locus-tag class description Aa23R_1001 PF14883 Hypothetical glycosyl hydrolase family 13 Aa23R_1001 PF01522 Polysaccharide deacetylase Aa23R_1011 PF05175 Methyltransferase small domain Aa23R_1020 PF07119 Protein of unknown function (DUF1375) Aa23R_1022 PF01612 3'-5' exonuclease Aa23R_1022 PF00476 DNA polymerase family A Aa23R_1022 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain Aa23R_1022 PF01367 5'-3' exonuclease, C-terminal SAM fold Aa23R_1040 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term Aa23R_1040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Aa23R_1040 PF07730 Histidine kinase Aa23R_1040 PF00672 HAMP domain Aa23R_1043 PF04545 Sigma-70, region 4 Aa23R_1043 PF04542 Sigma-70 region 2 Aa23R_1043 PF00140 Sigma-70 factor, region 1.2 Aa23R_1048 PF00177 Ribosomal protein S7p/S5e Aa23R_1049 PF00164 Ribosomal protein S12/S23 Aa23R_1051 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Aa23R_1051 PF03466 LysR substrate binding domain Aa23R_1055 PF01396 Topoisomerase DNA binding C4 zinc finger Aa23R_1062 PF07715 TonB-dependent Receptor Plug Domain Aa23R_1062 PF00593 TonB dependent receptor Aa23R_1065 PF00696 Amino acid kinase family Aa23R_1080 PF03600 Citrate transporter Aa23R_1080 PF02080 TrkA-C domain Aa23R_1087 PF01042 Endoribonuclease L-PSP Aa23R_1112 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase Aa23R_1112 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Aa23R_1124 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded Aa23R_1131 PF03899 ATP synthase I chain Aa23R_1132 PF00119 ATP synthase A chain Aa23R_1146 PF01420 Type I restriction modification DNA specificity domain Aa23R_116 PF03701 Uncharacterised protein family (UPF0181) Aa23R_1179 PF13419 Haloacid dehalogenase-like hydrolase Aa23R_118 PF04287 tRNA pseudouridine synthase C Aa23R_1184 PF01142 tRNA pseudouridine synthase D (TruD) Aa23R_1185 PF01975 Survival protein SurE Aa23R_1188 PF01551 Peptidase family M23 Aa23R_1188 PF01476 LysM domain Aa23R_120 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term Aa23R_120 PF14489 QueF-like protein Aa23R_121 PF02954 Bacterial regulatory protein, Fis family Aa23R_121 PF00072 Response regulator receiver domain Aa23R_121 PF14532 Sigma-54 interaction domain Aa23R_1213 PF01245 Ribosomal protein L19 Aa23R_1221 PF05164 Cell division protein ZapA Aa23R_1224 PF00849 RNA pseudouridylate synthase Aa23R_1224 PF01479 S4 domain Aa23R_1233 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Aa23R_1245 PF00471 Ribosomal protein L33 Aa23R_1247 PF04002 RadC-like JAB domain Aa23R_1270 PF05258 Dna[CI] antecedent, DciA Aa23R_1294 PF00448 SRP54-type protein, GTPase domain Aa23R_1294 PF02881 SRP54-type protein, helical bundle domain Aa23R_1294 PF02978 Signal peptide binding domain Aa23R_13 PF13533 Biotin-lipoyl like Aa23R_131 PF03553 Na+/H+ antiporter family Aa23R_1319 PF05746 DALR anticodon binding domain Aa23R_1319 PF02092 Glycyl-tRNA synthetase beta subunit Aa23R_1321 PF00902 Sec-independent protein translocase protein (TatC) Aa23R_1327 PF00293 NUDIX domain Aa23R_1333 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain Aa23R_1333 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain Aa23R_1334 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase Aa23R_1342 PF02801 Beta-ketoacyl synthase, C-terminal domain Aa23R_1342 PF00109 Beta-ketoacyl synthase, N-terminal domain Aa23R_1366 PF02769 AIR synthase related protein, C-terminal domain Aa23R_1366 PF00586 AIR synthase related protein, N-terminal domain Aa23R_1377 PF06418 CTP synthase N-terminus Aa23R_1377 PF00117 Glutamine amidotransferase class-I Aa23R_1396 PF01797 Transposase IS200 like Aa23R_1407 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) Aa23R_1410 PF00665 Integrase core domain Aa23R_1410 PF13276 HTH-like domain Aa23R_1426 PF00318 Ribosomal protein S2 Aa23R_1435 PF00005 ABC transporter Aa23R_1437 PF01547 Bacterial extracellular solute-binding protein Aa23R_1439 PF02390 Putative methyltransferase Aa23R_144 PF08007 Cupin superfamily protein Aa23R_1447 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) Aa23R_1447 PF11973 NQRA C-terminal domain Aa23R_1449 PF04205 FMN-binding domain Aa23R_146 PF03668 P-loop ATPase protein family Aa23R_1461 PF04452 RNA methyltransferase Aa23R_147 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Aa23R_1477 PF02580 D-Tyr-tRNA(Tyr) deacylase Aa23R_1490 PF00437 Type II/IV secretion system protein Aa23R_1491 PF02534 Type IV secretory system Conjugative DNA transfer Aa23R_1496 PF13614 AAA domain Aa23R_1510 PF01293 Phosphoenolpyruvate carboxykinase Aa23R_1512 PF04357 TamB, inner membrane protein subunit of TAM complex Aa23R_1539 PF01491 Frataxin-like domain Aa23R_154 PF05494 MlaC protein Aa23R_1541 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Aa23R_1541 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Aa23R_1544 PF04453 LPS transport system D Aa23R_1544 PF03968 OstA-like protein Aa23R_1588 PF00528 Binding-protein-dependent transport system inner membrane component Aa23R_1594 PF04999 Cell division protein FtsL Aa23R_1604 PF03799 Cell division protein FtsQ Aa23R_1604 PF08478 POTRA domain, FtsQ-type Aa23R_1628 PF00152 tRNA synthetases class II (D, K and N) Aa23R_1641 PF01371 Trp repressor protein Aa23R_1642 PF01464 Transglycosylase SLT domain Aa23R_1642 PF14718 Soluble lytic murein transglycosylase L domain Aa23R_1649 PF02463 RecF/RecN/SMC N terminal domain Aa23R_1650 PF01513 ATP-NAD kinase Aa23R_1659 PF13407 Periplasmic binding protein domain Aa23R_1660 PF00356 Bacterial regulatory proteins, lacI family Aa23R_1666 PF00939 Sodium:sulfate symporter transmembrane region Aa23R_1705 PF08003 Protein of unknown function (DUF1698) Aa23R_171 PF00120 Glutamine synthetase, catalytic domain Aa23R_171 PF03951 Glutamine synthetase, beta-Grasp domain Aa23R_1712 PF03498 Cytolethal distending toxin A/C domain Aa23R_1713 PF03372 Endonuclease/Exonuclease/phosphatase family Aa23R_1719 PF00589 Phage integrase family Aa23R_1719 PF02899 Phage integrase, N-terminal SAM-like domain Aa23R_1782 PF00772 DnaB-like helicase N terminal domain Aa23R_1782 PF03796 DnaB-like helicase C terminal domain Aa23R_1790 PF00012 Hsp70 protein Aa23R_18 PF00005 ABC transporter Aa23R_1804 PF00809 Pterin binding enzyme Aa23R_1817 PF00005 ABC transporter Aa23R_1817 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Aa23R_1837 PF03193 RsgA GTPase Aa23R_1842 PF04304 Protein of unknown function (DUF454) Aa23R_1856 PF00342 Phosphoglucose isomerase Aa23R_1858 PF01029 NusB family Aa23R_1860 PF04608 Phosphatidylglycerophosphatase A Aa23R_1885 PF01985 CRS1 / YhbY (CRM) domain Aa23R_1893 PF00528 Binding-protein-dependent transport system inner membrane component Aa23R_1896 PF01523 Putative modulator of DNA gyrase Aa23R_1897 PF00207 Alpha-2-macroglobulin family Aa23R_1897 PF07703 Alpha-2-macroglobulin bait region domain Aa23R_1897 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain Aa23R_1897 PF11974 Bacterial alpha-2-macroglobulin MG3 domain Aa23R_1897 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain Aa23R_1897 PF17962 Bacterial macroglobulin domain 6 Aa23R_1897 PF01835 MG2 domain Aa23R_19 PF01497 Periplasmic binding protein Aa23R_1902 PF03611 PTS system sugar-specific permease component Aa23R_1906 PF00596 Class II Aldolase and Adducin N-terminal domain Aa23R_1907 PF03222 Tryptophan/tyrosine permease family Aa23R_1909 PF02837 Glycosyl hydrolases family 2, sugar binding domain Aa23R_1909 PF02929 Beta galactosidase small chain Aa23R_1909 PF16353 Domain of unknown function(DUF4981) Aa23R_1909 PF00703 Glycosyl hydrolases family 2 Aa23R_1909 PF02836 Glycosyl hydrolases family 2, TIM barrel domain Aa23R_1912 PF18030 RimK PreATP-grasp domain Aa23R_1912 PF08443 RimK-like ATP-grasp domain Aa23R_1954 PF08501 Shikimate dehydrogenase substrate binding domain Aa23R_1965 PF13180 PDZ domain Aa23R_1967 PF03477 ATP cone domain Aa23R_1978 PF03116 NQR2, RnfD, RnfE family Aa23R_199 PF01081 KDPG and KHG aldolase Aa23R_2006 PF08335 GlnD PII-uridylyltransferase Aa23R_2006 PF03710 Glutamate-ammonia ligase adenylyltransferase Aa23R_2009 PF09704 CRISPR-associated protein (Cas_Cas5) Aa23R_201 PF00106 short chain dehydrogenase Aa23R_2024 PF01238 Phosphomannose isomerase type I Aa23R_203 PF03480 Bacterial extracellular solute-binding protein, family 7 Aa23R_2031 PF05191 Adenylate kinase, active site lid Aa23R_206 PF01055 Glycosyl hydrolases family 31 Aa23R_206 PF13802 Galactose mutarotase-like Aa23R_206 PF17137 Domain of unknown function (DUF5110) Aa23R_206 PF16338 Domain of unknown function (DUF4968) Aa23R_2060 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ Aa23R_2061 PF04221 RelB antitoxin Aa23R_2067 PF01555 DNA methylase Aa23R_2067 PF18273 Type III R-M EcoP15I C-terminal domain Aa23R_2073 PF01479 S4 domain Aa23R_2073 PF00579 tRNA synthetases class I (W and Y) Aa23R_208 PF03786 D-mannonate dehydratase (UxuA) Aa23R_2103 PF00196 Bacterial regulatory proteins, luxR family Aa23R_2103 PF17874 MalT-like TPR region Aa23R_2104 PF09313 Domain of unknown function (DUF1971) Aa23R_2104 PF03848 Tellurite resistance protein TehB Aa23R_211 PF00916 Sulfate permease family Aa23R_211 PF01740 STAS domain Aa23R_2115 PF03466 LysR substrate binding domain Aa23R_2115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Aa23R_212 PF02190 ATP-dependent protease La (LON) substrate-binding domain Aa23R_212 PF05362 Lon protease (S16) C-terminal proteolytic domain Aa23R_212 PF00004 ATPase family associated with various cellular activities (AAA) Aa23R_2151 PF01791 DeoC/LacD family aldolase Aa23R_2153 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Aa23R_2154 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Aa23R_2195 PF16330 MukB hinge domain Aa23R_2195 PF04310 MukB N-terminal Aa23R_22 PF07715 TonB-dependent Receptor Plug Domain Aa23R_22 PF00593 TonB dependent receptor Aa23R_2210 PF03958 Bacterial type II/III secretion system short domain Aa23R_2210 PF00263 Bacterial type II and III secretion system protein Aa23R_231 PF00202 Aminotransferase class-III Aa23R_258 PF00762 Ferrochelatase Aa23R_265 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase Aa23R_269 PF02378 Phosphotransferase system, EIIC Aa23R_269 PF00367 phosphotransferase system, EIIB Aa23R_269 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 Aa23R_273 PF06226 Protein of unknown function (DUF1007) Aa23R_282 PF14256 YwiC-like protein Aa23R_301 PF04247 Invasion gene expression up-regulator, SirB Aa23R_307 PF00575 S1 RNA binding domain Aa23R_311 PF00675 Insulinase (Peptidase family M16) Aa23R_311 PF05193 Peptidase M16 inactive domain Aa23R_339 PF12848 ABC transporter Aa23R_339 PF16326 ABC transporter C-terminal domain Aa23R_339 PF00005 ABC transporter Aa23R_34 PF03484 tRNA synthetase B5 domain Aa23R_34 PF01588 Putative tRNA binding domain Aa23R_34 PF03147 Ferredoxin-fold anticodon binding domain Aa23R_34 PF03483 B3/4 domain Aa23R_34 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain Aa23R_353 PF03625 Domain of unknown function DUF302 Aa23R_353 PF02537 CrcB-like protein, Camphor Resistance (CrcB) Aa23R_371 PF07273 Protein of unknown function (DUF1439) Aa23R_374 PF00925 GTP cyclohydrolase II Aa23R_376 PF16363 GDP-mannose 4,6 dehydratase Aa23R_378 PF05117 Family of unknown function (DUF695) Aa23R_378 PF06877 Regulator of ribonuclease activity B Aa23R_40 PF00425 chorismate binding enzyme Aa23R_40 PF04715 Anthranilate synthase component I, N terminal region Aa23R_413 PF01568 Molydopterin dinucleotide binding domain Aa23R_413 PF00384 Molybdopterin oxidoreductase Aa23R_413 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Aa23R_422 PF09077 Mu B transposition protein, C terminal Aa23R_422 PF13401 AAA domain Aa23R_424 PF09163 Formate dehydrogenase N, transmembrane Aa23R_424 PF13247 4Fe-4S dicluster domain Aa23R_430 PF00146 NADH dehydrogenase Aa23R_436 PF12838 4Fe-4S dicluster domain Aa23R_440 PF00384 Molybdopterin oxidoreductase Aa23R_440 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Aa23R_440 PF01568 Molydopterin dinucleotide binding domain Aa23R_449 PF03734 L,D-transpeptidase catalytic domain Aa23R_450 PF00595 PDZ domain Aa23R_450 PF11818 C-terminal domain of tail specific protease (DUF3340) Aa23R_450 PF03572 Peptidase family S41 Aa23R_450 PF17804 Tail specific protease N-terminal domain Aa23R_454 PF01546 Peptidase family M20/M25/M40 Aa23R_454 PF07687 Peptidase dimerisation domain Aa23R_457 PF00528 Binding-protein-dependent transport system inner membrane component Aa23R_464 PF13491 4TM region of DNA translocase FtsK/SpoIIIE Aa23R_464 PF09397 Ftsk gamma domain Aa23R_464 PF01580 FtsK/SpoIIIE family Aa23R_464 PF17854 FtsK alpha domain Aa23R_467 PF01928 CYTH domain Aa23R_480 PF00266 Aminotransferase class-V Aa23R_485 PF00155 Aminotransferase class I and II Aa23R_486 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Aa23R_496 PF01702 Queuine tRNA-ribosyltransferase Aa23R_506 PF13407 Periplasmic binding protein domain Aa23R_511 PF00459 Inositol monophosphatase family Aa23R_514 PF00294 pfkB family carbohydrate kinase Aa23R_52 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit Aa23R_520 PF01232 Mannitol dehydrogenase Rossmann domain Aa23R_520 PF08125 Mannitol dehydrogenase C-terminal domain Aa23R_543 PF02322 Cytochrome bd terminal oxidase subunit II Aa23R_568 PF02677 Epoxyqueuosine reductase QueH Aa23R_581 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Aa23R_581 PF00005 ABC transporter Aa23R_582 PF00005 ABC transporter Aa23R_582 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Aa23R_585 PF01197 Ribosomal protein L31 Aa23R_589 PF12111 Polyribonucleotide phosphorylase C terminal Aa23R_589 PF10150 Ribonuclease E/G family Aa23R_589 PF00575 S1 RNA binding domain Aa23R_596 PF04956 TrbC/VIRB2 family Aa23R_609 PF04461 Protein of unknown function (DUF520) Aa23R_610 PF18429 Domain of unknown function (DUF5609) Aa23R_630 PF01212 Beta-eliminating lyase Aa23R_640 PF01226 Formate/nitrite transporter Aa23R_655 PF07650 KH domain Aa23R_655 PF01926 50S ribosome-binding GTPase Aa23R_668 PF00665 Integrase core domain Aa23R_668 PF13276 HTH-like domain Aa23R_67 PF00106 short chain dehydrogenase Aa23R_68 PF00291 Pyridoxal-phosphate dependent enzyme Aa23R_689 PF03379 CcmB protein Aa23R_706 PF01476 LysM domain Aa23R_708 PF02152 Dihydroneopterin aldolase Aa23R_715 PF00425 chorismate binding enzyme Aa23R_716 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Aa23R_716 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Aa23R_716 PF16582 Middle domain of thiamine pyrophosphate Aa23R_724 PF04055 Radical SAM superfamily Aa23R_749 PF18389 TrmO C-terminal domain Aa23R_749 PF01980 tRNA-methyltransferase O Aa23R_752 PF00939 Sodium:sulfate symporter transmembrane region Aa23R_763 PF00013 KH domain Aa23R_763 PF00575 S1 RNA binding domain Aa23R_763 PF03725 3' exoribonuclease family, domain 2 Aa23R_763 PF01138 3' exoribonuclease family, domain 1 Aa23R_763 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain Aa23R_768 PF00482 Type II secretion system (T2SS), protein F Aa23R_793 PF00121 Triosephosphate isomerase Aa23R_798 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Aa23R_799 PF00303 Thymidylate synthase Aa23R_80 PF00005 ABC transporter Aa23R_809 PF00749 tRNA synthetases class I (E and Q), catalytic domain Aa23R_816 PF00501 AMP-binding enzyme Aa23R_82 PF04198 Putative sugar-binding domain Aa23R_839 PF07690 Major Facilitator Superfamily Aa23R_852 PF00202 Aminotransferase class-III Aa23R_898 PF00466 Ribosomal protein L10 Aa23R_922 PF00696 Amino acid kinase family Aa23R_97 PF02926 THUMP domain Aa23R_97 PF02568 Thiamine biosynthesis protein (ThiI) Aa23R_986 PF03222 Tryptophan/tyrosine permease family Aa23R_987 PF00719 Inorganic pyrophosphatase Aa23R_988 PF01435 Peptidase family M48 Aa23R_989 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase Aa23R_994 PF03609 PTS system sorbose-specific iic component Aa23S_10 PF00390 Malic enzyme, N-terminal domain Aa23S_10 PF03949 Malic enzyme, NAD binding domain Aa23S_100 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Aa23S_100 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Aa23S_1005 PF04223 Citrate lyase, alpha subunit (CitF) Aa23S_1006 PF03328 HpcH/HpaI aldolase/citrate lyase family Aa23S_1008 PF13673 Acetyltransferase (GNAT) domain Aa23S_1008 PF08218 Citrate lyase ligase C-terminal domain Aa23S_1019 PF04384 Iron-sulphur cluster assembly Aa23S_1025 PF00266 Aminotransferase class-V Aa23S_1034 PF00485 Phosphoribulokinase / Uridine kinase family Aa23S_1041 PF00709 Adenylosuccinate synthetase Aa23S_1044 PF10150 Ribonuclease E/G family Aa23S_1044 PF00575 S1 RNA binding domain Aa23S_1071 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase Aa23S_1071 PF10135 Rod binding protein Aa23S_1101 PF01751 Toprim domain Aa23S_1101 PF01131 DNA topoisomerase Aa23S_1109 PF00436 Single-strand binding protein family Aa23S_1120 PF00772 DnaB-like helicase N terminal domain Aa23S_1120 PF03796 DnaB-like helicase C terminal domain Aa23S_1135 PF00877 NlpC/P60 family Aa23S_1137 PF05209 Septum formation inhibitor MinC, N-terminal domain Aa23S_1137 PF03775 Septum formation inhibitor MinC, C-terminal domain Aa23S_1142 PF11798 IMS family HHH motif Aa23S_1142 PF00817 impB/mucB/samB family Aa23S_1149 PF00665 Integrase core domain Aa23S_115 PF17311 Family of unknown function (DUF5358) Aa23S_1151 PF03099 Biotin/lipoate A/B protein ligase family Aa23S_1151 PF02237 Biotin protein ligase C terminal domain Aa23S_1163 PF17209 Hfq protein Aa23S_1164 PF01715 IPP transferase Aa23S_1169 PF00535 Glycosyl transferase family 2 Aa23S_1183 PF00117 Glutamine amidotransferase class-I Aa23S_1188 PF12704 MacB-like periplasmic core domain Aa23S_1188 PF02687 FtsX-like permease family Aa23S_1204 PF00317 Ribonucleotide reductase, all-alpha domain Aa23S_1204 PF02867 Ribonucleotide reductase, barrel domain Aa23S_1204 PF03477 ATP cone domain Aa23S_1208 PF00528 Binding-protein-dependent transport system inner membrane component Aa23S_1210 PF00128 Alpha amylase, catalytic domain Aa23S_1211 PF00528 Binding-protein-dependent transport system inner membrane component Aa23S_1219 PF01227 GTP cyclohydrolase I Aa23S_1220 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family Aa23S_1223 PF05973 Phage derived protein Gp49-like (DUF891) Aa23S_1248 PF00881 Nitroreductase family Aa23S_1251 PF16036 Chalcone isomerase-like Aa23S_1252 PF00206 Lyase Aa23S_1252 PF10415 Fumarase C C-terminus Aa23S_1257 PF10458 Valyl tRNA synthetase tRNA binding arm Aa23S_1257 PF08264 Anticodon-binding domain of tRNA Aa23S_1257 PF00133 tRNA synthetases class I (I, L, M and V) Aa23S_1262 PF07804 HipA-like C-terminal domain Aa23S_1262 PF13657 HipA N-terminal domain Aa23S_1264 PF07690 Major Facilitator Superfamily Aa23S_1272 PF00152 tRNA synthetases class II (D, K and N) Aa23S_1272 PF01336 OB-fold nucleic acid binding domain Aa23S_1274 PF03462 PCRF domain Aa23S_1274 PF00472 RF-1 domain Aa23S_1284 PF02492 CobW/HypB/UreG, nucleotide-binding domain Aa23S_1295 PF00883 Cytosol aminopeptidase family, catalytic domain Aa23S_1295 PF02789 Cytosol aminopeptidase family, N-terminal domain Aa23S_13 PF08534 Redoxin Aa23S_1305 PF18125 RlmM ferredoxin-like domain Aa23S_1305 PF01728 FtsJ-like methyltransferase Aa23S_1306 PF03466 LysR substrate binding domain Aa23S_1306 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Aa23S_1309 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain Aa23S_1309 PF00056 lactate/malate dehydrogenase, NAD binding domain Aa23S_1317 PF02508 Rnf-Nqr subunit, membrane protein Aa23S_1323 PF00005 ABC transporter Aa23S_1352 PF01867 CRISPR associated protein Cas1 Aa23S_1353 PF09827 CRISPR associated protein Cas2 Aa23S_1363 PF07411 Domain of unknown function (DUF1508) Aa23S_1364 PF02378 Phosphotransferase system, EIIC Aa23S_1364 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 Aa23S_1364 PF00367 phosphotransferase system, EIIB Aa23S_14 PF01578 Cytochrome C assembly protein Aa23S_14 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal Aa23S_1407 PF02033 Ribosome-binding factor A Aa23S_1414 PF02233 NAD(P) transhydrogenase beta subunit Aa23S_1438 PF02674 Colicin V production protein Aa23S_1440 PF00343 Carbohydrate phosphorylase Aa23S_1443 PF00456 Transketolase, thiamine diphosphate binding domain Aa23S_1443 PF17831 Pyruvate dehydrogenase E1 component middle domain Aa23S_1444 PF02817 e3 binding domain Aa23S_1444 PF00364 Biotin-requiring enzyme Aa23S_1444 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Aa23S_1448 PF01343 Peptidase family S49 Aa23S_146 PF02653 Branched-chain amino acid transport system / permease component Aa23S_1466 PF01641 SelR domain Aa23S_1466 PF01625 Peptide methionine sulfoxide reductase Aa23S_1468 PF04972 BON domain Aa23S_1477 PF01343 Peptidase family S49 Aa23S_1477 PF08496 Peptidase family S49 N-terminal Aa23S_1478 PF00691 OmpA family Aa23S_1478 PF05736 OprF membrane domain Aa23S_148 PF00294 pfkB family carbohydrate kinase Aa23S_1498 PF00348 Polyprenyl synthetase Aa23S_1501 PF08245 Mur ligase middle domain Aa23S_1515 PF02321 Outer membrane efflux protein Aa23S_1522 PF18390 Glycogen debranching enzyme C-terminal domain Aa23S_1522 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Aa23S_1522 PF00128 Alpha amylase, catalytic domain Aa23S_1533 PF04288 MukE-like family Aa23S_1552 PF03958 Bacterial type II/III secretion system short domain Aa23S_1552 PF00263 Bacterial type II and III secretion system protein Aa23S_1571 PF01751 Toprim domain Aa23S_1571 PF01131 DNA topoisomerase Aa23S_1571 PF08272 Topoisomerase I zinc-ribbon-like Aa23S_1571 PF01396 Topoisomerase DNA binding C4 zinc finger Aa23S_1573 PF01180 Dihydroorotate dehydrogenase Aa23S_1578 PF00005 ABC transporter Aa23S_1587 PF00593 TonB dependent receptor Aa23S_1587 PF07715 TonB-dependent Receptor Plug Domain Aa23S_1588 PF00005 ABC transporter Aa23S_1589 PF01032 FecCD transport family Aa23S_1593 PF00593 TonB dependent receptor Aa23S_1595 PF01171 PP-loop family Aa23S_1607 PF02885 Glycosyl transferase family, helical bundle domain Aa23S_1607 PF00591 Glycosyl transferase family, a/b domain Aa23S_1628 PF00593 TonB dependent receptor Aa23S_1628 PF07715 TonB-dependent Receptor Plug Domain Aa23S_1641 PF02653 Branched-chain amino acid transport system / permease component Aa23S_1659 PF03575 Peptidase family S51 Aa23S_1669 PF01416 tRNA pseudouridine synthase Aa23S_167 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Aa23S_1686 PF00486 Transcriptional regulatory protein, C terminal Aa23S_1686 PF00072 Response regulator receiver domain Aa23S_1693 PF01842 ACT domain Aa23S_1693 PF00551 Formyl transferase Aa23S_1700 PF02824 TGS domain Aa23S_1700 PF04607 Region found in RelA / SpoT proteins Aa23S_1700 PF13328 HD domain Aa23S_1700 PF13291 ACT domain Aa23S_1708 PF02601 Exonuclease VII, large subunit Aa23S_1708 PF13742 OB-fold nucleic acid binding domain Aa23S_1716 PF02470 MlaD protein Aa23S_1735 PF03797 Autotransporter beta-domain Aa23S_1735 PF02395 Immunoglobulin A1 protease Aa23S_1735 PF03212 Pertactin Aa23S_1748 PF00291 Pyridoxal-phosphate dependent enzyme Aa23S_1748 PF14821 Threonine synthase N terminus Aa23S_175 PF00905 Penicillin binding protein transpeptidase domain Aa23S_175 PF03717 Penicillin-binding Protein dimerisation domain Aa23S_1750 PF01145 SPFH domain / Band 7 family Aa23S_1756 PF04055 Radical SAM superfamily Aa23S_1756 PF06969 HemN C-terminal domain Aa23S_1757 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) Aa23S_1762 PF02614 Glucuronate isomerase Aa23S_1769 PF07729 FCD domain Aa23S_1769 PF00392 Bacterial regulatory proteins, gntR family Aa23S_1781 PF00265 Thymidine kinase Aa23S_1782 PF00533 BRCA1 C Terminus (BRCT) domain Aa23S_1782 PF03119 NAD-dependent DNA ligase C4 zinc finger domain Aa23S_1782 PF03120 NAD-dependent DNA ligase OB-fold domain Aa23S_1782 PF01653 NAD-dependent DNA ligase adenylation domain Aa23S_1782 PF12826 Helix-hairpin-helix motif Aa23S_1785 PF00291 Pyridoxal-phosphate dependent enzyme Aa23S_1793 PF08335 GlnD PII-uridylyltransferase Aa23S_1793 PF01966 HD domain Aa23S_1794 PF00557 Metallopeptidase family M24 Aa23S_1801 PF12704 MacB-like periplasmic core domain Aa23S_1801 PF02687 FtsX-like permease family Aa23S_1803 PF12704 MacB-like periplasmic core domain Aa23S_1803 PF02687 FtsX-like permease family Aa23S_1803 PF00005 ABC transporter Aa23S_1811 PF04408 Helicase associated domain (HA2) Aa23S_1811 PF11898 Domain of unknown function (DUF3418) Aa23S_1811 PF00270 DEAD/DEAH box helicase Aa23S_1811 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold Aa23S_1811 PF00271 Helicase conserved C-terminal domain Aa23S_1812 PF04241 Protein of unknown function (DUF423) Aa23S_1818 PF03061 Thioesterase superfamily Aa23S_1820 PF08534 Redoxin Aa23S_1824 PF01380 SIS domain Aa23S_1824 PF01418 Helix-turn-helix domain, rpiR family Aa23S_1828 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component Aa23S_1828 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Aa23S_1845 PF01042 Endoribonuclease L-PSP Aa23S_1849 PF12170 DNA polymerase III tau subunit V interacting with alpha Aa23S_1849 PF12169 DNA polymerase III subunits gamma and tau domain III Aa23S_1850 PF00156 Phosphoribosyl transferase domain Aa23S_1861 PF00521 DNA gyrase/topoisomerase IV, subunit A Aa23S_1861 PF03989 DNA gyrase C-terminal domain, beta-propeller Aa23S_1867 PF00216 Bacterial DNA-binding protein Aa23S_1878 PF06250 YhcG PDDEXK nuclease domain Aa23S_1878 PF17761 DUF1016 N-terminal domain Aa23S_188 PF02620 Large ribosomal RNA subunit accumulation protein YceD Aa23S_1883 PF01297 Zinc-uptake complex component A periplasmic Aa23S_1885 PF00950 ABC 3 transport family Aa23S_1888 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) Aa23S_1889 PF02142 MGS-like domain Aa23S_1890 PF03733 Inner membrane component domain Aa23S_1891 PF12805 FUSC-like inner membrane protein yccS Aa23S_19 PF02335 Cytochrome c552 Aa23S_190 PF08241 Methyltransferase domain Aa23S_194 PF02666 Phosphatidylserine decarboxylase Aa23S_1942 PF02397 Bacterial sugar transferase Aa23S_1957 PF16363 GDP-mannose 4,6 dehydratase Aa23S_198 PF01472 PUA domain Aa23S_198 PF00696 Amino acid kinase family Aa23S_1984 PF02316 Mu DNA-binding domain Aa23S_1984 PF02914 Bacteriophage Mu transposase Aa23S_1984 PF09039 Mu DNA binding, I gamma subdomain Aa23S_1984 PF09299 Mu transposase, C-terminal Aa23S_1986 PF01292 Prokaryotic cytochrome b561 Aa23S_1989 PF12798 4Fe-4S binding domain Aa23S_1989 PF00037 4Fe-4S binding domain Aa23S_1990 PF00361 Proton-conducting membrane transporter Aa23S_1992 PF00361 Proton-conducting membrane transporter Aa23S_1992 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Aa23S_1995 PF00374 Nickel-dependent hydrogenase Aa23S_1995 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Aa23S_1995 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Aa23S_1996 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Aa23S_1996 PF00374 Nickel-dependent hydrogenase Aa23S_1996 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Aa23S_2009 PF05951 Bacterial protein of unknown function (DUF882) Aa23S_2019 PF13416 Bacterial extracellular solute-binding protein Aa23S_2021 PF02403 Seryl-tRNA synthetase N-terminal domain Aa23S_2021 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Aa23S_2023 PF00004 ATPase family associated with various cellular activities (AAA) Aa23S_2023 PF16193 AAA C-terminal domain Aa23S_2023 PF12002 MgsA AAA+ ATPase C terminal Aa23S_2030 PF01384 Phosphate transporter family Aa23S_2033 PF03550 Outer membrane lipoprotein LolB Aa23S_2055 PF02547 Queuosine biosynthesis protein Aa23S_2064 PF00465 Iron-containing alcohol dehydrogenase Aa23S_2064 PF00171 Aldehyde dehydrogenase family Aa23S_2085 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) Aa23S_2085 PF08339 RTX C-terminal domain Aa23S_2085 PF02382 N-terminal domain in RTX protein Aa23S_2097 PF04052 TolB amino-terminal domain Aa23S_2097 PF07676 WD40-like Beta Propeller Repeat Aa23S_2111 PF01709 Transcriptional regulator Aa23S_2115 PF00152 tRNA synthetases class II (D, K and N) Aa23S_2115 PF01336 OB-fold nucleic acid binding domain Aa23S_2115 PF02938 GAD domain Aa23S_2135 PF01926 50S ribosome-binding GTPase Aa23S_2135 PF01018 GTP1/OBG Aa23S_2138 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Aa23S_214 PF02447 GntP family permease Aa23S_2141 PF12911 N-terminal TM domain of oligopeptide transport permease C Aa23S_2141 PF00528 Binding-protein-dependent transport system inner membrane component Aa23S_2155 PF01053 Cys/Met metabolism PLP-dependent enzyme Aa23S_2158 PF03524 Conjugal transfer protein Aa23S_2164 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain Aa23S_2173 PF01649 Ribosomal protein S20 Aa23S_2175 PF01687 Riboflavin kinase Aa23S_2175 PF06574 FAD synthetase Aa23S_2179 PF02401 LytB protein Aa23S_2181 PF00589 Phage integrase family Aa23S_2181 PF02899 Phage integrase, N-terminal SAM-like domain Aa23S_2187 PF04225 Opacity-associated protein A LysM-like domain Aa23S_2187 PF08525 Opacity-associated protein A N-terminal motif Aa23S_2193 PF08348 YheO-like PAS domain Aa23S_2193 PF13309 HTH domain Aa23S_2202 PF01230 HIT domain Aa23S_2205 PF05958 tRNA (Uracil-5-)-methyltransferase Aa23S_2212 PF01228 Glycine radical Aa23S_2219 PF01809 Putative membrane protein insertion efficiency factor Aa23S_237 PF00687 Ribosomal protein L1p/L10e family Aa23S_240 PF16320 Ribosomal protein L7/L12 dimerisation domain Aa23S_240 PF00542 Ribosomal protein L7/L12 C-terminal domain Aa23S_248 PF00237 Ribosomal protein L22p/L17e Aa23S_251 PF00276 Ribosomal protein L23 Aa23S_252 PF00573 Ribosomal protein L4/L1 family Aa23S_255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Aa23S_255 PF03466 LysR substrate binding domain Aa23S_257 PF01144 Coenzyme A transferase Aa23S_259 PF02667 Short chain fatty acid transporter Aa23S_269 PF01048 Phosphorylase superfamily Aa23S_27 PF04995 Heme exporter protein D (CcmD) Aa23S_270 PF01594 AI-2E family transporter Aa23S_280 PF01741 Large-conductance mechanosensitive channel, MscL Aa23S_314 PF01078 Magnesium chelatase, subunit ChlI Aa23S_314 PF13335 Magnesium chelatase, subunit ChlI C-terminal Aa23S_322 PF07724 AAA domain (Cdc48 subfamily) Aa23S_322 PF00004 ATPase family associated with various cellular activities (AAA) Aa23S_322 PF10431 C-terminal, D2-small domain, of ClpB protein Aa23S_323 PF00227 Proteasome subunit Aa23S_343 PF00535 Glycosyl transferase family 2 Aa23S_345 PF07690 Major Facilitator Superfamily Aa23S_355 PF02664 S-Ribosylhomocysteinase (LuxS) Aa23S_367 PF00149 Calcineurin-like phosphoesterase Aa23S_367 PF02872 5'-nucleotidase, C-terminal domain Aa23S_382 PF01565 FAD binding domain Aa23S_382 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain Aa23S_39 PF07690 Major Facilitator Superfamily Aa23S_394 PF08501 Shikimate dehydrogenase substrate binding domain Aa23S_394 PF18317 Shikimate 5'-dehydrogenase C-terminal domain Aa23S_394 PF01488 Shikimate / quinate 5-dehydrogenase Aa23S_398 PF03350 Uncharacterized protein family, UPF0114 Aa23S_4 PF13649 Methyltransferase domain Aa23S_40 PF00849 RNA pseudouridylate synthase Aa23S_40 PF01479 S4 domain Aa23S_401 PF01694 Rhomboid family Aa23S_418 PF02684 Lipid-A-disaccharide synthetase Aa23S_42 PF01515 Phosphate acetyl/butaryl transferase Aa23S_42 PF03949 Malic enzyme, NAD binding domain Aa23S_42 PF00390 Malic enzyme, N-terminal domain Aa23S_423 PF00994 Probable molybdopterin binding domain Aa23S_426 PF02780 Transketolase, C-terminal domain Aa23S_426 PF02779 Transketolase, pyrimidine binding domain Aa23S_426 PF00456 Transketolase, thiamine diphosphate binding domain Aa23S_435 PF01791 DeoC/LacD family aldolase Aa23S_458 PF00005 ABC transporter Aa23S_458 PF00664 ABC transporter transmembrane region Aa23S_465 PF06005 Cell division protein ZapB Aa23S_466 PF00258 Flavodoxin Aa23S_469 PF01638 HxlR-like helix-turn-helix Aa23S_476 PF00306 ATP synthase alpha/beta chain, C terminal domain Aa23S_476 PF02874 ATP synthase alpha/beta family, beta-barrel domain Aa23S_476 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Aa23S_479 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain Aa23S_487 PF12161 HsdM N-terminal domain Aa23S_487 PF02384 N-6 DNA Methylase Aa23S_54 PF00155 Aminotransferase class I and II Aa23S_546 PF07690 Major Facilitator Superfamily Aa23S_558 PF05195 Aminopeptidase P, N-terminal domain Aa23S_558 PF00557 Metallopeptidase family M24 Aa23S_562 PF13525 Outer membrane lipoprotein Aa23S_569 PF01544 CorA-like Mg2+ transporter protein Aa23S_579 PF01197 Ribosomal protein L31 Aa23S_607 PF00665 Integrase core domain Aa23S_607 PF13276 HTH-like domain Aa23S_61 PF03222 Tryptophan/tyrosine permease family Aa23S_631 PF00756 Putative esterase Aa23S_636 PF01618 MotA/TolQ/ExbB proton channel family Aa23S_643 PF17841 BID domain of Bartonella effector protein (Bep) Aa23S_643 PF02661 Fic/DOC family Aa23S_659 PF00490 Delta-aminolevulinic acid dehydratase Aa23S_668 PF04224 Protein of unknown function, DUF417 Aa23S_68 PF13393 Histidyl-tRNA synthetase Aa23S_68 PF03129 Anticodon binding domain Aa23S_683 PF02801 Beta-ketoacyl synthase, C-terminal domain Aa23S_683 PF00109 Beta-ketoacyl synthase, N-terminal domain Aa23S_69 PF09976 Tetratricopeptide repeat-like domain Aa23S_711 PF00156 Phosphoribosyl transferase domain Aa23S_716 PF01797 Transposase IS200 like Aa23S_735 PF03222 Tryptophan/tyrosine permease family Aa23S_737 PF13521 AAA domain Aa23S_737 PF01467 Cytidylyltransferase-like Aa23S_755 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Aa23S_755 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Aa23S_759 PF02824 TGS domain Aa23S_759 PF13291 ACT domain Aa23S_759 PF13328 HD domain Aa23S_759 PF04607 Region found in RelA / SpoT proteins Aa23S_761 PF11967 Recombination protein O N terminal Aa23S_761 PF02565 Recombination protein O C terminal Aa23S_762 PF00889 Elongation factor TS Aa23S_765 PF01571 Aminomethyltransferase folate-binding domain Aa23S_788 PF02508 Rnf-Nqr subunit, membrane protein Aa23S_797 PF02622 Uncharacterized ACR, COG1678 Aa23S_803 PF01411 tRNA synthetases class II (A) Aa23S_803 PF02272 DHHA1 domain Aa23S_803 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Aa23S_805 PF03819 MazG nucleotide pyrophosphohydrolase domain Aa23S_811 PF00486 Transcriptional regulatory protein, C terminal Aa23S_811 PF00072 Response regulator receiver domain Aa23S_812 PF00672 HAMP domain Aa23S_812 PF16527 Two-component sensor protein CpxA, periplasmic domain Aa23S_812 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Aa23S_812 PF00512 His Kinase A (phospho-acceptor) domain Aa23S_82 PF05675 Protein of unknown function (DUF817) Aa23S_844 PF00293 NUDIX domain Aa23S_844 PF09297 NADH pyrophosphatase zinc ribbon domain Aa23S_851 PF00196 Bacterial regulatory proteins, luxR family Aa23S_851 PF00072 Response regulator receiver domain Aa23S_853 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain Aa23S_853 PF03900 Porphobilinogen deaminase, C-terminal domain Aa23S_863 PF00300 Histidine phosphatase superfamily (branch 1) Aa23S_868 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Aa23S_868 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Aa23S_875 PF00271 Helicase conserved C-terminal domain Aa23S_875 PF00570 HRDC domain Aa23S_875 PF16124 RecQ zinc-binding Aa23S_875 PF09382 RQC domain Aa23S_875 PF00270 DEAD/DEAH box helicase Aa23S_882 PF00156 Phosphoribosyl transferase domain Aa23S_893 PF12390 Selenocysteine synthase N terminal Aa23S_893 PF03841 L-seryl-tRNA selenium transferase Aa23S_894 PF03144 Elongation factor Tu domain 2 Aa23S_894 PF09107 Elongation factor SelB, winged helix Aa23S_894 PF09106 Elongation factor SelB, winged helix Aa23S_894 PF00009 Elongation factor Tu GTP binding domain Aa23S_921 PF17757 UvrB interaction domain Aa23S_921 PF02559 CarD-like/TRCF domain Aa23S_921 PF03461 TRCF domain Aa23S_921 PF00271 Helicase conserved C-terminal domain Aa23S_921 PF00270 DEAD/DEAH box helicase Aa23S_937 PF01098 Cell cycle protein Aa23S_943 PF00091 Tubulin/FtsZ family, GTPase domain Aa23S_943 PF12327 FtsZ family, C-terminal domain Aa23S_957 PF13173 AAA domain Aa23S_957 PF13635 Domain of unknown function (DUF4143) Aa23S_963 PF02910 Fumarate reductase flavoprotein C-term Aa23S_963 PF00890 FAD binding domain Aa23S_966 PF00005 ABC transporter Aa23S_97 PF02447 GntP family permease Aa23S_973 PF01751 Toprim domain Aa23S_973 PF01131 DNA topoisomerase Aa23S_977 PF00912 Transglycosylase Aa23S_995 PF00005 ABC transporter Aa30R_1012 PF07715 TonB-dependent Receptor Plug Domain Aa30R_1012 PF04886 PT repeat Aa30R_1012 PF00593 TonB dependent receptor Aa30R_1013 PF04886 PT repeat Aa30R_1013 PF07715 TonB-dependent Receptor Plug Domain Aa30R_1013 PF00593 TonB dependent receptor Aa30R_1014 PF05430 S-adenosyl-L-methionine-dependent methyltransferase Aa30R_1014 PF01266 FAD dependent oxidoreductase Aa30R_1017 PF02653 Branched-chain amino acid transport system / permease component Aa30R_1018 PF00005 ABC transporter Aa30R_1019 PF13407 Periplasmic binding protein domain Aa30R_1021 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain Aa30R_1021 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain Aa30R_103 PF04233 Phage Mu protein F like protein Aa30R_1034 PF00795 Carbon-nitrogen hydrolase Aa30R_104 PF06074 Protein of unknown function (DUF935) Aa30R_1040 PF10609 NUBPL iron-transfer P-loop NTPase Aa30R_105 PF03237 Terminase-like family Aa30R_1058 PF06559 2'-deoxycytidine 5'-triphosphate deaminase (DCD) Aa30R_1060 PF07690 Major Facilitator Superfamily Aa30R_1065 PF08003 Protein of unknown function (DUF1698) Aa30R_1066 PF00474 Sodium:solute symporter family Aa30R_1068 PF04399 Glutaredoxin 2, C terminal domain Aa30R_1068 PF13417 Glutathione S-transferase, N-terminal domain Aa30R_1069 PF02146 Sir2 family Aa30R_1084 PF00012 Hsp70 protein Aa30R_1086 PF05746 DALR anticodon binding domain Aa30R_1086 PF00750 tRNA synthetases class I (R) Aa30R_1086 PF03485 Arginyl tRNA synthetase N terminal domain Aa30R_1087 PF06185 YecM protein Aa30R_109 PF00574 Clp protease Aa30R_1094 PF03775 Septum formation inhibitor MinC, C-terminal domain Aa30R_1094 PF05209 Septum formation inhibitor MinC, N-terminal domain Aa30R_1096 PF00300 Histidine phosphatase superfamily (branch 1) Aa30R_1103 PF03099 Biotin/lipoate A/B protein ligase family Aa30R_1103 PF02237 Biotin protein ligase C terminal domain Aa30R_1118 PF01520 N-acetylmuramoyl-L-alanine amidase Aa30R_1118 PF01476 LysM domain Aa30R_1124 PF00884 Sulfatase Aa30R_1133 PF01063 Amino-transferase class IV Aa30R_1134 PF00425 chorismate binding enzyme Aa30R_1144 PF00342 Phosphoglucose isomerase Aa30R_1149 PF01810 LysE type translocator Aa30R_1160 PF00528 Binding-protein-dependent transport system inner membrane component Aa30R_1162 PF00128 Alpha amylase, catalytic domain Aa30R_1167 PF02264 LamB porin Aa30R_1168 PF07148 Maltose operon periplasmic protein precursor (MalM) Aa30R_1177 PF01381 Helix-turn-helix Aa30R_1180 PF04073 Aminoacyl-tRNA editing domain Aa30R_1184 PF00005 ABC transporter Aa30R_119 PF03737 Aldolase/RraA Aa30R_1196 PF00596 Class II Aldolase and Adducin N-terminal domain Aa30R_1206 PF04266 ASCH domain Aa30R_1218 PF08206 Ribonuclease B OB domain Aa30R_1218 PF00773 RNB domain Aa30R_1218 PF00575 S1 RNA binding domain Aa30R_1220 PF01784 NIF3 (NGG1p interacting factor 3) Aa30R_1227 PF17768 RecJ OB domain Aa30R_1227 PF01368 DHH family Aa30R_1227 PF02272 DHHA1 domain Aa30R_1237 PF02769 AIR synthase related protein, C-terminal domain Aa30R_1237 PF00586 AIR synthase related protein, N-terminal domain Aa30R_1240 PF09039 Mu DNA binding, I gamma subdomain Aa30R_1240 PF02914 Bacteriophage Mu transposase Aa30R_1240 PF02316 Mu DNA-binding domain Aa30R_1240 PF09299 Mu transposase, C-terminal Aa30R_1252 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Aa30R_1252 PF03459 TOBE domain Aa30R_1269 PF04205 FMN-binding domain Aa30R_1279 PF01497 Periplasmic binding protein Aa30R_1284 PF00486 Transcriptional regulatory protein, C terminal Aa30R_1284 PF00072 Response regulator receiver domain Aa30R_1289 PF00072 Response regulator receiver domain Aa30R_1289 PF00486 Transcriptional regulatory protein, C terminal Aa30R_129 PF00271 Helicase conserved C-terminal domain Aa30R_129 PF03880 DbpA RNA binding domain Aa30R_129 PF00270 DEAD/DEAH box helicase Aa30R_1290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Aa30R_1290 PF08521 Two-component sensor kinase N-terminal Aa30R_1290 PF00512 His Kinase A (phospho-acceptor) domain Aa30R_1296 PF05973 Phage derived protein Gp49-like (DUF891) Aa30R_1309 PF01238 Phosphomannose isomerase type I Aa30R_131 PF00575 S1 RNA binding domain Aa30R_131 PF03725 3' exoribonuclease family, domain 2 Aa30R_131 PF01138 3' exoribonuclease family, domain 1 Aa30R_131 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain Aa30R_131 PF00013 KH domain Aa30R_1311 PF02378 Phosphotransferase system, EIIC Aa30R_1311 PF00367 phosphotransferase system, EIIB Aa30R_132 PF04074 YhcH/YjgK/YiaL Aa30R_1320 PF01370 NAD dependent epimerase/dehydratase family Aa30R_1322 PF00860 Permease family Aa30R_1349 PF01555 DNA methylase Aa30R_1349 PF18273 Type III R-M EcoP15I C-terminal domain Aa30R_1352 PF00271 Helicase conserved C-terminal domain Aa30R_1352 PF00176 SNF2 family N-terminal domain Aa30R_1371 PF02348 Cytidylyltransferase Aa30R_1375 PF00753 Metallo-beta-lactamase superfamily Aa30R_1375 PF13567 Domain of unknown function (DUF4131) Aa30R_1375 PF03772 Competence protein Aa30R_1377 PF12626 Polymerase A arginine-rich C-terminus Aa30R_1377 PF12627 Probable RNA and SrmB- binding site of polymerase A Aa30R_1377 PF01743 Poly A polymerase head domain Aa30R_1400 PF03466 LysR substrate binding domain Aa30R_1400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Aa30R_1401 PF00132 Bacterial transferase hexapeptide (six repeats) Aa30R_1401 PF14602 Hexapeptide repeat of succinyl-transferase Aa30R_1401 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal Aa30R_1421 PF02525 Flavodoxin-like fold Aa30R_1430 PF01632 Ribosomal protein L35 Aa30R_1447 PF03956 Lysine exporter LysO Aa30R_145 PF01207 Dihydrouridine synthase (Dus) Aa30R_1459 PF12704 MacB-like periplasmic core domain Aa30R_1459 PF02687 FtsX-like permease family Aa30R_1459 PF00005 ABC transporter Aa30R_1472 PF00768 D-alanyl-D-alanine carboxypeptidase Aa30R_1473 PF00768 D-alanyl-D-alanine carboxypeptidase Aa30R_1474 PF03882 MukF winged-helix domain Aa30R_1474 PF17193 MukF C-terminal domain Aa30R_1474 PF17192 MukF middle domain Aa30R_1476 PF00501 AMP-binding enzyme Aa30R_1476 PF01553 Acyltransferase Aa30R_1492 PF00582 Universal stress protein family Aa30R_1494 PF01751 Toprim domain Aa30R_1494 PF01131 DNA topoisomerase Aa30R_1494 PF08272 Topoisomerase I zinc-ribbon-like Aa30R_1494 PF01396 Topoisomerase DNA binding C4 zinc finger Aa30R_15 PF12462 DNA helicase IV / RNA helicase N terminal Aa30R_15 PF00580 UvrD/REP helicase N-terminal domain Aa30R_15 PF13361 UvrD-like helicase C-terminal domain Aa30R_150 PF04575 Protein of unknown function (DUF560) Aa30R_1511 PF01032 FecCD transport family Aa30R_1520 PF03483 B3/4 domain Aa30R_1520 PF03147 Ferredoxin-fold anticodon binding domain Aa30R_1520 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain Aa30R_1520 PF03484 tRNA synthetase B5 domain Aa30R_1520 PF01588 Putative tRNA binding domain Aa30R_1521 PF01409 tRNA synthetases class II core domain (F) Aa30R_1521 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain Aa30R_1527 PF04715 Anthranilate synthase component I, N terminal region Aa30R_1527 PF00425 chorismate binding enzyme Aa30R_1533 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Aa30R_1533 PF00218 Indole-3-glycerol phosphate synthase Aa30R_1534 PF00218 Indole-3-glycerol phosphate synthase Aa30R_1534 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Aa30R_1542 PF00593 TonB dependent receptor Aa30R_1542 PF07715 TonB-dependent Receptor Plug Domain Aa30R_1543 PF00593 TonB dependent receptor Aa30R_1543 PF07715 TonB-dependent Receptor Plug Domain Aa30R_1545 PF00106 short chain dehydrogenase Aa30R_1551 PF03992 Antibiotic biosynthesis monooxygenase Aa30R_1557 PF02653 Branched-chain amino acid transport system / permease component Aa30R_1561 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Aa30R_1561 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Aa30R_1563 PF00480 ROK family Aa30R_1564 PF00152 tRNA synthetases class II (D, K and N) Aa30R_1564 PF01336 OB-fold nucleic acid binding domain Aa30R_1589 PF07977 FabA-like domain Aa30R_159 PF00378 Enoyl-CoA hydratase/isomerase Aa30R_1591 PF06303 MatP N-terminal domain Aa30R_1591 PF17414 MatP C-terminal ribbon-helix-helix domain Aa30R_1595 PF04287 tRNA pseudouridine synthase C Aa30R_1598 PF00072 Response regulator receiver domain Aa30R_1598 PF02954 Bacterial regulatory protein, Fis family Aa30R_1598 PF00158 Sigma-54 interaction domain Aa30R_1607 PF01842 ACT domain Aa30R_1607 PF00551 Formyl transferase Aa30R_1618 PF03364 Polyketide cyclase / dehydrase and lipid transport Aa30R_1619 PF03658 RnfH family Ubiquitin Aa30R_162 PF06969 HemN C-terminal domain Aa30R_162 PF04055 Radical SAM superfamily Aa30R_1620 PF08007 Cupin superfamily protein Aa30R_1626 PF06835 Lipopolysaccharide-assembly, LptC-related Aa30R_1637 PF00535 Glycosyl transferase family 2 Aa30R_1641 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) Aa30R_1646 PF13276 HTH-like domain Aa30R_1646 PF00665 Integrase core domain Aa30R_1648 PF00679 Elongation factor G C-terminus Aa30R_1648 PF03144 Elongation factor Tu domain 2 Aa30R_1648 PF00009 Elongation factor Tu GTP binding domain Aa30R_1650 PF00578 AhpC/TSA family Aa30R_1651 PF00701 Dihydrodipicolinate synthetase family Aa30R_1669 PF01906 Putative heavy-metal-binding Aa30R_1670 PF06969 HemN C-terminal domain Aa30R_1670 PF04055 Radical SAM superfamily Aa30R_1676 PF02614 Glucuronate isomerase Aa30R_1679 PF03480 Bacterial extracellular solute-binding protein, family 7 Aa30R_1681 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Aa30R_1691 PF01165 Ribosomal protein S21 Aa30R_1697 PF04354 ZipA, C-terminal FtsZ-binding domain Aa30R_1702 PF01926 50S ribosome-binding GTPase Aa30R_1702 PF06071 Protein of unknown function (DUF933) Aa30R_1707 PF08335 GlnD PII-uridylyltransferase Aa30R_1707 PF01966 HD domain Aa30R_1711 PF00912 Transglycosylase Aa30R_1711 PF00905 Penicillin binding protein transpeptidase domain Aa30R_1711 PF14814 Bifunctional transglycosylase second domain Aa30R_172 PF02653 Branched-chain amino acid transport system / permease component Aa30R_173 PF13407 Periplasmic binding protein domain Aa30R_1732 PF00762 Ferrochelatase Aa30R_1739 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase Aa30R_1740 PF03480 Bacterial extracellular solute-binding protein, family 7 Aa30R_1753 PF00521 DNA gyrase/topoisomerase IV, subunit A Aa30R_1753 PF03989 DNA gyrase C-terminal domain, beta-propeller Aa30R_1769 PF00501 AMP-binding enzyme Aa30R_1779 PF06305 Lipopolysaccharide assembly protein A domain Aa30R_1784 PF07715 TonB-dependent Receptor Plug Domain Aa30R_1791 PF08267 Cobalamin-independent synthase, N-terminal domain Aa30R_1791 PF01717 Cobalamin-independent synthase, Catalytic domain Aa30R_1801 PF00950 ABC 3 transport family Aa30R_1803 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) Aa30R_1806 PF12805 FUSC-like inner membrane protein yccS Aa30R_1817 PF04172 LrgB-like family Aa30R_182 PF07733 Bacterial DNA polymerase III alpha NTPase domain Aa30R_182 PF01336 OB-fold nucleic acid binding domain Aa30R_182 PF14579 Helix-hairpin-helix motif Aa30R_182 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Aa30R_182 PF02811 PHP domain Aa30R_1821 PF02657 Fe-S metabolism associated domain Aa30R_1852 PF16363 GDP-mannose 4,6 dehydratase Aa30R_1855 PF03372 Endonuclease/Exonuclease/phosphatase family Aa30R_1859 PF00535 Glycosyl transferase family 2 Aa30R_186 PF03477 ATP cone domain Aa30R_186 PF13597 Anaerobic ribonucleoside-triphosphate reductase Aa30R_1866 PF00535 Glycosyl transferase family 2 Aa30R_1871 PF00483 Nucleotidyl transferase Aa30R_1884 PF00580 UvrD/REP helicase N-terminal domain Aa30R_1884 PF13361 UvrD-like helicase C-terminal domain Aa30R_189 PF01026 TatD related DNase Aa30R_1892 PF13247 4Fe-4S dicluster domain Aa30R_1892 PF09163 Formate dehydrogenase N, transmembrane Aa30R_1900 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Aa30R_1914 PF00753 Metallo-beta-lactamase superfamily Aa30R_1921 PF01546 Peptidase family M20/M25/M40 Aa30R_1921 PF07687 Peptidase dimerisation domain Aa30R_194 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family Aa30R_194 PF04055 Radical SAM superfamily Aa30R_1946 PF00266 Aminotransferase class-V Aa30R_1952 PF05016 ParE toxin of type II toxin-antitoxin system, parDE Aa30R_1955 PF01136 Peptidase family U32 Aa30R_1955 PF16325 Peptidase family U32 C-terminal domain Aa30R_1968 PF13407 Periplasmic binding protein domain Aa30R_1976 PF00294 pfkB family carbohydrate kinase Aa30R_198 PF03330 Lytic transglycolase Aa30R_198 PF05036 Sporulation related domain Aa30R_1983 PF02382 N-terminal domain in RTX protein Aa30R_1983 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) Aa30R_1983 PF08339 RTX C-terminal domain Aa30R_1986 PF00464 Serine hydroxymethyltransferase Aa30R_1991 PF03603 DNA polymerase III psi subunit Aa30R_1993 PF17946 RecC C-terminal domain Aa30R_1996 PF07963 Prokaryotic N-terminal methylation motif Aa30R_2002 PF03061 Thioesterase superfamily Aa30R_2005 PF02322 Cytochrome bd terminal oxidase subunit II Aa30R_2008 PF05496 Holliday junction DNA helicase RuvB P-loop domain Aa30R_2008 PF05491 RuvB C-terminal winged helix domain Aa30R_2008 PF17864 RuvB AAA lid domain Aa30R_2018 PF13649 Methyltransferase domain Aa30R_2034 PF00892 EamA-like transporter family Aa30R_2039 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Aa30R_2048 PF00444 Ribosomal protein L36 Aa30R_2049 PF01197 Ribosomal protein L31 Aa30R_2062 PF00171 Aldehyde dehydrogenase family Aa30R_2069 PF00899 ThiF family Aa30R_2072 PF04461 Protein of unknown function (DUF520) Aa30R_2074 PF10144 Bacterial virulence factor haemolysin Aa30R_2079 PF06827 Zinc finger found in FPG and IleRS Aa30R_2079 PF08264 Anticodon-binding domain of tRNA Aa30R_2079 PF00133 tRNA synthetases class I (I, L, M and V) Aa30R_2082 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Aa30R_2082 PF05698 Bacterial trigger factor protein (TF) C-terminus Aa30R_2082 PF05697 Bacterial trigger factor protein (TF) Aa30R_2090 PF04055 Radical SAM superfamily Aa30R_2094 PF01212 Beta-eliminating lyase Aa30R_2108 PF05958 tRNA (Uracil-5-)-methyltransferase Aa30R_2116 PF00679 Elongation factor G C-terminus Aa30R_2116 PF00009 Elongation factor Tu GTP binding domain Aa30R_2116 PF06421 GTP-binding protein LepA C-terminus Aa30R_2116 PF03144 Elongation factor Tu domain 2 Aa30R_2122 PF01809 Putative membrane protein insertion efficiency factor Aa30R_220 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Aa30R_220 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase Aa30R_231 PF02223 Thymidylate kinase Aa30R_234 PF08220 DeoR-like helix-turn-helix domain Aa30R_234 PF00455 DeoR C terminal sensor domain Aa30R_237 PF00596 Class II Aldolase and Adducin N-terminal domain Aa30R_241 PF00488 MutS domain V Aa30R_241 PF01624 MutS domain I Aa30R_241 PF05192 MutS domain III Aa30R_241 PF05188 MutS domain II Aa30R_241 PF05190 MutS family domain IV Aa30R_246 PF04219 Protein of unknown function, DUF Aa30R_251 PF00381 PTS HPr component phosphorylation site Aa30R_251 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Aa30R_253 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Aa30R_258 PF00584 SecE/Sec61-gamma subunits of protein translocation complex Aa30R_265 PF04560 RNA polymerase Rpb2, domain 7 Aa30R_265 PF00562 RNA polymerase Rpb2, domain 6 Aa30R_265 PF04563 RNA polymerase beta subunit Aa30R_265 PF10385 RNA polymerase beta subunit external 1 domain Aa30R_265 PF04561 RNA polymerase Rpb2, domain 2 Aa30R_265 PF04565 RNA polymerase Rpb2, domain 3 Aa30R_267 PF01797 Transposase IS200 like Aa30R_268 PF00366 Ribosomal protein S17 Aa30R_277 PF00297 Ribosomal protein L3 Aa30R_278 PF00338 Ribosomal protein S10p/S20e Aa30R_280 PF01144 Coenzyme A transferase Aa30R_287 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Aa30R_287 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Aa30R_297 PF00919 Uncharacterized protein family UPF0004 Aa30R_297 PF04055 Radical SAM superfamily Aa30R_297 PF18693 TRAM domain Aa30R_3 PF02463 RecF/RecN/SMC N terminal domain Aa30R_309 PF09383 NIL domain Aa30R_309 PF00005 ABC transporter Aa30R_313 PF00588 SpoU rRNA Methylase family Aa30R_335 PF00665 Integrase core domain Aa30R_342 PF03887 YfbU domain Aa30R_343 PF04333 MlaA lipoprotein Aa30R_357 PF03830 PTS system sorbose subfamily IIB component Aa30R_357 PF03610 PTS system fructose IIA component Aa30R_358 PF03609 PTS system sorbose-specific iic component Aa30R_368 PF07690 Major Facilitator Superfamily Aa30R_369 PF01243 Pyridoxamine 5'-phosphate oxidase Aa30R_369 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region Aa30R_374 PF00271 Helicase conserved C-terminal domain Aa30R_374 PF00270 DEAD/DEAH box helicase Aa30R_376 PF04973 Nicotinamide mononucleotide transporter Aa30R_377 PF00849 RNA pseudouridylate synthase Aa30R_383 PF13361 UvrD-like helicase C-terminal domain Aa30R_383 PF00580 UvrD/REP helicase N-terminal domain Aa30R_39 PF03918 Cytochrome C biogenesis protein Aa30R_395 PF05257 CHAP domain Aa30R_395 PF03738 Glutathionylspermidine synthase preATP-grasp Aa30R_396 PF05257 CHAP domain Aa30R_396 PF03738 Glutathionylspermidine synthase preATP-grasp Aa30R_415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Aa30R_415 PF03466 LysR substrate binding domain Aa30R_421 PF03350 Uncharacterized protein family, UPF0114 Aa30R_431 PF01765 Ribosome recycling factor Aa30R_433 PF01255 Putative undecaprenyl diphosphate synthase Aa30R_443 PF03600 Citrate transporter Aa30R_443 PF02080 TrkA-C domain Aa30R_448 PF00923 Transaldolase/Fructose-6-phosphate aldolase Aa30R_462 PF03702 Anhydro-N-acetylmuramic acid kinase Aa30R_464 PF04607 Region found in RelA / SpoT proteins Aa30R_470 PF00005 ABC transporter Aa30R_474 PF13309 HTH domain Aa30R_474 PF08348 YheO-like PAS domain Aa30R_478 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Aa30R_478 PF03466 LysR substrate binding domain Aa30R_481 PF00664 ABC transporter transmembrane region Aa30R_481 PF00005 ABC transporter Aa30R_485 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus Aa30R_485 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Aa30R_491 PF05368 NmrA-like family Aa30R_496 PF00137 ATP synthase subunit C Aa30R_499 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Aa30R_499 PF02874 ATP synthase alpha/beta family, beta-barrel domain Aa30R_499 PF00306 ATP synthase alpha/beta chain, C terminal domain Aa30R_509 PF02384 N-6 DNA Methylase Aa30R_509 PF12161 HsdM N-terminal domain Aa30R_519 PF00005 ABC transporter Aa30R_538 PF18075 FtsX extracellular domain Aa30R_538 PF02687 FtsX-like permease family Aa30R_543 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Aa30R_561 PF01250 Ribosomal protein S6 Aa30R_57 PF02152 Dihydroneopterin aldolase Aa30R_570 PF08461 Ribonuclease R winged-helix domain Aa30R_570 PF17876 Cold shock domain Aa30R_570 PF08206 Ribonuclease B OB domain Aa30R_570 PF00575 S1 RNA binding domain Aa30R_570 PF00773 RNB domain Aa30R_58 PF01464 Transglycosylase SLT domain Aa30R_58 PF00497 Bacterial extracellular solute-binding proteins, family 3 Aa30R_580 PF03695 Uncharacterised protein family (UPF0149) Aa30R_583 PF13525 Outer membrane lipoprotein Aa30R_585 PF02578 Multi-copper polyphenol oxidoreductase laccase Aa30R_592 PF00873 AcrB/AcrD/AcrF family Aa30R_607 PF04002 RadC-like JAB domain Aa30R_611 PF04002 RadC-like JAB domain Aa30R_625 PF01202 Shikimate kinase Aa30R_626 PF01761 3-dehydroquinate synthase Aa30R_63 PF00155 Aminotransferase class I and II Aa30R_636 PF00293 NUDIX domain Aa30R_641 PF10786 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) Aa30R_643 PF08780 Nucleotidyltransferase substrate binding protein like Aa30R_65 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Aa30R_65 PF16582 Middle domain of thiamine pyrophosphate Aa30R_65 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Aa30R_651 PF00106 short chain dehydrogenase Aa30R_659 PF03471 Transporter associated domain Aa30R_659 PF01595 Cyclin M transmembrane N-terminal domain Aa30R_659 PF00571 CBS domain Aa30R_66 PF00561 alpha/beta hydrolase fold Aa30R_661 PF02472 Biopolymer transport protein ExbD/TolR Aa30R_683 PF02092 Glycyl-tRNA synthetase beta subunit Aa30R_683 PF05746 DALR anticodon binding domain Aa30R_684 PF00490 Delta-aminolevulinic acid dehydratase Aa30R_689 PF01479 S4 domain Aa30R_696 PF00459 Inositol monophosphatase family Aa30R_725 PF13419 Haloacid dehalogenase-like hydrolase Aa30R_732 PF10531 SLBB domain Aa30R_751 PF00327 Ribosomal protein L30p/L7e Aa30R_757 PF00163 Ribosomal protein S4/S9 N-terminal domain Aa30R_757 PF01479 S4 domain Aa30R_782 PF00118 TCP-1/cpn60 chaperonin family Aa30R_79 PF04191 Phospholipid methyltransferase Aa30R_796 PF00156 Phosphoribosyl transferase domain Aa30R_802 PF00528 Binding-protein-dependent transport system inner membrane component Aa30R_824 PF03952 Enolase, N-terminal domain Aa30R_824 PF00113 Enolase, C-terminal TIM barrel domain Aa30R_825 PF03652 Holliday junction resolvase Aa30R_833 PF00582 Universal stress protein family Aa30R_836 PF00884 Sulfatase Aa30R_836 PF11893 Domain of unknown function (DUF3413) Aa30R_86 PF00884 Sulfatase Aa30R_862 PF09297 NADH pyrophosphatase zinc ribbon domain Aa30R_862 PF00293 NUDIX domain Aa30R_867 PF04357 TamB, inner membrane protein subunit of TAM complex Aa30R_868 PF01103 Surface antigen Aa30R_868 PF17243 POTRA domain TamA domain 1 Aa30R_870 PF01295 Adenylate cyclase, class-I Aa30R_870 PF12633 Adenylate cyclase NT domain Aa30R_885 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Aa30R_885 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Aa30R_887 PF02653 Branched-chain amino acid transport system / permease component Aa30R_889 PF00005 ABC transporter Aa30R_903 PF00106 short chain dehydrogenase Aa30R_909 PF03937 Flavinator of succinate dehydrogenase Aa30R_912 PF12390 Selenocysteine synthase N terminal Aa30R_912 PF03841 L-seryl-tRNA selenium transferase Aa30R_913 PF00009 Elongation factor Tu GTP binding domain Aa30R_913 PF03144 Elongation factor Tu domain 2 Aa30R_913 PF09106 Elongation factor SelB, winged helix Aa30R_913 PF09107 Elongation factor SelB, winged helix Aa30R_938 PF05127 Helicase Aa30R_938 PF17176 tRNA-binding domain Aa30R_938 PF13718 GNAT acetyltransferase 2 Aa30R_940 PF02559 CarD-like/TRCF domain Aa30R_940 PF00270 DEAD/DEAH box helicase Aa30R_940 PF03461 TRCF domain Aa30R_940 PF17757 UvrB interaction domain Aa30R_940 PF00271 Helicase conserved C-terminal domain Aa30R_947 PF02554 Carbon starvation protein CstA Aa30R_954 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 Aa30R_954 PF00953 Glycosyl transferase family 4 Aa30R_962 PF12327 FtsZ family, C-terminal domain Aa30R_962 PF00091 Tubulin/FtsZ family, GTPase domain Aa30R_965 PF00183 Hsp90 protein Aa30R_965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Aa30R_966 PF03960 ArsC family Aa30R_978 PF01170 Putative RNA methylase family UPF0020 Aa30R_978 PF02926 THUMP domain Aa30R_978 PF10672 S-adenosylmethionine-dependent methyltransferase Aa30R_982 PF00890 FAD binding domain Aa30R_982 PF02910 Fumarate reductase flavoprotein C-term Aa30R_988 PF01497 Periplasmic binding protein Aa30R_989 PF00149 Calcineurin-like phosphoesterase Aa30S_100 PF10124 Mu-like prophage major head subunit gpT Aa30S_1001 PF01464 Transglycosylase SLT domain Aa30S_1001 PF14718 Soluble lytic murein transglycosylase L domain Aa30S_101 PF10123 Mu-like prophage I protein Aa30S_1014 PF02801 Beta-ketoacyl synthase, C-terminal domain Aa30S_1014 PF00109 Beta-ketoacyl synthase, N-terminal domain Aa30S_102 PF05069 Phage virion morphogenesis family Aa30S_1026 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase Aa30S_1026 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase Aa30S_1043 PF00012 Hsp70 protein Aa30S_106 PF09299 Mu transposase, C-terminal Aa30S_106 PF09039 Mu DNA binding, I gamma subdomain Aa30S_106 PF02316 Mu DNA-binding domain Aa30S_106 PF02914 Bacteriophage Mu transposase Aa30S_1066 PF00575 S1 RNA binding domain Aa30S_1066 PF10150 Ribonuclease E/G family Aa30S_107 PF13693 Winged helix-turn-helix DNA-binding Aa30S_1073 PF03498 Cytolethal distending toxin A/C domain Aa30S_1078 PF01066 CDP-alcohol phosphatidyltransferase Aa30S_108 PF01381 Helix-turn-helix Aa30S_108 PF00717 Peptidase S24-like Aa30S_1084 PF06097 Bacterial protein of unknown function (DUF945) Aa30S_1089 PF13847 Methyltransferase domain Aa30S_1089 PF17827 PrmC N-terminal domain Aa30S_1090 PF00793 DAHP synthetase I family Aa30S_1096 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Aa30S_1096 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Aa30S_1096 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Aa30S_1096 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Aa30S_1099 PF00717 Peptidase S24-like Aa30S_1101 PF00478 IMP dehydrogenase / GMP reductase domain Aa30S_1101 PF00571 CBS domain Aa30S_1107 PF00528 Binding-protein-dependent transport system inner membrane component Aa30S_1108 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Aa30S_1114 PF17209 Hfq protein Aa30S_1134 PF00117 Glutamine amidotransferase class-I Aa30S_1138 PF02687 FtsX-like permease family Aa30S_1138 PF12704 MacB-like periplasmic core domain Aa30S_114 PF00403 Heavy-metal-associated domain Aa30S_1146 PF02769 AIR synthase related protein, C-terminal domain Aa30S_1146 PF00586 AIR synthase related protein, N-terminal domain Aa30S_1149 PF01113 Dihydrodipicolinate reductase, N-terminus Aa30S_1149 PF05173 Dihydrodipicolinate reductase, C-terminus Aa30S_1150 PF00111 2Fe-2S iron-sulfur cluster binding domain Aa30S_1162 PF00528 Binding-protein-dependent transport system inner membrane component Aa30S_1163 PF00528 Binding-protein-dependent transport system inner membrane component Aa30S_1163 PF14785 Maltose transport system permease protein MalF P2 domain Aa30S_1165 PF17912 MalK OB fold domain Aa30S_1165 PF00005 ABC transporter Aa30S_1178 PF01554 MatE Aa30S_1184 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain Aa30S_1184 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain Aa30S_1186 PF11974 Bacterial alpha-2-macroglobulin MG3 domain Aa30S_1186 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain Aa30S_1186 PF07703 Alpha-2-macroglobulin bait region domain Aa30S_1186 PF00207 Alpha-2-macroglobulin family Aa30S_1186 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain Aa30S_1186 PF17962 Bacterial macroglobulin domain 6 Aa30S_1186 PF01835 MG2 domain Aa30S_1189 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family Aa30S_1193 PF00455 DeoR C terminal sensor domain Aa30S_1193 PF08220 DeoR-like helix-turn-helix domain Aa30S_1198 PF02837 Glycosyl hydrolases family 2, sugar binding domain Aa30S_1198 PF16353 Domain of unknown function(DUF4981) Aa30S_1198 PF02836 Glycosyl hydrolases family 2, TIM barrel domain Aa30S_1198 PF00703 Glycosyl hydrolases family 2 Aa30S_1198 PF02929 Beta galactosidase small chain Aa30S_1200 PF00881 Nitroreductase family Aa30S_1201 PF08443 RimK-like ATP-grasp domain Aa30S_1201 PF18030 RimK PreATP-grasp domain Aa30S_1202 PF16036 Chalcone isomerase-like Aa30S_1231 PF01891 Cobalt uptake substrate-specific transmembrane region Aa30S_1247 PF00883 Cytosol aminopeptidase family, catalytic domain Aa30S_1247 PF02789 Cytosol aminopeptidase family, N-terminal domain Aa30S_125 PF02447 GntP family permease Aa30S_1252 PF00939 Sodium:sulfate symporter transmembrane region Aa30S_1266 PF13375 RnfC Barrel sandwich hybrid domain Aa30S_1266 PF10531 SLBB domain Aa30S_1266 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Aa30S_1266 PF12838 4Fe-4S dicluster domain Aa30S_1274 PF04225 Opacity-associated protein A LysM-like domain Aa30S_1274 PF01551 Peptidase family M23 Aa30S_1279 PF02872 5'-nucleotidase, C-terminal domain Aa30S_1279 PF00149 Calcineurin-like phosphoesterase Aa30S_128 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Aa30S_128 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Aa30S_1311 PF00367 phosphotransferase system, EIIB Aa30S_1311 PF02378 Phosphotransferase system, EIIC Aa30S_1311 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 Aa30S_1325 PF00576 HIUase/Transthyretin family Aa30S_134 PF07963 Prokaryotic N-terminal methylation motif Aa30S_135 PF00437 Type II/IV secretion system protein Aa30S_135 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain Aa30S_1352 PF02033 Ribosome-binding factor A Aa30S_136 PF00482 Type II secretion system (T2SS), protein F Aa30S_1366 PF00528 Binding-protein-dependent transport system inner membrane component Aa30S_1385 PF02446 4-alpha-glucanotransferase Aa30S_1393 PF01343 Peptidase family S49 Aa30S_1398 PF00849 RNA pseudouridylate synthase Aa30S_1398 PF01479 S4 domain Aa30S_1413 PF04972 BON domain Aa30S_1414 PF13580 SIS domain Aa30S_1415 PF02021 Uncharacterised protein family UPF0102 Aa30S_1416 PF04348 LppC putative lipoprotein Aa30S_1419 PF07992 Pyridine nucleotide-disulphide oxidoreductase Aa30S_1422 PF00691 OmpA family Aa30S_1422 PF05736 OprF membrane domain Aa30S_1426 PF00175 Oxidoreductase NAD-binding domain Aa30S_1426 PF00970 Oxidoreductase FAD-binding domain Aa30S_1432 PF01791 DeoC/LacD family aldolase Aa30S_1439 PF02779 Transketolase, pyrimidine binding domain Aa30S_1439 PF02780 Transketolase, C-terminal domain Aa30S_1439 PF13292 1-deoxy-D-xylulose-5-phosphate synthase Aa30S_1464 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Aa30S_1464 PF00128 Alpha amylase, catalytic domain Aa30S_1464 PF18390 Glycogen debranching enzyme C-terminal domain Aa30S_1465 PF00483 Nucleotidyl transferase Aa30S_1467 PF00343 Carbohydrate phosphorylase Aa30S_147 PF02661 Fic/DOC family Aa30S_1478 PF04310 MukB N-terminal Aa30S_1478 PF16330 MukB hinge domain Aa30S_1482 PF13276 HTH-like domain Aa30S_1482 PF00665 Integrase core domain Aa30S_1496 PF00155 Aminotransferase class I and II Aa30S_1498 PF13533 Biotin-lipoyl like Aa30S_1507 PF00593 TonB dependent receptor Aa30S_1507 PF07715 TonB-dependent Receptor Plug Domain Aa30S_1513 PF00593 TonB dependent receptor Aa30S_1516 PF00877 NlpC/P60 family Aa30S_1521 PF01435 Peptidase family M48 Aa30S_1528 PF00591 Glycosyl transferase family, a/b domain Aa30S_1528 PF02885 Glycosyl transferase family, helical bundle domain Aa30S_153 PF00289 Biotin carboxylase, N-terminal domain Aa30S_153 PF02785 Biotin carboxylase C-terminal domain Aa30S_153 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Aa30S_1537 PF00364 Biotin-requiring enzyme Aa30S_1537 PF02436 Conserved carboxylase domain Aa30S_1537 PF00682 HMGL-like Aa30S_1546 PF00317 Ribonucleotide reductase, all-alpha domain Aa30S_1546 PF02867 Ribonucleotide reductase, barrel domain Aa30S_1546 PF03477 ATP cone domain Aa30S_1553 PF02653 Branched-chain amino acid transport system / permease component Aa30S_1563 PF04386 Stringent starvation protein B Aa30S_1564 PF13417 Glutathione S-transferase, N-terminal domain Aa30S_1564 PF00043 Glutathione S-transferase, C-terminal domain Aa30S_1566 PF02597 ThiS family Aa30S_1585 PF00580 UvrD/REP helicase N-terminal domain Aa30S_1585 PF12705 PD-(D/E)XK nuclease superfamily Aa30S_1585 PF13361 UvrD-like helicase C-terminal domain Aa30S_1590 PF00313 'Cold-shock' DNA-binding domain Aa30S_1597 PF02954 Bacterial regulatory protein, Fis family Aa30S_1597 PF14532 Sigma-54 interaction domain Aa30S_1597 PF00072 Response regulator receiver domain Aa30S_1602 PF04315 Elongation factor P hydroxylase Aa30S_1610 PF00270 DEAD/DEAH box helicase Aa30S_1610 PF17191 RecG wedge domain Aa30S_1610 PF00271 Helicase conserved C-terminal domain Aa30S_1611 PF13328 HD domain Aa30S_1611 PF13291 ACT domain Aa30S_1611 PF02824 TGS domain Aa30S_1611 PF04607 Region found in RelA / SpoT proteins Aa30S_1615 PF00892 EamA-like transporter family Aa30S_1619 PF13742 OB-fold nucleic acid binding domain Aa30S_1619 PF02601 Exonuclease VII, large subunit Aa30S_1621 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Aa30S_1627 PF02470 MlaD protein Aa30S_1647 PF03212 Pertactin Aa30S_1647 PF02395 Immunoglobulin A1 protease Aa30S_1647 PF03797 Autotransporter beta-domain Aa30S_1652 PF00528 Binding-protein-dependent transport system inner membrane component Aa30S_1654 PF01168 Alanine racemase, N-terminal domain Aa30S_1658 PF00288 GHMP kinases N terminal domain Aa30S_1658 PF08544 GHMP kinases C terminal Aa30S_167 PF01790 Prolipoprotein diacylglyceryl transferase Aa30S_1678 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component Aa30S_168 PF01925 Sulfite exporter TauE/SafE Aa30S_1688 PF10410 DnaB-helicase binding domain of primase Aa30S_1688 PF01807 CHC2 zinc finger Aa30S_1688 PF08275 DNA primase catalytic core, N-terminal domain Aa30S_1688 PF08278 DNA primase DnaG DnaB-binding Aa30S_1691 PF00814 Glycoprotease family Aa30S_1694 PF00533 BRCA1 C Terminus (BRCT) domain Aa30S_1694 PF03119 NAD-dependent DNA ligase C4 zinc finger domain Aa30S_1694 PF01653 NAD-dependent DNA ligase adenylation domain Aa30S_1694 PF03120 NAD-dependent DNA ligase OB-fold domain Aa30S_1694 PF12826 Helix-hairpin-helix motif Aa30S_1702 PF13276 HTH-like domain Aa30S_1702 PF00665 Integrase core domain Aa30S_1707 PF01521 Iron-sulphur cluster biosynthesis Aa30S_1711 PF10634 Fe2+ transport protein Aa30S_1719 PF13419 Haloacid dehalogenase-like hydrolase Aa30S_1723 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold Aa30S_1723 PF00271 Helicase conserved C-terminal domain Aa30S_1723 PF04408 Helicase associated domain (HA2) Aa30S_1723 PF11898 Domain of unknown function (DUF3418) Aa30S_1723 PF00270 DEAD/DEAH box helicase Aa30S_1725 PF04284 Protein of unknown function (DUF441) Aa30S_1732 PF01979 Amidohydrolase family Aa30S_1734 PF00701 Dihydrodipicolinate synthetase family Aa30S_174 PF00294 pfkB family carbohydrate kinase Aa30S_1760 PF12169 DNA polymerase III subunits gamma and tau domain III Aa30S_1760 PF12170 DNA polymerase III tau subunit V interacting with alpha Aa30S_1763 PF01925 Sulfite exporter TauE/SafE Aa30S_1766 PF12794 Mechanosensitive ion channel inner membrane domain 1 Aa30S_1766 PF00924 Mechanosensitive ion channel Aa30S_1766 PF12795 Mechanosensitive ion channel porin domain Aa30S_1770 PF00258 Flavodoxin Aa30S_1783 PF07715 TonB-dependent Receptor Plug Domain Aa30S_1784 PF00675 Insulinase (Peptidase family M16) Aa30S_1784 PF05193 Peptidase M16 inactive domain Aa30S_1785 PF00675 Insulinase (Peptidase family M16) Aa30S_1785 PF05193 Peptidase M16 inactive domain Aa30S_1788 PF03466 LysR substrate binding domain Aa30S_1788 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Aa30S_1791 PF17761 DUF1016 N-terminal domain Aa30S_1791 PF06250 YhcG PDDEXK nuclease domain Aa30S_1794 PF01027 Inhibitor of apoptosis-promoting Bax1 Aa30S_1797 PF00005 ABC transporter Aa30S_1803 PF03733 Inner membrane component domain Aa30S_1807 PF02780 Transketolase, C-terminal domain Aa30S_1807 PF02779 Transketolase, pyrimidine binding domain Aa30S_1814 PF13286 Phosphohydrolase-associated domain Aa30S_1814 PF01966 HD domain Aa30S_1816 PF03788 LrgA family Aa30S_1818 PF00266 Aminotransferase class-V Aa30S_1820 PF01467 Cytidylyltransferase-like Aa30S_1820 PF00294 pfkB family carbohydrate kinase Aa30S_1841 PF02551 Acyl-CoA thioesterase Aa30S_1845 PF07273 Protein of unknown function (DUF1439) Aa30S_1846 PF00480 ROK family Aa30S_185 PF13018 Extended Signal Peptide of Type V secretion system Aa30S_185 PF05662 Coiled stalk of trimeric autotransporter adhesin Aa30S_185 PF03895 YadA-like membrane anchor domain Aa30S_185 PF05658 Head domain of trimeric autotransporter adhesin Aa30S_1851 PF16363 GDP-mannose 4,6 dehydratase Aa30S_1865 PF00005 ABC transporter Aa30S_1889 PF00384 Molybdopterin oxidoreductase Aa30S_1889 PF01568 Molydopterin dinucleotide binding domain Aa30S_1889 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Aa30S_1893 PF01300 Telomere recombination Aa30S_1893 PF07503 HypF finger Aa30S_1893 PF17788 HypF Kae1-like domain Aa30S_1893 PF00708 Acylphosphatase Aa30S_1900 PF00374 Nickel-dependent hydrogenase Aa30S_1900 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Aa30S_1900 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Aa30S_1902 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Aa30S_1903 PF07450 Formate hydrogenlyase maturation protein HycH Aa30S_1910 PF16078 2-oxoglutarate dehydrogenase N-terminus Aa30S_1910 PF02779 Transketolase, pyrimidine binding domain Aa30S_1910 PF16870 2-oxoglutarate dehydrogenase C-terminal Aa30S_1910 PF00676 Dehydrogenase E1 component Aa30S_1914 PF03734 L,D-transpeptidase catalytic domain Aa30S_1917 PF04403 Paraquat-inducible protein A Aa30S_1932 PF01928 CYTH domain Aa30S_195 PF03099 Biotin/lipoate A/B protein ligase family Aa30S_1959 PF07549 SecD/SecF GG Motif Aa30S_1959 PF02355 Protein export membrane protein Aa30S_1959 PF13721 SecD export protein N-terminal TM region Aa30S_1963 PF00171 Aldehyde dehydrogenase family Aa30S_1963 PF00465 Iron-containing alcohol dehydrogenase Aa30S_1968 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Aa30S_1968 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Aa30S_197 PF00768 D-alanyl-D-alanine carboxypeptidase Aa30S_197 PF07943 Penicillin-binding protein 5, C-terminal domain Aa30S_1977 PF01261 Xylose isomerase-like TIM barrel Aa30S_1980 PF00005 ABC transporter Aa30S_1980 PF03412 Peptidase C39 family Aa30S_1980 PF00664 ABC transporter transmembrane region Aa30S_1992 PF17344 Family of unknown function (DUF5374) Aa30S_1998 PF02472 Biopolymer transport protein ExbD/TolR Aa30S_2 PF02768 DNA polymerase III beta subunit, C-terminal domain Aa30S_2 PF02767 DNA polymerase III beta subunit, central domain Aa30S_2 PF00712 DNA polymerase III beta subunit, N-terminal domain Aa30S_2004 PF01654 Cytochrome bd terminal oxidase subunit I Aa30S_201 PF02590 Predicted SPOUT methyltransferase Aa30S_2019 PF07715 TonB-dependent Receptor Plug Domain Aa30S_2019 PF00593 TonB dependent receptor Aa30S_2029 PF00348 Polyprenyl synthetase Aa30S_2038 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Aa30S_2042 PF00528 Binding-protein-dependent transport system inner membrane component Aa30S_2042 PF12911 N-terminal TM domain of oligopeptide transport permease C Aa30S_2044 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Aa30S_2044 PF00005 ABC transporter Aa30S_205 PF07690 Major Facilitator Superfamily Aa30S_2055 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Aa30S_2055 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Aa30S_2059 PF02661 Fic/DOC family Aa30S_2071 PF18429 Domain of unknown function (DUF5609) Aa30S_2074 PF03023 Lipid II flippase MurJ Aa30S_2091 PF01212 Beta-eliminating lyase Aa30S_2097 PF01553 Acyltransferase Aa30S_2099 PF00892 EamA-like transporter family Aa30S_211 PF02504 Fatty acid synthesis protein Aa30S_2117 PF01926 50S ribosome-binding GTPase Aa30S_2117 PF07650 KH domain Aa30S_2122 PF00468 Ribosomal protein L34 Aa30S_221 PF01472 PUA domain Aa30S_221 PF00696 Amino acid kinase family Aa30S_224 PF06738 Putative threonine/serine exporter Aa30S_225 PF06738 Putative threonine/serine exporter Aa30S_225 PF12821 Threonine/Serine exporter, ThrE Aa30S_228 PF07509 Protein of unknown function (DUF1523) Aa30S_230 PF09115 DNA polymerase III, delta subunit, C terminal Aa30S_249 PF12804 MobA-like NTP transferase domain Aa30S_252 PF00294 pfkB family carbohydrate kinase Aa30S_26 PF00665 Integrase core domain Aa30S_260 PF03946 Ribosomal protein L11, N-terminal domain Aa30S_260 PF00298 Ribosomal protein L11, RNA binding domain Aa30S_279 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Aa30S_279 PF03466 LysR substrate binding domain Aa30S_288 PF00654 Voltage gated chloride channel Aa30S_29 PF03918 Cytochrome C biogenesis protein Aa30S_314 PF04393 Protein of unknown function (DUF535) Aa30S_337 PF01078 Magnesium chelatase, subunit ChlI Aa30S_337 PF13335 Magnesium chelatase, subunit ChlI C-terminal Aa30S_338 PF04748 Divergent polysaccharide deacetylase Aa30S_34 PF13247 4Fe-4S dicluster domain Aa30S_350 PF03222 Tryptophan/tyrosine permease family Aa30S_355 PF02881 SRP54-type protein, helical bundle domain Aa30S_355 PF00448 SRP54-type protein, GTPase domain Aa30S_359 PF03613 PTS system mannose/fructose/sorbose family IID component Aa30S_366 PF00535 Glycosyl transferase family 2 Aa30S_386 PF01367 5'-3' exonuclease, C-terminal SAM fold Aa30S_386 PF01612 3'-5' exonuclease Aa30S_386 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain Aa30S_386 PF00476 DNA polymerase family A Aa30S_40 PF03918 Cytochrome C biogenesis protein Aa30S_402 PF03927 NapD protein Aa30S_407 PF00140 Sigma-70 factor, region 1.2 Aa30S_407 PF04542 Sigma-70 region 2 Aa30S_407 PF04545 Sigma-70, region 4 Aa30S_422 PF17364 Family of unknown function (DUF5389) Aa30S_425 PF07715 TonB-dependent Receptor Plug Domain Aa30S_425 PF00593 TonB dependent receptor Aa30S_426 PF06472 ABC transporter transmembrane region 2 Aa30S_426 PF00005 ABC transporter Aa30S_427 PF02080 TrkA-C domain Aa30S_427 PF06826 Predicted Permease Membrane Region Aa30S_439 PF00132 Bacterial transferase hexapeptide (six repeats) Aa30S_439 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 Aa30S_446 PF01797 Transposase IS200 like Aa30S_453 PF00005 ABC transporter Aa30S_453 PF12848 ABC transporter Aa30S_454 PF01914 MarC family integral membrane protein Aa30S_457 PF00589 Phage integrase family Aa30S_457 PF13356 Arm DNA-binding domain Aa30S_46 PF03379 CcmB protein Aa30S_462 PF01380 SIS domain Aa30S_471 PF02635 DsrE/DsrF-like family Aa30S_472 PF02635 DsrE/DsrF-like family Aa30S_479 PF00005 ABC transporter Aa30S_479 PF00664 ABC transporter transmembrane region Aa30S_489 PF13932 GidA associated domain Aa30S_492 PF02527 rRNA small subunit methyltransferase G Aa30S_497 PF00213 ATP synthase delta (OSCP) subunit Aa30S_499 PF00231 ATP synthase Aa30S_500 PF02874 ATP synthase alpha/beta family, beta-barrel domain Aa30S_500 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Aa30S_504 PF12008 Type I restriction and modification enzyme - subunit R C terminal Aa30S_504 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) Aa30S_504 PF18766 SWI2/SNF2 ATPase Aa30S_51 PF01515 Phosphate acetyl/butaryl transferase Aa30S_51 PF03949 Malic enzyme, NAD binding domain Aa30S_51 PF00390 Malic enzyme, N-terminal domain Aa30S_516 PF00155 Aminotransferase class I and II Aa30S_519 PF13407 Periplasmic binding protein domain Aa30S_524 PF00665 Integrase core domain Aa30S_524 PF13276 HTH-like domain Aa30S_525 PF13091 PLD-like domain Aa30S_531 PF04932 O-Antigen ligase Aa30S_532 PF12146 Serine aminopeptidase, S33 Aa30S_534 PF00205 Thiamine pyrophosphate enzyme, central domain Aa30S_534 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Aa30S_535 PF00291 Pyridoxal-phosphate dependent enzyme Aa30S_535 PF00585 C-terminal regulatory domain of Threonine dehydratase Aa30S_54 PF04228 Putative neutral zinc metallopeptidase Aa30S_543 PF02542 YgbB family Aa30S_55 PF01476 LysM domain Aa30S_557 PF00664 ABC transporter transmembrane region Aa30S_557 PF00005 ABC transporter Aa30S_568 PF08032 RNA 2'-O ribose methyltransferase substrate binding Aa30S_568 PF00588 SpoU rRNA Methylase family Aa30S_570 PF06723 MreB/Mbl protein Aa30S_587 PF02594 Uncharacterised ACR, YggU family COG1872 Aa30S_594 PF05036 Sporulation related domain Aa30S_595 PF18074 Primosomal protein N C-terminal domain Aa30S_595 PF00270 DEAD/DEAH box helicase Aa30S_595 PF00271 Helicase conserved C-terminal domain Aa30S_595 PF17764 3′ DNA-binding domain (3′BD) Aa30S_595 PF18319 PriA DNA helicase Cys-rich region (CRR) domain Aa30S_596 PF09612 Bacterial protein of unknown function (HtrL_YibB) Aa30S_612 PF00692 dUTPase Aa30S_617 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ Aa30S_639 PF08264 Anticodon-binding domain of tRNA Aa30S_639 PF00133 tRNA synthetases class I (I, L, M and V) Aa30S_639 PF13603 Leucyl-tRNA synthetase, Domain 2 Aa30S_643 PF00149 Calcineurin-like phosphoesterase Aa30S_645 PF09312 SurA N-terminal domain Aa30S_645 PF00639 PPIC-type PPIASE domain Aa30S_668 PF02661 Fic/DOC family Aa30S_668 PF17841 BID domain of Bartonella effector protein (Bep) Aa30S_672 PF01568 Molydopterin dinucleotide binding domain Aa30S_672 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Aa30S_672 PF00384 Molybdopterin oxidoreductase Aa30S_676 PF00037 4Fe-4S binding domain Aa30S_676 PF12838 4Fe-4S dicluster domain Aa30S_696 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain Aa30S_696 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain Aa30S_719 PF00550 Phosphopantetheine attachment site Aa30S_73 PF04055 Radical SAM superfamily Aa30S_735 PF00156 Phosphoribosyl transferase domain Aa30S_738 PF05525 Branched-chain amino acid transport protein Aa30S_744 PF00281 Ribosomal protein L5 Aa30S_744 PF00673 ribosomal L5P family C-terminus Aa30S_745 PF00253 Ribosomal protein S14p/S29e Aa30S_755 PF00411 Ribosomal protein S11 Aa30S_762 PF00149 Calcineurin-like phosphoesterase Aa30S_764 PF01206 Sulfurtransferase TusA Aa30S_78 PF09976 Tetratricopeptide repeat-like domain Aa30S_786 PF04607 Region found in RelA / SpoT proteins Aa30S_786 PF02824 TGS domain Aa30S_786 PF13291 ACT domain Aa30S_786 PF13328 HD domain Aa30S_798 PF01207 Dihydrouridine synthase (Dus) Aa30S_80 PF00308 Bacterial dnaA protein Aa30S_800 PF00005 ABC transporter Aa30S_807 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain Aa30S_807 PF01464 Transglycosylase SLT domain Aa30S_813 PF03116 NQR2, RnfD, RnfE family Aa30S_829 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Aa30S_829 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Aa30S_829 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Aa30S_829 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Aa30S_83 PF13145 PPIC-type PPIASE domain Aa30S_831 PF01411 tRNA synthetases class II (A) Aa30S_831 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Aa30S_831 PF02272 DHHA1 domain Aa30S_843 PF03631 Virulence factor BrkB Aa30S_846 PF05872 Bacterial protein of unknown function (DUF853) Aa30S_849 PF00248 Aldo/keto reductase family Aa30S_87 PF00574 Clp protease Aa30S_887 PF02653 Branched-chain amino acid transport system / permease component Aa30S_889 PF13407 Periplasmic binding protein domain Aa30S_892 PF00204 DNA gyrase B Aa30S_892 PF00986 DNA gyrase B subunit, carboxyl terminus Aa30S_892 PF01751 Toprim domain Aa30S_892 PF18053 DNA gyrase B subunit insert domain Aa30S_892 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Aa30S_899 PF04453 LPS transport system D Aa30S_899 PF03968 OstA-like protein Aa30S_9 PF00390 Malic enzyme, N-terminal domain Aa30S_9 PF03949 Malic enzyme, NAD binding domain Aa30S_906 PF03873 Anti sigma-E protein RseA, C-terminal domain Aa30S_906 PF03872 Anti sigma-E protein RseA, N-terminal domain Aa30S_927 PF00437 Type II/IV secretion system protein Aa30S_942 PF00497 Bacterial extracellular solute-binding proteins, family 3 Aa30S_944 PF00528 Binding-protein-dependent transport system inner membrane component Aa30S_955 PF01098 Cell cycle protein Aa30S_957 PF08245 Mur ligase middle domain Aa30S_957 PF02875 Mur ligase family, glutamate ligase domain Aa30S_957 PF01225 Mur ligase family, catalytic domain Aa30S_962 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase Aa30S_963 PF01817 Chorismate mutase type II Aa30S_963 PF00800 Prephenate dehydratase Aa30S_968 PF00293 NUDIX domain Aa30S_97 PF08873 Domain of unknown function (DUF1834) Aa30S_975 PF13635 Domain of unknown function (DUF4143) Aa30S_975 PF13173 AAA domain Aa30S_978 PF02313 Fumarate reductase subunit D Aa30S_98 PF07030 Protein of unknown function (DUF1320) Aa30S_994 PF13356 Arm DNA-binding domain Aa30S_994 PF00589 Phage integrase family Aa31R_1 PF08299 Bacterial dnaA protein helix-turn-helix Aa31R_1 PF11638 DnaA N-terminal domain Aa31R_1 PF00308 Bacterial dnaA protein Aa31R_1000 PF05430 S-adenosyl-L-methionine-dependent methyltransferase Aa31R_1000 PF01266 FAD dependent oxidoreductase Aa31R_1002 PF00072 Response regulator receiver domain Aa31R_1002 PF18415 Histidine kinase receptor ArcB trans-membrane domain Aa31R_1002 PF00989 PAS fold Aa31R_1002 PF01627 Hpt domain Aa31R_1002 PF00512 His Kinase A (phospho-acceptor) domain Aa31R_1002 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Aa31R_1003 PF02653 Branched-chain amino acid transport system / permease component Aa31R_1004 PF00005 ABC transporter Aa31R_1015 PF04223 Citrate lyase, alpha subunit (CitF) Aa31R_1017 PF06857 Malonate decarboxylase delta subunit (MdcD) Aa31R_102 PF02447 GntP family permease Aa31R_1026 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain Aa31R_1026 PF00728 Glycosyl hydrolase family 20, catalytic domain Aa31R_1026 PF02838 Glycosyl hydrolase family 20, domain 2 Aa31R_1026 PF03173 Putative carbohydrate binding domain Aa31R_1047 PF07690 Major Facilitator Superfamily Aa31R_1054 PF10150 Ribonuclease E/G family Aa31R_1054 PF00575 S1 RNA binding domain Aa31R_106 PF00270 DEAD/DEAH box helicase Aa31R_106 PF03880 DbpA RNA binding domain Aa31R_106 PF00271 Helicase conserved C-terminal domain Aa31R_1062 PF03372 Endonuclease/Exonuclease/phosphatase family Aa31R_1077 PF13847 Methyltransferase domain Aa31R_1077 PF17827 PrmC N-terminal domain Aa31R_112 PF00437 Type II/IV secretion system protein Aa31R_112 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain Aa31R_1129 PF00772 DnaB-like helicase N terminal domain Aa31R_1129 PF03796 DnaB-like helicase C terminal domain Aa31R_1130 PF01168 Alanine racemase, N-terminal domain Aa31R_1130 PF00842 Alanine racemase, C-terminal domain Aa31R_1143 PF03477 ATP cone domain Aa31R_1143 PF02867 Ribonucleotide reductase, barrel domain Aa31R_1143 PF00317 Ribonucleotide reductase, all-alpha domain Aa31R_1157 PF00899 ThiF family Aa31R_1168 PF01118 Semialdehyde dehydrogenase, NAD binding domain Aa31R_1174 PF00207 Alpha-2-macroglobulin family Aa31R_1174 PF07703 Alpha-2-macroglobulin bait region domain Aa31R_1174 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain Aa31R_1174 PF01835 MG2 domain Aa31R_1174 PF11974 Bacterial alpha-2-macroglobulin MG3 domain Aa31R_1174 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain Aa31R_1174 PF17962 Bacterial macroglobulin domain 6 Aa31R_1175 PF03601 Conserved hypothetical protein 698 Aa31R_1178 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Aa31R_1187 PF00462 Glutaredoxin Aa31R_1190 PF05728 Uncharacterised protein family (UPF0227) Aa31R_1197 PF10458 Valyl tRNA synthetase tRNA binding arm Aa31R_1197 PF00133 tRNA synthetases class I (I, L, M and V) Aa31R_1197 PF08264 Anticodon-binding domain of tRNA Aa31R_1201 PF07804 HipA-like C-terminal domain Aa31R_1201 PF13657 HipA N-terminal domain Aa31R_1205 PF00210 Ferritin-like domain Aa31R_1222 PF00005 ABC transporter Aa31R_1224 PF01924 Hydrogenase formation hypA family Aa31R_1228 PF09299 Mu transposase, C-terminal Aa31R_1228 PF02316 Mu DNA-binding domain Aa31R_1228 PF09039 Mu DNA binding, I gamma subdomain Aa31R_1228 PF02914 Bacteriophage Mu transposase Aa31R_1236 PF00883 Cytosol aminopeptidase family, catalytic domain Aa31R_1236 PF02789 Cytosol aminopeptidase family, N-terminal domain Aa31R_1244 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Aa31R_1244 PF01872 RibD C-terminal domain Aa31R_1250 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain Aa31R_1250 PF00056 lactate/malate dehydrogenase, NAD binding domain Aa31R_1256 PF03116 NQR2, RnfD, RnfE family Aa31R_1265 PF01032 FecCD transport family Aa31R_1268 PF02872 5'-nucleotidase, C-terminal domain Aa31R_1268 PF00149 Calcineurin-like phosphoesterase Aa31R_1283 PF01370 NAD dependent epimerase/dehydratase family Aa31R_1294 PF06968 Biotin and Thiamin Synthesis associated domain Aa31R_1294 PF04055 Radical SAM superfamily Aa31R_1297 PF18381 YcaO cyclodehydratase C-terminal domain Aa31R_1297 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding Aa31R_1301 PF00367 phosphotransferase system, EIIB Aa31R_1301 PF02378 Phosphotransferase system, EIIC Aa31R_1301 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 Aa31R_1304 PF01488 Shikimate / quinate 5-dehydrogenase Aa31R_1304 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain Aa31R_1304 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain Aa31R_1305 PF01047 MarR family Aa31R_1305 PF00480 ROK family Aa31R_1308 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Aa31R_1312 PF11734 TilS substrate C-terminal domain Aa31R_1312 PF09179 TilS substrate binding domain Aa31R_1312 PF01171 PP-loop family Aa31R_1338 PF01555 DNA methylase Aa31R_1338 PF18273 Type III R-M EcoP15I C-terminal domain Aa31R_1347 PF01262 Alanine dehydrogenase/PNT, C-terminal domain Aa31R_1347 PF05222 Alanine dehydrogenase/PNT, N-terminal domain Aa31R_1347 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch Aa31R_1352 PF02769 AIR synthase related protein, C-terminal domain Aa31R_1352 PF00586 AIR synthase related protein, N-terminal domain Aa31R_1358 PF01541 GIY-YIG catalytic domain Aa31R_1358 PF02151 UvrB/uvrC motif Aa31R_1358 PF08459 UvrC Helix-hairpin-helix N-terminal Aa31R_1363 PF13567 Domain of unknown function (DUF4131) Aa31R_1363 PF00753 Metallo-beta-lactamase superfamily Aa31R_1363 PF03772 Competence protein Aa31R_1365 PF12627 Probable RNA and SrmB- binding site of polymerase A Aa31R_1365 PF12626 Polymerase A arginine-rich C-terminus Aa31R_1365 PF01743 Poly A polymerase head domain Aa31R_1371 PF04217 Protein of unknown function, DUF412 Aa31R_1376 PF00196 Bacterial regulatory proteins, luxR family Aa31R_1376 PF17874 MalT-like TPR region Aa31R_1383 PF02153 Prephenate dehydrogenase Aa31R_1383 PF01817 Chorismate mutase type II Aa31R_1410 PF08496 Peptidase family S49 N-terminal Aa31R_1410 PF01343 Peptidase family S49 Aa31R_1413 PF02824 TGS domain Aa31R_1413 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Aa31R_1413 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Aa31R_1413 PF03129 Anticodon binding domain Aa31R_1421 PF01791 DeoC/LacD family aldolase Aa31R_1422 PF08013 Tagatose 6 phosphate kinase Aa31R_1424 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Aa31R_1425 PF03611 PTS system sugar-specific permease component Aa31R_1430 PF02609 Exonuclease VII small subunit Aa31R_1449 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain Aa31R_1449 PF00749 tRNA synthetases class I (E and Q), catalytic domain Aa31R_1453 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Aa31R_1453 PF18390 Glycogen debranching enzyme C-terminal domain Aa31R_1453 PF00128 Alpha amylase, catalytic domain Aa31R_1454 PF00483 Nucleotidyl transferase Aa31R_1466 PF16330 MukB hinge domain Aa31R_1466 PF04310 MukB N-terminal Aa31R_1471 PF13276 HTH-like domain Aa31R_1471 PF00665 Integrase core domain Aa31R_1481 PF01396 Topoisomerase DNA binding C4 zinc finger Aa31R_1481 PF08272 Topoisomerase I zinc-ribbon-like Aa31R_1481 PF01131 DNA topoisomerase Aa31R_1481 PF01751 Toprim domain Aa31R_1487 PF13533 Biotin-lipoyl like Aa31R_1488 PF00005 ABC transporter Aa31R_1491 PF01032 FecCD transport family Aa31R_1492 PF00005 ABC transporter Aa31R_1498 PF00005 ABC transporter Aa31R_1499 PF01032 FecCD transport family Aa31R_1507 PF00216 Bacterial DNA-binding protein Aa31R_151 PF13407 Periplasmic binding protein domain Aa31R_1515 PF00425 chorismate binding enzyme Aa31R_1515 PF04715 Anthranilate synthase component I, N terminal region Aa31R_1516 PF00117 Glutamine amidotransferase class-I Aa31R_1526 PF04277 Oxaloacetate decarboxylase, gamma chain Aa31R_1531 PF07715 TonB-dependent Receptor Plug Domain Aa31R_1531 PF00593 TonB dependent receptor Aa31R_1539 PF00224 Pyruvate kinase, barrel domain Aa31R_1539 PF02887 Pyruvate kinase, alpha/beta domain Aa31R_1541 PF01791 DeoC/LacD family aldolase Aa31R_1549 PF04198 Putative sugar-binding domain Aa31R_1556 PF02391 MoaE protein Aa31R_1564 PF03264 NapC/NirT cytochrome c family, N-terminal region Aa31R_1567 PF00939 Sodium:sulfate symporter transmembrane region Aa31R_1579 PF13654 AAA domain Aa31R_1579 PF05362 Lon protease (S16) C-terminal proteolytic domain Aa31R_1582 PF03701 Uncharacterised protein family (UPF0181) Aa31R_1585 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) Aa31R_159 PF00589 Phage integrase family Aa31R_1598 PF01177 Asp/Glu/Hydantoin racemase Aa31R_1601 PF02824 TGS domain Aa31R_1601 PF04607 Region found in RelA / SpoT proteins Aa31R_1601 PF13328 HD domain Aa31R_1601 PF13291 ACT domain Aa31R_1628 PF04175 Protein of unknown function (DUF406) Aa31R_1634 PF13276 HTH-like domain Aa31R_1634 PF00665 Integrase core domain Aa31R_1637 PF03212 Pertactin Aa31R_1637 PF03797 Autotransporter beta-domain Aa31R_1637 PF02395 Immunoglobulin A1 protease Aa31R_1644 PF01168 Alanine racemase, N-terminal domain Aa31R_1662 PF01497 Periplasmic binding protein Aa31R_1665 PF00106 short chain dehydrogenase Aa31R_1668 PF03480 Bacterial extracellular solute-binding protein, family 7 Aa31R_1676 PF01740 STAS domain Aa31R_1676 PF00916 Sulfate permease family Aa31R_1679 PF01807 CHC2 zinc finger Aa31R_1679 PF08278 DNA primase DnaG DnaB-binding Aa31R_1679 PF10410 DnaB-helicase binding domain of primase Aa31R_1679 PF08275 DNA primase catalytic core, N-terminal domain Aa31R_17 PF01381 Helix-turn-helix Aa31R_1700 PF00912 Transglycosylase Aa31R_1700 PF14814 Bifunctional transglycosylase second domain Aa31R_1700 PF00905 Penicillin binding protein transpeptidase domain Aa31R_1706 PF12704 MacB-like periplasmic core domain Aa31R_1706 PF02687 FtsX-like permease family Aa31R_1706 PF00005 ABC transporter Aa31R_1711 PF01609 Transposase DDE domain Aa31R_1714 PF04241 Protein of unknown function (DUF423) Aa31R_1726 PF00480 ROK family Aa31R_1730 PF01344 Kelch motif Aa31R_1733 PF00271 Helicase conserved C-terminal domain Aa31R_1733 PF04851 Type III restriction enzyme, res subunit Aa31R_1733 PF17757 UvrB interaction domain Aa31R_1733 PF12344 Ultra-violet resistance protein B Aa31R_1733 PF02151 UvrB/uvrC motif Aa31R_1748 PF00535 Glycosyl transferase family 2 Aa31R_1752 PF03279 Bacterial lipid A biosynthesis acyltransferase Aa31R_1755 PF01264 Chorismate synthase Aa31R_1759 PF00561 alpha/beta hydrolase fold Aa31R_1769 PF00575 S1 RNA binding domain Aa31R_1770 PF02224 Cytidylate kinase Aa31R_1775 PF03591 AzlC protein Aa31R_1780 PF00271 Helicase conserved C-terminal domain Aa31R_1780 PF12137 RNA polymerase recycling family C-terminal Aa31R_1780 PF00176 SNF2 family N-terminal domain Aa31R_1780 PF18337 RapA N-terminal Tudor like domain Aa31R_1780 PF18339 RapA N-terminal Tudor like domain 1 Aa31R_1789 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) Aa31R_179 PF01406 tRNA synthetases class I (C) catalytic domain Aa31R_179 PF09190 DALR domain Aa31R_1801 PF16326 ABC transporter C-terminal domain Aa31R_1801 PF12848 ABC transporter Aa31R_1801 PF00005 ABC transporter Aa31R_1802 PF13286 Phosphohydrolase-associated domain Aa31R_1802 PF01966 HD domain Aa31R_1818 PF00034 Cytochrome c Aa31R_1818 PF14376 Haem-binding domain Aa31R_1818 PF03150 Di-haem cytochrome c peroxidase Aa31R_1820 PF00501 AMP-binding enzyme Aa31R_1820 PF13193 AMP-binding enzyme C-terminal domain Aa31R_1827 PF00005 ABC transporter Aa31R_1827 PF00664 ABC transporter transmembrane region Aa31R_183 PF00768 D-alanyl-D-alanine carboxypeptidase Aa31R_183 PF07943 Penicillin-binding protein 5, C-terminal domain Aa31R_1836 PF00925 GTP cyclohydrolase II Aa31R_1854 PF01061 ABC-2 type transporter Aa31R_1858 PF16363 GDP-mannose 4,6 dehydratase Aa31R_1860 PF00535 Glycosyl transferase family 2 Aa31R_1868 PF02698 DUF218 domain Aa31R_1869 PF01068 ATP dependent DNA ligase domain Aa31R_1869 PF14743 DNA ligase OB-like domain Aa31R_1871 PF02447 GntP family permease Aa31R_1881 PF17788 HypF Kae1-like domain Aa31R_1881 PF07503 HypF finger Aa31R_1881 PF00708 Acylphosphatase Aa31R_1881 PF01300 Telomere recombination Aa31R_1883 PF00361 Proton-conducting membrane transporter Aa31R_1885 PF00361 Proton-conducting membrane transporter Aa31R_1885 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Aa31R_1889 PF12838 4Fe-4S dicluster domain Aa31R_1892 PF01750 Hydrogenase maturation protease Aa31R_1893 PF01568 Molydopterin dinucleotide binding domain Aa31R_1893 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Aa31R_1893 PF00384 Molybdopterin oxidoreductase Aa31R_1894 PF00384 Molybdopterin oxidoreductase Aa31R_1894 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Aa31R_1894 PF01568 Molydopterin dinucleotide binding domain Aa31R_1896 PF00549 CoA-ligase Aa31R_1896 PF08442 ATP-grasp domain Aa31R_1911 PF00528 Binding-protein-dependent transport system inner membrane component Aa31R_1912 PF13416 Bacterial extracellular solute-binding protein Aa31R_1924 PF08239 Bacterial SH3 domain Aa31R_1925 PF01966 HD domain Aa31R_1925 PF01743 Poly A polymerase head domain Aa31R_1925 PF12627 Probable RNA and SrmB- binding site of polymerase A Aa31R_193 PF00550 Phosphopantetheine attachment site Aa31R_1936 PF00075 RNase H Aa31R_1937 PF00929 Exonuclease Aa31R_1949 PF07549 SecD/SecF GG Motif Aa31R_1949 PF02355 Protein export membrane protein Aa31R_1954 PF00005 ABC transporter Aa31R_1957 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Aa31R_1957 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Aa31R_1963 PF00294 pfkB family carbohydrate kinase Aa31R_1965 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Aa31R_1965 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Aa31R_1965 PF00205 Thiamine pyrophosphate enzyme, central domain Aa31R_1967 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Aa31R_1967 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Aa31R_1976 PF00367 phosphotransferase system, EIIB Aa31R_1976 PF02378 Phosphotransferase system, EIIC Aa31R_1977 PF05175 Methyltransferase small domain Aa31R_1977 PF08468 Methyltransferase small domain N-terminal Aa31R_198 PF01783 Ribosomal L32p protein family Aa31R_1984 PF00691 OmpA family Aa31R_1985 PF07676 WD40-like Beta Propeller Repeat Aa31R_1985 PF04052 TolB amino-terminal domain Aa31R_2000 PF00293 NUDIX domain Aa31R_2008 PF00593 TonB dependent receptor Aa31R_2008 PF07715 TonB-dependent Receptor Plug Domain Aa31R_2010 PF00929 Exonuclease Aa31R_2011 PF03553 Na+/H+ antiporter family Aa31R_2011 PF13726 Na+-H+ antiporter family Aa31R_2013 PF04055 Radical SAM superfamily Aa31R_2013 PF01938 TRAM domain Aa31R_2013 PF00919 Uncharacterized protein family UPF0004 Aa31R_2015 PF01494 FAD binding domain Aa31R_2021 PF00892 EamA-like transporter family Aa31R_2035 PF03641 Possible lysine decarboxylase Aa31R_2040 PF00849 RNA pseudouridylate synthase Aa31R_2040 PF01479 S4 domain Aa31R_2043 PF01053 Cys/Met metabolism PLP-dependent enzyme Aa31R_2044 PF03135 CagE, TrbE, VirB family, component of type IV transporter system Aa31R_2052 PF02875 Mur ligase family, glutamate ligase domain Aa31R_2052 PF08245 Mur ligase middle domain Aa31R_2052 PF01225 Mur ligase family, catalytic domain Aa31R_2058 PF18429 Domain of unknown function (DUF5609) Aa31R_2064 PF08264 Anticodon-binding domain of tRNA Aa31R_2064 PF00133 tRNA synthetases class I (I, L, M and V) Aa31R_2064 PF06827 Zinc finger found in FPG and IleRS Aa31R_2074 PF08525 Opacity-associated protein A N-terminal motif Aa31R_2074 PF04225 Opacity-associated protein A LysM-like domain Aa31R_2076 PF09285 Elongation factor P, C-terminal Aa31R_2076 PF08207 Elongation factor P (EF-P) KOW-like domain Aa31R_2076 PF01132 Elongation factor P (EF-P) OB domain Aa31R_2078 PF01212 Beta-eliminating lyase Aa31R_2080 PF03222 Tryptophan/tyrosine permease family Aa31R_2085 PF07732 Multicopper oxidase Aa31R_2086 PF00892 EamA-like transporter family Aa31R_2093 PF05958 tRNA (Uracil-5-)-methyltransferase Aa31R_21 PF01555 DNA methylase Aa31R_215 PF01026 TatD related DNase Aa31R_216 PF09115 DNA polymerase III, delta subunit, C terminal Aa31R_217 PF02223 Thymidylate kinase Aa31R_218 PF02618 YceG-like family Aa31R_219 PF00543 Nitrogen regulatory protein P-II Aa31R_240 PF02525 Flavodoxin-like fold Aa31R_26 PF00665 Integrase core domain Aa31R_261 PF00573 Ribosomal protein L4/L1 family Aa31R_265 PF01144 Coenzyme A transferase Aa31R_275 PF01207 Dihydrouridine synthase (Dus) Aa31R_276 PF03590 Aspartate-ammonia ligase Aa31R_277 PF01037 Lrp/AsnC ligand binding domain Aa31R_277 PF13404 AsnC-type helix-turn-helix domain Aa31R_279 PF01594 AI-2E family transporter Aa31R_297 PF03180 NLPA lipoprotein Aa31R_327 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Aa31R_327 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Aa31R_327 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Aa31R_327 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Aa31R_334 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) Aa31R_349 PF01048 Phosphorylase superfamily Aa31R_35 PF02335 Cytochrome c552 Aa31R_381 PF01075 Glycosyltransferase family 9 (heptosyltransferase) Aa31R_386 PF12838 4Fe-4S dicluster domain Aa31R_386 PF12800 4Fe-4S binding domain Aa31R_393 PF00140 Sigma-70 factor, region 1.2 Aa31R_393 PF04545 Sigma-70, region 4 Aa31R_393 PF04542 Sigma-70 region 2 Aa31R_411 PF08220 DeoR-like helix-turn-helix domain Aa31R_411 PF00455 DeoR C terminal sensor domain Aa31R_419 PF01255 Putative undecaprenyl diphosphate synthase Aa31R_42 PF03100 CcmE Aa31R_424 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD Aa31R_424 PF00132 Bacterial transferase hexapeptide (six repeats) Aa31R_425 PF07977 FabA-like domain Aa31R_429 PF02080 TrkA-C domain Aa31R_429 PF03600 Citrate transporter Aa31R_439 PF12848 ABC transporter Aa31R_439 PF00005 ABC transporter Aa31R_449 PF03702 Anhydro-N-acetylmuramic acid kinase Aa31R_450 PF01380 SIS domain Aa31R_462 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Aa31R_462 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase Aa31R_467 PF00005 ABC transporter Aa31R_467 PF00664 ABC transporter transmembrane region Aa31R_468 PF00664 ABC transporter transmembrane region Aa31R_468 PF00005 ABC transporter Aa31R_469 PF03605 Anaerobic c4-dicarboxylate membrane transporter Aa31R_47 PF07690 Major Facilitator Superfamily Aa31R_470 PF00581 Rhodanese-like domain Aa31R_498 PF03609 PTS system sorbose-specific iic component Aa31R_499 PF03830 PTS system sorbose subfamily IIB component Aa31R_499 PF03610 PTS system fructose IIA component Aa31R_503 PF03553 Na+/H+ antiporter family Aa31R_504 PF00155 Aminotransferase class I and II Aa31R_505 PF02653 Branched-chain amino acid transport system / permease component Aa31R_51 PF02777 Iron/manganese superoxide dismutases, C-terminal domain Aa31R_51 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain Aa31R_510 PF13356 Arm DNA-binding domain Aa31R_510 PF00589 Phage integrase family Aa31R_513 PF13091 PLD-like domain Aa31R_522 PF00205 Thiamine pyrophosphate enzyme, central domain Aa31R_522 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Aa31R_523 PF00585 C-terminal regulatory domain of Threonine dehydratase Aa31R_523 PF00291 Pyridoxal-phosphate dependent enzyme Aa31R_524 PF00291 Pyridoxal-phosphate dependent enzyme Aa31R_524 PF00585 C-terminal regulatory domain of Threonine dehydratase Aa31R_533 PF01142 tRNA pseudouridine synthase D (TruD) Aa31R_552 PF01281 Ribosomal protein L9, N-terminal domain Aa31R_552 PF03948 Ribosomal protein L9, C-terminal domain Aa31R_572 PF00849 RNA pseudouridylate synthase Aa31R_572 PF01479 S4 domain Aa31R_577 PF02325 YGGT family Aa31R_579 PF13649 Methyltransferase domain Aa31R_603 PF06794 Uncharacterised protein family (UPF0270) Aa31R_61 PF00392 Bacterial regulatory proteins, gntR family Aa31R_61 PF07840 FadR C-terminal domain Aa31R_615 PF02086 D12 class N6 adenine-specific DNA methyltransferase Aa31R_627 PF14840 Processivity clamp loader gamma complex DNA pol III C-term Aa31R_627 PF06144 DNA polymerase III, delta subunit Aa31R_634 PF00398 Ribosomal RNA adenine dimethylase Aa31R_635 PF00639 PPIC-type PPIASE domain Aa31R_635 PF09312 SurA N-terminal domain Aa31R_638 PF04356 Protein of unknown function (DUF489) Aa31R_64 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Aa31R_64 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Aa31R_64 PF16582 Middle domain of thiamine pyrophosphate Aa31R_643 PF08240 Alcohol dehydrogenase GroES-like domain Aa31R_643 PF00107 Zinc-binding dehydrogenase Aa31R_652 PF03544 Gram-negative bacterial TonB protein C-terminal Aa31R_657 PF02661 Fic/DOC family Aa31R_657 PF17841 BID domain of Bartonella effector protein (Bep) Aa31R_673 PF05746 DALR anticodon binding domain Aa31R_673 PF02092 Glycyl-tRNA synthetase beta subunit Aa31R_680 PF13419 Haloacid dehalogenase-like hydrolase Aa31R_684 PF03169 OPT oligopeptide transporter protein Aa31R_687 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain Aa31R_687 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain Aa31R_719 PF00586 AIR synthase related protein, N-terminal domain Aa31R_719 PF02769 AIR synthase related protein, C-terminal domain Aa31R_72 PF04055 Radical SAM superfamily Aa31R_723 PF01118 Semialdehyde dehydrogenase, NAD binding domain Aa31R_723 PF02774 Semialdehyde dehydrogenase, dimerisation domain Aa31R_729 PF05525 Branched-chain amino acid transport protein Aa31R_748 PF01000 RNA polymerase Rpb3/RpoA insert domain Aa31R_748 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain Aa31R_748 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain Aa31R_75 PF04551 GcpE protein Aa31R_751 PF01797 Transposase IS200 like Aa31R_752 PF03222 Tryptophan/tyrosine permease family Aa31R_754 PF01467 Cytidylyltransferase-like Aa31R_754 PF13521 AAA domain Aa31R_769 PF00166 Chaperonin 10 Kd subunit Aa31R_772 PF00665 Integrase core domain Aa31R_772 PF13276 HTH-like domain Aa31R_788 PF00005 ABC transporter Aa31R_80 PF00860 Permease family Aa31R_819 PF01411 tRNA synthetases class II (A) Aa31R_819 PF02272 DHHA1 domain Aa31R_819 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Aa31R_825 PF04245 37-kD nucleoid-associated bacterial protein Aa31R_83 PF04262 Glutamate-cysteine ligase Aa31R_83 PF02655 ATP-grasp domain Aa31R_83 PF18419 ATP-grasp-like domain Aa31R_836 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Aa31R_836 PF03466 LysR substrate binding domain Aa31R_838 PF00248 Aldo/keto reductase family Aa31R_839 PF00135 Carboxylesterase family Aa31R_842 PF03466 LysR substrate binding domain Aa31R_842 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Aa31R_844 PF01380 SIS domain Aa31R_845 PF00455 DeoR C terminal sensor domain Aa31R_845 PF08220 DeoR-like helix-turn-helix domain Aa31R_859 PF02602 Uroporphyrinogen-III synthase HemD Aa31R_86 PF00574 Clp protease Aa31R_867 PF09371 Tex-like protein N-terminal domain Aa31R_867 PF17674 HHH domain Aa31R_867 PF16921 Tex protein YqgF-like domain Aa31R_867 PF00575 S1 RNA binding domain Aa31R_87 PF06689 ClpX C4-type zinc finger Aa31R_87 PF07724 AAA domain (Cdc48 subfamily) Aa31R_87 PF10431 C-terminal, D2-small domain, of ClpB protein Aa31R_885 PF07274 Protein of unknown function (DUF1440) Aa31R_895 PF04542 Sigma-70 region 2 Aa31R_895 PF08281 Sigma-70, region 4 Aa31R_898 PF04073 Aminoacyl-tRNA editing domain Aa31R_898 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Aa31R_898 PF03129 Anticodon binding domain Aa31R_905 PF00209 Sodium:neurotransmitter symporter family Aa31R_918 PF04972 BON domain Aa31R_918 PF00263 Bacterial type II and III secretion system protein Aa31R_918 PF13629 Pilus formation protein N terminal region Aa31R_923 PF02130 Uncharacterized protein family UPF0054 Aa31R_927 PF02559 CarD-like/TRCF domain Aa31R_927 PF00270 DEAD/DEAH box helicase Aa31R_927 PF17757 UvrB interaction domain Aa31R_927 PF00271 Helicase conserved C-terminal domain Aa31R_927 PF03461 TRCF domain Aa31R_936 PF01795 MraW methylase family Aa31R_939 PF01225 Mur ligase family, catalytic domain Aa31R_939 PF08245 Mur ligase middle domain Aa31R_939 PF02875 Mur ligase family, glutamate ligase domain Aa31R_94 PF01980 tRNA-methyltransferase O Aa31R_94 PF18389 TrmO C-terminal domain Aa31R_942 PF02875 Mur ligase family, glutamate ligase domain Aa31R_942 PF08245 Mur ligase middle domain Aa31R_949 PF00091 Tubulin/FtsZ family, GTPase domain Aa31R_949 PF12327 FtsZ family, C-terminal domain Aa31R_955 PF02557 D-alanyl-D-alanine carboxypeptidase Aa31R_978 PF13662 Toprim domain Aa31R_978 PF02132 RecR protein Aa31R_992 PF04279 Intracellular septation protein A Aa31R_996 PF02463 RecF/RecN/SMC N terminal domain Aa31S_10 PF02811 PHP domain Aa31S_10 PF01336 OB-fold nucleic acid binding domain Aa31S_10 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Aa31S_10 PF14579 Helix-hairpin-helix motif Aa31S_10 PF07733 Bacterial DNA polymerase III alpha NTPase domain Aa31S_1005 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain Aa31S_1005 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain Aa31S_1009 PF00905 Penicillin binding protein transpeptidase domain Aa31S_1009 PF00912 Transglycosylase Aa31S_1009 PF06832 Penicillin-Binding Protein C-terminus Family Aa31S_1015 PF01261 Xylose isomerase-like TIM barrel Aa31S_1017 PF03222 Tryptophan/tyrosine permease family Aa31S_102 PF00181 Ribosomal Proteins L2, RNA binding domain Aa31S_102 PF03947 Ribosomal Proteins L2, C-terminal domain Aa31S_1022 PF18030 RimK PreATP-grasp domain Aa31S_1022 PF08443 RimK-like ATP-grasp domain Aa31S_1042 PF04055 Radical SAM superfamily Aa31S_1048 PF02272 DHHA1 domain Aa31S_1048 PF01368 DHH family Aa31S_1048 PF17768 RecJ OB domain Aa31S_107 PF03466 LysR substrate binding domain Aa31S_107 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Aa31S_1079 PF01728 FtsJ-like methyltransferase Aa31S_1079 PF18125 RlmM ferredoxin-like domain Aa31S_1081 PF01063 Amino-transferase class IV Aa31S_1084 PF01316 Arginine repressor, DNA binding domain Aa31S_1084 PF02863 Arginine repressor, C-terminal domain Aa31S_1090 PF04205 FMN-binding domain Aa31S_1099 PF01032 FecCD transport family Aa31S_11 PF00501 AMP-binding enzyme Aa31S_110 PF01144 Coenzyme A transferase Aa31S_1102 PF04216 Protein involved in formate dehydrogenase formation Aa31S_111 PF02667 Short chain fatty acid transporter Aa31S_1115 PF00764 Arginosuccinate synthase Aa31S_1117 PF00009 Elongation factor Tu GTP binding domain Aa31S_1117 PF03144 Elongation factor Tu domain 2 Aa31S_1117 PF16658 Class II release factor RF3, C-terminal domain Aa31S_112 PF00108 Thiolase, N-terminal domain Aa31S_112 PF02803 Thiolase, C-terminal domain Aa31S_1120 PF08335 GlnD PII-uridylyltransferase Aa31S_1120 PF03710 Glutamate-ammonia ligase adenylyltransferase Aa31S_1125 PF00528 Binding-protein-dependent transport system inner membrane component Aa31S_1136 PF16123 Hydroxyacylglutathione hydrolase C-terminus Aa31S_1136 PF00753 Metallo-beta-lactamase superfamily Aa31S_115 PF00696 Amino acid kinase family Aa31S_1167 PF03606 C4-dicarboxylate anaerobic carrier Aa31S_1171 PF01555 DNA methylase Aa31S_1171 PF18273 Type III R-M EcoP15I C-terminal domain Aa31S_1173 PF00176 SNF2 family N-terminal domain Aa31S_1173 PF00271 Helicase conserved C-terminal domain Aa31S_1192 PF02348 Cytidylyltransferase Aa31S_1195 PF00664 ABC transporter transmembrane region Aa31S_1195 PF00005 ABC transporter Aa31S_1199 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) Aa31S_1202 PF01515 Phosphate acetyl/butaryl transferase Aa31S_1202 PF07085 DRTGG domain Aa31S_1203 PF00871 Acetokinase family Aa31S_1208 PF00343 Carbohydrate phosphorylase Aa31S_1213 PF07992 Pyridine nucleotide-disulphide oxidoreductase Aa31S_1213 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Aa31S_1214 PF00881 Nitroreductase family Aa31S_1225 PF00561 alpha/beta hydrolase fold Aa31S_1230 PF00578 AhpC/TSA family Aa31S_1231 PF02683 Cytochrome C biogenesis protein transmembrane region Aa31S_1239 PF16901 C-terminal domain of alpha-glycerophosphate oxidase Aa31S_1239 PF01266 FAD dependent oxidoreductase Aa31S_1246 PF18273 Type III R-M EcoP15I C-terminal domain Aa31S_1246 PF01555 DNA methylase Aa31S_1251 PF00453 Ribosomal protein L20 Aa31S_1258 PF00107 Zinc-binding dehydrogenase Aa31S_1258 PF08240 Alcohol dehydrogenase GroES-like domain Aa31S_1266 PF13091 PLD-like domain Aa31S_1266 PF13396 Phospholipase_D-nuclease N-terminal Aa31S_127 PF01451 Low molecular weight phosphotyrosine protein phosphatase Aa31S_1280 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Aa31S_1284 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Aa31S_1284 PF00128 Alpha amylase, catalytic domain Aa31S_1284 PF02806 Alpha amylase, C-terminal all-beta domain Aa31S_1288 PF00343 Carbohydrate phosphorylase Aa31S_129 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Aa31S_1293 PF17193 MukF C-terminal domain Aa31S_1293 PF03882 MukF winged-helix domain Aa31S_1293 PF17192 MukF middle domain Aa31S_1294 PF01553 Acyltransferase Aa31S_1294 PF00501 AMP-binding enzyme Aa31S_1302 PF00665 Integrase core domain Aa31S_1302 PF13276 HTH-like domain Aa31S_1305 PF00210 Ferritin-like domain Aa31S_1308 PF13545 Crp-like helix-turn-helix domain Aa31S_1308 PF00027 Cyclic nucleotide-binding domain Aa31S_1312 PF02811 PHP domain Aa31S_1327 PF00005 ABC transporter Aa31S_1330 PF01497 Periplasmic binding protein Aa31S_1342 PF00571 CBS domain Aa31S_1342 PF01380 SIS domain Aa31S_1357 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit Aa31S_1359 PF00593 TonB dependent receptor Aa31S_1359 PF07715 TonB-dependent Receptor Plug Domain Aa31S_1366 PF00317 Ribonucleotide reductase, all-alpha domain Aa31S_1366 PF03477 ATP cone domain Aa31S_1366 PF02867 Ribonucleotide reductase, barrel domain Aa31S_1376 PF00005 ABC transporter Aa31S_1387 PF01967 MoaC family Aa31S_139 PF00528 Binding-protein-dependent transport system inner membrane component Aa31S_14 PF05662 Coiled stalk of trimeric autotransporter adhesin Aa31S_14 PF05658 Head domain of trimeric autotransporter adhesin Aa31S_14 PF03895 YadA-like membrane anchor domain Aa31S_14 PF13018 Extended Signal Peptide of Type V secretion system Aa31S_1401 PF00380 Ribosomal protein S9/S16 Aa31S_1412 PF00849 RNA pseudouridylate synthase Aa31S_1418 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Aa31S_1418 PF00672 HAMP domain Aa31S_1418 PF00512 His Kinase A (phospho-acceptor) domain Aa31S_1420 PF08402 TOBE domain Aa31S_1420 PF00005 ABC transporter Aa31S_1423 PF01728 FtsJ-like methyltransferase Aa31S_1425 PF00816 H-NS histone family Aa31S_1426 PF03553 Na+/H+ antiporter family Aa31S_1429 PF17191 RecG wedge domain Aa31S_1429 PF00271 Helicase conserved C-terminal domain Aa31S_1429 PF00270 DEAD/DEAH box helicase Aa31S_1448 PF05494 MlaC protein Aa31S_1449 PF13466 STAS domain Aa31S_1450 PF01722 BolA-like protein Aa31S_1453 PF03412 Peptidase C39 family Aa31S_1453 PF00005 ABC transporter Aa31S_1453 PF00664 ABC transporter transmembrane region Aa31S_1455 PF00535 Glycosyl transferase family 2 Aa31S_1458 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) Aa31S_146 PF13335 Magnesium chelatase, subunit ChlI C-terminal Aa31S_146 PF01078 Magnesium chelatase, subunit ChlI Aa31S_1463 PF00665 Integrase core domain Aa31S_1463 PF13276 HTH-like domain Aa31S_1470 PF06804 NlpB/DapX lipoprotein Aa31S_1476 PF00696 Amino acid kinase family Aa31S_1476 PF01842 ACT domain Aa31S_1476 PF13840 ACT domain Aa31S_1476 PF00742 Homoserine dehydrogenase Aa31S_1476 PF03447 Homoserine dehydrogenase, NAD binding domain Aa31S_1482 PF01145 SPFH domain / Band 7 family Aa31S_1485 PF01725 Ham1 family Aa31S_1489 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Aa31S_1489 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Aa31S_1493 PF02614 Glucuronate isomerase Aa31S_1496 PF03480 Bacterial extracellular solute-binding protein, family 7 Aa31S_1506 PF05362 Lon protease (S16) C-terminal proteolytic domain Aa31S_1506 PF02190 ATP-dependent protease La (LON) substrate-binding domain Aa31S_1506 PF00004 ATPase family associated with various cellular activities (AAA) Aa31S_1507 PF04545 Sigma-70, region 4 Aa31S_1507 PF04539 Sigma-70 region 3 Aa31S_1507 PF03979 Sigma-70 factor, region 1.1 Aa31S_1507 PF04546 Sigma-70, non-essential region Aa31S_1507 PF00140 Sigma-70 factor, region 1.2 Aa31S_1507 PF04542 Sigma-70 region 2 Aa31S_1514 PF03120 NAD-dependent DNA ligase OB-fold domain Aa31S_1514 PF01653 NAD-dependent DNA ligase adenylation domain Aa31S_1514 PF00533 BRCA1 C Terminus (BRCT) domain Aa31S_1514 PF03119 NAD-dependent DNA ligase C4 zinc finger domain Aa31S_1514 PF12826 Helix-hairpin-helix motif Aa31S_1548 PF01389 OmpA-like transmembrane domain Aa31S_1548 PF00691 OmpA family Aa31S_1553 PF01979 Amidohydrolase family Aa31S_1589 PF03925 SeqA protein C-terminal domain Aa31S_1589 PF17206 SeqA protein N-terminal domain Aa31S_1592 PF01475 Ferric uptake regulator family Aa31S_1593 PF03989 DNA gyrase C-terminal domain, beta-propeller Aa31S_1593 PF00521 DNA gyrase/topoisomerase IV, subunit A Aa31S_1594 PF04247 Invasion gene expression up-regulator, SirB Aa31S_1602 PF04393 Protein of unknown function (DUF535) Aa31S_1603 PF07715 TonB-dependent Receptor Plug Domain Aa31S_1608 PF01717 Cobalamin-independent synthase, Catalytic domain Aa31S_1608 PF08267 Cobalamin-independent synthase, N-terminal domain Aa31S_1618 PF00950 ABC 3 transport family Aa31S_1627 PF00456 Transketolase, thiamine diphosphate binding domain Aa31S_1642 PF02525 Flavodoxin-like fold Aa31S_165 PF00665 Integrase core domain Aa31S_1653 PF00814 Glycoprotease family Aa31S_167 PF01078 Magnesium chelatase, subunit ChlI Aa31S_167 PF13335 Magnesium chelatase, subunit ChlI C-terminal Aa31S_1688 PF00483 Nucleotidyl transferase Aa31S_169 PF01551 Peptidase family M23 Aa31S_1690 PF13406 Transglycosylase SLT domain Aa31S_1692 PF00535 Glycosyl transferase family 2 Aa31S_1697 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system Aa31S_1705 PF02634 FdhD/NarQ family Aa31S_171 PF00300 Histidine phosphatase superfamily (branch 1) Aa31S_1713 PF12798 4Fe-4S binding domain Aa31S_1713 PF00037 4Fe-4S binding domain Aa31S_1729 PF02817 e3 binding domain Aa31S_1729 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Aa31S_1729 PF00364 Biotin-requiring enzyme Aa31S_1730 PF00676 Dehydrogenase E1 component Aa31S_1730 PF16870 2-oxoglutarate dehydrogenase C-terminal Aa31S_1730 PF02779 Transketolase, pyrimidine binding domain Aa31S_1730 PF16078 2-oxoglutarate dehydrogenase N-terminus Aa31S_1735 PF17804 Tail specific protease N-terminal domain Aa31S_1735 PF00595 PDZ domain Aa31S_1735 PF03572 Peptidase family S41 Aa31S_1735 PF11818 C-terminal domain of tail specific protease (DUF3340) Aa31S_1736 PF04352 ProQ/FINO family Aa31S_1736 PF17516 ProQ C-terminal domain Aa31S_1738 PF02470 MlaD protein Aa31S_1744 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Aa31S_1744 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region Aa31S_1749 PF01580 FtsK/SpoIIIE family Aa31S_1749 PF09397 Ftsk gamma domain Aa31S_1749 PF17854 FtsK alpha domain Aa31S_1749 PF13491 4TM region of DNA translocase FtsK/SpoIIIE Aa31S_1753 PF01865 Protein of unknown function DUF47 Aa31S_1757 PF03550 Outer membrane lipoprotein LolB Aa31S_1764 PF00266 Aminotransferase class-V Aa31S_1766 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Aa31S_1774 PF02547 Queuosine biosynthesis protein Aa31S_1775 PF00155 Aminotransferase class I and II Aa31S_1778 PF02699 Preprotein translocase subunit Aa31S_1783 PF00171 Aldehyde dehydrogenase family Aa31S_1783 PF00465 Iron-containing alcohol dehydrogenase Aa31S_1787 PF13407 Periplasmic binding protein domain Aa31S_1790 PF07690 Major Facilitator Superfamily Aa31S_1806 PF02378 Phosphotransferase system, EIIC Aa31S_1806 PF00367 phosphotransferase system, EIIB Aa31S_1810 PF00583 Acetyltransferase (GNAT) family Aa31S_1811 PF17946 RecC C-terminal domain Aa31S_1819 PF01618 MotA/TolQ/ExbB proton channel family Aa31S_1827 PF01330 RuvA N terminal domain Aa31S_1827 PF07499 RuvA, C-terminal domain Aa31S_1834 PF00152 tRNA synthetases class II (D, K and N) Aa31S_1834 PF02938 GAD domain Aa31S_1834 PF01336 OB-fold nucleic acid binding domain Aa31S_184 PF00579 tRNA synthetases class I (W and Y) Aa31S_1840 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Aa31S_1853 PF00892 EamA-like transporter family Aa31S_1857 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Aa31S_1861 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Aa31S_1861 PF00005 ABC transporter Aa31S_1863 PF00486 Transcriptional regulatory protein, C terminal Aa31S_1863 PF00072 Response regulator receiver domain Aa31S_1868 PF07681 DoxX Aa31S_1869 PF00575 S1 RNA binding domain Aa31S_1869 PF10150 Ribonuclease E/G family Aa31S_1869 PF12111 Polyribonucleotide phosphorylase C terminal Aa31S_187 PF03830 PTS system sorbose subfamily IIB component Aa31S_187 PF03610 PTS system fructose IIA component Aa31S_1872 PF00085 Thioredoxin Aa31S_1878 PF00171 Aldehyde dehydrogenase family Aa31S_1920 PF01226 Formate/nitrite transporter Aa31S_1925 PF00365 Phosphofructokinase Aa31S_1927 PF16916 Dimerisation domain of Zinc Transporter Aa31S_1927 PF01545 Cation efflux family Aa31S_1934 PF14622 Ribonuclease-III-like Aa31S_1934 PF00035 Double-stranded RNA binding motif Aa31S_1936 PF10396 GTP-binding protein TrmE N-terminus Aa31S_1936 PF12631 MnmE helical domain Aa31S_1936 PF01926 50S ribosome-binding GTPase Aa31S_1942 PF11638 DnaA N-terminal domain Aa31S_1942 PF08299 Bacterial dnaA protein helix-turn-helix Aa31S_1942 PF00308 Bacterial dnaA protein Aa31S_1956 PF00580 UvrD/REP helicase N-terminal domain Aa31S_1956 PF13361 UvrD-like helicase C-terminal domain Aa31S_1956 PF12462 DNA helicase IV / RNA helicase N terminal Aa31S_196 PF00535 Glycosyl transferase family 2 Aa31S_1971 PF01578 Cytochrome C assembly protein Aa31S_1971 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal Aa31S_1996 PF02660 Glycerol-3-phosphate acyltransferase Aa31S_2011 PF03313 Serine dehydratase alpha chain Aa31S_2011 PF03315 Serine dehydratase beta chain Aa31S_2033 PF00403 Heavy-metal-associated domain Aa31S_2036 PF01040 UbiA prenyltransferase family Aa31S_2041 PF00156 Phosphoribosyl transferase domain Aa31S_2042 PF02595 Glycerate kinase family Aa31S_2044 PF13556 PucR C-terminal helix-turn-helix domain Aa31S_2044 PF05651 Putative sugar diacid recognition Aa31S_2044 PF17853 GGDEF-like domain Aa31S_2049 PF00013 KH domain Aa31S_2049 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain Aa31S_2049 PF01138 3' exoribonuclease family, domain 1 Aa31S_2049 PF00575 S1 RNA binding domain Aa31S_2049 PF03725 3' exoribonuclease family, domain 2 Aa31S_2054 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain Aa31S_2054 PF00437 Type II/IV secretion system protein Aa31S_2060 PF01235 Sodium:alanine symporter family Aa31S_2064 PF01207 Dihydrouridine synthase (Dus) Aa31S_2079 PF00378 Enoyl-CoA hydratase/isomerase Aa31S_2084 PF04220 Der GTPase activator (YihI) Aa31S_2089 PF00293 NUDIX domain Aa31S_2091 PF00005 ABC transporter Aa31S_21 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Aa31S_212 PF00874 PRD domain Aa31S_238 PF03143 Elongation factor Tu C-terminal domain Aa31S_238 PF03144 Elongation factor Tu domain 2 Aa31S_238 PF00009 Elongation factor Tu GTP binding domain Aa31S_245 PF00892 EamA-like transporter family Aa31S_249 PF02646 RmuC family Aa31S_253 PF01694 Rhomboid family Aa31S_264 PF02163 Peptidase family M50 Aa31S_264 PF00595 PDZ domain Aa31S_28 PF01098 Cell cycle protein Aa31S_297 PF01266 FAD dependent oxidoreductase Aa31S_314 PF02556 Preprotein translocase subunit SecB Aa31S_32 PF00270 DEAD/DEAH box helicase Aa31S_32 PF00271 Helicase conserved C-terminal domain Aa31S_323 PF02527 rRNA small subunit methyltransferase G Aa31S_325 PF00119 ATP synthase A chain Aa31S_327 PF00430 ATP synthase B/B' CF(0) Aa31S_335 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) Aa31S_335 PF12008 Type I restriction and modification enzyme - subunit R C terminal Aa31S_335 PF18766 SWI2/SNF2 ATPase Aa31S_345 PF12833 Helix-turn-helix domain Aa31S_352 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Aa31S_352 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Aa31S_358 PF00445 Ribonuclease T2 family Aa31S_359 PF00162 Phosphoglycerate kinase Aa31S_360 PF01116 Fructose-bisphosphate aldolase class-II Aa31S_362 PF12146 Serine aminopeptidase, S33 Aa31S_377 PF09335 SNARE associated Golgi protein Aa31S_38 PF00698 Acyl transferase domain Aa31S_385 PF01075 Glycosyltransferase family 9 (heptosyltransferase) Aa31S_386 PF02627 Carboxymuconolactone decarboxylase family Aa31S_387 PF12833 Helix-turn-helix domain Aa31S_387 PF12852 Cupin Aa31S_39 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Aa31S_39 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Aa31S_402 PF04085 rod shape-determining protein MreC Aa31S_405 PF01746 tRNA (Guanine-1)-methyltransferase Aa31S_412 PF01812 5-formyltetrahydrofolate cyclo-ligase family Aa31S_416 PF00884 Sulfatase Aa31S_417 PF00881 Nitroreductase family Aa31S_42 PF02620 Large ribosomal RNA subunit accumulation protein YceD Aa31S_422 PF00873 AcrB/AcrD/AcrF family Aa31S_424 PF00440 Bacterial regulatory proteins, tetR family Aa31S_439 PF00717 Peptidase S24-like Aa31S_439 PF01381 Helix-turn-helix Aa31S_44 PF08241 Methyltransferase domain Aa31S_442 PF02441 Flavoprotein Aa31S_442 PF04127 DNA / pantothenate metabolism flavoprotein Aa31S_444 PF00440 Bacterial regulatory proteins, tetR family Aa31S_446 PF13545 Crp-like helix-turn-helix domain Aa31S_446 PF00027 Cyclic nucleotide-binding domain Aa31S_459 PF17755 UvrA DNA-binding domain Aa31S_459 PF17760 UvrA interaction domain Aa31S_466 PF07516 SecA Wing and Scaffold domain Aa31S_466 PF02810 SEC-C motif Aa31S_466 PF07517 SecA DEAD-like domain Aa31S_466 PF01043 SecA preprotein cross-linking domain Aa31S_472 PF10786 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) Aa31S_486 PF00107 Zinc-binding dehydrogenase Aa31S_486 PF08240 Alcohol dehydrogenase GroES-like domain Aa31S_490 PF01578 Cytochrome C assembly protein Aa31S_506 PF12800 4Fe-4S binding domain Aa31S_506 PF13247 4Fe-4S dicluster domain Aa31S_533 PF01177 Asp/Glu/Hydantoin racemase Aa31S_568 PF01106 NifU-like domain Aa31S_568 PF01521 Iron-sulphur cluster biosynthesis Aa31S_573 PF01797 Transposase IS200 like Aa31S_578 PF00410 Ribosomal protein S8 Aa31S_584 PF00344 SecY translocase Aa31S_586 PF00416 Ribosomal protein S13/S18 Aa31S_594 PF00149 Calcineurin-like phosphoesterase Aa31S_623 PF08340 Domain of unknown function (DUF1732) Aa31S_623 PF03755 YicC-like family, N-terminal region Aa31S_627 PF01207 Dihydrouridine synthase (Dus) Aa31S_629 PF01207 Dihydrouridine synthase (Dus) Aa31S_631 PF00528 Binding-protein-dependent transport system inner membrane component Aa31S_635 PF14815 NUDIX domain Aa31S_635 PF00730 HhH-GPD superfamily base excision DNA repair protein Aa31S_637 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain Aa31S_637 PF01464 Transglycosylase SLT domain Aa31S_638 PF03923 Uncharacterized lipoprotein Aa31S_644 PF04205 FMN-binding domain Aa31S_647 PF00175 Oxidoreductase NAD-binding domain Aa31S_647 PF00111 2Fe-2S iron-sulfur cluster binding domain Aa31S_647 PF00970 Oxidoreductase FAD-binding domain Aa31S_658 PF00483 Nucleotidyl transferase Aa31S_660 PF02599 Global regulator protein family Aa31S_674 PF02810 SEC-C motif Aa31S_695 PF02541 Ppx/GppA phosphatase family Aa31S_699 PF01295 Adenylate cyclase, class-I Aa31S_699 PF12633 Adenylate cyclase NT domain Aa31S_700 PF03900 Porphobilinogen deaminase, C-terminal domain Aa31S_700 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain Aa31S_702 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase Aa31S_703 PF07219 HemY protein N-terminus Aa31S_704 PF02592 Putative vitamin uptake transporter Aa31S_708 PF01272 Transcription elongation factor, GreA/GreB, C-term Aa31S_708 PF03449 Transcription elongation factor, N-terminal Aa31S_712 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Aa31S_712 PF03466 LysR substrate binding domain Aa31S_713 PF00575 S1 RNA binding domain Aa31S_713 PF09371 Tex-like protein N-terminal domain Aa31S_713 PF17674 HHH domain Aa31S_713 PF16921 Tex protein YqgF-like domain Aa31S_714 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Aa31S_714 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Aa31S_724 PF01491 Frataxin-like domain Aa31S_728 PF03352 Methyladenine glycosylase Aa31S_732 PF00106 short chain dehydrogenase Aa31S_735 PF17188 MucB/RseB C-terminal domain Aa31S_735 PF03888 MucB/RseB N-terminal domain Aa31S_765 PF00528 Binding-protein-dependent transport system inner membrane component Aa31S_768 PF02381 MraZ protein, putative antitoxin-like Aa31S_796 PF13635 Domain of unknown function (DUF4143) Aa31S_796 PF13173 AAA domain Aa31S_797 PF00107 Zinc-binding dehydrogenase Aa31S_797 PF08240 Alcohol dehydrogenase GroES-like domain Aa31S_798 PF02926 THUMP domain Aa31S_798 PF01170 Putative RNA methylase family UPF0020 Aa31S_798 PF10672 S-adenosylmethionine-dependent methyltransferase Aa31S_805 PF00005 ABC transporter Aa31S_806 PF01032 FecCD transport family Aa31S_809 PF00149 Calcineurin-like phosphoesterase Aa31S_822 PF01464 Transglycosylase SLT domain Aa31S_822 PF14718 Soluble lytic murein transglycosylase L domain Aa31S_838 PF00005 ABC transporter Aa31S_839 PF13407 Periplasmic binding protein domain Aa31S_840 PF00356 Bacterial regulatory proteins, lacI family Aa31S_853 PF03471 Transporter associated domain Aa31S_853 PF00571 CBS domain Aa31S_866 PF01521 Iron-sulphur cluster biosynthesis Aa31S_87 PF00467 KOW motif Aa31S_87 PF02357 Transcription termination factor nusG Aa31S_873 PF00005 ABC transporter Aa31S_873 PF08402 TOBE domain Aa31S_874 PF00528 Binding-protein-dependent transport system inner membrane component Aa31S_882 PF00226 DnaJ domain Aa31S_882 PF01556 DnaJ C terminal domain Aa31S_884 PF00709 Adenylosuccinate synthetase Aa31S_899 PF01066 CDP-alcohol phosphatidyltransferase Aa31S_918 PF00809 Pterin binding enzyme Aa31S_919 PF11798 IMS family HHH motif Aa31S_919 PF00817 impB/mucB/samB family Aa31S_92 PF00542 Ribosomal protein L7/L12 C-terminal domain Aa31S_92 PF16320 Ribosomal protein L7/L12 dimerisation domain Aa31S_93 PF00562 RNA polymerase Rpb2, domain 6 Aa31S_93 PF10385 RNA polymerase beta subunit external 1 domain Aa31S_93 PF04560 RNA polymerase Rpb2, domain 7 Aa31S_93 PF04565 RNA polymerase Rpb2, domain 3 Aa31S_93 PF04561 RNA polymerase Rpb2, domain 2 Aa31S_93 PF04563 RNA polymerase beta subunit Aa31S_930 PF04317 YcjX-like family, DUF463 Aa31S_936 PF01715 IPP transferase Aa31S_937 PF01119 DNA mismatch repair protein, C-terminal domain Aa31S_937 PF08676 MutL C terminal dimerisation domain Aa31S_95 PF01797 Transposase IS200 like Aa31S_950 PF01432 Peptidase family M3 Aa31S_977 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) Aa31S_977 PF18766 SWI2/SNF2 ATPase Aa31S_977 PF12008 Type I restriction and modification enzyme - subunit R C terminal Aa31S_980 PF00528 Binding-protein-dependent transport system inner membrane component Aa31S_981 PF00005 ABC transporter Aa31S_981 PF08402 TOBE domain Aa31S_983 PF00528 Binding-protein-dependent transport system inner membrane component Aa31S_99 PF07650 KH domain Aa31S_99 PF00189 Ribosomal protein S3, C-terminal domain Aa31S_994 PF03449 Transcription elongation factor, N-terminal Aa31S_994 PF01272 Transcription elongation factor, GreA/GreB, C-term Aa4R_1000 PF08013 Tagatose 6 phosphate kinase Aa4R_1001 PF03611 PTS system sugar-specific permease component Aa4R_1002 PF00107 Zinc-binding dehydrogenase Aa4R_1002 PF08240 Alcohol dehydrogenase GroES-like domain Aa4R_1007 PF17848 Acetyl-coA carboxylase zinc finger domain Aa4R_1007 PF01039 Carboxyl transferase domain Aa4R_1011 PF03956 Lysine exporter LysO Aa4R_1012 PF00849 RNA pseudouridylate synthase Aa4R_1023 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Aa4R_1028 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Aa4R_1028 PF00128 Alpha amylase, catalytic domain Aa4R_1028 PF18390 Glycogen debranching enzyme C-terminal domain Aa4R_1030 PF00534 Glycosyl transferases group 1 Aa4R_1030 PF08323 Starch synthase catalytic domain Aa4R_1031 PF00343 Carbohydrate phosphorylase Aa4R_1035 PF00768 D-alanyl-D-alanine carboxypeptidase Aa4R_1037 PF01553 Acyltransferase Aa4R_1037 PF00501 AMP-binding enzyme Aa4R_1037 PF13193 AMP-binding enzyme C-terminal domain Aa4R_1039 PF04310 MukB N-terminal Aa4R_1039 PF16330 MukB hinge domain Aa4R_1045 PF03958 Bacterial type II/III secretion system short domain Aa4R_1045 PF00263 Bacterial type II and III secretion system protein Aa4R_1055 PF01433 Peptidase family M1 domain Aa4R_1055 PF17432 Domain of unknown function (DUF3458_C) ARM repeats Aa4R_1055 PF11940 Domain of unknown function (DUF3458) Ig-like fold Aa4R_1056 PF00155 Aminotransferase class I and II Aa4R_1066 PF07715 TonB-dependent Receptor Plug Domain Aa4R_1066 PF00593 TonB dependent receptor Aa4R_1067 PF00593 TonB dependent receptor Aa4R_1067 PF07715 TonB-dependent Receptor Plug Domain Aa4R_1072 PF00593 TonB dependent receptor Aa4R_1082 PF04715 Anthranilate synthase component I, N terminal region Aa4R_1082 PF00425 chorismate binding enzyme Aa4R_1093 PF02436 Conserved carboxylase domain Aa4R_1093 PF00682 HMGL-like Aa4R_1093 PF00364 Biotin-requiring enzyme Aa4R_1106 PF02534 Type IV secretory system Conjugative DNA transfer Aa4R_1109 PF03524 Conjugal transfer protein Aa4R_1119 PF01791 DeoC/LacD family aldolase Aa4R_1120 PF13407 Periplasmic binding protein domain Aa4R_1122 PF02653 Branched-chain amino acid transport system / permease component Aa4R_1123 PF00005 ABC transporter Aa4R_1124 PF00005 ABC transporter Aa4R_1129 PF00480 ROK family Aa4R_1130 PF00152 tRNA synthetases class II (D, K and N) Aa4R_1130 PF01336 OB-fold nucleic acid binding domain Aa4R_1135 PF01967 MoaC family Aa4R_1140 PF03575 Peptidase family S51 Aa4R_1149 PF01416 tRNA pseudouridine synthase Aa4R_1151 PF00572 Ribosomal protein L13 Aa4R_1154 PF12705 PD-(D/E)XK nuclease superfamily Aa4R_1154 PF00580 UvrD/REP helicase N-terminal domain Aa4R_1154 PF13361 UvrD-like helicase C-terminal domain Aa4R_1157 PF05362 Lon protease (S16) C-terminal proteolytic domain Aa4R_1157 PF13654 AAA domain Aa4R_1171 PF00005 ABC transporter Aa4R_1171 PF12857 TOBE-like domain Aa4R_1173 PF04315 Elongation factor P hydroxylase Aa4R_1177 PF00816 H-NS histone family Aa4R_1178 PF03553 Na+/H+ antiporter family Aa4R_1180 PF04345 Chorismate lyase Aa4R_1181 PF00270 DEAD/DEAH box helicase Aa4R_1181 PF17191 RecG wedge domain Aa4R_1181 PF00271 Helicase conserved C-terminal domain Aa4R_1182 PF02824 TGS domain Aa4R_1182 PF04607 Region found in RelA / SpoT proteins Aa4R_1182 PF13328 HD domain Aa4R_1182 PF13291 ACT domain Aa4R_1184 PF00625 Guanylate kinase Aa4R_1185 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Aa4R_1185 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Aa4R_1186 PF00892 EamA-like transporter family Aa4R_1189 PF08007 Cupin superfamily protein Aa4R_1190 PF02601 Exonuclease VII, large subunit Aa4R_1190 PF13742 OB-fold nucleic acid binding domain Aa4R_1197 PF02405 Permease MlaE Aa4R_1201 PF01722 BolA-like protein Aa4R_1207 PF04175 Protein of unknown function (DUF406) Aa4R_1208 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) Aa4R_1214 PF03951 Glutamine synthetase, beta-Grasp domain Aa4R_1214 PF00120 Glutamine synthetase, catalytic domain Aa4R_1216 PF03212 Pertactin Aa4R_1216 PF02395 Immunoglobulin A1 protease Aa4R_1216 PF03797 Autotransporter beta-domain Aa4R_1217 PF00578 AhpC/TSA family Aa4R_123 PF04575 Protein of unknown function (DUF560) Aa4R_1230 PF01648 4'-phosphopantetheinyl transferase superfamily Aa4R_1232 PF01145 SPFH domain / Band 7 family Aa4R_1235 PF01725 Ham1 family Aa4R_1237 PF04055 Radical SAM superfamily Aa4R_1237 PF06969 HemN C-terminal domain Aa4R_1239 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Aa4R_1239 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Aa4R_1241 PF01497 Periplasmic binding protein Aa4R_1248 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Aa4R_1249 PF17137 Domain of unknown function (DUF5110) Aa4R_1249 PF16338 Domain of unknown function (DUF4968) Aa4R_1249 PF13802 Galactose mutarotase-like Aa4R_1249 PF01055 Glycosyl hydrolases family 31 Aa4R_1254 PF01740 STAS domain Aa4R_1254 PF00916 Sulfate permease family Aa4R_1256 PF03979 Sigma-70 factor, region 1.1 Aa4R_1256 PF04545 Sigma-70, region 4 Aa4R_1256 PF04542 Sigma-70 region 2 Aa4R_1256 PF00140 Sigma-70 factor, region 1.2 Aa4R_1256 PF04539 Sigma-70 region 3 Aa4R_1256 PF04546 Sigma-70, non-essential region Aa4R_1271 PF00665 Integrase core domain Aa4R_1271 PF13276 HTH-like domain Aa4R_1278 PF00665 Integrase core domain Aa4R_1279 PF11798 IMS family HHH motif Aa4R_1279 PF00817 impB/mucB/samB family Aa4R_1288 PF13847 Methyltransferase domain Aa4R_1288 PF17827 PrmC N-terminal domain Aa4R_1289 PF03462 PCRF domain Aa4R_1289 PF00472 RF-1 domain Aa4R_1292 PF03485 Arginyl tRNA synthetase N terminal domain Aa4R_1292 PF05746 DALR anticodon binding domain Aa4R_1292 PF00750 tRNA synthetases class I (R) Aa4R_1299 PF01053 Cys/Met metabolism PLP-dependent enzyme Aa4R_1304 PF03372 Endonuclease/Exonuclease/phosphatase family Aa4R_1323 PF01926 50S ribosome-binding GTPase Aa4R_1323 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal Aa4R_1324 PF07690 Major Facilitator Superfamily Aa4R_1330 PF00528 Binding-protein-dependent transport system inner membrane component Aa4R_1339 PF07743 HSCB C-terminal oligomerisation domain Aa4R_1341 PF00111 2Fe-2S iron-sulfur cluster binding domain Aa4R_1343 PF09334 tRNA synthetases class I (M) Aa4R_1343 PF01588 Putative tRNA binding domain Aa4R_1345 PF00728 Glycosyl hydrolase family 20, catalytic domain Aa4R_1345 PF03173 Putative carbohydrate binding domain Aa4R_1345 PF02838 Glycosyl hydrolase family 20, domain 2 Aa4R_1345 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain Aa4R_1351 PF03471 Transporter associated domain Aa4R_1351 PF00571 CBS domain Aa4R_1353 PF13673 Acetyltransferase (GNAT) domain Aa4R_1353 PF08218 Citrate lyase ligase C-terminal domain Aa4R_1357 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase Aa4R_1357 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase Aa4R_1361 PF01263 Aldose 1-epimerase Aa4R_1363 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain Aa4R_1363 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain Aa4R_1367 PF00005 ABC transporter Aa4R_1369 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Aa4R_1369 PF18415 Histidine kinase receptor ArcB trans-membrane domain Aa4R_1369 PF00512 His Kinase A (phospho-acceptor) domain Aa4R_1369 PF01627 Hpt domain Aa4R_1369 PF00989 PAS fold Aa4R_1369 PF00072 Response regulator receiver domain Aa4R_137 PF00482 Type II secretion system (T2SS), protein F Aa4R_1372 PF00593 TonB dependent receptor Aa4R_1372 PF04886 PT repeat Aa4R_1372 PF07715 TonB-dependent Receptor Plug Domain Aa4R_1373 PF01025 GrpE Aa4R_138 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain Aa4R_138 PF00437 Type II/IV secretion system protein Aa4R_1381 PF03795 YCII-related domain Aa4R_1382 PF01464 Transglycosylase SLT domain Aa4R_1382 PF14718 Soluble lytic murein transglycosylase L domain Aa4R_1384 PF00912 Transglycosylase Aa4R_1392 PF00149 Calcineurin-like phosphoesterase Aa4R_1393 PF01497 Periplasmic binding protein Aa4R_1394 PF01032 FecCD transport family Aa4R_140 PF07963 Prokaryotic N-terminal methylation motif Aa4R_1401 PF02300 Fumarate reductase subunit C Aa4R_1404 PF00107 Zinc-binding dehydrogenase Aa4R_1404 PF08240 Alcohol dehydrogenase GroES-like domain Aa4R_1406 PF06508 Queuosine biosynthesis protein QueC Aa4R_1414 PF01546 Peptidase family M20/M25/M40 Aa4R_1414 PF07687 Peptidase dimerisation domain Aa4R_1415 PF03960 ArsC family Aa4R_1416 PF00183 Hsp90 protein Aa4R_1416 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Aa4R_1422 PF07478 D-ala D-ala ligase C-terminus Aa4R_1422 PF01820 D-ala D-ala ligase N-terminus Aa4R_1437 PF00528 Binding-protein-dependent transport system inner membrane component Aa4R_1443 PF05127 Helicase Aa4R_1443 PF13718 GNAT acetyltransferase 2 Aa4R_1443 PF17176 tRNA-binding domain Aa4R_1453 PF00437 Type II/IV secretion system protein Aa4R_1463 PF00209 Sodium:neurotransmitter symporter family Aa4R_1464 PF00849 RNA pseudouridylate synthase Aa4R_1493 PF02653 Branched-chain amino acid transport system / permease component Aa4R_1494 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Aa4R_1494 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Aa4R_1506 PF07219 HemY protein N-terminus Aa4R_151 PF01523 Putative modulator of DNA gyrase Aa4R_1510 PF01295 Adenylate cyclase, class-I Aa4R_1510 PF12633 Adenylate cyclase NT domain Aa4R_1514 PF02541 Ppx/GppA phosphatase family Aa4R_1515 PF01293 Phosphoenolpyruvate carboxykinase Aa4R_1524 PF02129 X-Pro dipeptidyl-peptidase (S15 family) Aa4R_1530 PF00248 Aldo/keto reductase family Aa4R_1531 PF00248 Aldo/keto reductase family Aa4R_1536 PF02810 SEC-C motif Aa4R_1543 PF04245 37-kD nucleoid-associated bacterial protein Aa4R_1551 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Aa4R_1551 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Aa4R_1551 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Aa4R_1551 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Aa4R_156 PF18389 TrmO C-terminal domain Aa4R_156 PF01980 tRNA-methyltransferase O Aa4R_1561 PF02424 ApbE family Aa4R_1578 PF01547 Bacterial extracellular solute-binding protein Aa4R_158 PF11867 Domain of unknown function (DUF3387) Aa4R_158 PF18766 SWI2/SNF2 ATPase Aa4R_158 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) Aa4R_1581 PF01207 Dihydrouridine synthase (Dus) Aa4R_1582 PF01207 Dihydrouridine synthase (Dus) Aa4R_1586 PF01138 3' exoribonuclease family, domain 1 Aa4R_1586 PF03725 3' exoribonuclease family, domain 2 Aa4R_159 PF18766 SWI2/SNF2 ATPase Aa4R_159 PF11867 Domain of unknown function (DUF3387) Aa4R_159 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) Aa4R_1595 PF01219 Prokaryotic diacylglycerol kinase Aa4R_1599 PF00118 TCP-1/cpn60 chaperonin family Aa4R_160 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) Aa4R_160 PF11867 Domain of unknown function (DUF3387) Aa4R_160 PF18766 SWI2/SNF2 ATPase Aa4R_161 PF02384 N-6 DNA Methylase Aa4R_1611 PF12724 Flavodoxin domain Aa4R_1639 PF05525 Branched-chain amino acid transport protein Aa4R_1640 PF01502 Phosphoribosyl-AMP cyclohydrolase Aa4R_1640 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase Aa4R_1644 PF02774 Semialdehyde dehydrogenase, dimerisation domain Aa4R_1644 PF01118 Semialdehyde dehydrogenase, NAD binding domain Aa4R_1646 PF17871 AAA lid domain Aa4R_1646 PF02861 Clp amino terminal domain, pathogenicity island component Aa4R_1646 PF10431 C-terminal, D2-small domain, of ClpB protein Aa4R_1646 PF07724 AAA domain (Cdc48 subfamily) Aa4R_1646 PF00004 ATPase family associated with various cellular activities (AAA) Aa4R_1648 PF02769 AIR synthase related protein, C-terminal domain Aa4R_1648 PF00586 AIR synthase related protein, N-terminal domain Aa4R_1649 PF00551 Formyl transferase Aa4R_1651 PF00589 Phage integrase family Aa4R_1651 PF02899 Phage integrase, N-terminal SAM-like domain Aa4R_1672 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain Aa4R_1672 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Aa4R_1679 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase Aa4R_168 PF10431 C-terminal, D2-small domain, of ClpB protein Aa4R_168 PF06689 ClpX C4-type zinc finger Aa4R_168 PF07724 AAA domain (Cdc48 subfamily) Aa4R_1681 PF00459 Inositol monophosphatase family Aa4R_1682 PF00009 Elongation factor Tu GTP binding domain Aa4R_1682 PF03143 Elongation factor Tu C-terminal domain Aa4R_1682 PF03144 Elongation factor Tu domain 2 Aa4R_1683 PF00459 Inositol monophosphatase family Aa4R_1685 PF05258 Dna[CI] antecedent, DciA Aa4R_1687 PF17755 UvrA DNA-binding domain Aa4R_1687 PF17760 UvrA interaction domain Aa4R_1699 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Aa4R_1699 PF07992 Pyridine nucleotide-disulphide oxidoreductase Aa4R_1703 PF00692 dUTPase Aa4R_1705 PF04002 RadC-like JAB domain Aa4R_1720 PF00873 AcrB/AcrD/AcrF family Aa4R_1727 PF00884 Sulfatase Aa4R_1733 PF03695 Uncharacterised protein family (UPF0149) Aa4R_1736 PF00886 Ribosomal protein S16 Aa4R_1743 PF17876 Cold shock domain Aa4R_1743 PF00575 S1 RNA binding domain Aa4R_1743 PF00773 RNB domain Aa4R_1743 PF08461 Ribonuclease R winged-helix domain Aa4R_1743 PF08206 Ribonuclease B OB domain Aa4R_1746 PF07690 Major Facilitator Superfamily Aa4R_1755 PF00664 ABC transporter transmembrane region Aa4R_1755 PF00005 ABC transporter Aa4R_1767 PF01975 Survival protein SurE Aa4R_1768 PF01142 tRNA pseudouridine synthase D (TruD) Aa4R_1773 PF13419 Haloacid dehalogenase-like hydrolase Aa4R_1777 PF00291 Pyridoxal-phosphate dependent enzyme Aa4R_1777 PF00585 C-terminal regulatory domain of Threonine dehydratase Aa4R_1778 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Aa4R_1778 PF00205 Thiamine pyrophosphate enzyme, central domain Aa4R_178 PF09976 Tetratricopeptide repeat-like domain Aa4R_1781 PF04932 O-Antigen ligase Aa4R_1786 PF00588 SpoU rRNA Methylase family Aa4R_1786 PF08032 RNA 2'-O ribose methyltransferase substrate binding Aa4R_1799 PF07690 Major Facilitator Superfamily Aa4R_1801 PF03830 PTS system sorbose subfamily IIB component Aa4R_1801 PF03610 PTS system fructose IIA component Aa4R_1802 PF03609 PTS system sorbose-specific iic component Aa4R_1803 PF03613 PTS system mannose/fructose/sorbose family IID component Aa4R_1806 PF13416 Bacterial extracellular solute-binding protein Aa4R_1827 PF03605 Anaerobic c4-dicarboxylate membrane transporter Aa4R_1834 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase Aa4R_1834 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Aa4R_1842 PF01266 FAD dependent oxidoreductase Aa4R_1847 PF01380 SIS domain Aa4R_1851 PF00455 DeoR C terminal sensor domain Aa4R_1851 PF08220 DeoR-like helix-turn-helix domain Aa4R_1860 PF08346 AntA/AntB antirepressor Aa4R_1860 PF10548 P22AR C-terminal domain Aa4R_187 PF17283 SprT-like zinc ribbon domain Aa4R_187 PF10263 SprT-like family Aa4R_1878 PF02780 Transketolase, C-terminal domain Aa4R_1878 PF00456 Transketolase, thiamine diphosphate binding domain Aa4R_1878 PF02779 Transketolase, pyrimidine binding domain Aa4R_1880 PF04994 TfoX C-terminal domain Aa4R_1880 PF04993 TfoX N-terminal domain Aa4R_1890 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) Aa4R_1891 PF03264 NapC/NirT cytochrome c family, N-terminal region Aa4R_1892 PF05257 CHAP domain Aa4R_1892 PF03738 Glutathionylspermidine synthase preATP-grasp Aa4R_1893 PF01075 Glycosyltransferase family 9 (heptosyltransferase) Aa4R_19 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Aa4R_19 PF00381 PTS HPr component phosphorylation site Aa4R_1926 PF01773 Na+ dependent nucleoside transporter N-terminus Aa4R_1926 PF07670 Nucleoside recognition Aa4R_1926 PF07662 Na+ dependent nucleoside transporter C-terminus Aa4R_1937 PF03222 Tryptophan/tyrosine permease family Aa4R_194 PF07840 FadR C-terminal domain Aa4R_194 PF00392 Bacterial regulatory proteins, gntR family Aa4R_1941 PF07724 AAA domain (Cdc48 subfamily) Aa4R_1941 PF00004 ATPase family associated with various cellular activities (AAA) Aa4R_1941 PF10431 C-terminal, D2-small domain, of ClpB protein Aa4R_1942 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Aa4R_1943 PF04333 MlaA lipoprotein Aa4R_1948 PF04748 Divergent polysaccharide deacetylase Aa4R_1949 PF13335 Magnesium chelatase, subunit ChlI C-terminal Aa4R_1949 PF01078 Magnesium chelatase, subunit ChlI Aa4R_196 PF02600 Disulfide bond formation protein DsbB Aa4R_1976 PF03180 NLPA lipoprotein Aa4R_1980 PF00459 Inositol monophosphatase family Aa4R_1983 PF04224 Protein of unknown function, DUF417 Aa4R_1985 PF00293 NUDIX domain Aa4R_1986 PF13419 Haloacid dehalogenase-like hydrolase Aa4R_1987 PF01479 S4 domain Aa4R_1991 PF00902 Sec-independent protein translocase protein (TatC) Aa4R_1993 PF02092 Glycyl-tRNA synthetase beta subunit Aa4R_1993 PF05746 DALR anticodon binding domain Aa4R_1998 PF02091 Glycyl-tRNA synthetase alpha subunit Aa4R_2 PF04998 RNA polymerase Rpb1, domain 5 Aa4R_2 PF00623 RNA polymerase Rpb1, domain 2 Aa4R_2 PF04997 RNA polymerase Rpb1, domain 1 Aa4R_2 PF04983 RNA polymerase Rpb1, domain 3 Aa4R_2 PF05000 RNA polymerase Rpb1, domain 4 Aa4R_2000 PF02613 Nitrate reductase delta subunit Aa4R_2002 PF12800 4Fe-4S binding domain Aa4R_2002 PF13247 4Fe-4S dicluster domain Aa4R_2010 PF01578 Cytochrome C assembly protein Aa4R_2016 PF13411 MerR HTH family regulatory protein Aa4R_2017 PF00106 short chain dehydrogenase Aa4R_2026 PF01909 Nucleotidyltransferase domain Aa4R_2029 PF08264 Anticodon-binding domain of tRNA Aa4R_2029 PF13603 Leucyl-tRNA synthetase, Domain 2 Aa4R_2029 PF00133 tRNA synthetases class I (I, L, M and V) Aa4R_2046 PF07977 FabA-like domain Aa4R_2050 PF00595 PDZ domain Aa4R_2050 PF02163 Peptidase family M50 Aa4R_2059 PF00593 TonB dependent receptor Aa4R_2059 PF07715 TonB-dependent Receptor Plug Domain Aa4R_2063 PF00581 Rhodanese-like domain Aa4R_2065 PF02646 RmuC family Aa4R_2078 PF02080 TrkA-C domain Aa4R_2078 PF02254 TrkA-N domain Aa4R_2080 PF06877 Regulator of ribonuclease activity B Aa4R_209 PF00005 ABC transporter Aa4R_2094 PF00654 Voltage gated chloride channel Aa4R_2095 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Aa4R_2095 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Aa4R_2110 PF00203 Ribosomal protein S19 Aa4R_2116 PF05258 Dna[CI] antecedent, DciA Aa4R_2118 PF00665 Integrase core domain Aa4R_2118 PF13276 HTH-like domain Aa4R_22 PF06288 Protein of unknown function (DUF1040) Aa4R_225 PF03916 Polysulphide reductase, NrfD Aa4R_23 PF01323 DSBA-like thioredoxin domain Aa4R_240 PF00308 Bacterial dnaA protein Aa4R_240 PF08299 Bacterial dnaA protein helix-turn-helix Aa4R_240 PF11638 DnaA N-terminal domain Aa4R_242 PF00825 Ribonuclease P Aa4R_25 PF05958 tRNA (Uracil-5-)-methyltransferase Aa4R_251 PF03167 Uracil DNA glycosylase superfamily Aa4R_252 PF03883 Peroxide stress protein YaaA Aa4R_262 PF02901 Pyruvate formate lyase-like Aa4R_262 PF01228 Glycine radical Aa4R_266 PF01553 Acyltransferase Aa4R_274 PF04055 Radical SAM superfamily Aa4R_277 PF04381 Putative exonuclease, RdgC Aa4R_28 PF00488 MutS domain V Aa4R_28 PF05190 MutS family domain IV Aa4R_28 PF05188 MutS domain II Aa4R_28 PF05192 MutS domain III Aa4R_28 PF01624 MutS domain I Aa4R_284 PF01252 Signal peptidase (SPase) II Aa4R_289 PF01649 Ribosomal protein S20 Aa4R_292 PF04461 Protein of unknown function (DUF520) Aa4R_293 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) Aa4R_296 PF03562 MltA specific insert domain Aa4R_296 PF06725 3D domain Aa4R_304 PF01464 Transglycosylase SLT domain Aa4R_313 PF03641 Possible lysine decarboxylase Aa4R_320 PF00528 Binding-protein-dependent transport system inner membrane component Aa4R_33 PF02447 GntP family permease Aa4R_340 PF07690 Major Facilitator Superfamily Aa4R_342 PF13649 Methyltransferase domain Aa4R_353 PF17274 Family of unknown function (DUF5339) Aa4R_371 PF05175 Methyltransferase small domain Aa4R_371 PF08468 Methyltransferase small domain N-terminal Aa4R_374 PF00464 Serine hydroxymethyltransferase Aa4R_377 PF08339 RTX C-terminal domain Aa4R_377 PF02382 N-terminal domain in RTX protein Aa4R_377 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) Aa4R_378 PF00005 ABC transporter Aa4R_378 PF03412 Peptidase C39 family Aa4R_378 PF00664 ABC transporter transmembrane region Aa4R_382 PF05068 Mannitol repressor Aa4R_383 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Aa4R_383 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Aa4R_389 PF04962 KduI/IolB family Aa4R_392 PF00171 Aldehyde dehydrogenase family Aa4R_417 PF00155 Aminotransferase class I and II Aa4R_420 PF04363 Protein of unknown function (DUF496) Aa4R_424 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase Aa4R_424 PF14572 Phosphoribosyl synthetase-associated domain Aa4R_427 PF01743 Poly A polymerase head domain Aa4R_427 PF01966 HD domain Aa4R_427 PF12627 Probable RNA and SrmB- binding site of polymerase A Aa4R_437 PF03605 Anaerobic c4-dicarboxylate membrane transporter Aa4R_439 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region Aa4R_439 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Aa4R_441 PF00528 Binding-protein-dependent transport system inner membrane component Aa4R_443 PF08402 TOBE domain Aa4R_443 PF00005 ABC transporter Aa4R_445 PF02470 MlaD protein Aa4R_446 PF04403 Paraquat-inducible protein A Aa4R_45 PF01595 Cyclin M transmembrane N-terminal domain Aa4R_45 PF00571 CBS domain Aa4R_45 PF03471 Transporter associated domain Aa4R_451 PF00753 Metallo-beta-lactamase superfamily Aa4R_452 PF00753 Metallo-beta-lactamase superfamily Aa4R_457 PF08442 ATP-grasp domain Aa4R_457 PF00549 CoA-ligase Aa4R_458 PF00549 CoA-ligase Aa4R_458 PF02629 CoA binding domain Aa4R_461 PF07450 Formate hydrogenlyase maturation protein HycH Aa4R_462 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Aa4R_463 PF12838 4Fe-4S dicluster domain Aa4R_473 PF01292 Prokaryotic cytochrome b561 Aa4R_476 PF01568 Molydopterin dinucleotide binding domain Aa4R_476 PF00384 Molybdopterin oxidoreductase Aa4R_476 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Aa4R_478 PF02634 FdhD/NarQ family Aa4R_487 PF04230 Polysaccharide pyruvyl transferase Aa4R_489 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) Aa4R_50 PF00696 Amino acid kinase family Aa4R_50 PF01472 PUA domain Aa4R_517 PF01569 PAP2 superfamily Aa4R_534 PF14376 Haem-binding domain Aa4R_534 PF03150 Di-haem cytochrome c peroxidase Aa4R_534 PF00034 Cytochrome c Aa4R_55 PF00155 Aminotransferase class I and II Aa4R_550 PF13286 Phosphohydrolase-associated domain Aa4R_550 PF01966 HD domain Aa4R_551 PF00005 ABC transporter Aa4R_551 PF16326 ABC transporter C-terminal domain Aa4R_551 PF12848 ABC transporter Aa4R_556 PF00456 Transketolase, thiamine diphosphate binding domain Aa4R_560 PF12805 FUSC-like inner membrane protein yccS Aa4R_562 PF02142 MGS-like domain Aa4R_568 PF01297 Zinc-uptake complex component A periplasmic Aa4R_572 PF00271 Helicase conserved C-terminal domain Aa4R_572 PF00176 SNF2 family N-terminal domain Aa4R_576 PF08267 Cobalamin-independent synthase, N-terminal domain Aa4R_576 PF01717 Cobalamin-independent synthase, Catalytic domain Aa4R_582 PF04393 Protein of unknown function (DUF535) Aa4R_591 PF03989 DNA gyrase C-terminal domain, beta-propeller Aa4R_591 PF00521 DNA gyrase/topoisomerase IV, subunit A Aa4R_599 PF03411 Penicillin-insensitive murein endopeptidase Aa4R_611 PF00043 Glutathione S-transferase, C-terminal domain Aa4R_611 PF02798 Glutathione S-transferase, N-terminal domain Aa4R_621 PF00691 OmpA family Aa4R_621 PF01389 OmpA-like transmembrane domain Aa4R_624 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component Aa4R_624 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Aa4R_626 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase Aa4R_628 PF01418 Helix-turn-helix domain, rpiR family Aa4R_628 PF01380 SIS domain Aa4R_640 PF00271 Helicase conserved C-terminal domain Aa4R_640 PF04408 Helicase associated domain (HA2) Aa4R_640 PF11898 Domain of unknown function (DUF3418) Aa4R_640 PF00270 DEAD/DEAH box helicase Aa4R_640 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold Aa4R_651 PF02687 FtsX-like permease family Aa4R_651 PF12704 MacB-like periplasmic core domain Aa4R_658 PF00557 Metallopeptidase family M24 Aa4R_659 PF08335 GlnD PII-uridylyltransferase Aa4R_659 PF01966 HD domain Aa4R_662 PF00005 ABC transporter Aa4R_664 PF12911 N-terminal TM domain of oligopeptide transport permease C Aa4R_664 PF00528 Binding-protein-dependent transport system inner membrane component Aa4R_674 PF01119 DNA mismatch repair protein, C-terminal domain Aa4R_674 PF08676 MutL C terminal dimerisation domain Aa4R_678 PF00535 Glycosyl transferase family 2 Aa4R_68 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Aa4R_68 PF07497 Rho termination factor, RNA-binding domain Aa4R_68 PF07498 Rho termination factor, N-terminal domain Aa4R_682 PF00929 Exonuclease Aa4R_687 PF01432 Peptidase family M3 Aa4R_711 PF00268 Ribonucleotide reductase, small chain Aa4R_72 PF00905 Penicillin binding protein transpeptidase domain Aa4R_72 PF03717 Penicillin-binding Protein dimerisation domain Aa4R_720 PF00128 Alpha amylase, catalytic domain Aa4R_722 PF00528 Binding-protein-dependent transport system inner membrane component Aa4R_722 PF14785 Maltose transport system permease protein MalF P2 domain Aa4R_724 PF17912 MalK OB fold domain Aa4R_724 PF00005 ABC transporter Aa4R_729 PF03454 MoeA C-terminal region (domain IV) Aa4R_729 PF00994 Probable molybdopterin binding domain Aa4R_729 PF03453 MoeA N-terminal region (domain I and II) Aa4R_731 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family Aa4R_739 PF01118 Semialdehyde dehydrogenase, NAD binding domain Aa4R_742 PF00005 ABC transporter Aa4R_747 PF03601 Conserved hypothetical protein 698 Aa4R_748 PF00905 Penicillin binding protein transpeptidase domain Aa4R_748 PF06832 Penicillin-Binding Protein C-terminus Family Aa4R_748 PF00912 Transglycosylase Aa4R_750 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Aa4R_754 PF01261 Xylose isomerase-like TIM barrel Aa4R_760 PF00881 Nitroreductase family Aa4R_767 PF04266 ASCH domain Aa4R_776 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Aa4R_776 PF00529 HlyD membrane-fusion protein of T1SS Aa4R_778 PF00575 S1 RNA binding domain Aa4R_778 PF00773 RNB domain Aa4R_778 PF08206 Ribonuclease B OB domain Aa4R_781 PF04055 Radical SAM superfamily Aa4R_784 PF03462 PCRF domain Aa4R_784 PF00472 RF-1 domain Aa4R_79 PF01406 tRNA synthetases class I (C) catalytic domain Aa4R_79 PF09190 DALR domain Aa4R_797 PF00586 AIR synthase related protein, N-terminal domain Aa4R_797 PF02769 AIR synthase related protein, C-terminal domain Aa4R_80 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Aa4R_802 PF08501 Shikimate dehydrogenase substrate binding domain Aa4R_804 PF03739 Lipopolysaccharide export system permease LptF/LptG Aa4R_807 PF03459 TOBE domain Aa4R_807 PF00005 ABC transporter Aa4R_810 PF03459 TOBE domain Aa4R_810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Aa4R_814 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Aa4R_814 PF01872 RibD C-terminal domain Aa4R_830 PF00209 Sodium:neurotransmitter symporter family Aa4R_839 PF04216 Protein involved in formate dehydrogenase formation Aa4R_863 PF01867 CRISPR associated protein Cas1 Aa4R_864 PF09827 CRISPR associated protein Cas2 Aa4R_867 PF00528 Binding-protein-dependent transport system inner membrane component Aa4R_886 PF09179 TilS substrate binding domain Aa4R_886 PF01171 PP-loop family Aa4R_886 PF11734 TilS substrate C-terminal domain Aa4R_90 PF00501 AMP-binding enzyme Aa4R_901 PF03406 Phage tail fibre repeat Aa4R_908 PF03606 C4-dicarboxylate anaerobic carrier Aa4R_909 PF17384 RimP C-terminal SH3 domain Aa4R_909 PF02576 RimP N-terminal domain Aa4R_912 PF01555 DNA methylase Aa4R_912 PF18273 Type III R-M EcoP15I C-terminal domain Aa4R_920 PF00579 tRNA synthetases class I (W and Y) Aa4R_920 PF01479 S4 domain Aa4R_921 PF17746 SfsA N-terminal OB domain Aa4R_921 PF03749 Sugar fermentation stimulation protein RE domain Aa4R_936 PF03966 Trm112p-like protein Aa4R_937 PF02606 Tetraacyldisaccharide-1-P 4'-kinase Aa4R_939 PF13567 Domain of unknown function (DUF4131) Aa4R_939 PF03772 Competence protein Aa4R_939 PF00753 Metallo-beta-lactamase superfamily Aa4R_940 PF01258 Prokaryotic dksA/traR C4-type zinc finger Aa4R_949 PF02446 4-alpha-glucanotransferase Aa4R_955 PF07992 Pyridine nucleotide-disulphide oxidoreductase Aa4R_955 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Aa4R_956 PF00881 Nitroreductase family Aa4R_957 PF01343 Peptidase family S49 Aa4R_959 PF01817 Chorismate mutase type II Aa4R_959 PF02153 Prephenate dehydrogenase Aa4R_960 PF02153 Prephenate dehydrogenase Aa4R_960 PF01817 Chorismate mutase type II Aa4R_963 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Aa4R_963 PF03466 LysR substrate binding domain Aa4R_97 PF00749 tRNA synthetases class I (E and Q), catalytic domain Aa4R_976 PF00484 Carbonic anhydrase Aa4R_985 PF01343 Peptidase family S49 Aa4R_985 PF08496 Peptidase family S49 N-terminal Aa4R_986 PF05736 OprF membrane domain Aa4R_986 PF00691 OmpA family Aa4R_990 PF01555 DNA methylase Aa4R_990 PF18273 Type III R-M EcoP15I C-terminal domain Aa4R_992 PF05198 Translation initiation factor IF-3, N-terminal domain Aa4R_992 PF00707 Translation initiation factor IF-3, C-terminal domain Aa4R_994 PF01632 Ribosomal protein L35 Aa4S_1 PF00308 Bacterial dnaA protein Aa4S_1 PF11638 DnaA N-terminal domain Aa4S_1 PF08299 Bacterial dnaA protein helix-turn-helix Aa4S_1008 PF00334 Nucleoside diphosphate kinase Aa4S_1020 PF00588 SpoU rRNA Methylase family Aa4S_1027 PF00485 Phosphoribulokinase / Uridine kinase family Aa4S_103 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain Aa4S_103 PF00437 Type II/IV secretion system protein Aa4S_1038 PF04399 Glutaredoxin 2, C terminal domain Aa4S_1038 PF13417 Glutathione S-transferase, N-terminal domain Aa4S_1039 PF02146 Sir2 family Aa4S_1046 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system Aa4S_1058 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system Aa4S_1064 PF05433 Glycine zipper 2TM domain Aa4S_1073 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Aa4S_1073 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Aa4S_1073 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Aa4S_1073 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Aa4S_1092 PF00265 Thymidine kinase Aa4S_1097 PF01807 CHC2 zinc finger Aa4S_1097 PF10410 DnaB-helicase binding domain of primase Aa4S_1097 PF08278 DNA primase DnaG DnaB-binding Aa4S_1097 PF08275 DNA primase catalytic core, N-terminal domain Aa4S_1099 PF05362 Lon protease (S16) C-terminal proteolytic domain Aa4S_1099 PF00004 ATPase family associated with various cellular activities (AAA) Aa4S_1099 PF02190 ATP-dependent protease La (LON) substrate-binding domain Aa4S_1103 PF03786 D-mannonate dehydratase (UxuA) Aa4S_1118 PF01906 Putative heavy-metal-binding Aa4S_1128 PF00696 Amino acid kinase family Aa4S_1128 PF00742 Homoserine dehydrogenase Aa4S_1128 PF13840 ACT domain Aa4S_1128 PF03447 Homoserine dehydrogenase, NAD binding domain Aa4S_1128 PF01842 ACT domain Aa4S_1132 PF00005 ABC transporter Aa4S_1132 PF00571 CBS domain Aa4S_1133 PF00528 Binding-protein-dependent transport system inner membrane component Aa4S_1135 PF06804 NlpB/DapX lipoprotein Aa4S_114 PF01207 Dihydrouridine synthase (Dus) Aa4S_1144 PF03741 Integral membrane protein TerC family Aa4S_1150 PF00535 Glycosyl transferase family 2 Aa4S_1179 PF01842 ACT domain Aa4S_1179 PF00551 Formyl transferase Aa4S_1183 PF00528 Binding-protein-dependent transport system inner membrane component Aa4S_1184 PF00005 ABC transporter Aa4S_1184 PF12857 TOBE-like domain Aa4S_1185 PF00005 ABC transporter Aa4S_1185 PF08402 TOBE domain Aa4S_1188 PF00672 HAMP domain Aa4S_1188 PF00512 His Kinase A (phospho-acceptor) domain Aa4S_1188 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Aa4S_1190 PF14532 Sigma-54 interaction domain Aa4S_1190 PF00072 Response regulator receiver domain Aa4S_1190 PF02954 Bacterial regulatory protein, Fis family Aa4S_1194 PF00849 RNA pseudouridylate synthase Aa4S_1200 PF02635 DsrE/DsrF-like family Aa4S_1202 PF13538 UvrD-like helicase C-terminal domain Aa4S_1210 PF00939 Sodium:sulfate symporter transmembrane region Aa4S_1211 PF04237 YjbR Aa4S_1212 PF00384 Molybdopterin oxidoreductase Aa4S_1212 PF18364 Molybdopterin oxidoreductase N-terminal domain Aa4S_1212 PF01568 Molydopterin dinucleotide binding domain Aa4S_1228 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Aa4S_1228 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Aa4S_1234 PF02653 Branched-chain amino acid transport system / permease component Aa4S_1247 PF03743 Bacterial conjugation TrbI-like protein Aa4S_1248 PF00437 Type II/IV secretion system protein Aa4S_125 PF13378 Enolase C-terminal domain-like Aa4S_1250 PF01791 DeoC/LacD family aldolase Aa4S_1251 PF03992 Antibiotic biosynthesis monooxygenase Aa4S_1252 PF00224 Pyruvate kinase, barrel domain Aa4S_1252 PF02887 Pyruvate kinase, alpha/beta domain Aa4S_1255 PF00290 Tryptophan synthase alpha chain Aa4S_1257 PF00106 short chain dehydrogenase Aa4S_1259 PF00593 TonB dependent receptor Aa4S_1259 PF07715 TonB-dependent Receptor Plug Domain Aa4S_1260 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit Aa4S_1266 PF00218 Indole-3-glycerol phosphate synthase Aa4S_1266 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Aa4S_1267 PF01381 Helix-turn-helix Aa4S_1269 PF02885 Glycosyl transferase family, helical bundle domain Aa4S_1269 PF00591 Glycosyl transferase family, a/b domain Aa4S_1271 PF00117 Glutamine amidotransferase class-I Aa4S_1277 PF03484 tRNA synthetase B5 domain Aa4S_1277 PF03483 B3/4 domain Aa4S_1277 PF01588 Putative tRNA binding domain Aa4S_1277 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain Aa4S_1277 PF03147 Ferredoxin-fold anticodon binding domain Aa4S_1279 PF00877 NlpC/P60 family Aa4S_1286 PF00005 ABC transporter Aa4S_1289 PF03459 TOBE domain Aa4S_129 PF00121 Triosephosphate isomerase Aa4S_1290 PF01497 Periplasmic binding protein Aa4S_1292 PF01032 FecCD transport family Aa4S_1296 PF00005 ABC transporter Aa4S_1301 PF01180 Dihydroorotate dehydrogenase Aa4S_1302 PF02811 PHP domain Aa4S_1303 PF08272 Topoisomerase I zinc-ribbon-like Aa4S_1303 PF01131 DNA topoisomerase Aa4S_1303 PF01751 Toprim domain Aa4S_1303 PF01396 Topoisomerase DNA binding C4 zinc finger Aa4S_1306 PF13545 Crp-like helix-turn-helix domain Aa4S_1306 PF00027 Cyclic nucleotide-binding domain Aa4S_131 PF04055 Radical SAM superfamily Aa4S_131 PF06969 HemN C-terminal domain Aa4S_1310 PF00263 Bacterial type II and III secretion system protein Aa4S_1310 PF03958 Bacterial type II/III secretion system short domain Aa4S_1314 PF00929 Exonuclease Aa4S_1314 PF08411 Exonuclease C-terminal Aa4S_1322 PF01386 Ribosomal L25p family Aa4S_1328 PF00128 Alpha amylase, catalytic domain Aa4S_1328 PF02806 Alpha amylase, C-terminal all-beta domain Aa4S_1328 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Aa4S_1345 PF13396 Phospholipase_D-nuclease N-terminal Aa4S_1345 PF13091 PLD-like domain Aa4S_1366 PF01555 DNA methylase Aa4S_1366 PF18273 Type III R-M EcoP15I C-terminal domain Aa4S_1373 PF01266 FAD dependent oxidoreductase Aa4S_1373 PF16901 C-terminal domain of alpha-glycerophosphate oxidase Aa4S_1375 PF04348 LppC putative lipoprotein Aa4S_1376 PF02021 Uncharacterised protein family UPF0102 Aa4S_1385 PF00356 Bacterial regulatory proteins, lacI family Aa4S_1385 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family Aa4S_1386 PF02698 DUF218 domain Aa4S_139 PF05025 RbsD / FucU transport protein family Aa4S_1390 PF04269 Protein of unknown function, DUF440 Aa4S_1391 PF00132 Bacterial transferase hexapeptide (six repeats) Aa4S_1391 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal Aa4S_1391 PF14602 Hexapeptide repeat of succinyl-transferase Aa4S_1394 PF01300 Telomere recombination Aa4S_14 PF01578 Cytochrome C assembly protein Aa4S_14 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal Aa4S_140 PF00005 ABC transporter Aa4S_1400 PF02817 e3 binding domain Aa4S_1400 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Aa4S_1400 PF00364 Biotin-requiring enzyme Aa4S_1404 PF00343 Carbohydrate phosphorylase Aa4S_1410 PF01515 Phosphate acetyl/butaryl transferase Aa4S_1410 PF07085 DRTGG domain Aa4S_1413 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) Aa4S_1420 PF02348 Cytidylyltransferase Aa4S_1427 PF08402 TOBE domain Aa4S_1427 PF00005 ABC transporter Aa4S_143 PF00294 pfkB family carbohydrate kinase Aa4S_1432 PF02233 NAD(P) transhydrogenase beta subunit Aa4S_1438 PF16198 tRNA pseudouridylate synthase B C-terminal domain Aa4S_1438 PF01509 TruB family pseudouridylate synthase (N terminal domain) Aa4S_1438 PF09157 Pseudouridine synthase II TruB, C-terminal Aa4S_1441 PF00271 Helicase conserved C-terminal domain Aa4S_1441 PF00176 SNF2 family N-terminal domain Aa4S_1444 PF00009 Elongation factor Tu GTP binding domain Aa4S_1444 PF11987 Translation-initiation factor 2 Aa4S_1444 PF04760 Translation initiation factor IF-2, N-terminal region Aa4S_1444 PF08364 Bacterial translation initiation factor IF-2 associated region Aa4S_1445 PF13184 NusA-like KH domain Aa4S_1445 PF08529 NusA N-terminal domain Aa4S_1445 PF00575 S1 RNA binding domain Aa4S_1450 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ Aa4S_1451 PF00117 Glutamine amidotransferase class-I Aa4S_1451 PF00958 GMP synthase C terminal domain Aa4S_1451 PF02540 NAD synthase Aa4S_1452 PF00589 Phage integrase family Aa4S_146 PF04488 Glycosyltransferase sugar-binding region containing DXD motif Aa4S_1474 PF07690 Major Facilitator Superfamily Aa4S_1478 PF16123 Hydroxyacylglutathione hydrolase C-terminus Aa4S_1478 PF00753 Metallo-beta-lactamase superfamily Aa4S_148 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Aa4S_148 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain Aa4S_1483 PF18381 YcaO cyclodehydratase C-terminal domain Aa4S_1483 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding Aa4S_1487 PF00005 ABC transporter Aa4S_149 PF00199 Catalase Aa4S_149 PF06628 Catalase-related immune-responsive Aa4S_1493 PF02463 RecF/RecN/SMC N terminal domain Aa4S_1498 PF03710 Glutamate-ammonia ligase adenylyltransferase Aa4S_1498 PF08335 GlnD PII-uridylyltransferase Aa4S_1501 PF00009 Elongation factor Tu GTP binding domain Aa4S_1501 PF03144 Elongation factor Tu domain 2 Aa4S_1501 PF16658 Class II release factor RF3, C-terminal domain Aa4S_1503 PF00764 Arginosuccinate synthase Aa4S_1504 PF10688 Bacterial inner membrane protein Aa4S_1506 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Aa4S_1506 PF00512 His Kinase A (phospho-acceptor) domain Aa4S_1506 PF08521 Two-component sensor kinase N-terminal Aa4S_151 PF14579 Helix-hairpin-helix motif Aa4S_151 PF02811 PHP domain Aa4S_151 PF01336 OB-fold nucleic acid binding domain Aa4S_151 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Aa4S_151 PF07733 Bacterial DNA polymerase III alpha NTPase domain Aa4S_1527 PF02508 Rnf-Nqr subunit, membrane protein Aa4S_1530 PF12838 4Fe-4S dicluster domain Aa4S_1530 PF10531 SLBB domain Aa4S_1530 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Aa4S_1530 PF13375 RnfC Barrel sandwich hybrid domain Aa4S_1532 PF02508 Rnf-Nqr subunit, membrane protein Aa4S_1537 PF01063 Amino-transferase class IV Aa4S_1539 PF01728 FtsJ-like methyltransferase Aa4S_1539 PF18125 RlmM ferredoxin-like domain Aa4S_154 PF13018 Extended Signal Peptide of Type V secretion system Aa4S_154 PF05662 Coiled stalk of trimeric autotransporter adhesin Aa4S_154 PF05658 Head domain of trimeric autotransporter adhesin Aa4S_154 PF03895 YadA-like membrane anchor domain Aa4S_1542 PF13180 PDZ domain Aa4S_1550 PF03739 Lipopolysaccharide export system permease LptF/LptG Aa4S_1561 PF00005 ABC transporter Aa4S_1565 PF10670 Domain of unknown function (DUF4198) Aa4S_1566 PF01048 Phosphorylase superfamily Aa4S_1568 PF01368 DHH family Aa4S_1568 PF02272 DHHA1 domain Aa4S_1568 PF17768 RecJ OB domain Aa4S_1570 PF03462 PCRF domain Aa4S_1570 PF00472 RF-1 domain Aa4S_1575 PF01784 NIF3 (NGG1p interacting factor 3) Aa4S_1582 PF07804 HipA-like C-terminal domain Aa4S_1582 PF13657 HipA N-terminal domain Aa4S_1586 PF08264 Anticodon-binding domain of tRNA Aa4S_1586 PF00133 tRNA synthetases class I (I, L, M and V) Aa4S_1586 PF10458 Valyl tRNA synthetase tRNA binding arm Aa4S_1591 PF10415 Fumarase C C-terminus Aa4S_1591 PF00206 Lyase Aa4S_1604 PF03611 PTS system sugar-specific permease component Aa4S_1617 PF04073 Aminoacyl-tRNA editing domain Aa4S_1618 PF01554 MatE Aa4S_1623 PF03449 Transcription elongation factor, N-terminal Aa4S_1623 PF01272 Transcription elongation factor, GreA/GreB, C-term Aa4S_1629 PF07148 Maltose operon periplasmic protein precursor (MalM) Aa4S_1634 PF00528 Binding-protein-dependent transport system inner membrane component Aa4S_1637 PF00528 Binding-protein-dependent transport system inner membrane component Aa4S_1640 PF12008 Type I restriction and modification enzyme - subunit R C terminal Aa4S_1640 PF18766 SWI2/SNF2 ATPase Aa4S_1640 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) Aa4S_1648 PF01113 Dihydrodipicolinate reductase, N-terminus Aa4S_1648 PF05173 Dihydrodipicolinate reductase, C-terminus Aa4S_1651 PF00586 AIR synthase related protein, N-terminal domain Aa4S_1651 PF02769 AIR synthase related protein, C-terminal domain Aa4S_1656 PF00772 DnaB-like helicase N terminal domain Aa4S_1656 PF03796 DnaB-like helicase C terminal domain Aa4S_1659 PF02687 FtsX-like permease family Aa4S_1659 PF12704 MacB-like periplasmic core domain Aa4S_1660 PF00005 ABC transporter Aa4S_1670 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 Aa4S_1677 PF17284 Spermidine synthase tetramerisation domain Aa4S_1680 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE Aa4S_1681 PF01476 LysM domain Aa4S_1681 PF01520 N-acetylmuramoyl-L-alanine amidase Aa4S_1695 PF00953 Glycosyl transferase family 4 Aa4S_17 PF13247 4Fe-4S dicluster domain Aa4S_1702 PF03239 Iron permease FTR1 family Aa4S_1708 PF00578 AhpC/TSA family Aa4S_1713 PF01609 Transposase DDE domain Aa4S_1719 PF00462 Glutaredoxin Aa4S_1721 PF01565 FAD binding domain Aa4S_1721 PF02913 FAD linked oxidases, C-terminal domain Aa4S_1721 PF13183 4Fe-4S dicluster domain Aa4S_1726 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase Aa4S_1733 PF01344 Kelch motif Aa4S_1734 PF00367 phosphotransferase system, EIIB Aa4S_1734 PF02378 Phosphotransferase system, EIIC Aa4S_1734 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 Aa4S_1737 PF03824 High-affinity nickel-transport protein Aa4S_175 PF07690 Major Facilitator Superfamily Aa4S_1752 PF03372 Endonuclease/Exonuclease/phosphatase family Aa4S_1753 PF12169 DNA polymerase III subunits gamma and tau domain III Aa4S_1753 PF12170 DNA polymerase III tau subunit V interacting with alpha Aa4S_1758 PF01264 Chorismate synthase Aa4S_1769 PF18073 Rubredoxin metal binding domain Aa4S_1772 PF00575 S1 RNA binding domain Aa4S_1773 PF02224 Cytidylate kinase Aa4S_1776 PF05193 Peptidase M16 inactive domain Aa4S_1776 PF00675 Insulinase (Peptidase family M16) Aa4S_1777 PF05437 Branched-chain amino acid transport protein (AzlD) Aa4S_1783 PF00176 SNF2 family N-terminal domain Aa4S_1783 PF00271 Helicase conserved C-terminal domain Aa4S_1799 PF02780 Transketolase, C-terminal domain Aa4S_1799 PF02779 Transketolase, pyrimidine binding domain Aa4S_1810 PF00266 Aminotransferase class-V Aa4S_1812 PF01467 Cytidylyltransferase-like Aa4S_1812 PF00294 pfkB family carbohydrate kinase Aa4S_1817 PF01145 SPFH domain / Band 7 family Aa4S_1817 PF16200 C-terminal region of band_7 Aa4S_1823 PF01612 3'-5' exonuclease Aa4S_1823 PF00570 HRDC domain Aa4S_1824 PF13193 AMP-binding enzyme C-terminal domain Aa4S_1824 PF00501 AMP-binding enzyme Aa4S_1825 PF03843 Outer membrane lipoprotein Slp family Aa4S_1826 PF00814 Glycoprotease family Aa4S_1832 PF00005 ABC transporter Aa4S_1832 PF00664 ABC transporter transmembrane region Aa4S_1837 PF07273 Protein of unknown function (DUF1439) Aa4S_1851 PF00535 Glycosyl transferase family 2 Aa4S_1871 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system Aa4S_1872 PF02698 DUF218 domain Aa4S_1874 PF00580 UvrD/REP helicase N-terminal domain Aa4S_1874 PF13361 UvrD-like helicase C-terminal domain Aa4S_1875 PF02447 GntP family permease Aa4S_1877 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family Aa4S_1877 PF00356 Bacterial regulatory proteins, lacI family Aa4S_1881 PF00384 Molybdopterin oxidoreductase Aa4S_1881 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Aa4S_1881 PF01568 Molydopterin dinucleotide binding domain Aa4S_1886 PF12798 4Fe-4S binding domain Aa4S_1886 PF00037 4Fe-4S binding domain Aa4S_1887 PF00361 Proton-conducting membrane transporter Aa4S_1888 PF00146 NADH dehydrogenase Aa4S_1889 PF00361 Proton-conducting membrane transporter Aa4S_1889 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Aa4S_1901 PF02817 e3 binding domain Aa4S_1901 PF00364 Biotin-requiring enzyme Aa4S_1901 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Aa4S_1902 PF02779 Transketolase, pyrimidine binding domain Aa4S_1902 PF16870 2-oxoglutarate dehydrogenase C-terminal Aa4S_1902 PF16078 2-oxoglutarate dehydrogenase N-terminus Aa4S_1902 PF00676 Dehydrogenase E1 component Aa4S_194 PF06738 Putative threonine/serine exporter Aa4S_1950 PF01702 Queuine tRNA-ribosyltransferase Aa4S_1955 PF07715 TonB-dependent Receptor Plug Domain Aa4S_1955 PF00593 TonB dependent receptor Aa4S_1959 PF00005 ABC transporter Aa4S_1988 PF17344 Family of unknown function (DUF5374) Aa4S_1989 PF10833 Protein of unknown function (DUF2572) Aa4S_2 PF00712 DNA polymerase III beta subunit, N-terminal domain Aa4S_2 PF02767 DNA polymerase III beta subunit, central domain Aa4S_2 PF02768 DNA polymerase III beta subunit, C-terminal domain Aa4S_200 PF09115 DNA polymerase III, delta subunit, C terminal Aa4S_201 PF02223 Thymidylate kinase Aa4S_2012 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family Aa4S_2016 PF00593 TonB dependent receptor Aa4S_2016 PF07715 TonB-dependent Receptor Plug Domain Aa4S_2030 PF00892 EamA-like transporter family Aa4S_2031 PF01018 GTP1/OBG Aa4S_2031 PF01926 50S ribosome-binding GTPase Aa4S_2047 PF00849 RNA pseudouridylate synthase Aa4S_2047 PF01479 S4 domain Aa4S_205 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Aa4S_205 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Aa4S_2057 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain Aa4S_206 PF17042 Nucleotide-binding C-terminal domain Aa4S_206 PF07005 Sugar-binding N-terminal domain Aa4S_2067 PF03023 Lipid II flippase MurJ Aa4S_2070 PF08264 Anticodon-binding domain of tRNA Aa4S_2070 PF00133 tRNA synthetases class I (I, L, M and V) Aa4S_2070 PF06827 Zinc finger found in FPG and IleRS Aa4S_2075 PF12832 MFS_1 like family Aa4S_2077 PF03807 NADP oxidoreductase coenzyme F420-dependent Aa4S_2077 PF14748 Pyrroline-5-carboxylate reductase dimerisation Aa4S_2080 PF08525 Opacity-associated protein A N-terminal motif Aa4S_2080 PF04225 Opacity-associated protein A LysM-like domain Aa4S_2091 PF00892 EamA-like transporter family Aa4S_2092 PF04055 Radical SAM superfamily Aa4S_2094 PF01226 Formate/nitrite transporter Aa4S_2101 PF16916 Dimerisation domain of Zinc Transporter Aa4S_2101 PF01545 Cation efflux family Aa4S_2107 PF00717 Peptidase S24-like Aa4S_2107 PF10502 Signal peptidase, peptidase S26 Aa4S_2110 PF01926 50S ribosome-binding GTPase Aa4S_2110 PF10396 GTP-binding protein TrmE N-terminus Aa4S_2110 PF12631 MnmE helical domain Aa4S_216 PF04445 Putative SAM-dependent methyltransferase Aa4S_224 PF00294 pfkB family carbohydrate kinase Aa4S_229 PF02525 Flavodoxin-like fold Aa4S_235 PF00687 Ribosomal protein L1p/L10e family Aa4S_237 PF00466 Ribosomal protein L10 Aa4S_239 PF04561 RNA polymerase Rpb2, domain 2 Aa4S_239 PF04565 RNA polymerase Rpb2, domain 3 Aa4S_239 PF00562 RNA polymerase Rpb2, domain 6 Aa4S_239 PF04560 RNA polymerase Rpb2, domain 7 Aa4S_239 PF10385 RNA polymerase beta subunit external 1 domain Aa4S_239 PF04563 RNA polymerase beta subunit Aa4S_248 PF00181 Ribosomal Proteins L2, RNA binding domain Aa4S_248 PF03947 Ribosomal Proteins L2, C-terminal domain Aa4S_257 PF02667 Short chain fatty acid transporter Aa4S_264 PF01207 Dihydrouridine synthase (Dus) Aa4S_267 PF01048 Phosphorylase superfamily Aa4S_269 PF03960 ArsC family Aa4S_270 PF17347 Family of unknown function (DUF5377) Aa4S_274 PF04325 Protein of unknown function (DUF465) Aa4S_278 PF01741 Large-conductance mechanosensitive channel, MscL Aa4S_280 PF01189 16S rRNA methyltransferase RsmB/F Aa4S_280 PF01029 NusB family Aa4S_288 PF00588 SpoU rRNA Methylase family Aa4S_292 PF01078 Magnesium chelatase, subunit ChlI Aa4S_292 PF13335 Magnesium chelatase, subunit ChlI C-terminal Aa4S_311 PF00665 Integrase core domain Aa4S_315 PF01551 Peptidase family M23 Aa4S_327 PF01435 Peptidase family M48 Aa4S_33 PF07690 Major Facilitator Superfamily Aa4S_330 PF02881 SRP54-type protein, helical bundle domain Aa4S_330 PF00448 SRP54-type protein, GTPase domain Aa4S_358 PF00580 UvrD/REP helicase N-terminal domain Aa4S_358 PF13361 UvrD-like helicase C-terminal domain Aa4S_36 PF01515 Phosphate acetyl/butaryl transferase Aa4S_36 PF03949 Malic enzyme, NAD binding domain Aa4S_36 PF00390 Malic enzyme, N-terminal domain Aa4S_361 PF01367 5'-3' exonuclease, C-terminal SAM fold Aa4S_361 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain Aa4S_361 PF01612 3'-5' exonuclease Aa4S_361 PF00476 DNA polymerase family A Aa4S_367 PF01370 NAD dependent epimerase/dehydratase family Aa4S_374 PF12800 4Fe-4S binding domain Aa4S_374 PF12838 4Fe-4S dicluster domain Aa4S_385 PF03764 Elongation factor G, domain IV Aa4S_385 PF00009 Elongation factor Tu GTP binding domain Aa4S_385 PF00679 Elongation factor G C-terminus Aa4S_385 PF14492 Elongation Factor G, domain II Aa4S_385 PF03144 Elongation factor Tu domain 2 Aa4S_39 PF04228 Putative neutral zinc metallopeptidase Aa4S_392 PF01300 Telomere recombination Aa4S_398 PF01694 Rhomboid family Aa4S_406 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase Aa4S_406 PF13288 DXP reductoisomerase C-terminal domain Aa4S_406 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain Aa4S_411 PF03938 Outer membrane protein (OmpH-like) Aa4S_416 PF01351 Ribonuclease HII Aa4S_417 PF03600 Citrate transporter Aa4S_417 PF02080 TrkA-C domain Aa4S_418 PF01066 CDP-alcohol phosphatidyltransferase Aa4S_429 PF00005 ABC transporter Aa4S_429 PF12848 ABC transporter Aa4S_432 PF13617 YnbE-like lipoprotein Aa4S_433 PF13356 Arm DNA-binding domain Aa4S_433 PF00589 Phage integrase family Aa4S_449 PF01791 DeoC/LacD family aldolase Aa4S_453 PF03702 Anhydro-N-acetylmuramic acid kinase Aa4S_460 PF00497 Bacterial extracellular solute-binding proteins, family 3 Aa4S_461 PF00528 Binding-protein-dependent transport system inner membrane component Aa4S_465 PF02635 DsrE/DsrF-like family Aa4S_469 PF00462 Glutaredoxin Aa4S_469 PF08534 Redoxin Aa4S_472 PF00005 ABC transporter Aa4S_472 PF00664 ABC transporter transmembrane region Aa4S_473 PF00005 ABC transporter Aa4S_473 PF00664 ABC transporter transmembrane region Aa4S_476 PF02556 Preprotein translocase subunit SecB Aa4S_483 PF05368 NmrA-like family Aa4S_486 PF03899 ATP synthase I chain Aa4S_487 PF00119 ATP synthase A chain Aa4S_491 PF00306 ATP synthase alpha/beta chain, C terminal domain Aa4S_491 PF02874 ATP synthase alpha/beta family, beta-barrel domain Aa4S_491 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Aa4S_492 PF00231 ATP synthase Aa4S_493 PF02874 ATP synthase alpha/beta family, beta-barrel domain Aa4S_493 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Aa4S_502 PF07690 Major Facilitator Superfamily Aa4S_506 PF02653 Branched-chain amino acid transport system / permease component Aa4S_507 PF00005 ABC transporter Aa4S_510 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Aa4S_510 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Aa4S_515 PF13091 PLD-like domain Aa4S_517 PF00037 4Fe-4S binding domain Aa4S_519 PF00162 Phosphoglycerate kinase Aa4S_520 PF01116 Fructose-bisphosphate aldolase class-II Aa4S_522 PF12146 Serine aminopeptidase, S33 Aa4S_53 PF02773 S-adenosylmethionine synthetase, C-terminal domain Aa4S_53 PF02772 S-adenosylmethionine synthetase, central domain Aa4S_53 PF00438 S-adenosylmethionine synthetase, N-terminal domain Aa4S_530 PF00834 Ribulose-phosphate 3 epimerase family Aa4S_536 PF09335 SNARE associated Golgi protein Aa4S_540 PF00535 Glycosyl transferase family 2 Aa4S_542 PF01467 Cytidylyltransferase-like Aa4S_555 PF03009 Glycerophosphoryl diester phosphodiesterase family Aa4S_558 PF00588 SpoU rRNA Methylase family Aa4S_558 PF08032 RNA 2'-O ribose methyltransferase substrate binding Aa4S_568 PF00557 Metallopeptidase family M24 Aa4S_568 PF05195 Aminopeptidase P, N-terminal domain Aa4S_57 PF00710 Asparaginase, N-terminal Aa4S_57 PF17763 Glutaminase/Asparaginase C-terminal domain Aa4S_576 PF00884 Sulfatase Aa4S_577 PF00881 Nitroreductase family Aa4S_583 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Aa4S_586 PF18319 PriA DNA helicase Cys-rich region (CRR) domain Aa4S_586 PF18074 Primosomal protein N C-terminal domain Aa4S_586 PF00271 Helicase conserved C-terminal domain Aa4S_586 PF00270 DEAD/DEAH box helicase Aa4S_586 PF17764 3′ DNA-binding domain (3′BD) Aa4S_591 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) Aa4S_598 PF02441 Flavoprotein Aa4S_598 PF04127 DNA / pantothenate metabolism flavoprotein Aa4S_604 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ Aa4S_605 PF17092 Penicillin-binding protein OB-like domain Aa4S_605 PF00912 Transglycosylase Aa4S_605 PF00905 Penicillin binding protein transpeptidase domain Aa4S_610 PF03958 Bacterial type II/III secretion system short domain Aa4S_610 PF00263 Bacterial type II and III secretion system protein Aa4S_612 PF01761 3-dehydroquinate synthase Aa4S_614 PF00436 Single-strand binding protein family Aa4S_62 PF13393 Histidyl-tRNA synthetase Aa4S_62 PF03129 Anticodon binding domain Aa4S_620 PF05258 Dna[CI] antecedent, DciA Aa4S_622 PF01043 SecA preprotein cross-linking domain Aa4S_622 PF07517 SecA DEAD-like domain Aa4S_622 PF02810 SEC-C motif Aa4S_622 PF07516 SecA Wing and Scaffold domain Aa4S_628 PF10786 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) Aa4S_630 PF08780 Nucleotidyltransferase substrate binding protein like Aa4S_634 PF00156 Phosphoribosyl transferase domain Aa4S_637 PF08328 Adenylosuccinate lyase C-terminal Aa4S_637 PF00206 Lyase Aa4S_640 PF13411 MerR HTH family regulatory protein Aa4S_652 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Aa4S_652 PF01568 Molydopterin dinucleotide binding domain Aa4S_652 PF00384 Molybdopterin oxidoreductase Aa4S_654 PF04976 DMSO reductase anchor subunit (DmsC) Aa4S_66 PF00860 Permease family Aa4S_667 PF01430 Hsp33 protein Aa4S_671 PF12833 Helix-turn-helix domain Aa4S_671 PF12852 Cupin Aa4S_673 PF03169 OPT oligopeptide transporter protein Aa4S_675 PF00459 Inositol monophosphatase family Aa4S_676 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain Aa4S_676 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain Aa4S_684 PF00109 Beta-ketoacyl synthase, N-terminal domain Aa4S_684 PF02801 Beta-ketoacyl synthase, C-terminal domain Aa4S_69 PF02655 ATP-grasp domain Aa4S_69 PF18419 ATP-grasp-like domain Aa4S_69 PF04262 Glutamate-cysteine ligase Aa4S_698 PF00550 Phosphopantetheine attachment site Aa4S_71 PF00884 Sulfatase Aa4S_710 PF10531 SLBB domain Aa4S_714 PF01106 NifU-like domain Aa4S_714 PF01521 Iron-sulphur cluster biosynthesis Aa4S_720 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 Aa4S_720 PF00467 KOW motif Aa4S_721 PF00673 ribosomal L5P family C-terminus Aa4S_721 PF00281 Ribosomal protein L5 Aa4S_729 PF00344 SecY translocase Aa4S_733 PF00163 Ribosomal protein S4/S9 N-terminal domain Aa4S_733 PF01479 S4 domain Aa4S_737 PF01797 Transposase IS200 like Aa4S_743 PF02386 Cation transport protein Aa4S_747 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) Aa4S_753 PF00206 Lyase Aa4S_753 PF10415 Fumarase C C-terminus Aa4S_76 PF05675 Protein of unknown function (DUF817) Aa4S_761 PF02824 TGS domain Aa4S_761 PF13291 ACT domain Aa4S_761 PF04607 Region found in RelA / SpoT proteins Aa4S_761 PF13328 HD domain Aa4S_767 PF01571 Aminomethyltransferase folate-binding domain Aa4S_77 PF00403 Heavy-metal-associated domain Aa4S_775 PF00005 ABC transporter Aa4S_783 PF03923 Uncharacterized lipoprotein Aa4S_788 PF03116 NQR2, RnfD, RnfE family Aa4S_806 PF02272 DHHA1 domain Aa4S_806 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Aa4S_806 PF01411 tRNA synthetases class II (A) Aa4S_810 PF00884 Sulfatase Aa4S_810 PF11893 Domain of unknown function (DUF3413) Aa4S_821 PF05872 Bacterial protein of unknown function (DUF853) Aa4S_834 PF00216 Bacterial DNA-binding protein Aa4S_835 PF04222 Protein of unknown function (DUF416) Aa4S_837 PF00293 NUDIX domain Aa4S_837 PF09297 NADH pyrophosphatase zinc ribbon domain Aa4S_842 PF04357 TamB, inner membrane protein subunit of TAM complex Aa4S_848 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase Aa4S_852 PF08281 Sigma-70, region 4 Aa4S_852 PF04542 Sigma-70 region 2 Aa4S_854 PF01272 Transcription elongation factor, GreA/GreB, C-term Aa4S_854 PF03449 Transcription elongation factor, N-terminal Aa4S_858 PF00939 Sodium:sulfate symporter transmembrane region Aa4S_86 PF01040 UbiA prenyltransferase family Aa4S_867 PF18053 DNA gyrase B subunit insert domain Aa4S_867 PF00986 DNA gyrase B subunit, carboxyl terminus Aa4S_867 PF00204 DNA gyrase B Aa4S_867 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Aa4S_867 PF01751 Toprim domain Aa4S_874 PF04453 LPS transport system D Aa4S_874 PF03968 OstA-like protein Aa4S_876 PF01546 Peptidase family M20/M25/M40 Aa4S_876 PF07687 Peptidase dimerisation domain Aa4S_88 PF00939 Sodium:sulfate symporter transmembrane region Aa4S_889 PF02308 MgtC family Aa4S_904 PF13629 Pilus formation protein N terminal region Aa4S_904 PF04972 BON domain Aa4S_904 PF00263 Bacterial type II and III secretion system protein Aa4S_909 PF02130 Uncharacterized protein family UPF0054 Aa4S_913 PF17757 UvrB interaction domain Aa4S_913 PF03461 TRCF domain Aa4S_913 PF00271 Helicase conserved C-terminal domain Aa4S_913 PF02559 CarD-like/TRCF domain Aa4S_913 PF00270 DEAD/DEAH box helicase Aa4S_915 PF00005 ABC transporter Aa4S_924 PF00905 Penicillin binding protein transpeptidase domain Aa4S_924 PF03717 Penicillin-binding Protein dimerisation domain Aa4S_929 PF01098 Cell cycle protein Aa4S_935 PF00091 Tubulin/FtsZ family, GTPase domain Aa4S_935 PF12327 FtsZ family, C-terminal domain Aa4S_937 PF00800 Prephenate dehydratase Aa4S_937 PF01817 Chorismate mutase type II Aa4S_942 PF00293 NUDIX domain Aa4S_95 PF00665 Integrase core domain Aa4S_954 PF13183 4Fe-4S dicluster domain Aa4S_954 PF13085 2Fe-2S iron-sulfur cluster binding domain Aa4S_957 PF00152 tRNA synthetases class II (D, K and N) Aa4S_963 PF02575 YbaB/EbfC DNA-binding family Aa4S_965 PF01751 Toprim domain Aa4S_965 PF01131 DNA topoisomerase Aa4S_983 PF01266 FAD dependent oxidoreductase Aa4S_983 PF05430 S-adenosyl-L-methionine-dependent methyltransferase Aa4S_986 PF02653 Branched-chain amino acid transport system / permease component Aa4S_988 PF00005 ABC transporter Aa4S_992 PF10509 Galactokinase galactose-binding signature Aa4S_992 PF08544 GHMP kinases C terminal Aa4S_992 PF00288 GHMP kinases N terminal domain Aa5R_1 PF00308 Bacterial dnaA protein Aa5R_1 PF11638 DnaA N-terminal domain Aa5R_1 PF08299 Bacterial dnaA protein helix-turn-helix Aa5R_10 PF00390 Malic enzyme, N-terminal domain Aa5R_10 PF03949 Malic enzyme, NAD binding domain Aa5R_1000 PF00005 ABC transporter Aa5R_1023 PF10609 NUBPL iron-transfer P-loop NTPase Aa5R_1024 PF09334 tRNA synthetases class I (M) Aa5R_1024 PF01588 Putative tRNA binding domain Aa5R_1026 PF00111 2Fe-2S iron-sulfur cluster binding domain Aa5R_1027 PF00012 Hsp70 protein Aa5R_103 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain Aa5R_103 PF00013 KH domain Aa5R_103 PF00575 S1 RNA binding domain Aa5R_103 PF01138 3' exoribonuclease family, domain 1 Aa5R_103 PF03725 3' exoribonuclease family, domain 2 Aa5R_1030 PF01592 NifU-like N terminal domain Aa5R_1034 PF00459 Inositol monophosphatase family Aa5R_1044 PF01926 50S ribosome-binding GTPase Aa5R_1044 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal Aa5R_105 PF01510 N-acetylmuramoyl-L-alanine amidase Aa5R_107 PF00437 Type II/IV secretion system protein Aa5R_107 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain Aa5R_1111 PF00145 C-5 cytosine-specific DNA methylase Aa5R_1111 PF01381 Helix-turn-helix Aa5R_1125 PF03796 DnaB-like helicase C terminal domain Aa5R_1125 PF00772 DnaB-like helicase N terminal domain Aa5R_1162 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Aa5R_1164 PF05128 Domain of unknown function (DUF697) Aa5R_1165 PF00158 Sigma-54 interaction domain Aa5R_1165 PF18024 Helix-turn-helix domain Aa5R_1169 PF01715 IPP transferase Aa5R_117 PF01207 Dihydrouridine synthase (Dus) Aa5R_1170 PF01119 DNA mismatch repair protein, C-terminal domain Aa5R_1170 PF08676 MutL C terminal dimerisation domain Aa5R_1171 PF01476 LysM domain Aa5R_1171 PF01520 N-acetylmuramoyl-L-alanine amidase Aa5R_1175 PF17284 Spermidine synthase tetramerisation domain Aa5R_1178 PF00929 Exonuclease Aa5R_118 PF01207 Dihydrouridine synthase (Dus) Aa5R_1180 PF00381 PTS HPr component phosphorylation site Aa5R_1181 PF00391 PEP-utilising enzyme, mobile domain Aa5R_1181 PF05524 PEP-utilising enzyme, N-terminal Aa5R_1181 PF02896 PEP-utilising enzyme, TIM barrel domain Aa5R_1186 PF01063 Amino-transferase class IV Aa5R_1191 PF12704 MacB-like periplasmic core domain Aa5R_1191 PF02687 FtsX-like permease family Aa5R_1194 PF00793 DAHP synthetase I family Aa5R_1199 PF00885 6,7-dimethyl-8-ribityllumazine synthase Aa5R_1201 PF00586 AIR synthase related protein, N-terminal domain Aa5R_1201 PF02769 AIR synthase related protein, C-terminal domain Aa5R_1203 PF01810 LysE type translocator Aa5R_121 PF00474 Sodium:solute symporter family Aa5R_1218 PF13416 Bacterial extracellular solute-binding protein Aa5R_1230 PF00677 Lumazine binding domain Aa5R_1239 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain Aa5R_1239 PF01835 MG2 domain Aa5R_1239 PF00207 Alpha-2-macroglobulin family Aa5R_1239 PF07703 Alpha-2-macroglobulin bait region domain Aa5R_1239 PF11974 Bacterial alpha-2-macroglobulin MG3 domain Aa5R_1239 PF17962 Bacterial macroglobulin domain 6 Aa5R_1239 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain Aa5R_1242 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family Aa5R_1282 PF01048 Phosphorylase superfamily Aa5R_1300 PF03459 TOBE domain Aa5R_1300 PF00005 ABC transporter Aa5R_1311 PF01063 Amino-transferase class IV Aa5R_1315 PF08338 Domain of unknown function (DUF1731) Aa5R_1315 PF01370 NAD dependent epimerase/dehydratase family Aa5R_1317 PF04060 Putative Fe-S cluster Aa5R_1329 PF01032 FecCD transport family Aa5R_1332 PF04216 Protein involved in formate dehydrogenase formation Aa5R_1334 PF04076 Bacterial OB fold (BOF) protein Aa5R_1335 PF00486 Transcriptional regulatory protein, C terminal Aa5R_1335 PF00072 Response regulator receiver domain Aa5R_1343 PF01370 NAD dependent epimerase/dehydratase family Aa5R_1356 PF01867 CRISPR associated protein Cas1 Aa5R_1368 PF02378 Phosphotransferase system, EIIC Aa5R_1368 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 Aa5R_1368 PF00367 phosphotransferase system, EIIB Aa5R_1371 PF01488 Shikimate / quinate 5-dehydrogenase Aa5R_1371 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain Aa5R_1371 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain Aa5R_1377 PF05656 Protein of unknown function (DUF805) Aa5R_1378 PF00860 Permease family Aa5R_1381 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit Aa5R_1394 PF02824 TGS domain Aa5R_1394 PF04607 Region found in RelA / SpoT proteins Aa5R_1394 PF13328 HD domain Aa5R_1394 PF13291 ACT domain Aa5R_1401 PF02540 NAD synthase Aa5R_1401 PF00958 GMP synthase C terminal domain Aa5R_1401 PF00117 Glutamine amidotransferase class-I Aa5R_1407 PF08529 NusA N-terminal domain Aa5R_1407 PF00575 S1 RNA binding domain Aa5R_1407 PF13184 NusA-like KH domain Aa5R_1410 PF00271 Helicase conserved C-terminal domain Aa5R_1410 PF00176 SNF2 family N-terminal domain Aa5R_1412 PF01509 TruB family pseudouridylate synthase (N terminal domain) Aa5R_1412 PF09157 Pseudouridine synthase II TruB, C-terminal Aa5R_1412 PF16198 tRNA pseudouridylate synthase B C-terminal domain Aa5R_1416 PF17746 SfsA N-terminal OB domain Aa5R_1416 PF03749 Sugar fermentation stimulation protein RE domain Aa5R_1417 PF01262 Alanine dehydrogenase/PNT, C-terminal domain Aa5R_1417 PF05222 Alanine dehydrogenase/PNT, N-terminal domain Aa5R_1417 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch Aa5R_1421 PF12728 Helix-turn-helix domain Aa5R_1421 PF02661 Fic/DOC family Aa5R_1422 PF02769 AIR synthase related protein, C-terminal domain Aa5R_1422 PF00586 AIR synthase related protein, N-terminal domain Aa5R_1431 PF02606 Tetraacyldisaccharide-1-P 4'-kinase Aa5R_1433 PF00753 Metallo-beta-lactamase superfamily Aa5R_1433 PF03772 Competence protein Aa5R_1433 PF13567 Domain of unknown function (DUF4131) Aa5R_145 PF00005 ABC transporter Aa5R_1454 PF02153 Prephenate dehydrogenase Aa5R_1454 PF01817 Chorismate mutase type II Aa5R_1456 PF01300 Telomere recombination Aa5R_1469 PF02683 Cytochrome C biogenesis protein transmembrane region Aa5R_147 PF13407 Periplasmic binding protein domain Aa5R_1484 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Aa5R_1484 PF02824 TGS domain Aa5R_1484 PF03129 Anticodon binding domain Aa5R_1484 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Aa5R_1499 PF08240 Alcohol dehydrogenase GroES-like domain Aa5R_1499 PF00107 Zinc-binding dehydrogenase Aa5R_1500 PF00455 DeoR C terminal sensor domain Aa5R_1500 PF08220 DeoR-like helix-turn-helix domain Aa5R_1509 PF00849 RNA pseudouridylate synthase Aa5R_1511 PF08274 PhnA Zinc-Ribbon Aa5R_1511 PF03831 PhnA domain Aa5R_1528 PF00534 Glycosyl transferases group 1 Aa5R_1528 PF08323 Starch synthase catalytic domain Aa5R_1530 PF09335 SNARE associated Golgi protein Aa5R_1550 PF10670 Domain of unknown function (DUF4198) Aa5R_1554 PF01433 Peptidase family M1 domain Aa5R_1554 PF17432 Domain of unknown function (DUF3458_C) ARM repeats Aa5R_1554 PF11940 Domain of unknown function (DUF3458) Ig-like fold Aa5R_1555 PF00155 Aminotransferase class I and II Aa5R_1586 PF14552 Tautomerase enzyme Aa5R_1592 PF01455 HupF/HypC family Aa5R_1604 PF02914 Bacteriophage Mu transposase Aa5R_1604 PF09039 Mu DNA binding, I gamma subdomain Aa5R_1604 PF02316 Mu DNA-binding domain Aa5R_1604 PF09299 Mu transposase, C-terminal Aa5R_1609 PF07715 TonB-dependent Receptor Plug Domain Aa5R_1609 PF00593 TonB dependent receptor Aa5R_1619 PF01791 DeoC/LacD family aldolase Aa5R_1626 PF04198 Putative sugar-binding domain Aa5R_1627 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Aa5R_1627 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Aa5R_1637 PF01933 Uncharacterised protein family UPF0052 Aa5R_164 PF01026 TatD related DNase Aa5R_1645 PF00939 Sodium:sulfate symporter transmembrane region Aa5R_1654 PF12705 PD-(D/E)XK nuclease superfamily Aa5R_1654 PF13361 UvrD-like helicase C-terminal domain Aa5R_1654 PF00580 UvrD/REP helicase N-terminal domain Aa5R_1656 PF07977 FabA-like domain Aa5R_1657 PF13654 AAA domain Aa5R_1657 PF05362 Lon protease (S16) C-terminal proteolytic domain Aa5R_1665 PF00072 Response regulator receiver domain Aa5R_1665 PF02954 Bacterial regulatory protein, Fis family Aa5R_1665 PF14532 Sigma-54 interaction domain Aa5R_1671 PF06480 FtsH Extracellular Aa5R_1671 PF01434 Peptidase family M41 Aa5R_1671 PF17862 AAA+ lid domain Aa5R_1671 PF00004 ATPase family associated with various cellular activities (AAA) Aa5R_1677 PF01177 Asp/Glu/Hydantoin racemase Aa5R_1682 PF00625 Guanylate kinase Aa5R_1692 PF03968 OstA-like protein Aa5R_1694 PF00005 ABC transporter Aa5R_1700 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Aa5R_1707 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain Aa5R_1707 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Aa5R_1708 PF02976 DNA mismatch repair enzyme MutH Aa5R_171 PF04359 Protein of unknown function (DUF493) Aa5R_1714 PF00679 Elongation factor G C-terminus Aa5R_1714 PF00009 Elongation factor Tu GTP binding domain Aa5R_1714 PF03144 Elongation factor Tu domain 2 Aa5R_1744 PF00294 pfkB family carbohydrate kinase Aa5R_1748 PF01055 Glycosyl hydrolases family 31 Aa5R_1748 PF13802 Galactose mutarotase-like Aa5R_1748 PF17137 Domain of unknown function (DUF5110) Aa5R_1748 PF16338 Domain of unknown function (DUF4968) Aa5R_1753 PF01740 STAS domain Aa5R_1753 PF00916 Sulfate permease family Aa5R_1767 PF03167 Uracil DNA glycosylase superfamily Aa5R_1769 PF01195 Peptidyl-tRNA hydrolase Aa5R_1784 PF00578 AhpC/TSA family Aa5R_1787 PF13419 Haloacid dehalogenase-like hydrolase Aa5R_179 PF07498 Rho termination factor, N-terminal domain Aa5R_179 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Aa5R_179 PF07497 Rho termination factor, RNA-binding domain Aa5R_1796 PF02913 FAD linked oxidases, C-terminal domain Aa5R_1796 PF01565 FAD binding domain Aa5R_1796 PF13183 4Fe-4S dicluster domain Aa5R_180 PF07690 Major Facilitator Superfamily Aa5R_1805 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase Aa5R_1806 PF03480 Bacterial extracellular solute-binding protein, family 7 Aa5R_1816 PF05662 Coiled stalk of trimeric autotransporter adhesin Aa5R_1816 PF05658 Head domain of trimeric autotransporter adhesin Aa5R_1816 PF03895 YadA-like membrane anchor domain Aa5R_1822 PF08238 Sel1 repeat Aa5R_1833 PF03411 Penicillin-insensitive murein endopeptidase Aa5R_1835 PF00924 Mechanosensitive ion channel Aa5R_1835 PF12795 Mechanosensitive ion channel porin domain Aa5R_1835 PF12794 Mechanosensitive ion channel inner membrane domain 1 Aa5R_1852 PF00675 Insulinase (Peptidase family M16) Aa5R_1852 PF05193 Peptidase M16 inactive domain Aa5R_1862 PF04358 DsrC like protein Aa5R_1866 PF00950 ABC 3 transport family Aa5R_187 PF02504 Fatty acid synthesis protein Aa5R_1873 PF05175 Methyltransferase small domain Aa5R_1881 PF01966 HD domain Aa5R_1881 PF13286 Phosphohydrolase-associated domain Aa5R_1887 PF01467 Cytidylyltransferase-like Aa5R_1887 PF00294 pfkB family carbohydrate kinase Aa5R_1888 PF03279 Bacterial lipid A biosynthesis acyltransferase Aa5R_1897 PF00034 Cytochrome c Aa5R_1897 PF03150 Di-haem cytochrome c peroxidase Aa5R_1897 PF14376 Haem-binding domain Aa5R_1902 PF13307 Helicase C-terminal domain Aa5R_1902 PF06733 DEAD_2 Aa5R_1903 PF01263 Aldose 1-epimerase Aa5R_1905 PF07992 Pyridine nucleotide-disulphide oxidoreductase Aa5R_1907 PF00664 ABC transporter transmembrane region Aa5R_1907 PF00005 ABC transporter Aa5R_1923 PF00535 Glycosyl transferase family 2 Aa5R_1927 PF04138 GtrA-like protein Aa5R_1934 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase Aa5R_1935 PF04321 RmlD substrate binding domain Aa5R_1936 PF00483 Nucleotidyl transferase Aa5R_1938 PF13406 Transglycosylase SLT domain Aa5R_1940 PF00535 Glycosyl transferase family 2 Aa5R_1948 PF14743 DNA ligase OB-like domain Aa5R_1948 PF01068 ATP dependent DNA ligase domain Aa5R_1968 PF01300 Telomere recombination Aa5R_1968 PF00708 Acylphosphatase Aa5R_1968 PF17788 HypF Kae1-like domain Aa5R_1968 PF07503 HypF finger Aa5R_1974 PF00361 Proton-conducting membrane transporter Aa5R_1974 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Aa5R_2002 PF16193 AAA C-terminal domain Aa5R_2002 PF00004 ATPase family associated with various cellular activities (AAA) Aa5R_2002 PF12002 MgsA AAA+ ATPase C terminal Aa5R_201 PF06738 Putative threonine/serine exporter Aa5R_201 PF12821 Threonine/Serine exporter, ThrE Aa5R_2012 PF03550 Outer membrane lipoprotein LolB Aa5R_2013 PF08544 GHMP kinases C terminal Aa5R_2013 PF00288 GHMP kinases N terminal domain Aa5R_2014 PF14572 Phosphoribosyl synthetase-associated domain Aa5R_2014 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase Aa5R_2017 PF02652 L-lactate permease Aa5R_2021 PF00155 Aminotransferase class I and II Aa5R_2026 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Aa5R_2036 PF01702 Queuine tRNA-ribosyltransferase Aa5R_2039 PF02355 Protein export membrane protein Aa5R_2039 PF13721 SecD export protein N-terminal TM region Aa5R_2039 PF07549 SecD/SecF GG Motif Aa5R_2044 PF02653 Branched-chain amino acid transport system / permease component Aa5R_2046 PF13407 Periplasmic binding protein domain Aa5R_2047 PF13407 Periplasmic binding protein domain Aa5R_2057 PF01261 Xylose isomerase-like TIM barrel Aa5R_206 PF09115 DNA polymerase III, delta subunit, C terminal Aa5R_2065 PF02794 RTX toxin acyltransferase family Aa5R_2067 PF00464 Serine hydroxymethyltransferase Aa5R_2071 PF03603 DNA polymerase III psi subunit Aa5R_2072 PF00583 Acetyltransferase (GNAT) family Aa5R_2073 PF17946 RecC C-terminal domain Aa5R_2077 PF06519 TolA C-terminal Aa5R_2110 PF00829 Ribosomal prokaryotic L21 protein Aa5R_2114 PF01018 GTP1/OBG Aa5R_2114 PF01926 50S ribosome-binding GTPase Aa5R_2118 PF00528 Binding-protein-dependent transport system inner membrane component Aa5R_2125 PF03641 Possible lysine decarboxylase Aa5R_2127 PF07681 DoxX Aa5R_2128 PF12111 Polyribonucleotide phosphorylase C terminal Aa5R_2128 PF10150 Ribonuclease E/G family Aa5R_2128 PF00575 S1 RNA binding domain Aa5R_2134 PF01464 Transglycosylase SLT domain Aa5R_2146 PF01297 Zinc-uptake complex component A periplasmic Aa5R_2148 PF04461 Protein of unknown function (DUF520) Aa5R_215 PF02447 GntP family permease Aa5R_2161 PF03807 NADP oxidoreductase coenzyme F420-dependent Aa5R_2161 PF14748 Pyrroline-5-carboxylate reductase dimerisation Aa5R_2165 PF08525 Opacity-associated protein A N-terminal motif Aa5R_2165 PF04225 Opacity-associated protein A LysM-like domain Aa5R_2173 PF00149 Calcineurin-like phosphoesterase Aa5R_2188 PF03883 Peroxide stress protein YaaA Aa5R_223 PF01323 DSBA-like thioredoxin domain Aa5R_229 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Aa5R_243 PF05000 RNA polymerase Rpb1, domain 4 Aa5R_243 PF00623 RNA polymerase Rpb1, domain 2 Aa5R_243 PF04983 RNA polymerase Rpb1, domain 3 Aa5R_243 PF04997 RNA polymerase Rpb1, domain 1 Aa5R_243 PF04998 RNA polymerase Rpb1, domain 5 Aa5R_257 PF01144 Coenzyme A transferase Aa5R_266 PF00654 Voltage gated chloride channel Aa5R_267 PF01207 Dihydrouridine synthase (Dus) Aa5R_28 PF01578 Cytochrome C assembly protein Aa5R_302 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Aa5R_304 PF00333 Ribosomal protein S5, N-terminal domain Aa5R_304 PF03719 Ribosomal protein S5, C-terminal domain Aa5R_314 PF05525 Branched-chain amino acid transport protein Aa5R_320 PF01118 Semialdehyde dehydrogenase, NAD binding domain Aa5R_320 PF02774 Semialdehyde dehydrogenase, dimerisation domain Aa5R_323 PF16747 Surface-adhesin protein E Aa5R_349 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Aa5R_349 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain Aa5R_363 PF13419 Haloacid dehalogenase-like hydrolase Aa5R_365 PF01430 Hsp33 protein Aa5R_375 PF02091 Glycyl-tRNA synthetase alpha subunit Aa5R_378 PF04976 DMSO reductase anchor subunit (DmsC) Aa5R_379 PF13247 4Fe-4S dicluster domain Aa5R_379 PF12800 4Fe-4S binding domain Aa5R_394 PF01578 Cytochrome C assembly protein Aa5R_415 PF04390 Lipopolysaccharide-assembly Aa5R_419 PF07516 SecA Wing and Scaffold domain Aa5R_419 PF01043 SecA preprotein cross-linking domain Aa5R_419 PF07517 SecA DEAD-like domain Aa5R_419 PF02810 SEC-C motif Aa5R_427 PF00436 Single-strand binding protein family Aa5R_431 PF00263 Bacterial type II and III secretion system protein Aa5R_431 PF03958 Bacterial type II/III secretion system short domain Aa5R_438 PF07992 Pyridine nucleotide-disulphide oxidoreductase Aa5R_438 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Aa5R_439 PF13545 Crp-like helix-turn-helix domain Aa5R_439 PF00027 Cyclic nucleotide-binding domain Aa5R_455 PF00270 DEAD/DEAH box helicase Aa5R_455 PF00271 Helicase conserved C-terminal domain Aa5R_455 PF18074 Primosomal protein N C-terminal domain Aa5R_455 PF18319 PriA DNA helicase Cys-rich region (CRR) domain Aa5R_455 PF17764 3′ DNA-binding domain (3′BD) Aa5R_486 PF03009 Glycerophosphoryl diester phosphodiesterase family Aa5R_492 PF01726 LexA DNA binding domain Aa5R_492 PF00717 Peptidase S24-like Aa5R_493 PF01553 Acyltransferase Aa5R_494 PF00005 ABC transporter Aa5R_494 PF00664 ABC transporter transmembrane region Aa5R_521 PF01116 Fructose-bisphosphate aldolase class-II Aa5R_563 PF13932 GidA associated domain Aa5R_58 PF00312 Ribosomal protein S15 Aa5R_591 PF03702 Anhydro-N-acetylmuramic acid kinase Aa5R_592 PF00132 Bacterial transferase hexapeptide (six repeats) Aa5R_592 PF12804 MobA-like NTP transferase domain Aa5R_601 PF00154 recA bacterial DNA recombination protein Aa5R_610 PF03600 Citrate transporter Aa5R_610 PF02080 TrkA-C domain Aa5R_611 PF01351 Ribonuclease HII Aa5R_615 PF00132 Bacterial transferase hexapeptide (six repeats) Aa5R_615 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD Aa5R_639 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain Aa5R_639 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain Aa5R_652 PF00384 Molybdopterin oxidoreductase Aa5R_652 PF01568 Molydopterin dinucleotide binding domain Aa5R_652 PF10518 TAT (twin-arginine translocation) pathway signal sequence Aa5R_652 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Aa5R_656 PF03264 NapC/NirT cytochrome c family, N-terminal region Aa5R_673 PF09335 SNARE associated Golgi protein Aa5R_696 PF03830 PTS system sorbose subfamily IIB component Aa5R_696 PF03610 PTS system fructose IIA component Aa5R_706 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) Aa5R_713 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Aa5R_713 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Aa5R_713 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Aa5R_713 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Aa5R_739 PF04393 Protein of unknown function (DUF535) Aa5R_764 PF05958 tRNA (Uracil-5-)-methyltransferase Aa5R_764 PF01938 TRAM domain Aa5R_767 PF00318 Ribosomal protein S2 Aa5R_773 PF05099 Tellurite resistance protein TerB Aa5R_773 PF00226 DnaJ domain Aa5R_779 PF04320 Protein with unknown function (DUF469) Aa5R_784 PF03923 Uncharacterized lipoprotein Aa5R_795 PF02424 ApbE family Aa5R_796 PF04400 (Na+)-NQR maturation NqrM Aa5R_809 PF03819 MazG nucleotide pyrophosphohydrolase domain Aa5R_812 PF07208 Protein of unknown function (DUF1414) Aa5R_830 PF03743 Bacterial conjugation TrbI-like protein Aa5R_848 PF01208 Uroporphyrinogen decarboxylase (URO-D) Aa5R_85 PF09278 MerR, DNA binding Aa5R_85 PF00376 MerR family regulatory protein Aa5R_860 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase Aa5R_862 PF02592 Putative vitamin uptake transporter Aa5R_863 PF02592 Putative vitamin uptake transporter Aa5R_871 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Aa5R_871 PF03466 LysR substrate binding domain Aa5R_877 PF13407 Periplasmic binding protein domain Aa5R_879 PF00485 Phosphoribulokinase / Uridine kinase family Aa5R_918 PF13629 Pilus formation protein N terminal region Aa5R_918 PF04972 BON domain Aa5R_918 PF00263 Bacterial type II and III secretion system protein Aa5R_925 PF05127 Helicase Aa5R_925 PF17176 tRNA-binding domain Aa5R_925 PF13718 GNAT acetyltransferase 2 Aa5R_932 PF00528 Binding-protein-dependent transport system inner membrane component Aa5R_944 PF04101 Glycosyltransferase family 28 C-terminal domain Aa5R_944 PF03033 Glycosyltransferase family 28 N-terminal domain Aa5R_954 PF01546 Peptidase family M20/M25/M40 Aa5R_954 PF07687 Peptidase dimerisation domain Aa5R_957 PF00149 Calcineurin-like phosphoesterase Aa5R_973 PF01032 FecCD transport family Aa5R_976 PF00149 Calcineurin-like phosphoesterase Aa5R_995 PF07715 TonB-dependent Receptor Plug Domain Aa5R_995 PF00593 TonB dependent receptor Aa5R_995 PF04886 PT repeat Aa5S_1018 PF01176 Translation initiation factor 1A / IF-1 Aa5S_1021 PF00334 Nucleoside diphosphate kinase Aa5S_1028 PF07743 HSCB C-terminal oligomerisation domain Aa5S_1032 PF02082 Transcriptional regulator Aa5S_1051 PF13417 Glutathione S-transferase, N-terminal domain Aa5S_1051 PF04399 Glutaredoxin 2, C terminal domain Aa5S_110 PF01121 Dephospho-CoA kinase Aa5S_111 PF03884 DNA gyrase inhibitor YacG Aa5S_1129 PF13609 Gram-negative porin Aa5S_113 PF01235 Sodium:alanine symporter family Aa5S_1137 PF03462 PCRF domain Aa5S_1137 PF00472 RF-1 domain Aa5S_1150 PF00665 Integrase core domain Aa5S_1172 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE Aa5S_1185 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Aa5S_1215 PF00128 Alpha amylase, catalytic domain Aa5S_1220 PF02264 LamB porin Aa5S_1221 PF07148 Maltose operon periplasmic protein precursor (MalM) Aa5S_1223 PF00994 Probable molybdopterin binding domain Aa5S_1223 PF03453 MoeA N-terminal region (domain I and II) Aa5S_1223 PF03454 MoeA C-terminal region (domain IV) Aa5S_1241 PF00905 Penicillin binding protein transpeptidase domain Aa5S_1241 PF00912 Transglycosylase Aa5S_1241 PF06832 Penicillin-Binding Protein C-terminus Family Aa5S_128 PF00364 Biotin-requiring enzyme Aa5S_1283 PF10670 Domain of unknown function (DUF4198) Aa5S_129 PF01220 Dehydroquinase class II Aa5S_1297 PF03739 Lipopolysaccharide export system permease LptF/LptG Aa5S_1301 PF00528 Binding-protein-dependent transport system inner membrane component Aa5S_1303 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Aa5S_1303 PF03459 TOBE domain Aa5S_1318 PF13375 RnfC Barrel sandwich hybrid domain Aa5S_1318 PF10531 SLBB domain Aa5S_1318 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Aa5S_1318 PF12838 4Fe-4S dicluster domain Aa5S_1322 PF00730 HhH-GPD superfamily base excision DNA repair protein Aa5S_1322 PF00633 Helix-hairpin-helix motif Aa5S_1322 PF10576 Iron-sulfur binding domain of endonuclease III Aa5S_1330 PF01497 Periplasmic binding protein Aa5S_1331 PF02872 5'-nucleotidase, C-terminal domain Aa5S_1331 PF00149 Calcineurin-like phosphoesterase Aa5S_1342 PF00764 Arginosuccinate synthase Aa5S_1360 PF00528 Binding-protein-dependent transport system inner membrane component Aa5S_1363 PF00595 PDZ domain Aa5S_1390 PF01726 LexA DNA binding domain Aa5S_1390 PF00717 Peptidase S24-like Aa5S_1408 PF08364 Bacterial translation initiation factor IF-2 associated region Aa5S_1408 PF04760 Translation initiation factor IF-2, N-terminal region Aa5S_1408 PF11987 Translation-initiation factor 2 Aa5S_1408 PF00009 Elongation factor Tu GTP binding domain Aa5S_1409 PF18273 Type III R-M EcoP15I C-terminal domain Aa5S_1409 PF01555 DNA methylase Aa5S_1424 PF00528 Binding-protein-dependent transport system inner membrane component Aa5S_1439 PF00871 Acetokinase family Aa5S_1442 PF02446 4-alpha-glucanotransferase Aa5S_1461 PF00356 Bacterial regulatory proteins, lacI family Aa5S_1475 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Aa5S_1479 PF02525 Flavodoxin-like fold Aa5S_149 PF00313 'Cold-shock' DNA-binding domain Aa5S_1503 PF17848 Acetyl-coA carboxylase zinc finger domain Aa5S_1503 PF01039 Carboxyl transferase domain Aa5S_1507 PF03956 Lysine exporter LysO Aa5S_151 PF04488 Glycosyltransferase sugar-binding region containing DXD motif Aa5S_152 PF00206 Lyase Aa5S_152 PF14698 Argininosuccinate lyase C-terminal Aa5S_1520 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Aa5S_1526 PF00483 Nucleotidyl transferase Aa5S_1528 PF00343 Carbohydrate phosphorylase Aa5S_153 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Aa5S_153 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain Aa5S_1539 PF00929 Exonuclease Aa5S_1539 PF08411 Exonuclease C-terminal Aa5S_1541 PF00665 Integrase core domain Aa5S_1541 PF13276 HTH-like domain Aa5S_1545 PF00210 Ferritin-like domain Aa5S_1581 PF01380 SIS domain Aa5S_1581 PF00571 CBS domain Aa5S_1588 PF01381 Helix-turn-helix Aa5S_159 PF05662 Coiled stalk of trimeric autotransporter adhesin Aa5S_159 PF05658 Head domain of trimeric autotransporter adhesin Aa5S_159 PF03895 YadA-like membrane anchor domain Aa5S_159 PF13018 Extended Signal Peptide of Type V secretion system Aa5S_1593 PF04277 Oxaloacetate decarboxylase, gamma chain Aa5S_1594 PF00682 HMGL-like Aa5S_1594 PF02436 Conserved carboxylase domain Aa5S_1594 PF00364 Biotin-requiring enzyme Aa5S_1604 PF13693 Winged helix-turn-helix DNA-binding Aa5S_1611 PF00290 Tryptophan synthase alpha chain Aa5S_1619 PF02653 Branched-chain amino acid transport system / permease component Aa5S_1627 PF00480 ROK family Aa5S_1629 PF04386 Stringent starvation protein B Aa5S_1646 PF05016 ParE toxin of type II toxin-antitoxin system, parDE Aa5S_1665 PF00672 HAMP domain Aa5S_1665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Aa5S_1665 PF00512 His Kinase A (phospho-acceptor) domain Aa5S_1667 PF12857 TOBE-like domain Aa5S_1667 PF00005 ABC transporter Aa5S_1672 PF00816 H-NS histone family Aa5S_1679 PF01192 RNA polymerase Rpb6 Aa5S_1681 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Aa5S_1681 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Aa5S_1689 PF00005 ABC transporter Aa5S_1689 PF12399 Branched-chain amino acid ATP-binding cassette transporter Aa5S_1713 PF02395 Immunoglobulin A1 protease Aa5S_1713 PF03212 Pertactin Aa5S_1713 PF03797 Autotransporter beta-domain Aa5S_1720 PF01168 Alanine racemase, N-terminal domain Aa5S_1724 PF00288 GHMP kinases N terminal domain Aa5S_1724 PF08544 GHMP kinases C terminal Aa5S_1753 PF04542 Sigma-70 region 2 Aa5S_1753 PF04545 Sigma-70, region 4 Aa5S_1753 PF03979 Sigma-70 factor, region 1.1 Aa5S_1753 PF04539 Sigma-70 region 3 Aa5S_1753 PF00140 Sigma-70 factor, region 1.2 Aa5S_1753 PF04546 Sigma-70, non-essential region Aa5S_1768 PF13276 HTH-like domain Aa5S_1768 PF00665 Integrase core domain Aa5S_1771 PF01966 HD domain Aa5S_1771 PF08335 GlnD PII-uridylyltransferase Aa5S_178 PF00270 DEAD/DEAH box helicase Aa5S_178 PF00271 Helicase conserved C-terminal domain Aa5S_1787 PF01609 Transposase DDE domain Aa5S_1806 PF01344 Kelch motif Aa5S_1808 PF01389 OmpA-like transmembrane domain Aa5S_1808 PF00691 OmpA family Aa5S_181 PF07690 Major Facilitator Superfamily Aa5S_1810 PF03824 High-affinity nickel-transport protein Aa5S_1813 PF12848 ABC transporter Aa5S_1813 PF00005 ABC transporter Aa5S_1815 PF00986 DNA gyrase B subunit, carboxyl terminus Aa5S_1815 PF00204 DNA gyrase B Aa5S_1815 PF01751 Toprim domain Aa5S_1815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Aa5S_1825 PF03372 Endonuclease/Exonuclease/phosphatase family Aa5S_1834 PF03925 SeqA protein C-terminal domain Aa5S_1834 PF17206 SeqA protein N-terminal domain Aa5S_1840 PF01253 Translation initiation factor SUI1 Aa5S_1841 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family Aa5S_1847 PF04393 Protein of unknown function (DUF535) Aa5S_1848 PF07715 TonB-dependent Receptor Plug Domain Aa5S_1854 PF17761 DUF1016 N-terminal domain Aa5S_1854 PF06250 YhcG PDDEXK nuclease domain Aa5S_1861 PF00005 ABC transporter Aa5S_1864 PF00708 Acylphosphatase Aa5S_1868 PF12805 FUSC-like inner membrane protein yccS Aa5S_1869 PF01713 Smr domain Aa5S_1881 PF00565 Staphylococcal nuclease homologue Aa5S_1889 PF16200 C-terminal region of band_7 Aa5S_1889 PF01145 SPFH domain / Band 7 family Aa5S_1903 PF00005 ABC transporter Aa5S_1903 PF00664 ABC transporter transmembrane region Aa5S_1909 PF07273 Protein of unknown function (DUF1439) Aa5S_1910 PF00480 ROK family Aa5S_192 PF04301 Protein of unknown function (DUF452) Aa5S_1946 PF00580 UvrD/REP helicase N-terminal domain Aa5S_1946 PF13361 UvrD-like helicase C-terminal domain Aa5S_1948 PF01202 Shikimate kinase Aa5S_198 PF01472 PUA domain Aa5S_198 PF00696 Amino acid kinase family Aa5S_1993 PF00528 Binding-protein-dependent transport system inner membrane component Aa5S_1997 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Aa5S_1997 PF02403 Seryl-tRNA synthetase N-terminal domain Aa5S_1998 PF03605 Anaerobic c4-dicarboxylate membrane transporter Aa5S_202 PF00186 Dihydrofolate reductase Aa5S_204 PF07509 Protein of unknown function (DUF1523) Aa5S_2053 PF00205 Thiamine pyrophosphate enzyme, central domain Aa5S_2053 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Aa5S_2053 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Aa5S_2060 PF00664 ABC transporter transmembrane region Aa5S_2060 PF03412 Peptidase C39 family Aa5S_2060 PF00005 ABC transporter Aa5S_2072 PF00691 OmpA family Aa5S_2075 PF02472 Biopolymer transport protein ExbD/TolR Aa5S_2085 PF02075 Crossover junction endodeoxyribonuclease RuvC Aa5S_2087 PF01709 Transcriptional regulator Aa5S_2098 PF00929 Exonuclease Aa5S_2101 PF04055 Radical SAM superfamily Aa5S_2101 PF00919 Uncharacterized protein family UPF0004 Aa5S_2101 PF01938 TRAM domain Aa5S_2108 PF01016 Ribosomal L27 protein Aa5S_2109 PF00892 EamA-like transporter family Aa5S_2116 PF00528 Binding-protein-dependent transport system inner membrane component Aa5S_2136 PF03458 UPF0126 domain Aa5S_214 PF01261 Xylose isomerase-like TIM barrel Aa5S_2147 PF10144 Bacterial virulence factor haemolysin Aa5S_2152 PF06827 Zinc finger found in FPG and IleRS Aa5S_2152 PF08264 Anticodon-binding domain of tRNA Aa5S_2152 PF00133 tRNA synthetases class I (I, L, M and V) Aa5S_2163 PF04055 Radical SAM superfamily Aa5S_2169 PF10063 Uncharacterized integral membrane protein (DUF2301) Aa5S_2171 PF01553 Acyltransferase Aa5S_2173 PF00892 EamA-like transporter family Aa5S_2179 PF00933 Glycosyl hydrolase family 3 N terminal domain Aa5S_2193 PF02096 60Kd inner membrane protein Aa5S_2193 PF14849 YidC periplasmic domain Aa5S_228 PF00294 pfkB family carbohydrate kinase Aa5S_246 PF00831 Ribosomal L29 protein Aa5S_25 PF01578 Cytochrome C assembly protein Aa5S_25 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal Aa5S_254 PF00297 Ribosomal protein L3 Aa5S_263 PF03606 C4-dicarboxylate anaerobic carrier Aa5S_274 PF03889 Alternative ribosome-rescue factor A Aa5S_283 PF01189 16S rRNA methyltransferase RsmB/F Aa5S_283 PF01029 NusB family Aa5S_284 PF02911 Formyl transferase, C-terminal domain Aa5S_284 PF00551 Formyl transferase Aa5S_285 PF01327 Polypeptide deformylase Aa5S_286 PF12724 Flavodoxin domain Aa5S_289 PF01205 Uncharacterized protein family UPF0029 Aa5S_289 PF09186 Domain of unknown function (DUF1949) Aa5S_295 PF01196 Ribosomal protein L17 Aa5S_298 PF00411 Ribosomal protein S11 Aa5S_301 PF00344 SecY translocase Aa5S_313 PF00117 Glutamine amidotransferase class-I Aa5S_313 PF06418 CTP synthase N-terminus Aa5S_321 PF10531 SLBB domain Aa5S_353 PF01177 Asp/Glu/Hydantoin racemase Aa5S_361 PF12852 Cupin Aa5S_361 PF12833 Helix-turn-helix domain Aa5S_377 PF02613 Nitrate reductase delta subunit Aa5S_383 PF17841 BID domain of Bartonella effector protein (Bep) Aa5S_383 PF02661 Fic/DOC family Aa5S_390 PF03544 Gram-negative bacterial TonB protein C-terminal Aa5S_402 PF00206 Lyase Aa5S_402 PF08328 Adenylosuccinate lyase C-terminal Aa5S_423 PF13276 HTH-like domain Aa5S_423 PF00665 Integrase core domain Aa5S_461 PF01544 CorA-like Mg2+ transporter protein Aa5S_466 PF02578 Multi-copper polyphenol oxidoreductase laccase Aa5S_469 PF01812 5-formyltetrahydrofolate cyclo-ligase family Aa5S_476 PF01782 RimM N-terminal domain Aa5S_476 PF05239 PRC-barrel domain Aa5S_477 PF01746 tRNA (Guanine-1)-methyltransferase Aa5S_479 PF04093 rod shape-determining protein MreD Aa5S_487 PF17782 DprA winged helix domain Aa5S_487 PF02481 DNA recombination-mediator protein A Aa5S_489 PF01084 Ribosomal protein S18 Aa5S_500 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) Aa5S_500 PF00534 Glycosyl transferases group 1 Aa5S_505 PF09335 SNARE associated Golgi protein Aa5S_508 PF02542 YgbB family Aa5S_510 PF04977 Septum formation initiator Aa5S_52 PF06450 Bacterial Na+/H+ antiporter B (NhaB) Aa5S_535 PF02653 Branched-chain amino acid transport system / permease component Aa5S_541 PF03610 PTS system fructose IIA component Aa5S_541 PF03830 PTS system sorbose subfamily IIB component Aa5S_548 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) Aa5S_548 PF18766 SWI2/SNF2 ATPase Aa5S_548 PF12008 Type I restriction and modification enzyme - subunit R C terminal Aa5S_567 PF00132 Bacterial transferase hexapeptide (six repeats) Aa5S_567 PF06426 Serine acetyltransferase, N-terminal Aa5S_570 PF00581 Rhodanese-like domain Aa5S_577 PF04102 SlyX Aa5S_582 PF04077 DsrH like protein Aa5S_602 PF02631 RecX family Aa5S_612 PF02684 Lipid-A-disaccharide synthetase Aa5S_617 PF01103 Surface antigen Aa5S_617 PF07244 Surface antigen variable number repeat Aa5S_618 PF00595 PDZ domain Aa5S_618 PF02163 Peptidase family M50 Aa5S_621 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain Aa5S_621 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase Aa5S_621 PF13288 DXP reductoisomerase C-terminal domain Aa5S_63 PF00710 Asparaginase, N-terminal Aa5S_63 PF17763 Glutaminase/Asparaginase C-terminal domain Aa5S_631 PF00581 Rhodanese-like domain Aa5S_633 PF02646 RmuC family Aa5S_635 PF01300 Telomere recombination Aa5S_642 PF00009 Elongation factor Tu GTP binding domain Aa5S_642 PF00679 Elongation factor G C-terminus Aa5S_642 PF03764 Elongation factor G, domain IV Aa5S_642 PF14492 Elongation Factor G, domain II Aa5S_642 PF03144 Elongation factor Tu domain 2 Aa5S_651 PF03927 NapD protein Aa5S_658 PF01075 Glycosyltransferase family 9 (heptosyltransferase) Aa5S_660 PF01370 NAD dependent epimerase/dehydratase family Aa5S_678 PF00270 DEAD/DEAH box helicase Aa5S_678 PF00271 Helicase conserved C-terminal domain Aa5S_698 PF02881 SRP54-type protein, helical bundle domain Aa5S_698 PF00448 SRP54-type protein, GTPase domain Aa5S_709 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Aa5S_718 PF00665 Integrase core domain Aa5S_732 PF06508 Queuosine biosynthesis protein QueC Aa5S_736 PF13335 Magnesium chelatase, subunit ChlI C-terminal Aa5S_736 PF01078 Magnesium chelatase, subunit ChlI Aa5S_737 PF01926 50S ribosome-binding GTPase Aa5S_74 PF13145 PPIC-type PPIASE domain Aa5S_754 PF01075 Glycosyltransferase family 9 (heptosyltransferase) Aa5S_772 PF00156 Phosphoribosyl transferase domain Aa5S_775 PF01207 Dihydrouridine synthase (Dus) Aa5S_782 PF04362 Bacterial Fe(2+) trafficking Aa5S_785 PF01722 BolA-like protein Aa5S_802 PF04452 RNA methyltransferase Aa5S_805 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Aa5S_805 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Aa5S_805 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Aa5S_805 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Aa5S_814 PF04355 SmpA / OmlA family Aa5S_817 PF03616 Sodium/glutamate symporter Aa5S_825 PF03135 CagE, TrbE, VirB family, component of type IV transporter system Aa5S_83 PF00403 Heavy-metal-associated domain Aa5S_832 PF02534 Type IV secretory system Conjugative DNA transfer Aa5S_838 PF13614 AAA domain Aa5S_853 PF02541 Ppx/GppA phosphatase family Aa5S_859 PF02602 Uroporphyrinogen-III synthase HemD Aa5S_870 PF00939 Sodium:sulfate symporter transmembrane region Aa5S_873 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Aa5S_873 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Aa5S_889 PF07687 Peptidase dimerisation domain Aa5S_889 PF01546 Peptidase family M20/M25/M40 Aa5S_897 PF00893 Small Multidrug Resistance protein Aa5S_904 PF00849 RNA pseudouridylate synthase Aa5S_915 PF00437 Type II/IV secretion system protein Aa5S_928 PF13580 SIS domain Aa5S_951 PF01817 Chorismate mutase type II Aa5S_951 PF00800 Prephenate dehydratase Aa5S_974 PF01032 FecCD transport family Aa5S_996 PF01266 FAD dependent oxidoreductase Aa5S_996 PF05430 S-adenosyl-L-methionine-dependent methyltransferase Aggac_10 PF01131 DNA topoisomerase Aggac_10 PF01751 Toprim domain Aggac_1015 PF02219 Methylenetetrahydrofolate reductase Aggac_1022 PF01924 Hydrogenase formation hypA family Aggac_1026 PF01891 Cobalt uptake substrate-specific transmembrane region Aggac_1029 PF01048 Phosphorylase superfamily Aggac_1032 PF10411 Disulfide bond isomerase protein N-terminus Aggac_1032 PF13098 Thioredoxin-like domain Aggac_1036 PF01242 6-pyruvoyl tetrahydropterin synthase Aggac_1037 PF04055 Radical SAM superfamily Aggac_1042 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Aggac_1042 PF00529 HlyD membrane-fusion protein of T1SS Aggac_1043 PF07690 Major Facilitator Superfamily Aggac_1053 PF04364 DNA polymerase III chi subunit, HolC Aggac_1058 PF00881 Nitroreductase family Aggac_1064 PF01261 Xylose isomerase-like TIM barrel Aggac_107 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase Aggac_107 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase Aggac_1073 PF01523 Putative modulator of DNA gyrase Aggac_1074 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain Aggac_1074 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain Aggac_1092 PF02264 LamB porin Aggac_1094 PF13416 Bacterial extracellular solute-binding protein Aggac_1102 PF12008 Type I restriction and modification enzyme - subunit R C terminal Aggac_1102 PF18766 SWI2/SNF2 ATPase Aggac_1102 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) Aggac_1103 PF03477 ATP cone domain Aggac_1103 PF02867 Ribonucleotide reductase, barrel domain Aggac_1103 PF00317 Ribonucleotide reductase, all-alpha domain Aggac_1108 PF05173 Dihydrodipicolinate reductase, C-terminus Aggac_1108 PF01113 Dihydrodipicolinate reductase, N-terminus Aggac_1123 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Aggac_1123 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Aggac_113 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain Aggac_113 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain Aggac_1142 PF08676 MutL C terminal dimerisation domain Aggac_1142 PF01119 DNA mismatch repair protein, C-terminal domain Aggac_1149 PF04317 YcjX-like family, DUF463 Aggac_1158 PF00199 Catalase Aggac_1158 PF06628 Catalase-related immune-responsive Aggac_1163 PF05662 Coiled stalk of trimeric autotransporter adhesin Aggac_1163 PF13018 Extended Signal Peptide of Type V secretion system Aggac_1163 PF05658 Head domain of trimeric autotransporter adhesin Aggac_1163 PF03895 YadA-like membrane anchor domain Aggac_1172 PF01406 tRNA synthetases class I (C) catalytic domain Aggac_1172 PF09190 DALR domain Aggac_1178 PF01098 Cell cycle protein Aggac_1179 PF03717 Penicillin-binding Protein dimerisation domain Aggac_1179 PF00905 Penicillin binding protein transpeptidase domain Aggac_119 PF18415 Histidine kinase receptor ArcB trans-membrane domain Aggac_119 PF00512 His Kinase A (phospho-acceptor) domain Aggac_119 PF01627 Hpt domain Aggac_119 PF00072 Response regulator receiver domain Aggac_119 PF00989 PAS fold Aggac_119 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Aggac_1196 PF00155 Aminotransferase class I and II Aggac_1203 PF06738 Putative threonine/serine exporter Aggac_1208 PF01026 TatD related DNase Aggac_121 PF05430 S-adenosyl-L-methionine-dependent methyltransferase Aggac_121 PF01266 FAD dependent oxidoreductase Aggac_1212 PF00543 Nitrogen regulatory protein P-II Aggac_1213 PF00455 DeoR C terminal sensor domain Aggac_1213 PF08220 DeoR-like helix-turn-helix domain Aggac_1215 PF17042 Nucleotide-binding C-terminal domain Aggac_1215 PF07005 Sugar-binding N-terminal domain Aggac_1218 PF02447 GntP family permease Aggac_1221 PF01624 MutS domain I Aggac_1221 PF05188 MutS domain II Aggac_1221 PF05192 MutS domain III Aggac_1221 PF05190 MutS family domain IV Aggac_1221 PF00488 MutS domain V Aggac_124 PF01513 ATP-NAD kinase Aggac_1244 PF04560 RNA polymerase Rpb2, domain 7 Aggac_1244 PF04565 RNA polymerase Rpb2, domain 3 Aggac_1244 PF10385 RNA polymerase beta subunit external 1 domain Aggac_1244 PF04561 RNA polymerase Rpb2, domain 2 Aggac_1244 PF04563 RNA polymerase beta subunit Aggac_1244 PF00562 RNA polymerase Rpb2, domain 6 Aggac_126 PF03922 OmpW family Aggac_1260 PF10410 DnaB-helicase binding domain of primase Aggac_1260 PF01807 CHC2 zinc finger Aggac_1260 PF08275 DNA primase catalytic core, N-terminal domain Aggac_1260 PF08278 DNA primase DnaG DnaB-binding Aggac_1282 PF01725 Ham1 family Aggac_1296 PF00528 Binding-protein-dependent transport system inner membrane component Aggac_1298 PF06804 NlpB/DapX lipoprotein Aggac_1299 PF00701 Dihydrodipicolinate synthetase family Aggac_130 PF03061 Thioesterase superfamily Aggac_1301 PF03212 Pertactin Aggac_1301 PF02395 Immunoglobulin A1 protease Aggac_1301 PF03797 Autotransporter beta-domain Aggac_1319 PF13609 Gram-negative porin Aggac_1321 PF00226 DnaJ domain Aggac_1321 PF00684 DnaJ central domain Aggac_1321 PF01556 DnaJ C terminal domain Aggac_1323 PF06097 Bacterial protein of unknown function (DUF945) Aggac_1331 PF05166 YcgL domain Aggac_1345 PF00571 CBS domain Aggac_1345 PF00478 IMP dehydrogenase / GMP reductase domain Aggac_1348 PF00238 Ribosomal protein L14p/L23e Aggac_1353 PF00347 Ribosomal protein L6 Aggac_1354 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Aggac_1358 PF00344 SecY translocase Aggac_1359 PF00444 Ribosomal protein L36 Aggac_1366 PF04345 Chorismate lyase Aggac_1367 PF00270 DEAD/DEAH box helicase Aggac_1367 PF17191 RecG wedge domain Aggac_1367 PF00271 Helicase conserved C-terminal domain Aggac_137 PF03840 Preprotein translocase SecG subunit Aggac_1372 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Aggac_1372 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Aggac_1374 PF03364 Polyketide cyclase / dehydrase and lipid transport Aggac_1377 PF13742 OB-fold nucleic acid binding domain Aggac_1377 PF02601 Exonuclease VII, large subunit Aggac_1390 PF00005 ABC transporter Aggac_1390 PF03412 Peptidase C39 family Aggac_1390 PF00664 ABC transporter transmembrane region Aggac_1397 PF02976 DNA mismatch repair enzyme MutH Aggac_1398 PF03741 Integral membrane protein TerC family Aggac_140 PF02132 RecR protein Aggac_140 PF13662 Toprim domain Aggac_1405 PF00665 Integrase core domain Aggac_1408 PF00149 Calcineurin-like phosphoesterase Aggac_1418 PF03918 Cytochrome C biogenesis protein Aggac_1420 PF01578 Cytochrome C assembly protein Aggac_1420 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal Aggac_1425 PF02335 Cytochrome c552 Aggac_1429 PF03918 Cytochrome C biogenesis protein Aggac_1430 PF08534 Redoxin Aggac_1437 PF07690 Major Facilitator Superfamily Aggac_1470 PF04055 Radical SAM superfamily Aggac_1472 PF13464 Domain of unknown function (DUF4115) Aggac_1483 PF00884 Sulfatase Aggac_1492 PF02384 N-6 DNA Methylase Aggac_1493 PF18766 SWI2/SNF2 ATPase Aggac_1493 PF11867 Domain of unknown function (DUF3387) Aggac_1493 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) Aggac_1499 PF04751 Protein of unknown function (DUF615) Aggac_1502 PF02595 Glycerate kinase family Aggac_1503 PF02447 GntP family permease Aggac_1506 PF03880 DbpA RNA binding domain Aggac_1506 PF00271 Helicase conserved C-terminal domain Aggac_1506 PF00270 DEAD/DEAH box helicase Aggac_151 PF02300 Fumarate reductase subunit C Aggac_1519 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein Aggac_1521 PF02954 Bacterial regulatory protein, Fis family Aggac_1527 PF06196 Protein of unknown function (DUF997) Aggac_1528 PF04575 Protein of unknown function (DUF560) Aggac_153 PF01170 Putative RNA methylase family UPF0020 Aggac_153 PF10672 S-adenosylmethionine-dependent methyltransferase Aggac_153 PF02926 THUMP domain Aggac_1542 PF10675 Protein of unknown function (DUF2489) Aggac_1549 PF05025 RbsD / FucU transport protein family Aggac_1550 PF00005 ABC transporter Aggac_1568 PF01207 Dihydrouridine synthase (Dus) Aggac_1569 PF01207 Dihydrouridine synthase (Dus) Aggac_1574 PF02390 Putative methyltransferase Aggac_1575 PF00730 HhH-GPD superfamily base excision DNA repair protein Aggac_1575 PF14815 NUDIX domain Aggac_1583 PF03116 NQR2, RnfD, RnfE family Aggac_1585 PF02508 Rnf-Nqr subunit, membrane protein Aggac_1593 PF00113 Enolase, C-terminal TIM barrel domain Aggac_1593 PF03952 Enolase, N-terminal domain Aggac_1597 PF01340 Met Apo-repressor, MetJ Aggac_16 PF04002 RadC-like JAB domain Aggac_1609 PF00486 Transcriptional regulatory protein, C terminal Aggac_1609 PF00072 Response regulator receiver domain Aggac_1613 PF03631 Virulence factor BrkB Aggac_1615 PF03473 MOSC domain Aggac_1618 PF03466 LysR substrate binding domain Aggac_1618 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Aggac_1625 PF00437 Type II/IV secretion system protein Aggac_1626 PF02534 Type IV secretory system Conjugative DNA transfer Aggac_1637 PF00561 alpha/beta hydrolase fold Aggac_1639 PF08220 DeoR-like helix-turn-helix domain Aggac_1639 PF00455 DeoR C terminal sensor domain Aggac_1648 PF04357 TamB, inner membrane protein subunit of TAM complex Aggac_1650 PF00072 Response regulator receiver domain Aggac_1650 PF00196 Bacterial regulatory proteins, luxR family Aggac_1654 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase Aggac_1665 PF09371 Tex-like protein N-terminal domain Aggac_1665 PF16921 Tex protein YqgF-like domain Aggac_1665 PF17674 HHH domain Aggac_1665 PF00575 S1 RNA binding domain Aggac_1669 PF00005 ABC transporter Aggac_167 PF01817 Chorismate mutase type II Aggac_167 PF00800 Prephenate dehydratase Aggac_1672 PF04994 TfoX C-terminal domain Aggac_1672 PF04993 TfoX N-terminal domain Aggac_1676 PF07730 Histidine kinase Aggac_1676 PF00672 HAMP domain Aggac_1676 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Aggac_1676 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term Aggac_1681 PF12837 4Fe-4S binding domain Aggac_1681 PF12801 4Fe-4S binding domain Aggac_1684 PF05257 CHAP domain Aggac_1684 PF03738 Glutathionylspermidine synthase preATP-grasp Aggac_1685 PF01075 Glycosyltransferase family 9 (heptosyltransferase) Aggac_1690 PF00149 Calcineurin-like phosphoesterase Aggac_1690 PF02872 5'-nucleotidase, C-terminal domain Aggac_1694 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain Aggac_1694 PF01612 3'-5' exonuclease Aggac_1694 PF00476 DNA polymerase family A Aggac_1694 PF01367 5'-3' exonuclease, C-terminal SAM fold Aggac_1699 PF13419 Haloacid dehalogenase-like hydrolase Aggac_170 PF02491 SHS2 domain inserted in FTSA Aggac_1700 PF00132 Bacterial transferase hexapeptide (six repeats) Aggac_1700 PF14602 Hexapeptide repeat of succinyl-transferase Aggac_1700 PF12464 Maltose acetyltransferase Aggac_1718 PF01048 Phosphorylase superfamily Aggac_1719 PF07670 Nucleoside recognition Aggac_1719 PF01773 Na+ dependent nucleoside transporter N-terminus Aggac_1719 PF07662 Na+ dependent nucleoside transporter C-terminus Aggac_172 PF01820 D-ala D-ala ligase N-terminus Aggac_172 PF07478 D-ala D-ala ligase C-terminus Aggac_1727 PF00579 tRNA synthetases class I (W and Y) Aggac_173 PF08245 Mur ligase middle domain Aggac_173 PF02875 Mur ligase family, glutamate ligase domain Aggac_173 PF01225 Mur ligase family, catalytic domain Aggac_1746 PF00665 Integrase core domain Aggac_175 PF01098 Cell cycle protein Aggac_176 PF08245 Mur ligase middle domain Aggac_176 PF02875 Mur ligase family, glutamate ligase domain Aggac_178 PF01225 Mur ligase family, catalytic domain Aggac_178 PF02875 Mur ligase family, glutamate ligase domain Aggac_178 PF08245 Mur ligase middle domain Aggac_1780 PF00132 Bacterial transferase hexapeptide (six repeats) Aggac_1780 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 Aggac_1792 PF06826 Predicted Permease Membrane Region Aggac_1792 PF02080 TrkA-C domain Aggac_1794 PF00593 TonB dependent receptor Aggac_1794 PF07715 TonB-dependent Receptor Plug Domain Aggac_1822 PF17347 Family of unknown function (DUF5377) Aggac_1833 PF01037 Lrp/AsnC ligand binding domain Aggac_1833 PF13404 AsnC-type helix-turn-helix domain Aggac_1848 PF00252 Ribosomal protein L16p/L10e Aggac_1857 PF00912 Transglycosylase Aggac_1857 PF00905 Penicillin binding protein transpeptidase domain Aggac_1857 PF14814 Bifunctional transglycosylase second domain Aggac_1858 PF03239 Iron permease FTR1 family Aggac_1871 PF00271 Helicase conserved C-terminal domain Aggac_1871 PF04408 Helicase associated domain (HA2) Aggac_1871 PF11898 Domain of unknown function (DUF3418) Aggac_1871 PF00270 DEAD/DEAH box helicase Aggac_1871 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold Aggac_1882 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase Aggac_1887 PF03480 Bacterial extracellular solute-binding protein, family 7 Aggac_1893 PF03824 High-affinity nickel-transport protein Aggac_1907 PF00080 Copper/zinc superoxide dismutase (SODC) Aggac_191 PF17757 UvrB interaction domain Aggac_191 PF00271 Helicase conserved C-terminal domain Aggac_191 PF03461 TRCF domain Aggac_191 PF00270 DEAD/DEAH box helicase Aggac_191 PF02559 CarD-like/TRCF domain Aggac_1911 PF00308 Bacterial dnaA protein Aggac_1911 PF08299 Bacterial dnaA protein helix-turn-helix Aggac_1911 PF11638 DnaA N-terminal domain Aggac_1920 PF00717 Peptidase S24-like Aggac_1920 PF10502 Signal peptidase, peptidase S26 Aggac_1923 PF03167 Uracil DNA glycosylase superfamily Aggac_1927 PF16916 Dimerisation domain of Zinc Transporter Aggac_1927 PF01545 Cation efflux family Aggac_193 PF17176 tRNA-binding domain Aggac_193 PF13718 GNAT acetyltransferase 2 Aggac_193 PF05127 Helicase Aggac_1930 PF00933 Glycosyl hydrolase family 3 N terminal domain Aggac_1937 PF07732 Multicopper oxidase Aggac_1942 PF03222 Tryptophan/tyrosine permease family Aggac_1946 PF04055 Radical SAM superfamily Aggac_195 PF02130 Uncharacterized protein family UPF0054 Aggac_1950 PF14748 Pyrroline-5-carboxylate reductase dimerisation Aggac_1950 PF03807 NADP oxidoreductase coenzyme F420-dependent Aggac_1952 PF12832 MFS_1 like family Aggac_1954 PF05698 Bacterial trigger factor protein (TF) C-terminus Aggac_1954 PF05697 Bacterial trigger factor protein (TF) Aggac_1954 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Aggac_1956 PF01252 Signal peptidase (SPase) II Aggac_1969 PF01225 Mur ligase family, catalytic domain Aggac_1969 PF02875 Mur ligase family, glutamate ligase domain Aggac_1969 PF08245 Mur ligase middle domain Aggac_1980 PF01053 Cys/Met metabolism PLP-dependent enzyme Aggac_1987 PF11412 Disulphide bond corrector protein DsbC Aggac_1987 PF02683 Cytochrome C biogenesis protein transmembrane region Aggac_1987 PF00085 Thioredoxin Aggac_1992 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Aggac_1992 PF00005 ABC transporter Aggac_1994 PF00528 Binding-protein-dependent transport system inner membrane component Aggac_1995 PF00528 Binding-protein-dependent transport system inner membrane component Aggac_1999 PF01668 SmpB protein Aggac_2005 PF00348 Polyprenyl synthetase Aggac_2014 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Aggac_2016 PF07690 Major Facilitator Superfamily Aggac_2040 PF07963 Prokaryotic N-terminal methylation motif Aggac_2053 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Aggac_2053 PF02378 Phosphotransferase system, EIIC Aggac_2053 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Aggac_2060 PF00294 pfkB family carbohydrate kinase Aggac_2066 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Aggac_2066 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Aggac_2071 PF00465 Iron-containing alcohol dehydrogenase Aggac_2071 PF00171 Aldehyde dehydrogenase family Aggac_2075 PF02355 Protein export membrane protein Aggac_2075 PF13721 SecD export protein N-terminal TM region Aggac_2075 PF07549 SecD/SecF GG Motif Aggac_2094 PF00155 Aminotransferase class I and II Aggac_2095 PF00266 Aminotransferase class-V Aggac_2099 PF01070 FMN-dependent dehydrogenase Aggac_2104 PF01966 HD domain Aggac_2104 PF01743 Poly A polymerase head domain Aggac_2104 PF12627 Probable RNA and SrmB- binding site of polymerase A Aggac_2109 PF18073 Rubredoxin metal binding domain Aggac_2110 PF01037 Lrp/AsnC ligand binding domain Aggac_2112 PF03548 Outer membrane lipoprotein carrier protein LolA Aggac_2114 PF03605 Anaerobic c4-dicarboxylate membrane transporter Aggac_213 PF00209 Sodium:neurotransmitter symporter family Aggac_2142 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Aggac_2163 PF01202 Shikimate kinase Aggac_2164 PF02447 GntP family permease Aggac_2165 PF00580 UvrD/REP helicase N-terminal domain Aggac_2165 PF13361 UvrD-like helicase C-terminal domain Aggac_226 PF03205 Molybdopterin guanine dinucleotide synthesis protein B Aggac_227 PF00106 short chain dehydrogenase Aggac_230 PF04453 LPS transport system D Aggac_230 PF03968 OstA-like protein Aggac_236 PF16124 RecQ zinc-binding Aggac_236 PF00270 DEAD/DEAH box helicase Aggac_236 PF09382 RQC domain Aggac_236 PF00271 Helicase conserved C-terminal domain Aggac_236 PF00570 HRDC domain Aggac_246 PF02687 FtsX-like permease family Aggac_246 PF00005 ABC transporter Aggac_246 PF12704 MacB-like periplasmic core domain Aggac_252 PF00128 Alpha amylase, catalytic domain Aggac_252 PF18390 Glycogen debranching enzyme C-terminal domain Aggac_252 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Aggac_255 PF00343 Carbohydrate phosphorylase Aggac_259 PF00768 D-alanyl-D-alanine carboxypeptidase Aggac_262 PF01553 Acyltransferase Aggac_262 PF13193 AMP-binding enzyme C-terminal domain Aggac_262 PF00501 AMP-binding enzyme Aggac_274 PF01370 NAD dependent epimerase/dehydratase family Aggac_279 PF08335 GlnD PII-uridylyltransferase Aggac_279 PF03710 Glutamate-ammonia ligase adenylyltransferase Aggac_282 PF09704 CRISPR-associated protein (Cas_Cas5) Aggac_286 PF02463 RecF/RecN/SMC N terminal domain Aggac_289 PF08543 Phosphomethylpyrimidine kinase Aggac_291 PF00528 Binding-protein-dependent transport system inner membrane component Aggac_295 PF06295 Protein of unknown function (DUF1043) Aggac_310 PF01171 PP-loop family Aggac_310 PF11734 TilS substrate C-terminal domain Aggac_310 PF09179 TilS substrate binding domain Aggac_311 PF08543 Phosphomethylpyrimidine kinase Aggac_332 PF02540 NAD synthase Aggac_332 PF00958 GMP synthase C terminal domain Aggac_332 PF00117 Glutamine amidotransferase class-I Aggac_337 PF02576 RimP N-terminal domain Aggac_337 PF17384 RimP C-terminal SH3 domain Aggac_341 PF00271 Helicase conserved C-terminal domain Aggac_341 PF00176 SNF2 family N-terminal domain Aggac_359 PF02151 UvrB/uvrC motif Aggac_359 PF01541 GIY-YIG catalytic domain Aggac_359 PF08459 UvrC Helix-hairpin-helix N-terminal Aggac_364 PF13567 Domain of unknown function (DUF4131) Aggac_364 PF03772 Competence protein Aggac_364 PF00753 Metallo-beta-lactamase superfamily Aggac_385 PF02153 Prephenate dehydrogenase Aggac_385 PF01817 Chorismate mutase type II Aggac_406 PF00300 Histidine phosphatase superfamily (branch 1) Aggac_414 PF03611 PTS system sugar-specific permease component Aggac_426 PF18273 Type III R-M EcoP15I C-terminal domain Aggac_426 PF01555 DNA methylase Aggac_432 PF02525 Flavodoxin-like fold Aggac_433 PF07992 Pyridine nucleotide-disulphide oxidoreductase Aggac_434 PF16901 C-terminal domain of alpha-glycerophosphate oxidase Aggac_434 PF01266 FAD dependent oxidoreductase Aggac_449 PF00166 Chaperonin 10 Kd subunit Aggac_457 PF00005 ABC transporter Aggac_457 PF12848 ABC transporter Aggac_458 PF00005 ABC transporter Aggac_458 PF12848 ABC transporter Aggac_465 PF00132 Bacterial transferase hexapeptide (six repeats) Aggac_465 PF12804 MobA-like NTP transferase domain Aggac_467 PF01380 SIS domain Aggac_469 PF13274 Protein of unknown function (DUF4065) Aggac_473 PF00528 Binding-protein-dependent transport system inner membrane component Aggac_483 PF00440 Bacterial regulatory proteins, tetR family Aggac_507 PF13416 Bacterial extracellular solute-binding protein Aggac_514 PF03613 PTS system mannose/fructose/sorbose family IID component Aggac_529 PF13411 MerR HTH family regulatory protein Aggac_535 PF14840 Processivity clamp loader gamma complex DNA pol III C-term Aggac_535 PF06144 DNA polymerase III, delta subunit Aggac_538 PF10786 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) Aggac_551 PF00107 Zinc-binding dehydrogenase Aggac_551 PF08240 Alcohol dehydrogenase GroES-like domain Aggac_583 PF02416 mttA/Hcf106 family Aggac_593 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain Aggac_593 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain Aggac_61 PF03372 Endonuclease/Exonuclease/phosphatase family Aggac_623 PF01678 Diaminopimelate epimerase Aggac_627 PF10431 C-terminal, D2-small domain, of ClpB protein Aggac_627 PF02861 Clp amino terminal domain, pathogenicity island component Aggac_627 PF17871 AAA lid domain Aggac_627 PF07724 AAA domain (Cdc48 subfamily) Aggac_627 PF00004 ATPase family associated with various cellular activities (AAA) Aggac_633 PF01502 Phosphoribosyl-AMP cyclohydrolase Aggac_633 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase Aggac_636 PF13091 PLD-like domain Aggac_637 PF00588 SpoU rRNA Methylase family Aggac_637 PF08032 RNA 2'-O ribose methyltransferase substrate binding Aggac_639 PF00445 Ribonuclease T2 family Aggac_645 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Aggac_645 PF00205 Thiamine pyrophosphate enzyme, central domain Aggac_647 PF00291 Pyridoxal-phosphate dependent enzyme Aggac_647 PF00585 C-terminal regulatory domain of Threonine dehydratase Aggac_649 PF00005 ABC transporter Aggac_65 PF02146 Sir2 family Aggac_656 PF01975 Survival protein SurE Aggac_66 PF04399 Glutaredoxin 2, C terminal domain Aggac_66 PF13417 Glutathione S-transferase, N-terminal domain Aggac_672 PF00436 Single-strand binding protein family Aggac_680 PF00773 RNB domain Aggac_680 PF08206 Ribonuclease B OB domain Aggac_680 PF17876 Cold shock domain Aggac_680 PF00575 S1 RNA binding domain Aggac_680 PF08461 Ribonuclease R winged-helix domain Aggac_694 PF02578 Multi-copper polyphenol oxidoreductase laccase Aggac_695 PF00884 Sulfatase Aggac_705 PF00271 Helicase conserved C-terminal domain Aggac_705 PF18074 Primosomal protein N C-terminal domain Aggac_705 PF00270 DEAD/DEAH box helicase Aggac_705 PF17764 3′ DNA-binding domain (3′BD) Aggac_705 PF18319 PriA DNA helicase Cys-rich region (CRR) domain Aggac_708 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) Aggac_713 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain Aggac_713 PF06827 Zinc finger found in FPG and IleRS Aggac_713 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain Aggac_715 PF00830 Ribosomal L28 family Aggac_734 PF17760 UvrA interaction domain Aggac_734 PF17755 UvrA DNA-binding domain Aggac_736 PF00535 Glycosyl transferase family 2 Aggac_753 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family Aggac_760 PF07715 TonB-dependent Receptor Plug Domain Aggac_761 PF07715 TonB-dependent Receptor Plug Domain Aggac_767 PF17761 DUF1016 N-terminal domain Aggac_767 PF06250 YhcG PDDEXK nuclease domain Aggac_771 PF01027 Inhibitor of apoptosis-promoting Bax1 Aggac_784 PF02779 Transketolase, pyrimidine binding domain Aggac_784 PF02780 Transketolase, C-terminal domain Aggac_785 PF00456 Transketolase, thiamine diphosphate binding domain Aggac_792 PF04172 LrgB-like family Aggac_795 PF00266 Aminotransferase class-V Aggac_800 PF02525 Flavodoxin-like fold Aggac_810 PF03843 Outer membrane lipoprotein Slp family Aggac_828 PF16363 GDP-mannose 4,6 dehydratase Aggac_84 PF00588 SpoU rRNA Methylase family Aggac_848 PF10670 Domain of unknown function (DUF4198) Aggac_850 PF02811 PHP domain Aggac_852 PF11940 Domain of unknown function (DUF3458) Ig-like fold Aggac_852 PF17432 Domain of unknown function (DUF3458_C) ARM repeats Aggac_852 PF01433 Peptidase family M1 domain Aggac_859 PF01032 FecCD transport family Aggac_876 PF03483 B3/4 domain Aggac_876 PF03147 Ferredoxin-fold anticodon binding domain Aggac_876 PF01588 Putative tRNA binding domain Aggac_876 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain Aggac_876 PF03484 tRNA synthetase B5 domain Aggac_883 PF00117 Glutamine amidotransferase class-I Aggac_893 PF00682 HMGL-like Aggac_893 PF00364 Biotin-requiring enzyme Aggac_893 PF02436 Conserved carboxylase domain Aggac_896 PF07715 TonB-dependent Receptor Plug Domain Aggac_896 PF00593 TonB dependent receptor Aggac_9 PF01131 DNA topoisomerase Aggac_9 PF01751 Toprim domain Aggac_904 PF00717 Peptidase S24-like Aggac_904 PF01381 Helix-turn-helix Aggac_906 PF07715 TonB-dependent Receptor Plug Domain Aggac_906 PF00593 TonB dependent receptor Aggac_909 PF00291 Pyridoxal-phosphate dependent enzyme Aggac_920 PF02653 Branched-chain amino acid transport system / permease component Aggac_922 PF00005 ABC transporter Aggac_926 PF00480 ROK family Aggac_927 PF00152 tRNA synthetases class II (D, K and N) Aggac_927 PF01336 OB-fold nucleic acid binding domain Aggac_928 PF04386 Stringent starvation protein B Aggac_933 PF04055 Radical SAM superfamily Aggac_933 PF06463 Molybdenum Cofactor Synthesis C Aggac_937 PF03575 Peptidase family S51 Aggac_939 PF03264 NapC/NirT cytochrome c family, N-terminal region Aggac_940 PF01568 Molydopterin dinucleotide binding domain Aggac_940 PF18364 Molybdopterin oxidoreductase N-terminal domain Aggac_940 PF00384 Molybdopterin oxidoreductase Aggac_951 PF00580 UvrD/REP helicase N-terminal domain Aggac_951 PF13361 UvrD-like helicase C-terminal domain Aggac_951 PF12705 PD-(D/E)XK nuclease superfamily Aggac_964 PF00672 HAMP domain Aggac_964 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Aggac_964 PF00512 His Kinase A (phospho-acceptor) domain Aggac_97 PF12404 Peptidase Aggac_97 PF00883 Cytosol aminopeptidase family, catalytic domain Aggac_973 PF01797 Transposase IS200 like Aggac_986 PF00005 ABC transporter Aggac_987 PF00950 ABC 3 transport family Aggac_997 PF02863 Arginine repressor, C-terminal domain Aggac_997 PF01316 Arginine repressor, DNA binding domain