknown function (DUF3458_C) ARM repeats AFMDGAFA_01438 PF01433 Peptidase family M1 domain AFMDGAFA_01441 PF13954 PapC N-terminal domain AFMDGAFA_01441 PF13953 PapC C-terminal domain AFMDGAFA_01441 PF00577 Outer membrane usher protein AFMDGAFA_01446 PF01817 Chorismate mutase type II AFMDGAFA_01447 PF01037 Lrp/AsnC ligand binding domain AFMDGAFA_01450 PF00440 Bacterial regulatory proteins, tetR family AFMDGAFA_01451 PF07715 TonB-dependent Receptor Plug Domain AFMDGAFA_01451 PF00593 TonB dependent receptor AFMDGAFA_01452 PF00924 Mechanosensitive ion channel AFMDGAFA_01458 PF07715 TonB-dependent Receptor Plug Domain AFMDGAFA_01458 PF00593 TonB dependent receptor AFMDGAFA_01462 PF00005 ABC transporter AFMDGAFA_01462 PF12848 ABC transporter AFMDGAFA_01463 PF00582 Universal stress protein family AFMDGAFA_01468 PF00689 Cation transporting ATPase, C-terminus AFMDGAFA_01468 PF00690 Cation transporter/ATPase, N-terminus AFMDGAFA_01469 PF02308 MgtC family AFMDGAFA_01470 PF03594 Benzoate membrane transport protein AFMDGAFA_01471 PF01037 Lrp/AsnC ligand binding domain AFMDGAFA_01472 PF01810 LysE type translocator AFMDGAFA_01473 PF00923 Transaldolase/Fructose-6-phosphate aldolase AFMDGAFA_01474 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFMDGAFA_01474 PF03466 LysR substrate binding domain AFMDGAFA_01475 PF05232 Chlorhexidine efflux transporter AFMDGAFA_01476 PF02803 Thiolase, C-terminal domain AFMDGAFA_01476 PF00108 Thiolase, N-terminal domain AFMDGAFA_01478 PF01575 MaoC like domain AFMDGAFA_01479 PF00144 Beta-lactamase AFMDGAFA_01481 PF07690 Major Facilitator Superfamily AFMDGAFA_01482 PF12169 DNA polymerase III subunits gamma and tau domain III AFMDGAFA_01482 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding AFMDGAFA_01482 PF12170 DNA polymerase III tau subunit V interacting with alpha AFMDGAFA_01484 PF05506 Bacterial phospholipase C, C-terminal domain AFMDGAFA_01484 PF04185 Phosphoesterase family AFMDGAFA_01485 PF03061 Thioesterase superfamily AFMDGAFA_01486 PF00465 Iron-containing alcohol dehydrogenase AFMDGAFA_01488 PF01451 Low molecular weight phosphotyrosine protein phosphatase AFMDGAFA_01489 PF01565 FAD binding domain AFMDGAFA_01489 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AFMDGAFA_01492 PF01645 Conserved region in glutamate synthase AFMDGAFA_01513 PF00145 C-5 cytosine-specific DNA methylase AFMDGAFA_01523 PF10548 P22AR C-terminal domain AFMDGAFA_01523 PF02498 BRO family, N-terminal domain AFMDGAFA_01551 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system AFMDGAFA_01554 PF06791 Prophage tail length tape measure protein AFMDGAFA_01554 PF09718 Lambda phage tail tape-measure protein (Tape_meas_lam_C) AFMDGAFA_01564 PF13438 Domain of unknown function (DUF4113) AFMDGAFA_01564 PF00817 impB/mucB/samB family AFMDGAFA_01564 PF11799 impB/mucB/samB family C-terminal domain AFMDGAFA_01564 PF11798 IMS family HHH motif AFMDGAFA_01567 PF12832 MFS_1 like family AFMDGAFA_01569 PF02785 Biotin carboxylase C-terminal domain AFMDGAFA_01569 PF00289 Biotin carboxylase, N-terminal domain AFMDGAFA_01569 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AFMDGAFA_01570 PF00364 Biotin-requiring enzyme AFMDGAFA_01571 PF01220 Dehydroquinase class II AFMDGAFA_01572 PF11799 impB/mucB/samB family C-terminal domain AFMDGAFA_01572 PF00817 impB/mucB/samB family AFMDGAFA_01572 PF13438 Domain of unknown function (DUF4113) AFMDGAFA_01573 PF00005 ABC transporter AFMDGAFA_01574 PF00072 Response regulator receiver domain AFMDGAFA_01574 PF00486 Transcriptional regulatory protein, C terminal AFMDGAFA_01576 PF13806 Rieske-like [2Fe-2S] domain AFMDGAFA_01576 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFMDGAFA_01576 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AFMDGAFA_01576 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AFMDGAFA_01576 PF04324 BFD-like [2Fe-2S] binding domain AFMDGAFA_01576 PF18267 Rubredoxin NAD+ reductase C-terminal domain AFMDGAFA_01577 PF04324 BFD-like [2Fe-2S] binding domain AFMDGAFA_01577 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AFMDGAFA_01577 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFMDGAFA_01577 PF18267 Rubredoxin NAD+ reductase C-terminal domain AFMDGAFA_01577 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AFMDGAFA_01578 PF01568 Molydopterin dinucleotide binding domain AFMDGAFA_01578 PF04324 BFD-like [2Fe-2S] binding domain AFMDGAFA_01578 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AFMDGAFA_01578 PF00384 Molybdopterin oxidoreductase AFMDGAFA_01579 PF12804 MobA-like NTP transferase domain AFMDGAFA_01580 PF00384 Molybdopterin oxidoreductase AFMDGAFA_01580 PF01568 Molydopterin dinucleotide binding domain AFMDGAFA_01580 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AFMDGAFA_01581 PF06463 Molybdenum Cofactor Synthesis C AFMDGAFA_01581 PF04055 Radical SAM superfamily AFMDGAFA_01583 PF02391 MoaE protein AFMDGAFA_01584 PF01967 MoaC family AFMDGAFA_01584 PF00994 Probable molybdopterin binding domain AFMDGAFA_01585 PF00994 Probable molybdopterin binding domain AFMDGAFA_01585 PF03453 MoeA N-terminal region (domain I and II) AFMDGAFA_01585 PF03454 MoeA C-terminal region (domain IV) AFMDGAFA_01586 PF01638 HxlR-like helix-turn-helix AFMDGAFA_01587 PF00392 Bacterial regulatory proteins, gntR family AFMDGAFA_01587 PF00155 Aminotransferase class I and II AFMDGAFA_01588 PF00892 EamA-like transporter family AFMDGAFA_01592 PF02635 DsrE/DsrF-like family AFMDGAFA_01593 PF16363 GDP-mannose 4,6 dehydratase AFMDGAFA_01594 PF00206 Lyase AFMDGAFA_01594 PF10415 Fumarase C C-terminus AFMDGAFA_01599 PF01266 FAD dependent oxidoreductase AFMDGAFA_01601 PF02542 YgbB family AFMDGAFA_01603 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AFMDGAFA_01603 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AFMDGAFA_01604 PF00440 Bacterial regulatory proteins, tetR family AFMDGAFA_01605 PF02954 Bacterial regulatory protein, Fis family AFMDGAFA_01605 PF00072 Response regulator receiver domain AFMDGAFA_01605 PF00158 Sigma-54 interaction domain AFMDGAFA_01606 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFMDGAFA_01606 PF00512 His Kinase A (phospho-acceptor) domain AFMDGAFA_01606 PF00989 PAS fold AFMDGAFA_01607 PF00919 Uncharacterized protein family UPF0004 AFMDGAFA_01607 PF18693 TRAM domain AFMDGAFA_01607 PF04055 Radical SAM superfamily AFMDGAFA_01608 PF00696 Amino acid kinase family AFMDGAFA_01609 PF01765 Ribosome recycling factor AFMDGAFA_01610 PF01255 Putative undecaprenyl diphosphate synthase AFMDGAFA_01612 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AFMDGAFA_01612 PF13288 DXP reductoisomerase C-terminal domain AFMDGAFA_01612 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AFMDGAFA_01613 PF13180 PDZ domain AFMDGAFA_01613 PF17820 PDZ domain AFMDGAFA_01613 PF02163 Peptidase family M50 AFMDGAFA_01614 PF01103 Omp85 superfamily domain AFMDGAFA_01614 PF07244 Surface antigen variable number repeat AFMDGAFA_01616 PF00132 Bacterial transferase hexapeptide (six repeats) AFMDGAFA_01616 PF14602 Hexapeptide repeat of succinyl-transferase AFMDGAFA_01616 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD AFMDGAFA_01617 PF07977 FabA-like domain AFMDGAFA_01618 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AFMDGAFA_01618 PF00132 Bacterial transferase hexapeptide (six repeats) AFMDGAFA_01621 PF02631 RecX family AFMDGAFA_01622 PF00154 recA bacterial DNA recombination protein AFMDGAFA_01623 PF01479 S4 domain AFMDGAFA_01624 PF13419 Haloacid dehalogenase-like hydrolase AFMDGAFA_01629 PF01037 Lrp/AsnC ligand binding domain AFMDGAFA_01630 PF00266 Aminotransferase class-V AFMDGAFA_01631 PF00324 Amino acid permease AFMDGAFA_01633 PF00082 Subtilase family AFMDGAFA_01633 PF05922 Peptidase inhibitor I9 AFMDGAFA_01634 PF00916 Sulfate permease family AFMDGAFA_01634 PF01740 STAS domain AFMDGAFA_01635 PF02586 SOS response associated peptidase (SRAP) AFMDGAFA_01636 PF07995 Glucose / Sorbosone dehydrogenase AFMDGAFA_01638 PF00563 EAL domain AFMDGAFA_01638 PF00990 Diguanylate cyclase, GGDEF domain AFMDGAFA_01638 PF03707 Bacterial signalling protein N terminal repeat AFMDGAFA_01640 PF01047 MarR family AFMDGAFA_01641 PF02378 Phosphotransferase system, EIIC AFMDGAFA_01641 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AFMDGAFA_01642 PF00294 pfkB family carbohydrate kinase AFMDGAFA_01643 PF00381 PTS HPr component phosphorylation site AFMDGAFA_01643 PF00391 PEP-utilising enzyme, mobile domain AFMDGAFA_01643 PF02896 PEP-utilising enzyme, PEP-binding domain AFMDGAFA_01643 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AFMDGAFA_01643 PF05524 PEP-utilising enzyme, N-terminal AFMDGAFA_01648 PF05525 Branched-chain amino acid transport protein AFMDGAFA_01649 PF00557 Metallopeptidase family M24 AFMDGAFA_01650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFMDGAFA_01650 PF03466 LysR substrate binding domain AFMDGAFA_01652 PF00462 Glutaredoxin AFMDGAFA_01653 PF00202 Aminotransferase class-III AFMDGAFA_01654 PF02195 ParB/Sulfiredoxin domain AFMDGAFA_01654 PF00571 CBS domain AFMDGAFA_01659 PF00448 SRP54-type protein, GTPase domain AFMDGAFA_01659 PF02881 SRP54-type protein, helical bundle domain AFMDGAFA_01661 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) AFMDGAFA_01664 PF08173 Membrane bound YbgT-like protein AFMDGAFA_01665 PF02322 Cytochrome bd terminal oxidase subunit II AFMDGAFA_01666 PF01654 Cytochrome bd terminal oxidase subunit I AFMDGAFA_01668 PF07290 Protein of unknown function (DUF1449) AFMDGAFA_01670 PF00294 pfkB family carbohydrate kinase AFMDGAFA_01671 PF07715 TonB-dependent Receptor Plug Domain AFMDGAFA_01671 PF00593 TonB dependent receptor AFMDGAFA_01672 PF00675 Insulinase (Peptidase family M16) AFMDGAFA_01672 PF08367 Peptidase M16C associated AFMDGAFA_01672 PF05193 Peptidase M16 inactive domain AFMDGAFA_01673 PF02253 Phospholipase A1 AFMDGAFA_01674 PF02386 Cation transport protein AFMDGAFA_01675 PF02080 TrkA-C domain AFMDGAFA_01675 PF02254 TrkA-N domain AFMDGAFA_01676 PF00585 C-terminal regulatory domain of Threonine dehydratase AFMDGAFA_01676 PF00291 Pyridoxal-phosphate dependent enzyme AFMDGAFA_01677 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AFMDGAFA_01680 PF01118 Semialdehyde dehydrogenase, NAD binding domain AFMDGAFA_01680 PF02774 Semialdehyde dehydrogenase, dimerisation domain AFMDGAFA_01682 PF02617 ATP-dependent Clp protease adaptor protein ClpS AFMDGAFA_01683 PF02861 Clp amino terminal domain, pathogenicity island component AFMDGAFA_01683 PF17871 AAA lid domain AFMDGAFA_01683 PF07724 AAA domain (Cdc48 subfamily) AFMDGAFA_01683 PF00004 ATPase family associated with various cellular activities (AAA) AFMDGAFA_01683 PF10431 C-terminal, D2-small domain, of ClpB protein AFMDGAFA_01684 PF02694 Uncharacterised BCR, YnfA/UPF0060 family AFMDGAFA_01685 PF00793 DAHP synthetase I family AFMDGAFA_01688 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AFMDGAFA_01688 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFMDGAFA_01694 PF06418 CTP synthase N-terminus AFMDGAFA_01694 PF00117 Glutamine amidotransferase class-I AFMDGAFA_01695 PF00793 DAHP synthetase I family AFMDGAFA_01696 PF00113 Enolase, C-terminal TIM barrel domain AFMDGAFA_01696 PF03952 Enolase, N-terminal domain AFMDGAFA_01697 PF04239 Protein of unknown function (DUF421) AFMDGAFA_01698 PF04977 Septum formation initiator AFMDGAFA_01699 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AFMDGAFA_01700 PF01144 Coenzyme A transferase AFMDGAFA_01701 PF01144 Coenzyme A transferase AFMDGAFA_01702 PF02803 Thiolase, C-terminal domain AFMDGAFA_01702 PF00108 Thiolase, N-terminal domain AFMDGAFA_01703 PF10397 Adenylosuccinate lyase C-terminus AFMDGAFA_01703 PF00206 Lyase AFMDGAFA_01704 PF00561 alpha/beta hydrolase fold AFMDGAFA_01705 PF07690 Major Facilitator Superfamily AFMDGAFA_01706 PF02627 Carboxymuconolactone decarboxylase family AFMDGAFA_01707 PF00775 Dioxygenase AFMDGAFA_01707 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal AFMDGAFA_01708 PF00775 Dioxygenase AFMDGAFA_01709 PF01487 Type I 3-dehydroquinase AFMDGAFA_01710 PF05048 Periplasmic copper-binding protein (NosD) AFMDGAFA_01711 PF04966 Carbohydrate-selective porin, OprB family AFMDGAFA_01712 PF13360 PQQ-like domain AFMDGAFA_01712 PF01011 PQQ enzyme repeat AFMDGAFA_01714 PF04143 Sulphur transport AFMDGAFA_01716 PF00753 Metallo-beta-lactamase superfamily AFMDGAFA_01717 PF09339 IclR helix-turn-helix domain AFMDGAFA_01717 PF01614 Bacterial transcriptional regulator AFMDGAFA_01718 PF03466 LysR substrate binding domain AFMDGAFA_01718 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFMDGAFA_01719 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFMDGAFA_01719 PF02770 Acyl-CoA dehydrogenase, middle domain AFMDGAFA_01719 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFMDGAFA_01722 PF00106 short chain dehydrogenase AFMDGAFA_01724 PF07690 Major Facilitator Superfamily AFMDGAFA_01725 PF01047 MarR family AFMDGAFA_01726 PF01425 Amidase AFMDGAFA_01727 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFMDGAFA_01727 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AFMDGAFA_01730 PF00355 Rieske [2Fe-2S] domain AFMDGAFA_01730 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AFMDGAFA_01733 PF00111 2Fe-2S iron-sulfur cluster binding domain AFMDGAFA_01733 PF00175 Oxidoreductase NAD-binding domain AFMDGAFA_01734 PF01613 Flavin reductase like domain AFMDGAFA_01735 PF02311 AraC-like ligand binding domain AFMDGAFA_01735 PF12833 Helix-turn-helix domain AFMDGAFA_01736 PF01179 Copper amine oxidase, enzyme domain AFMDGAFA_01736 PF02728 Copper amine oxidase, N3 domain AFMDGAFA_01736 PF02727 Copper amine oxidase, N2 domain AFMDGAFA_01736 PF07833 Copper amine oxidase N-terminal domain AFMDGAFA_01738 PF00171 Aldehyde dehydrogenase family AFMDGAFA_01739 PF01804 Penicillin amidase AFMDGAFA_01740 PF12146 Serine aminopeptidase, S33 AFMDGAFA_01741 PF02803 Thiolase, C-terminal domain AFMDGAFA_01741 PF00108 Thiolase, N-terminal domain AFMDGAFA_01742 PF01144 Coenzyme A transferase AFMDGAFA_01743 PF01144 Coenzyme A transferase AFMDGAFA_01744 PF04444 Catechol dioxygenase N terminus AFMDGAFA_01744 PF00775 Dioxygenase AFMDGAFA_01745 PF02426 Muconolactone delta-isomerase AFMDGAFA_01746 PF13378 Enolase C-terminal domain-like AFMDGAFA_01746 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AFMDGAFA_01747 PF03466 LysR substrate binding domain AFMDGAFA_01747 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFMDGAFA_01749 PF07729 FCD domain AFMDGAFA_01749 PF00392 Bacterial regulatory proteins, gntR family AFMDGAFA_01750 PF00920 Dehydratase family AFMDGAFA_01751 PF07690 Major Facilitator Superfamily AFMDGAFA_01753 PF00171 Aldehyde dehydrogenase family AFMDGAFA_01755 PF00561 alpha/beta hydrolase fold AFMDGAFA_01756 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFMDGAFA_01756 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AFMDGAFA_01757 PF00106 short chain dehydrogenase AFMDGAFA_01758 PF01872 RibD C-terminal domain AFMDGAFA_01760 PF13411 MerR HTH family regulatory protein AFMDGAFA_01762 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFMDGAFA_01764 PF12706 Beta-lactamase superfamily domain AFMDGAFA_01765 PF00440 Bacterial regulatory proteins, tetR family AFMDGAFA_01765 PF08359 YsiA-like protein, C-terminal region AFMDGAFA_01766 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFMDGAFA_01766 PF03466 LysR substrate binding domain AFMDGAFA_01769 PF00106 short chain dehydrogenase AFMDGAFA_01770 PF01575 MaoC like domain AFMDGAFA_01771 PF02770 Acyl-CoA dehydrogenase, middle domain AFMDGAFA_01771 PF12806 Acetyl-CoA dehydrogenase C-terminal like AFMDGAFA_01771 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFMDGAFA_01771 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFMDGAFA_01773 PF13193 AMP-binding enzyme C-terminal domain AFMDGAFA_01773 PF00501 AMP-binding enzyme AFMDGAFA_01786 PF10077 Uncharacterized protein conserved in bacteria (DUF2314) AFMDGAFA_01786 PF13857 Ankyrin repeats (many copies) AFMDGAFA_01787 PF07690 Major Facilitator Superfamily AFMDGAFA_01788 PF04909 Amidohydrolase AFMDGAFA_01790 PF07702 UTRA domain AFMDGAFA_01790 PF00392 Bacterial regulatory proteins, gntR family AFMDGAFA_01791 PF08450 SMP-30/Gluconolactonase/LRE-like region AFMDGAFA_01793 PF03466 LysR substrate binding domain AFMDGAFA_01793 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFMDGAFA_01796 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AFMDGAFA_01796 PF00529 Cation efflux system protein CusB domain 1 AFMDGAFA_01799 PF00171 Aldehyde dehydrogenase family AFMDGAFA_01800 PF00920 Dehydratase family AFMDGAFA_01801 PF01557 Fumarylacetoacetate (FAA) hydrolase family AFMDGAFA_01802 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFMDGAFA_01802 PF03466 LysR substrate binding domain AFMDGAFA_01803 PF01370 NAD dependent epimerase/dehydratase family AFMDGAFA_01804 PF07690 Major Facilitator Superfamily AFMDGAFA_01805 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AFMDGAFA_01805 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AFMDGAFA_01806 PF12833 Helix-turn-helix domain AFMDGAFA_01806 PF06719 AraC-type transcriptional regulator N-terminus AFMDGAFA_01807 PF08240 Alcohol dehydrogenase GroES-like domain AFMDGAFA_01807 PF00107 Zinc-binding dehydrogenase AFMDGAFA_01809 PF01032 FecCD transport family AFMDGAFA_01810 PF00005 ABC transporter AFMDGAFA_01814 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AFMDGAFA_01814 PF14572 Phosphoribosyl synthetase-associated domain AFMDGAFA_01815 PF18127 Nicotinamide phosphoribosyltransferase, N-terminal domain AFMDGAFA_01815 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AFMDGAFA_01822 PF03472 Autoinducer binding domain AFMDGAFA_01822 PF00196 Bacterial regulatory proteins, luxR family AFMDGAFA_01823 PF01425 Amidase AFMDGAFA_01824 PF13533 Biotin-lipoyl like AFMDGAFA_01825 PF13533 Biotin-lipoyl like AFMDGAFA_01826 PF07690 Major Facilitator Superfamily AFMDGAFA_01831 PF01975 Survival protein SurE AFMDGAFA_01833 PF02824 TGS domain AFMDGAFA_01833 PF13291 ACT domain AFMDGAFA_01833 PF04607 Region found in RelA / SpoT proteins AFMDGAFA_01839 PF06114 IrrE N-terminal-like domain AFMDGAFA_01841 PF13673 Acetyltransferase (GNAT) domain AFMDGAFA_01846 PF00106 short chain dehydrogenase AFMDGAFA_01848 PF12146 Serine aminopeptidase, S33 AFMDGAFA_01849 PF02311 AraC-like ligand binding domain AFMDGAFA_01849 PF12833 Helix-turn-helix domain AFMDGAFA_01850 PF19582 Solute-binding protein AdeT 1/2 AFMDGAFA_01852 PF00512 His Kinase A (phospho-acceptor) domain AFMDGAFA_01852 PF16527 Two-component sensor protein CpxA, periplasmic domain AFMDGAFA_01852 PF00672 HAMP domain AFMDGAFA_01852 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFMDGAFA_01853 PF00072 Response regulator receiver domain AFMDGAFA_01853 PF00486 Transcriptional regulatory protein, C terminal AFMDGAFA_01854 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AFMDGAFA_01854 PF00529 Cation efflux system protein CusB domain 1 AFMDGAFA_01855 PF00873 AcrB/AcrD/AcrF family AFMDGAFA_01856 PF17760 UvrA interaction domain AFMDGAFA_01856 PF17755 UvrA DNA-binding domain AFMDGAFA_01856 PF00005 ABC transporter AFMDGAFA_01858 PF05144 Phage replication protein CRI AFMDGAFA_01858 PF05155 Phage X family AFMDGAFA_01868 PF05155 Phage X family AFMDGAFA_01868 PF05144 Phage replication protein CRI AFMDGAFA_01872 PF16970 Type-1 fimbrial protein, A AFMDGAFA_01873 PF02753 Pili assembly chaperone PapD, C-terminal domain AFMDGAFA_01873 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AFMDGAFA_01874 PF13953 PapC C-terminal domain AFMDGAFA_01874 PF13954 PapC N-terminal domain AFMDGAFA_01874 PF00577 Outer membrane usher protein AFMDGAFA_01878 PF08240 Alcohol dehydrogenase GroES-like domain AFMDGAFA_01878 PF00107 Zinc-binding dehydrogenase AFMDGAFA_01883 PF13091 PLD-like domain AFMDGAFA_01887 PF01244 Membrane dipeptidase (Peptidase family M19) AFMDGAFA_01888 PF04055 Radical SAM superfamily AFMDGAFA_01888 PF13186 Iron-sulfur cluster-binding domain AFMDGAFA_01889 PF05402 Coenzyme PQQ synthesis protein D (PqqD) AFMDGAFA_01890 PF03070 TENA/THI-4/PQQC family AFMDGAFA_01891 PF12706 Beta-lactamase superfamily domain AFMDGAFA_01892 PF13090 Polyphosphate kinase C-terminal domain 2 AFMDGAFA_01892 PF02503 Polyphosphate kinase middle domain AFMDGAFA_01892 PF13089 Polyphosphate kinase N-terminal domain AFMDGAFA_01892 PF17941 Polyphosphate kinase C-terminal domain 1 AFMDGAFA_01893 PF00149 Calcineurin-like phosphoesterase AFMDGAFA_01895 PF00857 Isochorismatase family AFMDGAFA_01895 PF00550 Phosphopantetheine attachment site AFMDGAFA_01896 PF00106 short chain dehydrogenase AFMDGAFA_01897 PF03459 TOBE domain AFMDGAFA_01897 PF00005 ABC transporter AFMDGAFA_01898 PF00528 Binding-protein-dependent transport system inner membrane component AFMDGAFA_01900 PF03459 TOBE domain AFMDGAFA_01900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFMDGAFA_01901 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AFMDGAFA_01901 PF00355 Rieske [2Fe-2S] domain AFMDGAFA_01902 PF00866 Ring hydroxylating beta subunit AFMDGAFA_01903 PF00111 2Fe-2S iron-sulfur cluster binding domain AFMDGAFA_01903 PF00175 Oxidoreductase NAD-binding domain AFMDGAFA_01903 PF00970 Oxidoreductase FAD-binding domain AFMDGAFA_01904 PF14525 AraC-binding-like domain AFMDGAFA_01904 PF12833 Helix-turn-helix domain AFMDGAFA_01906 PF01613 Flavin reductase like domain AFMDGAFA_01909 PF01738 Dienelactone hydrolase family AFMDGAFA_01910 PF07690 Major Facilitator Superfamily AFMDGAFA_01911 PF06719 AraC-type transcriptional regulator N-terminus AFMDGAFA_01911 PF12833 Helix-turn-helix domain AFMDGAFA_01915 PF00440 Bacterial regulatory proteins, tetR family AFMDGAFA_01920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFMDGAFA_01920 PF03466 LysR substrate binding domain AFMDGAFA_01921 PF01144 Coenzyme A transferase AFMDGAFA_01922 PF01144 Coenzyme A transferase AFMDGAFA_01923 PF02667 Short chain fatty acid transporter AFMDGAFA_01924 PF00108 Thiolase, N-terminal domain AFMDGAFA_01924 PF02803 Thiolase, C-terminal domain AFMDGAFA_01925 PF03466 LysR substrate binding domain AFMDGAFA_01925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFMDGAFA_01926 PF03466 LysR substrate binding domain AFMDGAFA_01926 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFMDGAFA_01929 PF00206 Lyase AFMDGAFA_01929 PF10415 Fumarase C C-terminus AFMDGAFA_01930 PF00593 TonB dependent receptor AFMDGAFA_01930 PF07715 TonB-dependent Receptor Plug Domain AFMDGAFA_01931 PF00083 Sugar (and other) transporter AFMDGAFA_01934 PF00005 ABC transporter AFMDGAFA_01935 PF00528 Binding-protein-dependent transport system inner membrane component AFMDGAFA_01936 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AFMDGAFA_01938 PF02910 Fumarate reductase flavoprotein C-term AFMDGAFA_01938 PF00890 FAD binding domain AFMDGAFA_01939 PF07702 UTRA domain AFMDGAFA_01939 PF00392 Bacterial regulatory proteins, gntR family AFMDGAFA_01940 PF02417 Chromate transporter AFMDGAFA_01941 PF02525 Flavodoxin-like fold AFMDGAFA_01942 PF01638 HxlR-like helix-turn-helix AFMDGAFA_01943 PF06445 GyrI-like small molecule binding domain AFMDGAFA_01943 PF12833 Helix-turn-helix domain AFMDGAFA_01945 PF03447 Homoserine dehydrogenase, NAD binding domain AFMDGAFA_01945 PF00742 Homoserine dehydrogenase AFMDGAFA_01946 PF01925 Sulfite exporter TauE/SafE AFMDGAFA_01947 PF00753 Metallo-beta-lactamase superfamily AFMDGAFA_01947 PF04273 Beta-lactamase hydrolase-like protein, phosphatase-like domain AFMDGAFA_01948 PF04273 Beta-lactamase hydrolase-like protein, phosphatase-like domain AFMDGAFA_01948 PF00753 Metallo-beta-lactamase superfamily AFMDGAFA_01949 PF02954 Bacterial regulatory protein, Fis family AFMDGAFA_01949 PF00072 Response regulator receiver domain AFMDGAFA_01949 PF00158 Sigma-54 interaction domain AFMDGAFA_01950 PF01062 Bestrophin, RFP-TM, chloride channel AFMDGAFA_01951 PF08240 Alcohol dehydrogenase GroES-like domain AFMDGAFA_01951 PF00107 Zinc-binding dehydrogenase AFMDGAFA_01952 PF00106 short chain dehydrogenase AFMDGAFA_01953 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AFMDGAFA_01953 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFMDGAFA_01954 PF02817 e3 binding domain AFMDGAFA_01954 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AFMDGAFA_01954 PF00364 Biotin-requiring enzyme AFMDGAFA_01955 PF02779 Transketolase, pyrimidine binding domain AFMDGAFA_01955 PF02780 Transketolase, C-terminal domain AFMDGAFA_01956 PF00676 Dehydrogenase E1 component AFMDGAFA_01957 PF04055 Radical SAM superfamily AFMDGAFA_01960 PF08448 PAS fold AFMDGAFA_01960 PF00990 Diguanylate cyclase, GGDEF domain AFMDGAFA_01961 PF01264 Chorismate synthase AFMDGAFA_01962 PF05175 Methyltransferase small domain AFMDGAFA_01963 PF00291 Pyridoxal-phosphate dependent enzyme AFMDGAFA_01965 PF00004 ATPase family associated with various cellular activities (AAA) AFMDGAFA_01965 PF17862 AAA+ lid domain AFMDGAFA_01965 PF01434 Peptidase family M41 AFMDGAFA_01967 PF05166 YcgL domain AFMDGAFA_01971 PF01612 3'-5' exonuclease AFMDGAFA_01971 PF00570 HRDC domain AFMDGAFA_01972 PF02132 RecR protein AFMDGAFA_01972 PF13662 Toprim domain AFMDGAFA_01973 PF02575 YbaB/EbfC DNA-binding family AFMDGAFA_01975 PF01053 Cys/Met metabolism PLP-dependent enzyme AFMDGAFA_01976 PF00561 alpha/beta hydrolase fold AFMDGAFA_01977 PF08241 Methyltransferase domain AFMDGAFA_01983 PF01230 HIT domain AFMDGAFA_01990 PF00005 ABC transporter AFMDGAFA_01991 PF13533 Biotin-lipoyl like AFMDGAFA_01991 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AFMDGAFA_01993 PF02684 Lipid-A-disaccharide synthetase AFMDGAFA_01994 PF00593 TonB dependent receptor AFMDGAFA_01994 PF07715 TonB-dependent Receptor Plug Domain AFMDGAFA_01998 PF01925 Sulfite exporter TauE/SafE AFMDGAFA_01999 PF00793 DAHP synthetase I family AFMDGAFA_02000 PF02654 Cobalamin-5-phosphate synthase AFMDGAFA_02002 PF00300 Histidine phosphatase superfamily (branch 1) AFMDGAFA_02003 PF02277 Phosphoribosyltransferase AFMDGAFA_02004 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase AFMDGAFA_02006 PF13419 Haloacid dehalogenase-like hydrolase AFMDGAFA_02011 PF00593 TonB dependent receptor AFMDGAFA_02011 PF07715 TonB-dependent Receptor Plug Domain AFMDGAFA_02012 PF03737 Aldolase/RraA AFMDGAFA_02014 PF06276 Ferric iron reductase FhuF-like transporter AFMDGAFA_02014 PF04183 IucA / IucC family AFMDGAFA_02015 PF06276 Ferric iron reductase FhuF-like transporter AFMDGAFA_02015 PF04183 IucA / IucC family AFMDGAFA_02016 PF07690 Major Facilitator Superfamily AFMDGAFA_02017 PF13434 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase AFMDGAFA_02018 PF06276 Ferric iron reductase FhuF-like transporter AFMDGAFA_02018 PF04183 IucA / IucC family AFMDGAFA_02019 PF04073 Aminoacyl-tRNA editing domain AFMDGAFA_02021 PF03109 ABC1 atypical kinase-like domain AFMDGAFA_02022 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFMDGAFA_02022 PF02770 Acyl-CoA dehydrogenase, middle domain AFMDGAFA_02022 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFMDGAFA_02023 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFMDGAFA_02023 PF02770 Acyl-CoA dehydrogenase, middle domain AFMDGAFA_02023 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFMDGAFA_02024 PF00487 Fatty acid desaturase AFMDGAFA_02025 PF12852 Cupin AFMDGAFA_02025 PF12833 Helix-turn-helix domain AFMDGAFA_02028 PF00639 PPIC-type PPIASE domain AFMDGAFA_02028 PF09312 SurA N-terminal domain AFMDGAFA_02029 PF00216 Bacterial DNA-binding protein AFMDGAFA_02032 PF02082 Iron-dependent Transcriptional regulator AFMDGAFA_02033 PF00266 Aminotransferase class-V AFMDGAFA_02034 PF01592 NifU-like N terminal domain AFMDGAFA_02035 PF01521 Iron-sulphur cluster biosynthesis AFMDGAFA_02036 PF00226 DnaJ domain AFMDGAFA_02036 PF07743 HSCB C-terminal oligomerisation domain AFMDGAFA_02037 PF00012 Hsp70 protein AFMDGAFA_02038 PF00111 2Fe-2S iron-sulfur cluster binding domain AFMDGAFA_02039 PF00211 Adenylate and Guanylate cyclase catalytic domain AFMDGAFA_02041 PF02559 CarD-like/TRCF domain AFMDGAFA_02041 PF00270 DEAD/DEAH box helicase AFMDGAFA_02041 PF00271 Helicase conserved C-terminal domain AFMDGAFA_02041 PF03461 TRCF domain AFMDGAFA_02041 PF17757 UvrB interaction domain AFMDGAFA_02043 PF04261 Dyp-type peroxidase family AFMDGAFA_02045 PF03737 Aldolase/RraA AFMDGAFA_02046 PF13460 NAD(P)H-binding AFMDGAFA_02047 PF01649 Ribosomal protein S20 AFMDGAFA_02049 PF00459 Inositol monophosphatase family AFMDGAFA_02052 PF00005 ABC transporter AFMDGAFA_02052 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AFMDGAFA_02053 PF00528 Binding-protein-dependent transport system inner membrane component AFMDGAFA_02054 PF00528 Binding-protein-dependent transport system inner membrane component AFMDGAFA_02054 PF19300 Binding-prot-dependent transport system membrane comp, N-term AFMDGAFA_02055 PF01432 Peptidase family M3 AFMDGAFA_02055 PF19310 Neurolysin/Thimet oligopeptidase, N-terminal domain AFMDGAFA_02056 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AFMDGAFA_02057 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AFMDGAFA_02059 PF00593 TonB dependent receptor AFMDGAFA_02059 PF07715 TonB-dependent Receptor Plug Domain AFMDGAFA_02061 PF01618 MotA/TolQ/ExbB proton channel family AFMDGAFA_02062 PF02472 Biopolymer transport protein ExbD/TolR AFMDGAFA_02063 PF02472 Biopolymer transport protein ExbD/TolR AFMDGAFA_02065 PF01274 Malate synthase AFMDGAFA_02088 PF04860 Phage portal protein AFMDGAFA_02105 PF00772 DnaB-like helicase N terminal domain AFMDGAFA_02105 PF03796 DnaB-like helicase C terminal domain AFMDGAFA_02119 PF13495 Phage integrase, N-terminal SAM-like domain AFMDGAFA_02119 PF00589 Phage integrase family AFMDGAFA_02120 PF03969 AFG1-like ATPase AFMDGAFA_02122 PF00743 Flavin-binding monooxygenase-like AFMDGAFA_02124 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AFMDGAFA_02126 PF00216 Bacterial DNA-binding protein AFMDGAFA_02127 PF00575 S1 RNA binding domain AFMDGAFA_02128 PF02224 Cytidylate kinase AFMDGAFA_02130 PF14437 MafB19-like deaminase AFMDGAFA_02132 PF03167 Uracil DNA glycosylase superfamily AFMDGAFA_02134 PF03934 Type II secretion system (T2SS), protein K AFMDGAFA_02135 PF07963 Prokaryotic N-terminal methylation motif AFMDGAFA_02135 PF11612 Type II secretion system (T2SS), protein J AFMDGAFA_02136 PF07963 Prokaryotic N-terminal methylation motif AFMDGAFA_02136 PF02501 Type II secretion system (T2SS), protein I AFMDGAFA_02139 PF01026 TatD related DNase AFMDGAFA_02141 PF09115 DNA polymerase III, delta subunit, C terminal AFMDGAFA_02142 PF02348 Cytidylyltransferase AFMDGAFA_02143 PF02606 Tetraacyldisaccharide-1-P 4'-kinase AFMDGAFA_02144 PF00664 ABC transporter transmembrane region AFMDGAFA_02144 PF00005 ABC transporter AFMDGAFA_02146 PF01618 MotA/TolQ/ExbB proton channel family AFMDGAFA_02147 PF02195 ParB/Sulfiredoxin domain AFMDGAFA_02147 PF17762 HTH domain found in ParB protein AFMDGAFA_02148 PF13614 AAA domain AFMDGAFA_02149 PF02527 rRNA small subunit methyltransferase G AFMDGAFA_02150 PF00483 Nucleotidyl transferase AFMDGAFA_02151 PF01636 Phosphotransferase enzyme family AFMDGAFA_02152 PF04453 LPS transport system D AFMDGAFA_02152 PF03968 LptA/(LptD N-terminal domain) LPS transport protein AFMDGAFA_02153 PF09312 SurA N-terminal domain AFMDGAFA_02153 PF00639 PPIC-type PPIASE domain AFMDGAFA_02154 PF01116 Fructose-bisphosphate aldolase class-II AFMDGAFA_02156 PF00162 Phosphoglycerate kinase AFMDGAFA_02158 PF02545 Maf-like protein AFMDGAFA_02159 PF08007 JmjC domain AFMDGAFA_02159 PF20514 ROXA-like winged helix AFMDGAFA_02162 PF00375 Sodium:dicarboxylate symporter family AFMDGAFA_02163 PF06912 Protein of unknown function (DUF1275) AFMDGAFA_02164 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) AFMDGAFA_02165 PF00664 ABC transporter transmembrane region AFMDGAFA_02165 PF00005 ABC transporter AFMDGAFA_02167 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term AFMDGAFA_02167 PF12833 Helix-turn-helix domain AFMDGAFA_02168 PF01597 Glycine cleavage H-protein AFMDGAFA_02169 PF02146 Sir2 family AFMDGAFA_02170 PF00474 Sodium:solute symporter family AFMDGAFA_02171 PF01037 Lrp/AsnC ligand binding domain AFMDGAFA_02172 PF01619 Proline dehydrogenase AFMDGAFA_02172 PF14850 DNA-binding domain of Proline dehydrogenase AFMDGAFA_02172 PF18327 Proline utilization A proline dehydrogenase N-terminal domain AFMDGAFA_02172 PF00171 Aldehyde dehydrogenase family AFMDGAFA_02173 PF04229 GrpB protein AFMDGAFA_02174 PF05958 tRNA (Uracil-5-)-methyltransferase AFMDGAFA_02176 PF09992 Phosphodiester glycosidase AFMDGAFA_02178 PF04264 YceI-like domain AFMDGAFA_02180 PF00456 Transketolase, thiamine diphosphate binding domain AFMDGAFA_02180 PF02779 Transketolase, pyrimidine binding domain AFMDGAFA_02180 PF02780 Transketolase, C-terminal domain AFMDGAFA_02181 PF00438 S-adenosylmethionine synthetase, N-terminal domain AFMDGAFA_02181 PF02773 S-adenosylmethionine synthetase, C-terminal domain AFMDGAFA_02181 PF02772 S-adenosylmethionine synthetase, central domain AFMDGAFA_02185 PF00905 Penicillin binding protein transpeptidase domain AFMDGAFA_02186 PF00583 Acetyltransferase (GNAT) family AFMDGAFA_02188 PF02075 Crossover junction endodeoxyribonuclease RuvC AFMDGAFA_02189 PF03853 YjeF-related protein N-terminus AFMDGAFA_02189 PF01256 Carbohydrate kinase AFMDGAFA_02190 PF08331 Epoxyqueuosine reductase QueG, DUF1730 AFMDGAFA_02191 PF06968 Biotin and Thiamin Synthesis associated domain AFMDGAFA_02191 PF04055 Radical SAM superfamily AFMDGAFA_02194 PF16970 Type-1 fimbrial protein, A AFMDGAFA_02195 PF02753 Pili assembly chaperone PapD, C-terminal domain AFMDGAFA_02195 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AFMDGAFA_02196 PF00577 Outer membrane usher protein AFMDGAFA_02196 PF13954 PapC N-terminal domain AFMDGAFA_02196 PF13953 PapC C-terminal domain AFMDGAFA_02200 PF00892 EamA-like transporter family AFMDGAFA_02202 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AFMDGAFA_02204 PF03466 LysR substrate binding domain AFMDGAFA_02204 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFMDGAFA_02210 PF00440 Bacterial regulatory proteins, tetR family AFMDGAFA_02212 PF01709 Transcriptional regulator AFMDGAFA_02213 PF01037 Lrp/AsnC ligand binding domain AFMDGAFA_02215 PF00005 ABC transporter AFMDGAFA_02216 PF00528 Binding-protein-dependent transport system inner membrane component AFMDGAFA_02217 PF00528 Binding-protein-dependent transport system inner membrane component AFMDGAFA_02218 PF00497 Bacterial extracellular solute-binding proteins, family 3 AFMDGAFA_02220 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AFMDGAFA_02220 PF02770 Acyl-CoA dehydrogenase, middle domain AFMDGAFA_02220 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFMDGAFA_02222 PF00296 Luciferase-like monooxygenase AFMDGAFA_02223 PF03180 NlpA lipoprotein AFMDGAFA_02224 PF03180 NlpA lipoprotein AFMDGAFA_02225 PF00005 ABC transporter AFMDGAFA_02225 PF09383 NIL domain AFMDGAFA_02226 PF00528 Binding-protein-dependent transport system inner membrane component AFMDGAFA_02227 PF06071 Protein of unknown function (DUF933) AFMDGAFA_02227 PF01926 50S ribosome-binding GTPase AFMDGAFA_02232 PF03591 AzlC protein AFMDGAFA_02233 PF05437 Branched-chain amino acid transport protein (AzlD) AFMDGAFA_02235 PF02222 ATP-grasp domain AFMDGAFA_02236 PF01966 HD domain AFMDGAFA_02236 PF08335 GlnD PII-uridylyltransferase AFMDGAFA_02236 PF01909 Nucleotidyltransferase domain AFMDGAFA_02237 PF00155 Aminotransferase class I and II AFMDGAFA_02239 PF12833 Helix-turn-helix domain AFMDGAFA_02239 PF12852 Cupin AFMDGAFA_02240 PF00255 Glutathione peroxidase AFMDGAFA_02241 PF01641 SelR domain AFMDGAFA_02242 PF00155 Aminotransferase class I and II AFMDGAFA_02243 PF00375 Sodium:dicarboxylate symporter family AFMDGAFA_02244 PF17763 Glutaminase/Asparaginase C-terminal domain AFMDGAFA_02244 PF00710 Asparaginase, N-terminal AFMDGAFA_02245 PF07733 Bacterial DNA polymerase III alpha NTPase domain AFMDGAFA_02245 PF02811 PHP domain AFMDGAFA_02245 PF01336 OB-fold nucleic acid binding domain AFMDGAFA_02245 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AFMDGAFA_02245 PF14579 Helix-hairpin-helix motif AFMDGAFA_02246 PF00588 SpoU rRNA Methylase family AFMDGAFA_02247 PF00132 Bacterial transferase hexapeptide (six repeats) AFMDGAFA_02250 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFMDGAFA_02250 PF13192 Thioredoxin domain AFMDGAFA_02252 PF02417 Chromate transporter AFMDGAFA_02253 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFMDGAFA_02253 PF03466 LysR substrate binding domain AFMDGAFA_02254 PF01758 Sodium Bile acid symporter family AFMDGAFA_02255 PF01022 Bacterial regulatory protein, arsR family AFMDGAFA_02256 PF03960 ArsC family AFMDGAFA_02258 PF13382 Adenine deaminase C-terminal domain AFMDGAFA_02258 PF01979 Amidohydrolase family AFMDGAFA_02260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFMDGAFA_02260 PF03466 LysR substrate binding domain AFMDGAFA_02262 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AFMDGAFA_02263 PF01177 Asp/Glu/Hydantoin racemase AFMDGAFA_02264 PF02668 Taurine catabolism dioxygenase TauD, TfdA family AFMDGAFA_02265 PF00528 Binding-protein-dependent transport system inner membrane component AFMDGAFA_02266 PF00005 ABC transporter AFMDGAFA_02267 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AFMDGAFA_02269 PF00083 Sugar (and other) transporter AFMDGAFA_02270 PF00296 Luciferase-like monooxygenase AFMDGAFA_02273 PF01654 Cytochrome bd terminal oxidase subunit I AFMDGAFA_02274 PF02322 Cytochrome bd terminal oxidase subunit II AFMDGAFA_02275 PF00155 Aminotransferase class I and II AFMDGAFA_02275 PF00392 Bacterial regulatory proteins, gntR family AFMDGAFA_02276 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFMDGAFA_02276 PF03466 LysR substrate binding domain AFMDGAFA_02279 PF00698 Acyl transferase domain AFMDGAFA_02280 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG AFMDGAFA_02282 PF01039 Carboxyl transferase domain AFMDGAFA_02283 PF06857 Malonate decarboxylase delta subunit (MdcD) AFMDGAFA_02284 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase AFMDGAFA_02285 PF16957 Malonate decarboxylase, alpha subunit, transporter AFMDGAFA_02286 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFMDGAFA_02286 PF03466 LysR substrate binding domain AFMDGAFA_02288 PF07690 Major Facilitator Superfamily AFMDGAFA_02291 PF00392 Bacterial regulatory proteins, gntR family AFMDGAFA_02292 PF04172 LrgB-like family AFMDGAFA_02293 PF03788 LrgA family AFMDGAFA_02294 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFMDGAFA_02294 PF03466 LysR substrate binding domain AFMDGAFA_02295 PF14834 Glutathione S-transferase, C-terminal domain AFMDGAFA_02295 PF02798 Glutathione S-transferase, N-terminal domain AFMDGAFA_02296 PF02798 Glutathione S-transferase, N-terminal domain AFMDGAFA_02297 PF03466 LysR substrate binding domain AFMDGAFA_02297 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFMDGAFA_02299 PF00581 Rhodanese-like domain AFMDGAFA_02300 PF00132 Bacterial transferase hexapeptide (six repeats) AFMDGAFA_02301 PF19307 Phage capsid-like protein AFMDGAFA_02302 PF00266 Aminotransferase class-V AFMDGAFA_02303 PF01810 LysE type translocator AFMDGAFA_02304 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFMDGAFA_02304 PF03466 LysR substrate binding domain AFMDGAFA_02305 PF00497 Bacterial extracellular solute-binding proteins, family 3 AFMDGAFA_02306 PF00497 Bacterial extracellular solute-binding proteins, family 3 AFMDGAFA_02307 PF00005 ABC transporter AFMDGAFA_02308 PF00528 Binding-protein-dependent transport system inner membrane component AFMDGAFA_02309 PF00528 Binding-protein-dependent transport system inner membrane component AFMDGAFA_02311 PF00072 Response regulator receiver domain AFMDGAFA_02312 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFMDGAFA_02312 PF00512 His Kinase A (phospho-acceptor) domain AFMDGAFA_02312 PF09308 LuxQ, periplasmic AFMDGAFA_02312 PF00072 Response regulator receiver domain AFMDGAFA_02314 PF13404 AsnC-type helix-turn-helix domain AFMDGAFA_02314 PF01037 Lrp/AsnC ligand binding domain AFMDGAFA_02316 PF00717 Peptidase S24-like AFMDGAFA_02321 PF06628 Catalase-related immune-responsive AFMDGAFA_02321 PF18011 C-terminal domain found in long catalases AFMDGAFA_02321 PF00199 Catalase AFMDGAFA_02323 PF00994 Probable molybdopterin binding domain AFMDGAFA_02323 PF18146 Damage-inducible protein CinA KH domain AFMDGAFA_02323 PF02464 Competence-damaged protein AFMDGAFA_02332 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFMDGAFA_02332 PF03466 LysR substrate binding domain AFMDGAFA_02336 PF00501 AMP-binding enzyme AFMDGAFA_02336 PF13193 AMP-binding enzyme C-terminal domain AFMDGAFA_02337 PF00440 Bacterial regulatory proteins, tetR family AFMDGAFA_02338 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFMDGAFA_02338 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFMDGAFA_02338 PF02770 Acyl-CoA dehydrogenase, middle domain AFMDGAFA_02339 PF01039 Carboxyl transferase domain AFMDGAFA_02340 PF00378 Enoyl-CoA hydratase/isomerase AFMDGAFA_02341 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AFMDGAFA_02341 PF00364 Biotin-requiring enzyme AFMDGAFA_02341 PF00289 Biotin carboxylase, N-terminal domain AFMDGAFA_02341 PF02785 Biotin carboxylase C-terminal domain AFMDGAFA_02341 PF18140 Propionyl-coenzyme A carboxylase BT domain AFMDGAFA_02342 PF00682 HMGL-like AFMDGAFA_02343 PF03466 LysR substrate binding domain AFMDGAFA_02343 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFMDGAFA_02346 PF01810 LysE type translocator AFMDGAFA_02347 PF13419 Haloacid dehalogenase-like hydrolase AFMDGAFA_02348 PF00266 Aminotransferase class-V AFMDGAFA_02349 PF01266 FAD dependent oxidoreductase AFMDGAFA_02350 PF00528 Binding-protein-dependent transport system inner membrane component AFMDGAFA_02351 PF08402 TOBE domain AFMDGAFA_02351 PF00005 ABC transporter AFMDGAFA_02353 PF07702 UTRA domain AFMDGAFA_02353 PF00392 Bacterial regulatory proteins, gntR family AFMDGAFA_02354 PF01168 Alanine racemase, N-terminal domain AFMDGAFA_02354 PF00842 Alanine racemase, C-terminal domain AFMDGAFA_02355 PF01494 FAD binding domain AFMDGAFA_02356 PF09339 IclR helix-turn-helix domain AFMDGAFA_02356 PF01614 Bacterial transcriptional regulator AFMDGAFA_02357 PF02525 Flavodoxin-like fold AFMDGAFA_02358 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFMDGAFA_02358 PF03466 LysR substrate binding domain AFMDGAFA_02359 PF01292 Prokaryotic cytochrome b561 AFMDGAFA_02360 PF00199 Catalase AFMDGAFA_02367 PF03061 Thioesterase superfamily AFMDGAFA_02368 PF00132 Bacterial transferase hexapeptide (six repeats) AFMDGAFA_02369 PF07848 PaaX-like protein AFMDGAFA_02369 PF08223 PaaX-like protein C-terminal domain AFMDGAFA_02370 PF00501 AMP-binding enzyme AFMDGAFA_02370 PF14535 AMP-binding enzyme C-terminal domain AFMDGAFA_02371 PF02803 Thiolase, C-terminal domain AFMDGAFA_02371 PF00108 Thiolase, N-terminal domain AFMDGAFA_02372 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AFMDGAFA_02372 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AFMDGAFA_02372 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain AFMDGAFA_02373 PF00378 Enoyl-CoA hydratase/isomerase AFMDGAFA_02374 PF00378 Enoyl-CoA hydratase/isomerase AFMDGAFA_02375 PF00175 Oxidoreductase NAD-binding domain AFMDGAFA_02375 PF00111 2Fe-2S iron-sulfur cluster binding domain AFMDGAFA_02375 PF00970 Oxidoreductase FAD-binding domain AFMDGAFA_02376 PF01883 Iron-sulfur cluster assembly protein AFMDGAFA_02377 PF05138 Phenylacetic acid catabolic protein AFMDGAFA_02378 PF06243 Phenylacetic acid degradation B AFMDGAFA_02379 PF05138 Phenylacetic acid catabolic protein AFMDGAFA_02380 PF00171 Aldehyde dehydrogenase family AFMDGAFA_02380 PF01575 MaoC like domain AFMDGAFA_02381 PF03313 Serine dehydratase alpha chain AFMDGAFA_02381 PF03315 Serine dehydratase beta chain AFMDGAFA_02382 PF13520 Amino acid permease AFMDGAFA_02383 PF00171 Aldehyde dehydrogenase family AFMDGAFA_02384 PF00083 Sugar (and other) transporter AFMDGAFA_02386 PF04324 BFD-like [2Fe-2S] binding domain AFMDGAFA_02386 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFMDGAFA_02388 PF01266 FAD dependent oxidoreductase AFMDGAFA_02389 PF05544 Proline racemase AFMDGAFA_02390 PF00392 Bacterial regulatory proteins, gntR family AFMDGAFA_02392 PF00701 Dihydrodipicolinate synthetase family AFMDGAFA_02396 PF09278 MerR, DNA binding AFMDGAFA_02396 PF00376 MerR family regulatory protein AFMDGAFA_02398 PF02677 Epoxyqueuosine reductase QueH AFMDGAFA_02401 PF07690 Major Facilitator Superfamily AFMDGAFA_02402 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AFMDGAFA_02404 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFMDGAFA_02404 PF03466 LysR substrate binding domain AFMDGAFA_02408 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE AFMDGAFA_02409 PF06812 ImpA, N-terminal, type VI secretion system AFMDGAFA_02410 PF10431 C-terminal, D2-small domain, of ClpB protein AFMDGAFA_02410 PF07724 AAA domain (Cdc48 subfamily) AFMDGAFA_02410 PF17871 AAA lid domain AFMDGAFA_02410 PF00004 ATPase family associated with various cellular activities (AAA) AFMDGAFA_02412 PF00691 OmpA family AFMDGAFA_02412 PF01389 OmpA-like transmembrane domain AFMDGAFA_02414 PF06761 Intracellular multiplication and human macrophage-killing AFMDGAFA_02414 PF14331 IcmF-related N-terminal domain AFMDGAFA_02414 PF06744 Type VI secretion protein IcmF C2-like domain AFMDGAFA_02417 PF05947 Type VI secretion system, TssF AFMDGAFA_02420 PF05943 EvpB/VC_A0108, tail sheath N-terminal domain AFMDGAFA_02420 PF18945 EvpB/VC_A0108, tail sheath gpW/gp25-like domain AFMDGAFA_02423 PF03781 Sulfatase-modifying factor enzyme 1 AFMDGAFA_02425 PF04717 Type VI secretion system/phage-baseplate injector OB domain AFMDGAFA_02425 PF13296 Putative type VI secretion system Rhs element Vgr AFMDGAFA_02425 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) AFMDGAFA_02428 PF00005 ABC transporter AFMDGAFA_02429 PF00497 Bacterial extracellular solute-binding proteins, family 3 AFMDGAFA_02430 PF01425 Amidase AFMDGAFA_02431 PF08753 NikR C terminal nickel binding domain AFMDGAFA_02431 PF01402 Ribbon-helix-helix protein, copG family AFMDGAFA_02434 PF01638 HxlR-like helix-turn-helix AFMDGAFA_02435 PF02525 Flavodoxin-like fold AFMDGAFA_02436 PF00289 Biotin carboxylase, N-terminal domain AFMDGAFA_02436 PF02785 Biotin carboxylase C-terminal domain AFMDGAFA_02436 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AFMDGAFA_02440 PF00107 Zinc-binding dehydrogenase AFMDGAFA_02440 PF08240 Alcohol dehydrogenase GroES-like domain AFMDGAFA_02440 PF13823 Alcohol dehydrogenase GroES-associated AFMDGAFA_02442 PF00440 Bacterial regulatory proteins, tetR family AFMDGAFA_02445 PF00226 DnaJ domain AFMDGAFA_02445 PF01556 DnaJ C terminal domain AFMDGAFA_02445 PF00684 DnaJ central domain AFMDGAFA_02446 PF00654 Voltage gated chloride channel AFMDGAFA_02447 PF00364 Biotin-requiring enzyme AFMDGAFA_02447 PF02785 Biotin carboxylase C-terminal domain AFMDGAFA_02447 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AFMDGAFA_02447 PF00289 Biotin carboxylase, N-terminal domain AFMDGAFA_02449 PF07286 D-glutamate cyclase AFMDGAFA_02450 PF03746 LamB/YcsF family AFMDGAFA_02451 PF01566 Natural resistance-associated macrophage protein AFMDGAFA_02452 PF03466 LysR substrate binding domain AFMDGAFA_02452 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFMDGAFA_02455 PF13419 Haloacid dehalogenase-like hydrolase AFMDGAFA_02458 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AFMDGAFA_02458 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AFMDGAFA_02462 PF07690 Major Facilitator Superfamily AFMDGAFA_02467 PF03279 Bacterial lipid A biosynthesis acyltransferase AFMDGAFA_02468 PF00563 EAL domain AFMDGAFA_02468 PF00990 Diguanylate cyclase, GGDEF domain AFMDGAFA_02468 PF03707 Bacterial signalling protein N terminal repeat AFMDGAFA_02469 PF00892 EamA-like transporter family AFMDGAFA_02470 PF01037 Lrp/AsnC ligand binding domain AFMDGAFA_02471 PF05188 MutS domain II AFMDGAFA_02471 PF05192 MutS domain III AFMDGAFA_02471 PF05190 MutS family domain IV AFMDGAFA_02471 PF00488 MutS domain V AFMDGAFA_02471 PF01624 MutS domain I AFMDGAFA_02473 PF00037 4Fe-4S binding domain AFMDGAFA_02473 PF11953 Domain of unknown function (DUF3470) AFMDGAFA_02475 PF01596 O-methyltransferase AFMDGAFA_02477 PF00132 Bacterial transferase hexapeptide (six repeats) AFMDGAFA_02478 PF01205 Uncharacterized protein family UPF0029 AFMDGAFA_02480 PF00664 ABC transporter transmembrane region AFMDGAFA_02480 PF00005 ABC transporter AFMDGAFA_02481 PF02321 Outer membrane efflux protein AFMDGAFA_02482 PF00005 ABC transporter AFMDGAFA_02482 PF12399 Branched-chain amino acid ATP-binding cassette transporter AFMDGAFA_02483 PF03968 LptA/(LptD N-terminal domain) LPS transport protein AFMDGAFA_02486 PF00571 CBS domain AFMDGAFA_02486 PF01380 SIS domain AFMDGAFA_02487 PF01406 tRNA synthetases class I (C) catalytic domain AFMDGAFA_02487 PF09190 DALR domain AFMDGAFA_02493 PF01638 HxlR-like helix-turn-helix AFMDGAFA_02494 PF07690 Major Facilitator Superfamily AFMDGAFA_02499 PF03807 NADP oxidoreductase coenzyme F420-dependent AFMDGAFA_02499 PF14748 Pyrroline-5-carboxylate reductase dimerisation AFMDGAFA_02501 PF00313 'Cold-shock' DNA-binding domain AFMDGAFA_02502 PF01810 LysE type translocator AFMDGAFA_02509 PF02601 Exonuclease VII, large subunit AFMDGAFA_02509 PF13742 OB-fold nucleic acid binding domain AFMDGAFA_02517 PF09278 MerR, DNA binding AFMDGAFA_02517 PF00376 MerR family regulatory protein AFMDGAFA_02518 PF00403 Heavy-metal-associated domain AFMDGAFA_02519 PF00403 Heavy-metal-associated domain AFMDGAFA_02520 PF03466 LysR substrate binding domain AFMDGAFA_02520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFMDGAFA_02521 PF00355 Rieske [2Fe-2S] domain AFMDGAFA_02521 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AFMDGAFA_02522 PF00866 Ring hydroxylating beta subunit AFMDGAFA_02523 PF00175 Oxidoreductase NAD-binding domain AFMDGAFA_02523 PF00970 Oxidoreductase FAD-binding domain AFMDGAFA_02523 PF00111 2Fe-2S iron-sulfur cluster binding domain AFMDGAFA_02524 PF00106 short chain dehydrogenase AFMDGAFA_02525 PF03594 Benzoate membrane transport protein AFMDGAFA_02526 PF07690 Major Facilitator Superfamily AFMDGAFA_02528 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AFMDGAFA_02528 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AFMDGAFA_02529 PF00270 DEAD/DEAH box helicase AFMDGAFA_02529 PF11898 Domain of unknown function (DUF3418) AFMDGAFA_02529 PF04408 Helicase associated domain (HA2) AFMDGAFA_02529 PF00271 Helicase conserved C-terminal domain AFMDGAFA_02529 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AFMDGAFA_02530 PF10417 C-terminal domain of 1-Cys peroxiredoxin AFMDGAFA_02530 PF00578 AhpC/TSA family AFMDGAFA_02534 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFMDGAFA_02534 PF13192 Thioredoxin domain AFMDGAFA_02536 PF00043 Glutathione S-transferase, C-terminal domain AFMDGAFA_02536 PF02798 Glutathione S-transferase, N-terminal domain AFMDGAFA_02538 PF02390 Putative methyltransferase AFMDGAFA_02539 PF02798 Glutathione S-transferase, N-terminal domain AFMDGAFA_02539 PF00043 Glutathione S-transferase, C-terminal domain AFMDGAFA_02541 PF00691 OmpA family AFMDGAFA_02541 PF13488 Glycine zipper AFMDGAFA_02542 PF01979 Amidohydrolase family AFMDGAFA_02543 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AFMDGAFA_02543 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AFMDGAFA_02545 PF10672 S-adenosylmethionine-dependent methyltransferase AFMDGAFA_02545 PF01170 Putative RNA methylase family UPF0020 AFMDGAFA_02545 PF02926 THUMP domain AFMDGAFA_02548 PF00004 ATPase family associated with various cellular activities (AAA) AFMDGAFA_02548 PF07724 AAA domain (Cdc48 subfamily) AFMDGAFA_02548 PF17871 AAA lid domain AFMDGAFA_02548 PF02861 Clp amino terminal domain, pathogenicity island component AFMDGAFA_02548 PF10431 C-terminal, D2-small domain, of ClpB protein AFMDGAFA_02551 PF02566 OsmC-like protein AFMDGAFA_02552 PF13545 Crp-like helix-turn-helix domain AFMDGAFA_02552 PF00027 Cyclic nucleotide-binding domain AFMDGAFA_02553 PF00248 Aldo/keto reductase family AFMDGAFA_02556 PF00709 Adenylosuccinate synthetase AFMDGAFA_02557 PF13393 Histidyl-tRNA synthetase AFMDGAFA_02558 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AFMDGAFA_02558 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AFMDGAFA_02559 PF02272 DHHA1 domain AFMDGAFA_02559 PF01411 tRNA synthetases class II (A) AFMDGAFA_02559 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AFMDGAFA_02560 PF13356 Arm DNA-binding domain AFMDGAFA_02560 PF00589 Phage integrase family AFMDGAFA_02563 PF00717 Peptidase S24-like AFMDGAFA_02564 PF13438 Domain of unknown function (DUF4113) AFMDGAFA_02564 PF00817 impB/mucB/samB family AFMDGAFA_02564 PF11799 impB/mucB/samB family C-terminal domain AFMDGAFA_02566 PF13737 Transposase DDE domain AFMDGAFA_02587 PF09979 Uncharacterized protein conserved in bacteria (DUF2213) AFMDGAFA_02592 PF06381 Protein of unknown function (DUF1073) AFMDGAFA_02606 PF00145 C-5 cytosine-specific DNA methylase AFMDGAFA_02609 PF15943 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT AFMDGAFA_02610 PF01726 LexA DNA binding domain AFMDGAFA_02610 PF00717 Peptidase S24-like AFMDGAFA_02620 PF00696 Amino acid kinase family AFMDGAFA_02620 PF01842 ACT domain AFMDGAFA_02620 PF13840 ACT domain AFMDGAFA_02621 PF02599 Global regulator protein family AFMDGAFA_02622 PF01351 Ribonuclease HII AFMDGAFA_02624 PF01292 Prokaryotic cytochrome b561 AFMDGAFA_02625 PF00962 Adenosine deaminase AFMDGAFA_02626 PF00860 Permease family AFMDGAFA_02628 PF00743 Flavin-binding monooxygenase-like AFMDGAFA_02631 PF17954 Quercetinase C-terminal cupin domain AFMDGAFA_02631 PF02678 Pirin AFMDGAFA_02632 PF17932 Tetracyclin repressor-like, C-terminal domain AFMDGAFA_02632 PF00440 Bacterial regulatory proteins, tetR family AFMDGAFA_02635 PF00743 Flavin-binding monooxygenase-like AFMDGAFA_02636 PF04072 Leucine carboxyl methyltransferase AFMDGAFA_02637 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term AFMDGAFA_02637 PF12833 Helix-turn-helix domain AFMDGAFA_02638 PF00743 Flavin-binding monooxygenase-like AFMDGAFA_02639 PF00106 short chain dehydrogenase AFMDGAFA_02640 PF07859 alpha/beta hydrolase fold AFMDGAFA_02641 PF05199 GMC oxidoreductase AFMDGAFA_02642 PF03573 outer membrane porin, OprD family AFMDGAFA_02643 PF07690 Major Facilitator Superfamily AFMDGAFA_02644 PF00355 Rieske [2Fe-2S] domain AFMDGAFA_02644 PF19112 Vanillate O-demethylase oxygenase C-terminal domain AFMDGAFA_02645 PF00111 2Fe-2S iron-sulfur cluster binding domain AFMDGAFA_02645 PF00175 Oxidoreductase NAD-binding domain AFMDGAFA_02648 PF07690 Major Facilitator Superfamily AFMDGAFA_02649 PF00378 Enoyl-CoA hydratase/isomerase AFMDGAFA_02650 PF00171 Aldehyde dehydrogenase family AFMDGAFA_02652 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFMDGAFA_02652 PF02770 Acyl-CoA dehydrogenase, middle domain AFMDGAFA_02652 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFMDGAFA_02653 PF03573 outer membrane porin, OprD family AFMDGAFA_02656 PF07519 Tannase and feruloyl esterase AFMDGAFA_02657 PF07729 FCD domain AFMDGAFA_02657 PF00392 Bacterial regulatory proteins, gntR family AFMDGAFA_02658 PF00171 Aldehyde dehydrogenase family AFMDGAFA_02659 PF00701 Dihydrodipicolinate synthetase family AFMDGAFA_02660 PF13378 Enolase C-terminal domain-like AFMDGAFA_02661 PF07690 Major Facilitator Superfamily AFMDGAFA_02662 PF08666 SAF domain AFMDGAFA_02662 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus AFMDGAFA_02663 PF00892 EamA-like transporter family AFMDGAFA_02664 PF12833 Helix-turn-helix domain AFMDGAFA_02664 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term AFMDGAFA_02665 PF00171 Aldehyde dehydrogenase family AFMDGAFA_02669 PF00324 Amino acid permease AFMDGAFA_02670 PF04958 Arginine N-succinyltransferase beta subunit AFMDGAFA_02671 PF00202 Aminotransferase class-III AFMDGAFA_02672 PF01037 Lrp/AsnC ligand binding domain AFMDGAFA_02673 PF00171 Aldehyde dehydrogenase family AFMDGAFA_02675 PF07729 FCD domain AFMDGAFA_02675 PF00392 Bacterial regulatory proteins, gntR family AFMDGAFA_02677 PF00324 Amino acid permease AFMDGAFA_02678 PF01266 FAD dependent oxidoreductase AFMDGAFA_02679 PF00324 Amino acid permease AFMDGAFA_02685 PF03180 NlpA lipoprotein AFMDGAFA_02686 PF01494 FAD binding domain AFMDGAFA_02689 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFMDGAFA_02689 PF03466 LysR substrate binding domain AFMDGAFA_02690 PF01266 FAD dependent oxidoreductase AFMDGAFA_02691 PF01042 Endoribonuclease L-PSP AFMDGAFA_02699 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFMDGAFA_02699 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AFMDGAFA_02701 PF00764 Arginosuccinate synthase AFMDGAFA_02702 PF01590 GAF domain AFMDGAFA_02702 PF00563 EAL domain AFMDGAFA_02702 PF00990 Diguanylate cyclase, GGDEF domain AFMDGAFA_02703 PF01979 Amidohydrolase family AFMDGAFA_02704 PF00929 Exonuclease AFMDGAFA_02706 PF00593 TonB dependent receptor AFMDGAFA_02706 PF07715 TonB-dependent Receptor Plug Domain AFMDGAFA_02707 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AFMDGAFA_02707 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFMDGAFA_02708 PF00005 ABC transporter AFMDGAFA_02708 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AFMDGAFA_02709 PF12911 N-terminal TM domain of oligopeptide transport permease C AFMDGAFA_02709 PF00528 Binding-protein-dependent transport system inner membrane component AFMDGAFA_02710 PF00528 Binding-protein-dependent transport system inner membrane component AFMDGAFA_02711 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AFMDGAFA_02712 PF01464 Transglycosylase SLT domain AFMDGAFA_02712 PF01476 LysM domain AFMDGAFA_02712 PF01464 Transglycosylase SLT domain AFMDGAFA_02712 PF01476 LysM domain AFMDGAFA_02713 PF00929 Exonuclease AFMDGAFA_02715 PF09297 NADH pyrophosphatase zinc ribbon domain AFMDGAFA_02715 PF00293 NUDIX domain AFMDGAFA_02717 PF04972 BON domain AFMDGAFA_02718 PF02021 Uncharacterised protein family UPF0102 AFMDGAFA_02719 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AFMDGAFA_02721 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFMDGAFA_02721 PF03466 LysR substrate binding domain AFMDGAFA_02722 PF01810 LysE type translocator AFMDGAFA_02724 PF13411 MerR HTH family regulatory protein AFMDGAFA_02726 PF01494 FAD binding domain AFMDGAFA_02727 PF01494 FAD binding domain AFMDGAFA_02728 PF05195 Aminopeptidase P, N-terminal domain AFMDGAFA_02728 PF00557 Metallopeptidase family M24 AFMDGAFA_02736 PF01812 5-formyltetrahydrofolate cyclo-ligase family AFMDGAFA_02737 PF04355 SmpA / OmlA family AFMDGAFA_02737 PF00691 OmpA family AFMDGAFA_02738 PF03895 YadA-like membrane anchor domain AFMDGAFA_02738 PF05662 Coiled stalk of trimeric autotransporter adhesin AFMDGAFA_02738 PF13018 Extended Signal Peptide of Type V secretion system AFMDGAFA_02738 PF05658 YadA head domain repeat (2 copies) AFMDGAFA_02739 PF00004 ATPase family associated with various cellular activities (AAA) AFMDGAFA_02739 PF05362 Lon protease (S16) C-terminal proteolytic domain AFMDGAFA_02739 PF02190 ATP-dependent protease La (LON) substrate-binding domain AFMDGAFA_02740 PF02590 Predicted SPOUT methyltransferase AFMDGAFA_02741 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AFMDGAFA_02743 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AFMDGAFA_02743 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AFMDGAFA_02744 PF04060 Putative Fe-S cluster AFMDGAFA_02745 PF00730 HhH-GPD superfamily base excision DNA repair protein AFMDGAFA_02745 PF00633 Helix-hairpin-helix motif AFMDGAFA_02745 PF10576 Iron-sulfur binding domain of endonuclease III AFMDGAFA_02746 PF05191 Adenylate kinase, active site lid AFMDGAFA_02749 PF03717 Penicillin-binding Protein dimerisation domain AFMDGAFA_02749 PF00905 Penicillin binding protein transpeptidase domain AFMDGAFA_02752 PF02492 CobW/HypB/UreG, nucleotide-binding domain AFMDGAFA_02753 PF01730 UreF AFMDGAFA_02754 PF02814 UreE urease accessory protein, N-terminal domain AFMDGAFA_02754 PF05194 UreE urease accessory protein, C-terminal domain AFMDGAFA_02755 PF01979 Amidohydrolase family AFMDGAFA_02755 PF00449 Urease alpha-subunit, N-terminal domain AFMDGAFA_02758 PF00699 Urease beta subunit AFMDGAFA_02759 PF00547 Urease, gamma subunit AFMDGAFA_02760 PF01774 UreD urease accessory protein AFMDGAFA_02763 PF00463 Isocitrate lyase family AFMDGAFA_02764 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFMDGAFA_02764 PF03466 LysR substrate binding domain AFMDGAFA_02765 PF00571 CBS domain AFMDGAFA_02765 PF01595 Cyclin M transmembrane N-terminal domain AFMDGAFA_02765 PF03471 Transporter associated domain AFMDGAFA_02766 PF03600 Citrate transporter AFMDGAFA_02769 PF00009 Elongation factor Tu GTP binding domain AFMDGAFA_02770 PF01507 Phosphoadenosine phosphosulfate reductase family AFMDGAFA_02772 PF14052 Capsule assembly protein Wzi AFMDGAFA_02773 PF00152 tRNA synthetases class II (D, K and N) AFMDGAFA_02773 PF01336 OB-fold nucleic acid binding domain AFMDGAFA_02776 PF00301 Rubredoxin AFMDGAFA_02777 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFMDGAFA_02777 PF18113 Rubredoxin binding C-terminal domain AFMDGAFA_02778 PF00561 alpha/beta hydrolase fold AFMDGAFA_02779 PF03466 LysR substrate binding domain AFMDGAFA_02779 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFMDGAFA_02781 PF17941 Polyphosphate kinase C-terminal domain 1 AFMDGAFA_02781 PF13090 Polyphosphate kinase C-terminal domain 2 AFMDGAFA_02781 PF13089 Polyphosphate kinase N-terminal domain AFMDGAFA_02781 PF02503 Polyphosphate kinase middle domain AFMDGAFA_02782 PF00912 Transglycosylase AFMDGAFA_02783 PF01694 Rhomboid family AFMDGAFA_02784 PF02687 FtsX-like permease family AFMDGAFA_02785 PF00005 ABC transporter AFMDGAFA_02786 PF13472 GDSL-like Lipase/Acylhydrolase family AFMDGAFA_02787 PF00484 Carbonic anhydrase AFMDGAFA_02788 PF00561 alpha/beta hydrolase fold AFMDGAFA_02790 PF07715 TonB-dependent Receptor Plug Domain AFMDGAFA_02790 PF00593 TonB dependent receptor AFMDGAFA_02791 PF01521 Iron-sulphur cluster biosynthesis AFMDGAFA_02791 PF01106 NifU-like domain AFMDGAFA_02793 PF00884 Sulfatase AFMDGAFA_02794 PF03781 Sulfatase-modifying factor enzyme 1 AFMDGAFA_02797 PF00291 Pyridoxal-phosphate dependent enzyme AFMDGAFA_02798 PF01384 Phosphate transporter family AFMDGAFA_02800 PF02607 B12 binding domain AFMDGAFA_02800 PF02965 Vitamin B12 dependent methionine synthase, activation domain AFMDGAFA_02800 PF00809 Pterin binding enzyme AFMDGAFA_02800 PF02574 Homocysteine S-methyltransferase AFMDGAFA_02800 PF02310 B12 binding domain AFMDGAFA_02801 PF02779 Transketolase, pyrimidine binding domain AFMDGAFA_02801 PF02780 Transketolase, C-terminal domain AFMDGAFA_02802 PF00456 Transketolase, thiamine diphosphate binding domain AFMDGAFA_02803 PF07690 Major Facilitator Superfamily AFMDGAFA_02805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFMDGAFA_02805 PF03466 LysR substrate binding domain AFMDGAFA_02807 PF01263 Aldose 1-epimerase AFMDGAFA_02809 PF07690 Major Facilitator Superfamily AFMDGAFA_02810 PF12833 Helix-turn-helix domain AFMDGAFA_02810 PF02311 AraC-like ligand binding domain AFMDGAFA_02811 PF04960 Glutaminase AFMDGAFA_02812 PF01327 Polypeptide deformylase AFMDGAFA_02813 PF07690 Major Facilitator Superfamily AFMDGAFA_02815 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AFMDGAFA_02815 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFMDGAFA_02815 PF00205 Thiamine pyrophosphate enzyme, central domain AFMDGAFA_02816 PF00171 Aldehyde dehydrogenase family AFMDGAFA_02817 PF01958 Aspartate dehydrogenase, C-terminal AFMDGAFA_02817 PF03447 Homoserine dehydrogenase, NAD binding domain AFMDGAFA_02819 PF12697 Alpha/beta hydrolase family AFMDGAFA_02821 PF07690 Major Facilitator Superfamily AFMDGAFA_02822 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFMDGAFA_02822 PF14759 Reductase C-terminal AFMDGAFA_02823 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFMDGAFA_02825 PF00355 Rieske [2Fe-2S] domain AFMDGAFA_02825 PF19112 Vanillate O-demethylase oxygenase C-terminal domain AFMDGAFA_02827 PF00355 Rieske [2Fe-2S] domain AFMDGAFA_02828 PF01614 Bacterial transcriptional regulator AFMDGAFA_02828 PF09339 IclR helix-turn-helix domain AFMDGAFA_02831 PF00378 Enoyl-CoA hydratase/isomerase AFMDGAFA_02833 PF00535 Glycosyl transferase family 2 AFMDGAFA_02834 PF01522 Polysaccharide deacetylase AFMDGAFA_02834 PF14883 Hypothetical glycosyl hydrolase family 13 AFMDGAFA_02835 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AFMDGAFA_02836 PF07152 YaeQ protein AFMDGAFA_02837 PF00375 Sodium:dicarboxylate symporter family AFMDGAFA_02838 PF02492 CobW/HypB/UreG, nucleotide-binding domain AFMDGAFA_02838 PF07683 Cobalamin synthesis protein cobW C-terminal domain AFMDGAFA_02840 PF03061 Thioesterase superfamily AFMDGAFA_02842 PF02028 BCCT, betaine/carnitine/choline family transporter AFMDGAFA_02843 PF02028 BCCT, betaine/carnitine/choline family transporter AFMDGAFA_02844 PF13977 BetI-type transcriptional repressor, C-terminal AFMDGAFA_02844 PF00440 Bacterial regulatory proteins, tetR family AFMDGAFA_02845 PF00171 Aldehyde dehydrogenase family AFMDGAFA_02846 PF00732 GMC oxidoreductase AFMDGAFA_02846 PF05199 GMC oxidoreductase AFMDGAFA_02847 PF06039 Malate:quinone oxidoreductase (Mqo) AFMDGAFA_02849 PF02574 Homocysteine S-methyltransferase AFMDGAFA_02850 PF13520 Amino acid permease AFMDGAFA_02856 PF00701 Dihydrodipicolinate synthetase family AFMDGAFA_02857 PF00083 Sugar (and other) transporter AFMDGAFA_02867 PF07690 Major Facilitator Superfamily AFMDGAFA_02868 PF13533 Biotin-lipoyl like AFMDGAFA_02869 PF03061 Thioesterase superfamily AFMDGAFA_02870 PF00490 Delta-aminolevulinic acid dehydratase AFMDGAFA_02871 PF01266 FAD dependent oxidoreductase AFMDGAFA_02872 PF08338 Domain of unknown function (DUF1731) AFMDGAFA_02872 PF01370 NAD dependent epimerase/dehydratase family AFMDGAFA_02876 PF00149 Calcineurin-like phosphoesterase AFMDGAFA_02876 PF12320 Type 5 capsule protein repressor C-terminal domain AFMDGAFA_02878 PF01168 Alanine racemase, N-terminal domain AFMDGAFA_02879 PF00437 Type II/IV secretion system protein AFMDGAFA_02880 PF00437 Type II/IV secretion system protein AFMDGAFA_02881 PF01475 Ferric uptake regulator family AFMDGAFA_02882 PF04355 SmpA / OmlA family AFMDGAFA_02883 PF03658 RnfH family Ubiquitin AFMDGAFA_02885 PF01814 Hemerythrin HHE cation binding domain AFMDGAFA_02886 PF13230 Glutamine amidotransferases class-II AFMDGAFA_02888 PF00696 Amino acid kinase family AFMDGAFA_02889 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AFMDGAFA_02889 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AFMDGAFA_02889 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AFMDGAFA_02889 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AFMDGAFA_02890 PF00692 dUTPase AFMDGAFA_02891 PF00580 UvrD/REP helicase N-terminal domain AFMDGAFA_02891 PF13361 UvrD-like helicase C-terminal domain AFMDGAFA_02893 PF13488 Glycine zipper AFMDGAFA_02893 PF00691 OmpA family AFMDGAFA_02894 PF01553 Acyltransferase AFMDGAFA_02896 PF03775 Septum formation inhibitor MinC, C-terminal domain AFMDGAFA_02896 PF05209 Septum formation inhibitor MinC, N-terminal domain AFMDGAFA_02897 PF13614 AAA domain AFMDGAFA_02898 PF03776 Septum formation topological specificity factor MinE AFMDGAFA_02900 PF01810 LysE type translocator AFMDGAFA_02901 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AFMDGAFA_02901 PF17854 FtsK alpha domain AFMDGAFA_02901 PF09397 Ftsk gamma domain AFMDGAFA_02901 PF01580 FtsK/SpoIIIE family AFMDGAFA_02902 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFMDGAFA_02903 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AFMDGAFA_02904 PF04377 Arginine-tRNA-protein transferase, C terminus AFMDGAFA_02904 PF04376 Arginine-tRNA-protein transferase, N terminus AFMDGAFA_02905 PF00583 Acetyltransferase (GNAT) family AFMDGAFA_02908 PF00009 Elongation factor Tu GTP binding domain AFMDGAFA_02908 PF03144 Elongation factor Tu domain 2 AFMDGAFA_02908 PF03143 Elongation factor Tu C-terminal domain AFMDGAFA_02909 PF00679 Elongation factor G C-terminus AFMDGAFA_02909 PF14492 Elongation Factor G, domain III AFMDGAFA_02909 PF03764 Elongation factor G, domain IV AFMDGAFA_02909 PF00009 Elongation factor Tu GTP binding domain AFMDGAFA_02909 PF03144 Elongation factor Tu domain 2 AFMDGAFA_02910 PF00177 Ribosomal protein S7p/S5e AFMDGAFA_02911 PF00164 Ribosomal protein S12/S23 AFMDGAFA_02913 PF02801 Beta-ketoacyl synthase, C-terminal domain AFMDGAFA_02913 PF00109 Beta-ketoacyl synthase, N-terminal domain AFMDGAFA_02914 PF03653 Uncharacterised protein family (UPF0093) AFMDGAFA_02915 PF02678 Pirin AFMDGAFA_02915 PF05726 Pirin C-terminal cupin domain AFMDGAFA_02917 PF00795 Carbon-nitrogen hydrolase AFMDGAFA_02917 PF02540 NAD synthase AFMDGAFA_02920 PF00970 Oxidoreductase FAD-binding domain AFMDGAFA_02920 PF00111 2Fe-2S iron-sulfur cluster binding domain AFMDGAFA_02920 PF00175 Oxidoreductase NAD-binding domain AFMDGAFA_02921 PF00171 Aldehyde dehydrogenase family AFMDGAFA_02922 PF00355 Rieske [2Fe-2S] domain AFMDGAFA_02922 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AFMDGAFA_02923 PF07859 alpha/beta hydrolase fold AFMDGAFA_02924 PF02028 BCCT, betaine/carnitine/choline family transporter AFMDGAFA_02925 PF00180 Isocitrate/isopropylmalate dehydrogenase AFMDGAFA_02926 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFMDGAFA_02926 PF03466 LysR substrate binding domain AFMDGAFA_02930 PF00037 4Fe-4S binding domain AFMDGAFA_02931 PF01467 Cytidylyltransferase-like AFMDGAFA_02932 PF01668 SmpB protein AFMDGAFA_02933 PF03358 NADPH-dependent FMN reductase AFMDGAFA_02934 PF02578 Multi-copper polyphenol oxidoreductase laccase AFMDGAFA_02935 PF00849 RNA pseudouridylate synthase AFMDGAFA_02935 PF01479 S4 domain AFMDGAFA_02936 PF13525 Outer membrane lipoprotein AFMDGAFA_02937 PF10410 DnaB-helicase binding domain of primase AFMDGAFA_02937 PF08278 DNA primase DnaG DnaB-binding AFMDGAFA_02937 PF08275 DNA primase catalytic core, N-terminal domain AFMDGAFA_02937 PF01807 CHC2 zinc finger AFMDGAFA_02938 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AFMDGAFA_02938 PF01488 Shikimate / quinate 5-dehydrogenase AFMDGAFA_02938 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AFMDGAFA_02940 PF03550 Outer membrane lipoprotein LolB AFMDGAFA_02945 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AFMDGAFA_02945 PF14572 Phosphoribosyl synthetase-associated domain AFMDGAFA_02946 PF01386 Ribosomal L25p family AFMDGAFA_02947 PF01195 Peptidyl-tRNA hydrolase AFMDGAFA_02948 PF02261 Aspartate decarboxylase AFMDGAFA_02952 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AFMDGAFA_02954 PF08543 Phosphomethylpyrimidine kinase AFMDGAFA_02954 PF03070 TENA/THI-4/PQQC family AFMDGAFA_02954 PF02581 Thiamine monophosphate synthase AFMDGAFA_02955 PF04972 BON domain AFMDGAFA_02955 PF01476 LysM domain AFMDGAFA_02956 PF00550 Phosphopantetheine attachment site AFMDGAFA_02958 PF00698 Acyl transferase domain AFMDGAFA_02959 PF01783 Ribosomal L32p protein family AFMDGAFA_02960 PF02620 Large ribosomal RNA subunit accumulation protein YceD AFMDGAFA_02961 PF04315 Elongation factor P hydroxylase AFMDGAFA_02962 PF01300 Telomere recombination AFMDGAFA_02963 PF02616 Segregation and condensation protein ScpA AFMDGAFA_02964 PF04079 Segregation and condensation complex subunit ScpB AFMDGAFA_02965 PF01479 S4 domain AFMDGAFA_02965 PF00849 RNA pseudouridylate synthase AFMDGAFA_02968 PF00155 Aminotransferase class I and II AFMDGAFA_02969 PF06968 Biotin and Thiamin Synthesis associated domain AFMDGAFA_02969 PF00202 Aminotransferase class-III AFMDGAFA_02969 PF04055 Radical SAM superfamily AFMDGAFA_02970 PF08241 Methyltransferase domain AFMDGAFA_02970 PF12697 Alpha/beta hydrolase family AFMDGAFA_02971 PF02358 Trehalose-phosphatase AFMDGAFA_02972 PF00982 Glycosyltransferase family 20 AFMDGAFA_02973 PF07690 Major Facilitator Superfamily AFMDGAFA_02974 PF00210 Ferritin-like domain AFMDGAFA_02975 PF12826 Helix-hairpin-helix motif AFMDGAFA_02975 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AFMDGAFA_02975 PF01653 NAD-dependent DNA ligase adenylation domain AFMDGAFA_02975 PF00533 BRCA1 C Terminus (BRCT) domain AFMDGAFA_02975 PF03120 NAD-dependent DNA ligase OB-fold domain AFMDGAFA_02977 PF06470 SMC proteins Flexible Hinge Domain AFMDGAFA_02977 PF02463 RecF/RecN/SMC N terminal domain AFMDGAFA_02979 PF01925 Sulfite exporter TauE/SafE AFMDGAFA_02981 PF03309 Type III pantothenate kinase AFMDGAFA_02982 PF00448 SRP54-type protein, GTPase domain AFMDGAFA_02982 PF02881 SRP54-type protein, helical bundle domain AFMDGAFA_02982 PF02978 Signal peptide binding domain AFMDGAFA_02984 PF01207 Dihydrouridine synthase (Dus) AFMDGAFA_02990 PF00692 dUTPase AFMDGAFA_02993 PF01048 Phosphorylase superfamily AFMDGAFA_02994 PF10609 NUBPL iron-transfer P-loop NTPase AFMDGAFA_02996 PF01588 Putative tRNA binding domain AFMDGAFA_02996 PF09334 tRNA synthetases class I (M) AFMDGAFA_02996 PF19303 Anticodon binding domain of methionyl tRNA ligase AFMDGAFA_03001 PF13533 Biotin-lipoyl like AFMDGAFA_03002 PF00291 Pyridoxal-phosphate dependent enzyme AFMDGAFA_03005 PF05552 Conserved TM helix AFMDGAFA_03008 PF00970 Oxidoreductase FAD-binding domain AFMDGAFA_03008 PF00175 Oxidoreductase NAD-binding domain AFMDGAFA_03009 PF03466 LysR substrate binding domain AFMDGAFA_03009 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFMDGAFA_03011 PF00313 'Cold-shock' DNA-binding domain AFMDGAFA_03013 PF00361 Proton-conducting membrane transporter AFMDGAFA_03014 PF00361 Proton-conducting membrane transporter AFMDGAFA_03015 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AFMDGAFA_03015 PF00361 Proton-conducting membrane transporter AFMDGAFA_03016 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AFMDGAFA_03017 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AFMDGAFA_03018 PF12838 4Fe-4S dicluster domain AFMDGAFA_03019 PF00146 NADH dehydrogenase AFMDGAFA_03020 PF00384 Molybdopterin oxidoreductase AFMDGAFA_03020 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AFMDGAFA_03020 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AFMDGAFA_03021 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AFMDGAFA_03021 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AFMDGAFA_03023 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AFMDGAFA_03023 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AFMDGAFA_03024 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AFMDGAFA_03025 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AFMDGAFA_03026 PF00990 Diguanylate cyclase, GGDEF domain AFMDGAFA_03026 PF17151 Periplasmic sensor domain AFMDGAFA_03028 PF00512 His Kinase A (phospho-acceptor) domain AFMDGAFA_03028 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFMDGAFA_03028 PF00672 HAMP domain AFMDGAFA_03029 PF00486 Transcriptional regulatory protein, C terminal AFMDGAFA_03029 PF00072 Response regulator receiver domain AFMDGAFA_03030 PF00317 Ribonucleotide reductase, all-alpha domain AFMDGAFA_03030 PF03477 ATP cone domain AFMDGAFA_03030 PF02867 Ribonucleotide reductase, barrel domain AFMDGAFA_03032 PF00268 Ribonucleotide reductase, small chain AFMDGAFA_03035 PF17074 Darcynin, domain of unknown function AFMDGAFA_03036 PF06594 Haemolysin-type calcium binding protein related domain AFMDGAFA_03036 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) AFMDGAFA_03038 PF17074 Darcynin, domain of unknown function AFMDGAFA_03044 PF01613 Flavin reductase like domain AFMDGAFA_03045 PF01717 Cobalamin-independent synthase, Catalytic domain AFMDGAFA_03047 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFMDGAFA_03047 PF03466 LysR substrate binding domain AFMDGAFA_03048 PF01810 LysE type translocator AFMDGAFA_03050 PF12833 Helix-turn-helix domain AFMDGAFA_03050 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term AFMDGAFA_03051 PF01546 Peptidase family M20/M25/M40 AFMDGAFA_03051 PF07687 Peptidase dimerisation domain AFMDGAFA_03053 PF03466 LysR substrate binding domain AFMDGAFA_03053 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFMDGAFA_03054 PF07690 Major Facilitator Superfamily AFMDGAFA_03056 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFMDGAFA_03056 PF03466 LysR substrate binding domain AFMDGAFA_03057 PF00890 FAD binding domain AFMDGAFA_03057 PF04205 FMN-binding domain AFMDGAFA_03057 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AFMDGAFA_03059 PF02515 CoA-transferase family III AFMDGAFA_03060 PF07690 Major Facilitator Superfamily AFMDGAFA_03061 PF02770 Acyl-CoA dehydrogenase, middle domain AFMDGAFA_03061 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFMDGAFA_03061 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFMDGAFA_03062 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFMDGAFA_03062 PF03466 LysR substrate binding domain AFMDGAFA_03063 PF08240 Alcohol dehydrogenase GroES-like domain AFMDGAFA_03063 PF00107 Zinc-binding dehydrogenase AFMDGAFA_03064 PF00962 Adenosine deaminase AFMDGAFA_03069 PF02445 Quinolinate synthetase A protein AFMDGAFA_03070 PF01960 ArgJ family AFMDGAFA_03071 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AFMDGAFA_03071 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AFMDGAFA_03072 PF00893 Small Multidrug Resistance protein AFMDGAFA_03075 PF00394 Multicopper oxidase AFMDGAFA_03075 PF07731 Multicopper oxidase AFMDGAFA_03075 PF07732 Multicopper oxidase AFMDGAFA_03078 PF00834 Ribulose-phosphate 3 epimerase family AFMDGAFA_03080 PF00756 Putative esterase AFMDGAFA_03082 PF04445 Putative SAM-dependent methyltransferase AFMDGAFA_03083 PF00814 tRNA N6-adenosine threonylcarbamoyltransferase AFMDGAFA_03084 PF00132 Bacterial transferase hexapeptide (six repeats) AFMDGAFA_03085 PF00293 NUDIX domain AFMDGAFA_03092 PF03412 Peptidase C39 family AFMDGAFA_03094 PF04715 Anthranilate synthase component I, N terminal region AFMDGAFA_03094 PF00425 chorismate binding enzyme AFMDGAFA_03095 PF00155 Aminotransferase class I and II AFMDGAFA_03096 PF00815 Histidinol dehydrogenase AFMDGAFA_03097 PF01634 ATP phosphoribosyltransferase AFMDGAFA_03098 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AFMDGAFA_03099 PF01722 BolA-like protein AFMDGAFA_03100 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AFMDGAFA_03101 PF00309 Sigma-54 factor, Activator interacting domain (AID) AFMDGAFA_03101 PF04552 Sigma-54, DNA binding domain AFMDGAFA_03101 PF04963 Sigma-54 factor, core binding domain AFMDGAFA_03110 PF00795 Carbon-nitrogen hydrolase AFMDGAFA_03112 PF01047 MarR family AFMDGAFA_03113 PF02566 OsmC-like protein AFMDGAFA_03114 PF00437 Type II/IV secretion system protein AFMDGAFA_03118 PF01367 5'-3' exonuclease, C-terminal SAM fold AFMDGAFA_03118 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AFMDGAFA_03118 PF00476 DNA polymerase family A AFMDGAFA_03118 PF01612 3'-5' exonuclease AFMDGAFA_03119 PF02325 YGGT family AFMDGAFA_03120 PF14748 Pyrroline-5-carboxylate reductase dimerisation AFMDGAFA_03120 PF03807 NADP oxidoreductase coenzyme F420-dependent AFMDGAFA_03121 PF09179 TilS substrate binding domain AFMDGAFA_03121 PF11734 TilS substrate C-terminal domain AFMDGAFA_03121 PF01171 PP-loop family AFMDGAFA_03122 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AFMDGAFA_03123 PF02541 Ppx/GppA phosphatase family AFMDGAFA_03124 PF00085 Thioredoxin AFMDGAFA_03125 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AFMDGAFA_03125 PF07498 Rho termination factor, N-terminal domain AFMDGAFA_03125 PF07497 Rho termination factor, RNA-binding domain AFMDGAFA_03127 PF00216 Bacterial DNA-binding protein AFMDGAFA_03128 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AFMDGAFA_03128 PF01588 Putative tRNA binding domain AFMDGAFA_03128 PF03483 B3/4 domain AFMDGAFA_03128 PF03484 tRNA synthetase B5 domain AFMDGAFA_03128 PF03147 Ferredoxin-fold anticodon binding domain AFMDGAFA_03129 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AFMDGAFA_03129 PF01409 tRNA synthetases class II core domain (F) AFMDGAFA_03132 PF08719 NADAR domain AFMDGAFA_03134 PF00453 Ribosomal protein L20 AFMDGAFA_03135 PF01632 Ribosomal protein L35 AFMDGAFA_03136 PF07690 Major Facilitator Superfamily AFMDGAFA_03137 PF09335 SNARE associated Golgi protein AFMDGAFA_03138 PF00043 Glutathione S-transferase, C-terminal domain AFMDGAFA_03138 PF02798 Glutathione S-transferase, N-terminal domain AFMDGAFA_03139 PF00707 Translation initiation factor IF-3, C-terminal domain AFMDGAFA_03139 PF05198 Translation initiation factor IF-3, N-terminal domain AFMDGAFA_03140 PF02824 TGS domain AFMDGAFA_03140 PF03129 Anticodon binding domain AFMDGAFA_03140 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AFMDGAFA_03140 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AFMDGAFA_03141 PF00501 AMP-binding enzyme AFMDGAFA_03141 PF13193 AMP-binding enzyme C-terminal domain AFMDGAFA_03142 PF04751 Protein of unknown function (DUF615) AFMDGAFA_03143 PF00381 PTS HPr component phosphorylation site AFMDGAFA_03144 PF03668 P-loop ATPase protein family AFMDGAFA_03145 PF02569 Pantoate-beta-alanine ligase AFMDGAFA_03146 PF02548 Ketopantoate hydroxymethyltransferase AFMDGAFA_03147 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AFMDGAFA_03148 PF01743 Poly A polymerase head domain AFMDGAFA_03148 PF12626 Polymerase A arginine-rich C-terminus AFMDGAFA_03148 PF12627 Probable RNA and SrmB- binding site of polymerase A AFMDGAFA_03150 PF03819 MazG nucleotide pyrophosphohydrolase domain AFMDGAFA_03152 PF13291 ACT domain AFMDGAFA_03152 PF19296 RelA/SpoT, AH and RIS domains AFMDGAFA_03152 PF04607 Region found in RelA / SpoT proteins AFMDGAFA_03152 PF02824 TGS domain AFMDGAFA_03153 PF05958 tRNA (Uracil-5-)-methyltransferase AFMDGAFA_03154 PF00136 DNA polymerase family B AFMDGAFA_03154 PF03104 DNA polymerase family B, exonuclease domain AFMDGAFA_03155 PF00291 Pyridoxal-phosphate dependent enzyme AFMDGAFA_03156 PF01627 Hpt domain AFMDGAFA_03156 PF09984 Single cache domain 4 AFMDGAFA_03156 PF00072 Response regulator receiver domain AFMDGAFA_03156 PF00512 His Kinase A (phospho-acceptor) domain AFMDGAFA_03156 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFMDGAFA_03156 PF00672 HAMP domain AFMDGAFA_03157 PF00378 Enoyl-CoA hydratase/isomerase AFMDGAFA_03158 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AFMDGAFA_03158 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AFMDGAFA_03159 PF01261 Xylose isomerase-like TIM barrel AFMDGAFA_03161 PF00106 short chain dehydrogenase AFMDGAFA_03162 PF02233 NAD(P) transhydrogenase beta subunit AFMDGAFA_03163 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch AFMDGAFA_03164 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AFMDGAFA_03164 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AFMDGAFA_03165 PF00892 EamA-like transporter family AFMDGAFA_03167 PF07690 Major Facilitator Superfamily AFMDGAFA_03168 PF01207 Dihydrouridine synthase (Dus) AFMDGAFA_03170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFMDGAFA_03170 PF03466 LysR substrate binding domain AFMDGAFA_03171 PF00899 ThiF family AFMDGAFA_03172 PF00694 Aconitase C-terminal domain AFMDGAFA_03172 PF00330 Aconitase family (aconitate hydratase) AFMDGAFA_03173 PF01026 TatD related DNase AFMDGAFA_03176 PF16658 Class II release factor RF3, C-terminal domain AFMDGAFA_03176 PF00009 Elongation factor Tu GTP binding domain AFMDGAFA_03176 PF03144 Elongation factor Tu domain 2 AFMDGAFA_03180 PF13296 Putative type VI secretion system Rhs element Vgr AFMDGAFA_03180 PF04717 Type VI secretion system/phage-baseplate injector OB domain AFMDGAFA_03180 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) AFMDGAFA_03185 PF00563 EAL domain AFMDGAFA_03185 PF03707 Bacterial signalling protein N terminal repeat AFMDGAFA_03185 PF00990 Diguanylate cyclase, GGDEF domain AFMDGAFA_03186 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AFMDGAFA_03186 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AFMDGAFA_03187 PF10369 Small subunit of acetolactate synthase AFMDGAFA_03188 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AFMDGAFA_03188 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFMDGAFA_03188 PF00205 Thiamine pyrophosphate enzyme, central domain AFMDGAFA_03190 PF08264 Anticodon-binding domain of tRNA ligase AFMDGAFA_03190 PF00133 tRNA synthetases class I (I, L, M and V) AFMDGAFA_03190 PF13603 Leucyl-tRNA synthetase, Domain 2 AFMDGAFA_03190 PF09334 tRNA synthetases class I (M) AFMDGAFA_03193 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AFMDGAFA_03194 PF12704 MacB-like periplasmic core domain AFMDGAFA_03194 PF00005 ABC transporter AFMDGAFA_03194 PF02687 FtsX-like permease family AFMDGAFA_03195 PF02321 Outer membrane efflux protein AFMDGAFA_03198 PF00929 Exonuclease AFMDGAFA_03199 PF03193 RsgA GTPase AFMDGAFA_03201 PF00462 Glutaredoxin AFMDGAFA_03202 PF02556 Preprotein translocase subunit SecB AFMDGAFA_03205 PF02801 Beta-ketoacyl synthase, C-terminal domain AFMDGAFA_03205 PF00109 Beta-ketoacyl synthase, N-terminal domain AFMDGAFA_03208 PF00109 Beta-ketoacyl synthase, N-terminal domain AFMDGAFA_03208 PF02801 Beta-ketoacyl synthase, C-terminal domain AFMDGAFA_03210 PF04820 Tryptophan halogenase AFMDGAFA_03214 PF00221 Aromatic amino acid lyase AFMDGAFA_03216 PF00535 Glycosyl transferase family 2 AFMDGAFA_03217 PF13193 AMP-binding enzyme C-terminal domain AFMDGAFA_03217 PF00501 AMP-binding enzyme AFMDGAFA_03219 PF00550 Phosphopantetheine attachment site AFMDGAFA_03220 PF00550 Phosphopantetheine attachment site AFMDGAFA_03223 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AFMDGAFA_03223 PF01926 50S ribosome-binding GTPase AFMDGAFA_03224 PF13360 PQQ-like domain AFMDGAFA_03226 PF03129 Anticodon binding domain AFMDGAFA_03226 PF13393 Histidyl-tRNA synthetase AFMDGAFA_03227 PF04551 GcpE protein AFMDGAFA_03228 PF13464 Domain of unknown function (DUF4115) AFMDGAFA_03230 PF04055 Radical SAM superfamily AFMDGAFA_03231 PF00334 Nucleoside diphosphate kinase AFMDGAFA_03232 PF04384 Iron-sulphur cluster assembly AFMDGAFA_03233 PF01569 PAP2 superfamily AFMDGAFA_03234 PF13439 Glycosyltransferase Family 4 AFMDGAFA_03234 PF00534 Glycosyl transferases group 1 AFMDGAFA_03235 PF00595 PDZ domain AFMDGAFA_03235 PF11818 C-terminal domain of tail specific protease (DUF3340) AFMDGAFA_03235 PF03572 Peptidase family S41 AFMDGAFA_03235 PF17804 Tail specific protease N-terminal domain AFMDGAFA_03236 PF00933 Glycosyl hydrolase family 3 N terminal domain AFMDGAFA_03238 PF00561 alpha/beta hydrolase fold AFMDGAFA_03239 PF00171 Aldehyde dehydrogenase family AFMDGAFA_03240 PF00171 Aldehyde dehydrogenase family AFMDGAFA_03241 PF01202 Shikimate kinase AFMDGAFA_03242 PF02447 GntP family permease AFMDGAFA_03243 PF01081 KDPG and KHG aldolase AFMDGAFA_03244 PF00920 Dehydratase family AFMDGAFA_03245 PF00871 Acetokinase family AFMDGAFA_03246 PF07085 DRTGG domain AFMDGAFA_03246 PF01515 Phosphate acetyl/butaryl transferase AFMDGAFA_03247 PF05681 Fumarate hydratase (Fumerase) AFMDGAFA_03247 PF05683 Fumarase C-terminus AFMDGAFA_03250 PF07724 AAA domain (Cdc48 subfamily) AFMDGAFA_03250 PF10431 C-terminal, D2-small domain, of ClpB protein AFMDGAFA_03250 PF06689 ClpX C4-type zinc finger AFMDGAFA_03251 PF00574 Clp protease AFMDGAFA_03252 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AFMDGAFA_03252 PF05698 Bacterial trigger factor protein (TF) C-terminus AFMDGAFA_03252 PF05697 Bacterial trigger factor protein (TF) AFMDGAFA_03253 PF00593 TonB dependent receptor AFMDGAFA_03253 PF07715 TonB-dependent Receptor Plug Domain AFMDGAFA_03254 PF13640 2OG-Fe(II) oxygenase superfamily AFMDGAFA_03254 PF18331 PKHD-type hydroxylase C-terminal domain AFMDGAFA_03255 PF00682 HMGL-like AFMDGAFA_03255 PF08502 LeuA allosteric (dimerisation) domain AFMDGAFA_03256 PF00561 alpha/beta hydrolase fold AFMDGAFA_03257 PF00561 alpha/beta hydrolase fold AFMDGAFA_03257 PF07021 Methionine biosynthesis protein MetW AFMDGAFA_03259 PF01725 Ham1 family AFMDGAFA_03261 PF02416 mttA/Hcf106 family AFMDGAFA_03262 PF02416 mttA/Hcf106 family AFMDGAFA_03263 PF00902 Sec-independent protein translocase protein (TatC) AFMDGAFA_03267 PF01790 Prolipoprotein diacylglyceryl transferase AFMDGAFA_03270 PF00303 Thymidylate synthase AFMDGAFA_03271 PF00186 Dihydrofolate reductase AFMDGAFA_03273 PF01625 Peptide methionine sulfoxide reductase AFMDGAFA_03275 PF01618 MotA/TolQ/ExbB proton channel family AFMDGAFA_03277 PF01842 ACT domain AFMDGAFA_03277 PF00551 Formyl transferase AFMDGAFA_03279 PF00171 Aldehyde dehydrogenase family AFMDGAFA_03280 PF00830 Ribosomal L28 family AFMDGAFA_03281 PF00471 Ribosomal protein L33 AFMDGAFA_03282 PF02254 TrkA-N domain AFMDGAFA_03282 PF00999 Sodium/hydrogen exchanger family AFMDGAFA_03286 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) AFMDGAFA_03287 PF13361 UvrD-like helicase C-terminal domain AFMDGAFA_03287 PF00580 UvrD/REP helicase N-terminal domain AFMDGAFA_03290 PF08272 Topoisomerase I zinc-ribbon-like AFMDGAFA_03290 PF01131 DNA topoisomerase AFMDGAFA_03290 PF01751 Toprim domain AFMDGAFA_03290 PF01396 Topoisomerase DNA binding C4 zinc finger AFMDGAFA_03292 PF01638 HxlR-like helix-turn-helix AFMDGAFA_03293 PF00107 Zinc-binding dehydrogenase AFMDGAFA_03293 PF08240 Alcohol dehydrogenase GroES-like domain AFMDGAFA_03294 PF04102 SlyX AFMDGAFA_03295 PF12848 ABC transporter AFMDGAFA_03295 PF16326 ABC transporter C-terminal domain AFMDGAFA_03295 PF00005 ABC transporter AFMDGAFA_03296 PF01810 LysE type translocator AFMDGAFA_03297 PF03279 Bacterial lipid A biosynthesis acyltransferase AFMDGAFA_03299 PF00375 Sodium:dicarboxylate symporter family AFMDGAFA_03301 PF01118 Semialdehyde dehydrogenase, NAD binding domain AFMDGAFA_03301 PF02774 Semialdehyde dehydrogenase, dimerisation domain AFMDGAFA_03305 PF01416 tRNA pseudouridine synthase AFMDGAFA_03307 PF01176 Translation initiation factor 1A / IF-1 AFMDGAFA_03310 PF00180 Isocitrate/isopropylmalate dehydrogenase AFMDGAFA_03312 PF00694 Aconitase C-terminal domain AFMDGAFA_03313 PF00330 Aconitase family (aconitate hydratase) AFMDGAFA_03315 PF03466 LysR substrate binding domain AFMDGAFA_03315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFMDGAFA_03317 PF00293 NUDIX domain AFMDGAFA_03318 PF01590 GAF domain AFMDGAFA_03318 PF05524 PEP-utilising enzyme, N-terminal AFMDGAFA_03318 PF00391 PEP-utilising enzyme, mobile domain AFMDGAFA_03318 PF02896 PEP-utilising enzyme, PEP-binding domain AFMDGAFA_03319 PF00141 Peroxidase AFMDGAFA_03320 PF12706 Beta-lactamase superfamily domain AFMDGAFA_03321 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFMDGAFA_03321 PF03466 LysR substrate binding domain AFMDGAFA_03323 PF02798 Glutathione S-transferase, N-terminal domain AFMDGAFA_03324 PF13280 WYL domain AFMDGAFA_03324 PF08279 HTH domain AFMDGAFA_03325 PF13419 Haloacid dehalogenase-like hydrolase AFMDGAFA_03326 PF00849 RNA pseudouridylate synthase AFMDGAFA_03326 PF01479 S4 domain AFMDGAFA_03327 PF12111 Polyribonucleotide phosphorylase C terminal AFMDGAFA_03327 PF00575 S1 RNA binding domain AFMDGAFA_03327 PF10150 Ribonuclease E/G family AFMDGAFA_03328 PF13193 AMP-binding enzyme C-terminal domain AFMDGAFA_03328 PF00501 AMP-binding enzyme AFMDGAFA_03331 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFMDGAFA_03331 PF03466 LysR substrate binding domain AFMDGAFA_03333 PF04055 Radical SAM superfamily AFMDGAFA_03333 PF06969 HemN C-terminal domain AFMDGAFA_03335 PF01554 MatE AFMDGAFA_03336 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFMDGAFA_03336 PF02770 Acyl-CoA dehydrogenase, middle domain AFMDGAFA_03336 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AFMDGAFA_03337 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AFMDGAFA_03337 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFMDGAFA_03338 PF03109 ABC1 atypical kinase-like domain AFMDGAFA_03339 PF01197 Ribosomal protein L31 AFMDGAFA_03341 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AFMDGAFA_03344 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFMDGAFA_03344 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AFMDGAFA_03344 PF13247 4Fe-4S dicluster domain AFMDGAFA_03346 PF03884 DNA gyrase inhibitor YacG AFMDGAFA_03347 PF00753 Metallo-beta-lactamase superfamily AFMDGAFA_03348 PF00762 Ferrochelatase AFMDGAFA_03350 PF01177 Asp/Glu/Hydantoin racemase AFMDGAFA_03354 PF01206 Sulfurtransferase TusA AFMDGAFA_03355 PF00571 CBS domain AFMDGAFA_03355 PF03471 Transporter associated domain AFMDGAFA_03356 PF00795 Carbon-nitrogen hydrolase AFMDGAFA_03356 PF20154 Apolipoprotein N-acyltransferase N-terminal domain AFMDGAFA_03357 PF01588 Putative tRNA binding domain AFMDGAFA_03359 PF07963 Prokaryotic N-terminal methylation motif AFMDGAFA_03359 PF08334 Type II secretion system (T2SS), protein G AFMDGAFA_03360 PF00482 Type II secretion system (T2SS), protein F AFMDGAFA_03361 PF00270 DEAD/DEAH box helicase AFMDGAFA_03361 PF00271 Helicase conserved C-terminal domain AFMDGAFA_03361 PF17764 3'DNA-binding domain (3'BD) AFMDGAFA_03361 PF18074 Primosomal protein N C-terminal domain AFMDGAFA_03361 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AFMDGAFA_03362 PF02254 TrkA-N domain AFMDGAFA_03362 PF00999 Sodium/hydrogen exchanger family AFMDGAFA_03363 PF01430 Hsp33 protein AFMDGAFA_03365 PF00226 DnaJ domain AFMDGAFA_03365 PF01556 DnaJ C terminal domain AFMDGAFA_03367 PF01544 CorA-like Mg2+ transporter protein AFMDGAFA_03368 PF00575 S1 RNA binding domain AFMDGAFA_03368 PF00013 KH domain AFMDGAFA_03368 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AFMDGAFA_03368 PF01138 3' exoribonuclease family, domain 1 AFMDGAFA_03368 PF03725 3' exoribonuclease family, domain 2 AFMDGAFA_03369 PF00312 Ribosomal protein S15 AFMDGAFA_03371 PF00144 Beta-lactamase AFMDGAFA_03372 PF13538 UvrD-like helicase C-terminal domain AFMDGAFA_03373 PF12705 PD-(D/E)XK nuclease superfamily AFMDGAFA_03373 PF00580 UvrD/REP helicase N-terminal domain AFMDGAFA_03373 PF13361 UvrD-like helicase C-terminal domain AFMDGAFA_03374 PF17946 RecC C-terminal domain AFMDGAFA_03376 PF03976 Polyphosphate kinase 2 (PPK2) AFMDGAFA_03378 PF01209 ubiE/COQ5 methyltransferase family AFMDGAFA_03380 PF03109 ABC1 atypical kinase-like domain AFMDGAFA_03381 PF01494 FAD binding domain AFMDGAFA_03382 PF01502 Phosphoribosyl-AMP cyclohydrolase AFMDGAFA_03385 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AFMDGAFA_03385 PF00361 Proton-conducting membrane transporter AFMDGAFA_03385 PF20501 MBH, subunit E AFMDGAFA_03385 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter AFMDGAFA_03385 PF13244 MBH, subunit D AFMDGAFA_03386 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AFMDGAFA_03387 PF00361 Proton-conducting membrane transporter AFMDGAFA_03388 PF01899 Na+/H+ ion antiporter subunit AFMDGAFA_03389 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) AFMDGAFA_03390 PF03334 Na+/H+ antiporter subunit AFMDGAFA_03391 PF02033 Ribosome-binding factor A AFMDGAFA_03392 PF00009 Elongation factor Tu GTP binding domain AFMDGAFA_03392 PF11987 Translation-initiation factor 2 AFMDGAFA_03392 PF08364 Bacterial translation initiation factor IF-2 associated region AFMDGAFA_03392 PF04760 Translation initiation factor IF-2, N-terminal region AFMDGAFA_03393 PF13184 NusA-like KH domain AFMDGAFA_03393 PF08529 NusA N-terminal domain AFMDGAFA_03394 PF02576 RimP N-terminal domain AFMDGAFA_03394 PF17384 RimP C-terminal SH3 domain AFMDGAFA_03398 PF03840 Preprotein translocase SecG subunit AFMDGAFA_03399 PF00121 Triosephosphate isomerase AFMDGAFA_03400 PF00437 Type II/IV secretion system protein AFMDGAFA_03400 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AFMDGAFA_03401 PF00482 Type II secretion system (T2SS), protein F AFMDGAFA_03402 PF06750 Bacterial Peptidase A24 N-terminal domain AFMDGAFA_03402 PF01478 Type IV leader peptidase family AFMDGAFA_03403 PF01121 Dephospho-CoA kinase AFMDGAFA_03405 PF00588 SpoU rRNA Methylase family AFMDGAFA_03405 PF08032 RNA 2'-O ribose methyltransferase substrate binding AFMDGAFA_03406 PF06865 Pyrimidine/purine nucleoside phosphorylase AFMDGAFA_03408 PF02463 RecF/RecN/SMC N terminal domain AFMDGAFA_03409 PF02622 Uncharacterized ACR, COG1678 AFMDGAFA_03410 PF03652 Holliday junction resolvase AFMDGAFA_03411 PF13533 Biotin-lipoyl like AFMDGAFA_03416 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AFMDGAFA_03416 PF12833 Helix-turn-helix domain AFMDGAFA_03416 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AFMDGAFA_03416 PF02805 Metal binding domain of Ada AFMDGAFA_03417 PF01066 CDP-alcohol phosphatidyltransferase AFMDGAFA_03419 PF01541 GIY-YIG catalytic domain AFMDGAFA_03419 PF02151 UvrB/uvrC motif AFMDGAFA_03419 PF08459 UvrC RNAse H endonuclease domain AFMDGAFA_03422 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AFMDGAFA_03422 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AFMDGAFA_03422 PF00378 Enoyl-CoA hydratase/isomerase AFMDGAFA_03423 PF00108 Thiolase, N-terminal domain AFMDGAFA_03423 PF02803 Thiolase, C-terminal domain AFMDGAFA_03428 PF09278 MerR, DNA binding AFMDGAFA_03428 PF00376 MerR family regulatory protein AFMDGAFA_03430 PF01323 DSBA-like thioredoxin domain AFMDGAFA_03433 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFMDGAFA_03433 PF00183 Hsp90 protein AFMDGAFA_03436 PF13726 Na+-H+ antiporter family AFMDGAFA_03436 PF03553 Na+/H+ antiporter family AFMDGAFA_03437 PF00561 alpha/beta hydrolase fold AFMDGAFA_03441 PF00623 RNA polymerase Rpb1, domain 2 AFMDGAFA_03441 PF04983 RNA polymerase Rpb1, domain 3 AFMDGAFA_03441 PF05000 RNA polymerase Rpb1, domain 4 AFMDGAFA_03441 PF04997 RNA polymerase Rpb1, domain 1 AFMDGAFA_03441 PF04998 RNA polymerase Rpb1, domain 5 AFMDGAFA_03442 PF04560 RNA polymerase Rpb2, domain 7 AFMDGAFA_03442 PF00562 RNA polymerase Rpb2, domain 6 AFMDGAFA_03442 PF10385 RNA polymerase beta subunit external 1 domain AFMDGAFA_03442 PF04561 RNA polymerase Rpb2, domain 2 AFMDGAFA_03442 PF04563 RNA polymerase beta subunit AFMDGAFA_03442 PF04565 RNA polymerase Rpb2, domain 3 AFMDGAFA_03443 PF16320 Ribosomal protein L7/L12 dimerisation domain AFMDGAFA_03443 PF00542 Ribosomal protein L7/L12 C-terminal domain AFMDGAFA_03444 PF00466 Ribosomal protein L10 AFMDGAFA_03445 PF00687 Ribosomal protein L1p/L10e family AFMDGAFA_03446 PF00298 Ribosomal protein L11, RNA binding domain AFMDGAFA_03446 PF03946 Ribosomal protein L11, N-terminal domain AFMDGAFA_03447 PF00467 KOW motif AFMDGAFA_03447 PF02357 Transcription termination factor nusG AFMDGAFA_03448 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AFMDGAFA_03450 PF00009 Elongation factor Tu GTP binding domain AFMDGAFA_03450 PF03143 Elongation factor Tu C-terminal domain AFMDGAFA_03450 PF03144 Elongation factor Tu domain 2 AFMDGAFA_03455 PF04715 Anthranilate synthase component I, N terminal region AFMDGAFA_03455 PF00425 chorismate binding enzyme AFMDGAFA_03456 PF13419 Haloacid dehalogenase-like hydrolase AFMDGAFA_03457 PF00498 FHA domain AFMDGAFA_03457 PF12401 FhaA, N-terminal domain AFMDGAFA_03458 PF00263 Bacterial type II and III secretion system protein AFMDGAFA_03458 PF03958 Bacterial type II/III secretion system short domain AFMDGAFA_03461 PF00816 H-NS histone family AFMDGAFA_03466 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AFMDGAFA_03466 PF03900 Porphobilinogen deaminase, C-terminal domain AFMDGAFA_03467 PF04397 LytTr DNA-binding domain AFMDGAFA_03467 PF00072 Response regulator receiver domain AFMDGAFA_03468 PF07694 5TMR of 5TMR-LYT AFMDGAFA_03468 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFMDGAFA_03468 PF06580 Histidine kinase AFMDGAFA_03469 PF14698 Argininosuccinate lyase C-terminal AFMDGAFA_03469 PF00206 Lyase AFMDGAFA_03470 PF04362 Bacterial Fe(2+) trafficking AFMDGAFA_03471 PF01895 PhoU domain AFMDGAFA_03472 PF02321 Outer membrane efflux protein AFMDGAFA_03473 PF00892 EamA-like transporter family AFMDGAFA_03477 PF01964 Radical SAM ThiC family AFMDGAFA_03477 PF13667 ThiC-associated domain AFMDGAFA_03478 PF00293 NUDIX domain AFMDGAFA_03479 PF00149 Calcineurin-like phosphoesterase AFMDGAFA_03480 PF01258 Prokaryotic dksA/traR C4-type zinc finger AFMDGAFA_03481 PF00749 tRNA synthetases class I (E and Q), catalytic domain AFMDGAFA_03482 PF01098 Cell cycle protein AFMDGAFA_03483 PF02875 Mur ligase family, glutamate ligase domain AFMDGAFA_03483 PF08245 Mur ligase middle domain AFMDGAFA_03485 PF07664 Ferrous iron transport protein B C terminus AFMDGAFA_03485 PF07670 Nucleoside recognition AFMDGAFA_03485 PF02421 Ferrous iron transport protein B AFMDGAFA_03487 PF02899 Phage integrase, N-terminal SAM-like domain AFMDGAFA_03487 PF00589 Phage integrase family AFMDGAFA_03488 PF10411 Disulfide bond isomerase protein N-terminus AFMDGAFA_03488 PF13098 Thioredoxin-like domain AFMDGAFA_03489 PF01842 ACT domain AFMDGAFA_03489 PF00742 Homoserine dehydrogenase AFMDGAFA_03489 PF03447 Homoserine dehydrogenase, NAD binding domain AFMDGAFA_03490 PF00291 Pyridoxal-phosphate dependent enzyme AFMDGAFA_03491 PF00768 D-alanyl-D-alanine carboxypeptidase AFMDGAFA_03492 PF00196 Bacterial regulatory proteins, luxR family AFMDGAFA_03492 PF00072 Response regulator receiver domain AFMDGAFA_03493 PF00512 His Kinase A (phospho-acceptor) domain AFMDGAFA_03493 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFMDGAFA_03494 PF00158 Sigma-54 interaction domain AFMDGAFA_03494 PF00072 Response regulator receiver domain AFMDGAFA_03494 PF02954 Bacterial regulatory protein, Fis family AFMDGAFA_03495 PF03572 Peptidase family S41 AFMDGAFA_03495 PF00595 PDZ domain AFMDGAFA_03496 PF01676 Metalloenzyme superfamily AFMDGAFA_03496 PF06415 BPG-independent PGAM N-terminus (iPGM_N) AFMDGAFA_03497 PF03739 Lipopolysaccharide export system permease LptF/LptG AFMDGAFA_03499 PF02789 Cytosol aminopeptidase family, N-terminal domain AFMDGAFA_03499 PF00883 Cytosol aminopeptidase family, catalytic domain AFMDGAFA_03503 PF00677 Lumazine binding domain AFMDGAFA_03505 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AFMDGAFA_03505 PF01872 RibD C-terminal domain AFMDGAFA_03506 PF03477 ATP cone domain AFMDGAFA_03507 PF00909 Ammonium Transporter Family AFMDGAFA_03508 PF00543 Nitrogen regulatory protein P-II AFMDGAFA_03510 PF13335 Magnesium chelatase, subunit ChlI C-terminal AFMDGAFA_03510 PF01078 Magnesium chelatase, subunit ChlI AFMDGAFA_03512 PF01740 STAS domain AFMDGAFA_03512 PF00916 Sulfate permease family AFMDGAFA_03513 PF00582 Universal stress protein family AFMDGAFA_03519 PF00665 Integrase core domain AFMDGAFA_03522 PF01078 Magnesium chelatase, subunit ChlI AFMDGAFA_03522 PF13335 Magnesium chelatase, subunit ChlI C-terminal AFMDGAFA_03523 PF00155 Aminotransferase class I and II AFMDGAFA_03525 PF00701 Dihydrodipicolinate synthetase family AFMDGAFA_03528 PF03573 outer membrane porin, OprD family AFMDGAFA_03529 PF00719 Inorganic pyrophosphatase AFMDGAFA_03532 PF00501 AMP-binding enzyme AFMDGAFA_03532 PF13193 AMP-binding enzyme C-terminal domain AFMDGAFA_03533 PF03989 DNA gyrase C-terminal domain, beta-propeller AFMDGAFA_03533 PF00521 DNA gyrase/topoisomerase IV, subunit A AFMDGAFA_03534 PF07690 Major Facilitator Superfamily AFMDGAFA_03535 PF03458 Glycine transporter AFMDGAFA_03536 PF02810 SEC-C motif AFMDGAFA_03537 PF03471 Transporter associated domain AFMDGAFA_03537 PF03741 Integral membrane protein TerC family AFMDGAFA_03538 PF03641 Possible lysine decarboxylase AFMDGAFA_03539 PF07690 Major Facilitator Superfamily AFMDGAFA_03541 PF11798 IMS family HHH motif AFMDGAFA_03541 PF00817 impB/mucB/samB family AFMDGAFA_03541 PF11799 impB/mucB/samB family C-terminal domain AFMDGAFA_03544 PF04055 Radical SAM superfamily AFMDGAFA_03544 PF11842 Domain of unknown function (DUF3362) AFMDGAFA_03544 PF08497 Radical SAM N-terminal AFMDGAFA_03548 PF03358 NADPH-dependent FMN reductase AFMDGAFA_03550 PF00291 Pyridoxal-phosphate dependent enzyme AFMDGAFA_03557 PF00440 Bacterial regulatory proteins, tetR family AFMDGAFA_03562 PF01327 Polypeptide deformylase AFMDGAFA_03564 PF02481 DNA recombination-mediator protein A AFMDGAFA_03564 PF17782 DprA winged helix domain AFMDGAFA_03565 PF01300 Telomere recombination AFMDGAFA_03566 PF00892 EamA-like transporter family AFMDGAFA_03567 PF00440 Bacterial regulatory proteins, tetR family AFMDGAFA_03568 PF07690 Major Facilitator Superfamily AFMDGAFA_03570 PF00255 Glutathione peroxidase AFMDGAFA_03572 PF11008 Protein of unknown function (DUF2846) AFMDGAFA_03573 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AFMDGAFA_03574 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AFMDGAFA_03574 PF02874 ATP synthase alpha/beta family, beta-barrel domain AFMDGAFA_03575 PF00231 ATP synthase AFMDGAFA_03576 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AFMDGAFA_03576 PF00306 ATP synthase alpha/beta chain, C terminal domain AFMDGAFA_03576 PF02874 ATP synthase alpha/beta family, beta-barrel domain AFMDGAFA_03577 PF00213 ATP synthase delta (OSCP) subunit AFMDGAFA_03578 PF00430 ATP synthase B/B' CF(0) AFMDGAFA_03579 PF00137 ATP synthase subunit C AFMDGAFA_03580 PF00119 ATP synthase A chain AFMDGAFA_03584 PF00005 ABC transporter AFMDGAFA_03585 PF00950 ABC 3 transport family AFMDGAFA_03586 PF01810 LysE type translocator AFMDGAFA_03587 PF04261 Dyp-type peroxidase family AFMDGAFA_03588 PF00390 Malic enzyme, N-terminal domain AFMDGAFA_03588 PF03949 Malic enzyme, NAD binding domain AFMDGAFA_03589 PF03485 Arginyl tRNA synthetase N terminal domain AFMDGAFA_03589 PF05746 DALR anticodon binding domain AFMDGAFA_03589 PF00750 tRNA synthetases class I (R) AFMDGAFA_03593 PF02678 Pirin AFMDGAFA_03593 PF05726 Pirin C-terminal cupin domain AFMDGAFA_03595 PF03551 Transcriptional regulator PadR-like family AFMDGAFA_03596 PF13427 Domain of unknown function (DUF4111) AFMDGAFA_03596 PF01909 Nucleotidyltransferase domain AFMDGAFA_03597 PF00117 Glutamine amidotransferase class-I AFMDGAFA_03597 PF00958 GMP synthase C terminal domain AFMDGAFA_03597 PF02540 NAD synthase AFMDGAFA_03598 PF04286 Protein of unknown function (DUF445) AFMDGAFA_03599 PF07681 DoxX AFMDGAFA_03600 PF09335 SNARE associated Golgi protein AFMDGAFA_03603 PF13614 AAA domain AFMDGAFA_03605 PF01722 BolA-like protein AFMDGAFA_03608 PF01648 4'-phosphopantetheinyl transferase superfamily AFMDGAFA_03609 PF16363 GDP-mannose 4,6 dehydratase AFMDGAFA_03612 PF00501 AMP-binding enzyme AFMDGAFA_03612 PF00668 Condensation domain AFMDGAFA_03612 PF13193 AMP-binding enzyme C-terminal domain AFMDGAFA_03612 PF00975 Thioesterase domain AFMDGAFA_03612 PF00550 Phosphopantetheine attachment site AFMDGAFA_03613 PF02801 Beta-ketoacyl synthase, C-terminal domain AFMDGAFA_03613 PF08659 KR domain AFMDGAFA_03613 PF00550 Phosphopantetheine attachment site AFMDGAFA_03613 PF14765 Polyketide synthase dehydratase AFMDGAFA_03613 PF00109 Beta-ketoacyl synthase, N-terminal domain AFMDGAFA_03613 PF16197 Ketoacyl-synthetase C-terminal extension AFMDGAFA_03613 PF00501 AMP-binding enzyme AFMDGAFA_03613 PF13193 AMP-binding enzyme C-terminal domain AFMDGAFA_03613 PF00668 Condensation domain AFMDGAFA_03614 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFMDGAFA_03614 PF02770 Acyl-CoA dehydrogenase, middle domain AFMDGAFA_03614 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFMDGAFA_03615 PF00501 AMP-binding enzyme AFMDGAFA_03616 PF00196 Bacterial regulatory proteins, luxR family AFMDGAFA_03616 PF03472 Autoinducer binding domain AFMDGAFA_03618 PF00765 Autoinducer synthase AFMDGAFA_03619 PF07690 Major Facilitator Superfamily AFMDGAFA_03619 PF00083 Sugar (and other) transporter AFMDGAFA_03620 PF00378 Enoyl-CoA hydratase/isomerase AFMDGAFA_03621 PF00378 Enoyl-CoA hydratase/isomerase AFMDGAFA_03622 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFMDGAFA_03622 PF02770 Acyl-CoA dehydrogenase, middle domain AFMDGAFA_03622 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFMDGAFA_03623 PF13193 AMP-binding enzyme C-terminal domain AFMDGAFA_03623 PF00501 AMP-binding enzyme AFMDGAFA_03624 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AFMDGAFA_03624 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AFMDGAFA_03625 PF00171 Aldehyde dehydrogenase family AFMDGAFA_03627 PF00324 Amino acid permease AFMDGAFA_03628 PF00324 Amino acid permease AFMDGAFA_03629 PF01042 Endoribonuclease L-PSP AFMDGAFA_03630 PF00842 Alanine racemase, C-terminal domain AFMDGAFA_03630 PF01168 Alanine racemase, N-terminal domain AFMDGAFA_03631 PF01266 FAD dependent oxidoreductase AFMDGAFA_03632 PF01037 Lrp/AsnC ligand binding domain AFMDGAFA_03634 PF00593 TonB dependent receptor AFMDGAFA_03634 PF07715 TonB-dependent Receptor Plug Domain AFMDGAFA_03637 PF00849 RNA pseudouridylate synthase AFMDGAFA_03645 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) AFMDGAFA_03645 PF04717 Type VI secretion system/phage-baseplate injector OB domain AFMDGAFA_03645 PF13296 Putative type VI secretion system Rhs element Vgr AFMDGAFA_03647 PF00109 Beta-ketoacyl synthase, N-terminal domain AFMDGAFA_03647 PF02801 Beta-ketoacyl synthase, C-terminal domain AFMDGAFA_03652 PF00694 Aconitase C-terminal domain AFMDGAFA_03652 PF00330 Aconitase family (aconitate hydratase) AFMDGAFA_03653 PF00285 Citrate synthase, C-terminal domain AFMDGAFA_03655 PF07729 FCD domain AFMDGAFA_03655 PF00392 Bacterial regulatory proteins, gntR family AFMDGAFA_03656 PF00155 Aminotransferase class I and II AFMDGAFA_03657 PF09330 D-lactate dehydrogenase, membrane binding AFMDGAFA_03657 PF01565 FAD binding domain AFMDGAFA_03658 PF01070 FMN-dependent dehydrogenase AFMDGAFA_03659 PF00392 Bacterial regulatory proteins, gntR family AFMDGAFA_03659 PF07729 FCD domain AFMDGAFA_03660 PF02652 L-lactate permease AFMDGAFA_03661 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AFMDGAFA_03661 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AFMDGAFA_03661 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AFMDGAFA_03661 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AFMDGAFA_03662 PF16363 GDP-mannose 4,6 dehydratase AFMDGAFA_03663 PF00342 Phosphoglucose isomerase AFMDGAFA_03664 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AFMDGAFA_03664 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AFMDGAFA_03664 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AFMDGAFA_03665 PF00483 Nucleotidyl transferase AFMDGAFA_03666 PF02397 Bacterial sugar transferase AFMDGAFA_03667 PF00535 Glycosyl transferase family 2 AFMDGAFA_03668 PF00534 Glycosyl transferases group 1 AFMDGAFA_03671 PF13439 Glycosyltransferase Family 4 AFMDGAFA_03671 PF00534 Glycosyl transferases group 1 AFMDGAFA_03672 PF00132 Bacterial transferase hexapeptide (six repeats) AFMDGAFA_03672 PF14602 Hexapeptide repeat of succinyl-transferase AFMDGAFA_03672 PF12464 Maltose acetyltransferase AFMDGAFA_03674 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AFMDGAFA_03675 PF14602 Hexapeptide repeat of succinyl-transferase AFMDGAFA_03675 PF00132 Bacterial transferase hexapeptide (six repeats) AFMDGAFA_03676 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFMDGAFA_03676 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AFMDGAFA_03677 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AFMDGAFA_03677 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AFMDGAFA_03677 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AFMDGAFA_03678 PF02563 Polysaccharide biosynthesis/export protein AFMDGAFA_03678 PF10531 SLBB domain AFMDGAFA_03678 PF18412 Outer-membrane lipoprotein Wza C-terminal domain AFMDGAFA_03679 PF01451 Low molecular weight phosphotyrosine protein phosphatase AFMDGAFA_03680 PF02706 Chain length determinant protein AFMDGAFA_03680 PF13807 G-rich domain on putative tyrosine kinase AFMDGAFA_03680 PF13614 AAA domain AFMDGAFA_03681 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AFMDGAFA_03681 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AFMDGAFA_03682 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AFMDGAFA_03682 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AFMDGAFA_03683 PF03023 Lipid II flippase MurJ AFMDGAFA_03684 PF01510 N-acetylmuramoyl-L-alanine amidase AFMDGAFA_03685 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AFMDGAFA_03685 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AFMDGAFA_03687 PF04185 Phosphoesterase family AFMDGAFA_03687 PF05506 Bacterial phospholipase C, C-terminal domain AFMDGAFA_03688 PF01138 3' exoribonuclease family, domain 1 AFMDGAFA_03688 PF03725 3' exoribonuclease family, domain 2 AFMDGAFA_03689 PF00487 Fatty acid desaturase AFMDGAFA_03690 PF00175 Oxidoreductase NAD-binding domain AFMDGAFA_03691 PF00440 Bacterial regulatory proteins, tetR family AFMDGAFA_03692 PF08360 QacR-like protein, C-terminal region AFMDGAFA_03692 PF00440 Bacterial regulatory proteins, tetR family AFMDGAFA_03693 PF01323 DSBA-like thioredoxin domain AFMDGAFA_03695 PF13419 Haloacid dehalogenase-like hydrolase AFMDGAFA_03696 PF00106 short chain dehydrogenase AFMDGAFA_03699 PF00583 Acetyltransferase (GNAT) family AFMDGAFA_03699 PF00696 Amino acid kinase family AFMDGAFA_03700 PF09084 NMT1/THI5 like AFMDGAFA_03701 PF09084 NMT1/THI5 like AFMDGAFA_03702 PF00296 Luciferase-like monooxygenase AFMDGAFA_03703 PF00528 Binding-protein-dependent transport system inner membrane component AFMDGAFA_03704 PF00005 ABC transporter AFMDGAFA_03705 PF08362 YcdC-like protein, C-terminal region AFMDGAFA_03705 PF00440 Bacterial regulatory proteins, tetR family AFMDGAFA_03706 PF01048 Phosphorylase superfamily AFMDGAFA_03707 PF03595 Voltage-dependent anion channel AFMDGAFA_03708 PF06574 FAD synthetase AFMDGAFA_03708 PF01687 Riboflavin kinase AFMDGAFA_03709 PF00133 tRNA synthetases class I (I, L, M and V) AFMDGAFA_03709 PF08264 Anticodon-binding domain of tRNA ligase AFMDGAFA_03709 PF06827 Zinc finger found in FPG and IleRS AFMDGAFA_03710 PF01252 Signal peptidase (SPase) II AFMDGAFA_03711 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AFMDGAFA_03718 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AFMDGAFA_03719 PF07859 alpha/beta hydrolase fold AFMDGAFA_03723 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFMDGAFA_03723 PF03466 LysR substrate binding domain AFMDGAFA_03724 PF01025 GrpE AFMDGAFA_03725 PF00012 Hsp70 protein AFMDGAFA_03729 PF13406 Transglycosylase SLT domain AFMDGAFA_03730 PF02222 ATP-grasp domain AFMDGAFA_03730 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AFMDGAFA_03731 PF00731 AIR carboxylase AFMDGAFA_03733 PF01225 Mur ligase family, catalytic domain AFMDGAFA_03733 PF02875 Mur ligase family, glutamate ligase domain AFMDGAFA_03733 PF08245 Mur ligase middle domain AFMDGAFA_03735 PF01569 PAP2 superfamily AFMDGAFA_03736 PF03741 Integral membrane protein TerC family AFMDGAFA_03738 PF03738 Glutathionylspermidine synthase preATP-grasp AFMDGAFA_03739 PF00355 Rieske [2Fe-2S] domain AFMDGAFA_03739 PF19112 Vanillate O-demethylase oxygenase C-terminal domain AFMDGAFA_03740 PF01979 Amidohydrolase family AFMDGAFA_03741 PF00156 Phosphoribosyl transferase domain AFMDGAFA_03743 PF13098 Thioredoxin-like domain AFMDGAFA_03743 PF10411 Disulfide bond isomerase protein N-terminus AFMDGAFA_03744 PF16916 Dimerisation domain of Zinc Transporter AFMDGAFA_03744 PF01545 Cation efflux family AFMDGAFA_03745 PF02583 Metal-sensitive transcriptional repressor AFMDGAFA_03746 PF10396 GTP-binding protein TrmE N-terminus AFMDGAFA_03746 PF12631 MnmE helical domain AFMDGAFA_03746 PF01926 50S ribosome-binding GTPase AFMDGAFA_03747 PF14849 YidC periplasmic domain AFMDGAFA_03747 PF02096 60Kd inner membrane protein AFMDGAFA_03748 PF01809 Putative membrane protein insertion efficiency factor AFMDGAFA_03749 PF00825 Ribonuclease P AFMDGAFA_03750 PF00468 Ribosomal protein L34 AFMDGAFA_03762 PF01758 Sodium Bile acid symporter family AFMDGAFA_03764 PF03358 NADPH-dependent FMN reductase AFMDGAFA_03765 PF02796 Helix-turn-helix domain of resolvase AFMDGAFA_03765 PF00239 Resolvase, N terminal domain AFMDGAFA_03768 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AFMDGAFA_03768 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AFMDGAFA_03768 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AFMDGAFA_03768 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AFMDGAFA_03769 PF00809 Pterin binding enzyme AFMDGAFA_03773 PF00665 Integrase core domain AFMDGAFA_03778 PF00589 Phage integrase family AFMDGAFA_03778 PF02899 Phage integrase, N-terminal SAM-like domain AFMDGAFA_03784 PF01740 STAS domain AFMDGAFA_03784 PF00916 Sulfate permease family AFMDGAFA_03785 PF00582 Universal stress protein family AFMDGAFA_03791 PF00665 Integrase core domain AFMDGAFA_03796 PF01435 Peptidase family M48 AFMDGAFA_03809 PF13737 Transposase DDE domain AFMDGAFA_03834 PF01551 Peptidase family M23 AFMDGAFA_03834 PF04225 Opacity-associated protein A LysM-like domain AFMDGAFA_03834 PF19425 Csd3 second domain AFMDGAFA_03838 PF00717 Peptidase S24-like AFMDGAFA_03839 PF11799 impB/mucB/samB family C-terminal domain AFMDGAFA_03839 PF11798 IMS family HHH motif AFMDGAFA_03839 PF13438 Domain of unknown function (DUF4113) AFMDGAFA_03839 PF00817 impB/mucB/samB family AFMDGAFA_03841 PF17762 HTH domain found in ParB protein AFMDGAFA_03841 PF02195 ParB/Sulfiredoxin domain AFMDGAFA_03842 PF13614 AAA domain AFMDGAFA_03852 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AFMDGAFA_03852 PF00437 Type II/IV secretion system protein AFMDGAFA_03872 PF12696 TraM recognition site of TraD and TraG AFMDGAFA_03872 PF10412 Type IV secretion-system coupling protein DNA-binding domain AFMDGAFA_03878 PF00565 Staphylococcal nuclease homologue AFMDGAFA_03894 PF01131 DNA topoisomerase AFMDGAFA_03894 PF01751 Toprim domain AFMDGAFA_03894 PF01396 Topoisomerase DNA binding C4 zinc finger AFMDGAFA_03899 PF07670 Nucleoside recognition AFMDGAFA_03899 PF02421 Ferrous iron transport protein B AFMDGAFA_03899 PF07664 Ferrous iron transport protein B C terminus AFMDGAFA_03903 PF01527 Transposase AFMDGAFA_03905 PF13276 HTH-like domain AFMDGAFA_03905 PF00665 Integrase core domain AFMDGAFA_03905 PF13333 Integrase core domain AFMDGAFA_03915 PF04221 RelB antitoxin AFMDGAFA_03919 PF05973 Phage derived protein Gp49-like (DUF891) AFMDGAFA_03924 PF00239 Resolvase, N terminal domain AFMDGAFA_03924 PF02796 Helix-turn-helix domain of resolvase AFMDGAFA_03928 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AFMDGAFA_03928 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AFMDGAFA_03929 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFMDGAFA_03929 PF03466 LysR substrate binding domain AFMDGAFA_03933 PF01051 Initiator Replication protein AFMDGAFA_03938 PF07715 TonB-dependent Receptor Plug Domain AFMDGAFA_03938 PF00593 TonB dependent receptor