#=GENOME_DIFF	1.0
#=CREATED	12:17:49 20 Jan 2022
#=PROGRAM	breseq 0.35.4 
#=COMMAND	breseq -j 6 -r /data/p127804/PROJECTS/JanMaarten/Yanyan_202201_SNP/genomes/Aa23S.gbk /data/p127804/PROJECTS/JanMaarten/Yanyan_202201_SNP/fastq/AA-23R-unknown_S9_L001_R1_001.fastq.gz -o /data/p127804/PROJECTS/JanMaarten/Yanyan_202201_SNP/breseq_results/fq23R_vs_gbk23S
#=REFSEQ	/data/p127804/PROJECTS/JanMaarten/Yanyan_202201_SNP/genomes/Aa23S.gbk
#=READSEQ	/data/p127804/PROJECTS/JanMaarten/Yanyan_202201_SNP/fastq/AA-23R-unknown_S9_L001_R1_001.fastq.gz
#=CONVERTED-BASES	190148809
#=CONVERTED-READS	833017
#=INPUT-BASES	190161409
#=INPUT-READS	833377
#=MAPPED-BASES	187247949
#=MAPPED-READS	821430
SNP	1	97	1	863092	A
RA	2	.	1	48453	0	G	C	bias_e_value=0.000369928	bias_p_value=1.70223e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=209.9	fisher_strand_p_value=6.35594e-12	frequency=2.254e-01	ks_quality_p_value=1	major_base=G	major_cov=50/5	major_frequency=7.746e-01	minor_base=C	minor_cov=0/16	new_cov=0/16	polymorphism_frequency=2.254e-01	polymorphism_score=10.8	prediction=polymorphism	ref_cov=50/5	total_cov=50/21
RA	3	.	1	58579	0	C	A	bias_e_value=2.74207	bias_p_value=1.26177e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=254.0	fisher_strand_p_value=7.23412e-08	frequency=2.179e-01	ks_quality_p_value=1	major_base=C	major_cov=43/18	major_frequency=7.821e-01	minor_base=A	minor_cov=0/17	new_cov=0/17	polymorphism_frequency=2.179e-01	polymorphism_score=11.9	prediction=polymorphism	ref_cov=43/18	total_cov=43/35
RA	4	.	1	58620	0	G	A	bias_e_value=0.000212813	bias_p_value=9.7926e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=186.1	fisher_strand_p_value=3.57973e-12	frequency=2.727e-01	ks_quality_p_value=1	major_base=G	major_cov=47/9	major_frequency=7.273e-01	minor_base=A	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=2.727e-01	polymorphism_score=19.7	prediction=polymorphism	ref_cov=47/9	total_cov=47/30
RA	5	.	1	59144	0	T	C	bias_e_value=2.16064e-08	bias_p_value=9.9422e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=250.7	fisher_strand_p_value=2.6981e-16	frequency=2.574e-01	ks_quality_p_value=1	major_base=T	major_cov=65/10	major_frequency=7.426e-01	minor_base=C	minor_cov=0/26	new_cov=0/26	polymorphism_frequency=2.574e-01	polymorphism_score=11.8	prediction=polymorphism	ref_cov=65/10	total_cov=65/37
RA	6	.	1	104909	0	A	G	bias_e_value=7.65366e-07	bias_p_value=3.52184e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=195.9	fisher_strand_p_value=1.06155e-14	frequency=2.368e-01	ks_quality_p_value=1	major_base=A	major_cov=3/55	major_frequency=7.632e-01	minor_base=G	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.368e-01	polymorphism_score=16.1	prediction=polymorphism	ref_cov=3/55	total_cov=24/55
RA	7	.	1	133144	0	C	T	bias_e_value=0.000507733	bias_p_value=2.33634e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=131.5	fisher_strand_p_value=8.83215e-12	frequency=2.712e-01	ks_quality_p_value=1	major_base=C	major_cov=3/40	major_frequency=7.288e-01	minor_base=T	minor_cov=16/0	new_cov=16/0	polymorphism_frequency=2.712e-01	polymorphism_score=11.4	prediction=polymorphism	ref_cov=3/40	total_cov=19/40
RA	8	.	1	139564	0	G	A	bias_e_value=0.0157443	bias_p_value=7.24473e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=166.3	fisher_strand_p_value=3.16738e-10	frequency=2.500e-01	ks_quality_p_value=1	major_base=G	major_cov=10/44	major_frequency=7.500e-01	minor_base=A	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.500e-01	polymorphism_score=14.7	prediction=polymorphism	ref_cov=10/44	total_cov=28/44
RA	9	.	1	156941	0	G	A	bias_e_value=2.36019e-05	bias_p_value=1.08604e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=201.7	fisher_strand_p_value=3.66474e-13	frequency=2.738e-01	ks_quality_p_value=1	major_base=G	major_cov=51/10	major_frequency=7.262e-01	minor_base=A	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=2.738e-01	polymorphism_score=15.2	prediction=polymorphism	ref_cov=51/10	total_cov=51/33
RA	10	.	1	157015	0	G	T	bias_e_value=0.0518315	bias_p_value=2.38503e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=169.8	fisher_strand_p_value=1.10289e-09	frequency=2.800e-01	ks_quality_p_value=1	major_base=G	major_cov=14/40	major_frequency=7.200e-01	minor_base=T	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.800e-01	polymorphism_score=10.7	prediction=polymorphism	ref_cov=14/40	total_cov=35/40
RA	11	.	1	162574	0	G	A	bias_e_value=0.0314993	bias_p_value=1.44944e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=165.4	fisher_strand_p_value=6.54457e-10	frequency=2.388e-01	ks_quality_p_value=1	major_base=G	major_cov=8/43	major_frequency=7.612e-01	minor_base=A	minor_cov=16/0	new_cov=16/0	polymorphism_frequency=2.388e-01	polymorphism_score=10.2	prediction=polymorphism	ref_cov=8/43	total_cov=24/43
RA	12	.	1	174434	0	T	A	bias_e_value=91.6871	bias_p_value=4.21899e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=147.3	fisher_strand_p_value=3.0818e-06	frequency=2.182e-01	ks_quality_p_value=1	major_base=T	major_cov=11/32	major_frequency=7.818e-01	minor_base=A	minor_cov=12/0	new_cov=12/0	polymorphism_frequency=2.182e-01	polymorphism_score=11.8	prediction=polymorphism	ref_cov=11/32	total_cov=23/32
RA	13	.	1	216833	0	C	G	bias_e_value=1.84449	bias_p_value=8.48743e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=169.5	fisher_strand_p_value=4.75162e-08	frequency=2.063e-01	ks_quality_p_value=1	major_base=C	major_cov=9/41	major_frequency=7.937e-01	minor_base=G	minor_cov=13/0	new_cov=13/0	polymorphism_frequency=2.063e-01	polymorphism_score=12.3	prediction=polymorphism	ref_cov=9/41	total_cov=24/41
RA	14	.	1	216881	0	C	A	bias_e_value=0.268503	bias_p_value=1.23552e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=204.5	fisher_strand_p_value=6.2095e-09	frequency=2.424e-01	ks_quality_p_value=1	major_base=C	major_cov=10/40	major_frequency=7.576e-01	minor_base=A	minor_cov=16/0	new_cov=16/0	polymorphism_frequency=2.424e-01	polymorphism_score=13.8	prediction=polymorphism	ref_cov=10/40	total_cov=26/40
RA	15	.	1	217603	0	C	A	bias_e_value=0.0242107	bias_p_value=1.11406e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=227.6	fisher_strand_p_value=5.00588e-10	frequency=2.442e-01	ks_quality_p_value=0.992515	major_base=C	major_cov=48/17	major_frequency=7.558e-01	minor_base=A	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=2.442e-01	polymorphism_score=19.7	prediction=polymorphism	ref_cov=48/17	total_cov=48/38
RA	16	.	1	217615	0	G	A	bias_e_value=0.101911	bias_p_value=4.68944e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=216.7	fisher_strand_p_value=2.24205e-09	frequency=2.273e-01	ks_quality_p_value=1	major_base=G	major_cov=49/19	major_frequency=7.727e-01	minor_base=A	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.273e-01	polymorphism_score=10.3	prediction=polymorphism	ref_cov=49/19	total_cov=49/39
RA	17	.	1	217647	0	G	T	bias_e_value=0.0408667	bias_p_value=1.88048e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=237.6	fisher_strand_p_value=8.59671e-10	frequency=2.118e-01	ks_quality_p_value=1	major_base=G	major_cov=52/15	major_frequency=7.882e-01	minor_base=T	minor_cov=0/18	new_cov=0/18	polymorphism_frequency=2.118e-01	polymorphism_score=14.3	prediction=polymorphism	ref_cov=52/15	total_cov=52/33
RA	18	.	1	241148	0	G	A	bias_e_value=0.146617	bias_p_value=6.7466e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=268.0	fisher_strand_p_value=3.28562e-09	frequency=2.000e-01	ks_quality_p_value=1	major_base=G	major_cov=56/24	major_frequency=8.000e-01	minor_base=A	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.000e-01	polymorphism_score=10.1	prediction=polymorphism	ref_cov=56/24	total_cov=56/45
RA	19	.	1	241228	0	T	A	bias_e_value=0.0369042	bias_p_value=1.69815e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=223.7	fisher_strand_p_value=7.72541e-10	frequency=2.333e-01	ks_quality_p_value=1	major_base=T	major_cov=50/19	major_frequency=7.667e-01	minor_base=A	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=2.333e-01	polymorphism_score=12.2	prediction=polymorphism	ref_cov=50/19	total_cov=50/40
RA	20	.	1	241241	0	C	A	bias_e_value=0.000228458	bias_p_value=1.05125e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=172.8	fisher_strand_p_value=3.85326e-12	frequency=3.000e-01	ks_quality_p_value=1	major_base=C	major_cov=47/16	major_frequency=7.000e-01	minor_base=A	minor_cov=0/27	new_cov=0/27	polymorphism_frequency=3.000e-01	polymorphism_score=27.9	prediction=polymorphism	ref_cov=47/16	total_cov=47/43
RA	21	.	1	241254	0	A	C	bias_e_value=6.95879e-08	bias_p_value=3.20209e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=178.8	fisher_strand_p_value=8.98302e-16	frequency=3.736e-01	ks_quality_p_value=1	major_base=A	major_cov=46/11	major_frequency=6.264e-01	minor_base=C	minor_cov=0/34	new_cov=0/34	polymorphism_frequency=3.736e-01	polymorphism_score=13.0	prediction=polymorphism	ref_cov=46/11	total_cov=46/45
RA	22	.	1	247569	0	T	A	bias_e_value=0.0342131	bias_p_value=1.57432e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=157.5	fisher_strand_p_value=7.13632e-10	frequency=2.667e-01	ks_quality_p_value=1	major_base=T	major_cov=13/42	major_frequency=7.333e-01	minor_base=A	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.667e-01	polymorphism_score=10.2	prediction=polymorphism	ref_cov=13/42	total_cov=33/45
RA	23	.	1	247577	0	G	A	bias_e_value=0.0804388	bias_p_value=3.70139e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=159.1	fisher_strand_p_value=1.74889e-09	frequency=2.267e-01	ks_quality_p_value=1	major_base=G	major_cov=12/46	major_frequency=7.733e-01	minor_base=A	minor_cov=17/0	new_cov=17/0	polymorphism_frequency=2.267e-01	polymorphism_score=11.0	prediction=polymorphism	ref_cov=12/46	total_cov=30/46
RA	24	.	1	283664	0	T	G	bias_e_value=0.0014253	bias_p_value=6.55854e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=245.6	fisher_strand_p_value=2.58424e-11	frequency=2.209e-01	ks_quality_p_value=1	major_base=T	major_cov=12/55	major_frequency=7.791e-01	minor_base=G	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.209e-01	polymorphism_score=10.0	prediction=polymorphism	ref_cov=12/55	total_cov=31/55
RA	25	.	1	284392	0	C	A	bias_e_value=1.36639e-07	bias_p_value=6.28747e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=297.8	fisher_strand_p_value=1.79891e-15	frequency=2.308e-01	ks_quality_p_value=1	major_base=C	major_cov=11/69	major_frequency=7.692e-01	minor_base=A	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.308e-01	polymorphism_score=20.0	prediction=polymorphism	ref_cov=11/69	total_cov=35/69
RA	26	.	1	300866	0	T	A	bias_e_value=2.51666	bias_p_value=1.15804e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=207.9	fisher_strand_p_value=6.60498e-08	frequency=2.174e-01	ks_quality_p_value=1	major_base=T	major_cov=41/13	major_frequency=7.826e-01	minor_base=A	minor_cov=0/15	new_cov=0/15	polymorphism_frequency=2.174e-01	polymorphism_score=10.9	prediction=polymorphism	ref_cov=41/13	total_cov=41/28
RA	27	.	1	300882	0	T	C	bias_e_value=4.58104	bias_p_value=2.10797e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=183.5	fisher_strand_p_value=1.24755e-07	frequency=2.121e-01	ks_quality_p_value=1	major_base=T	major_cov=40/12	major_frequency=7.879e-01	minor_base=C	minor_cov=0/14	new_cov=0/14	polymorphism_frequency=2.121e-01	polymorphism_score=10.1	prediction=polymorphism	ref_cov=40/12	total_cov=40/30
RA	28	.	1	362521	0	C	A	bias_e_value=5.25468e-08	bias_p_value=2.41794e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=309.3	fisher_strand_p_value=6.72866e-16	frequency=2.041e-01	ks_quality_p_value=1	major_base=C	major_cov=72/6	major_frequency=7.959e-01	minor_base=A	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.041e-01	polymorphism_score=12.2	prediction=polymorphism	ref_cov=72/6	total_cov=72/26
RA	29	.	1	366831	0	T	A	bias_e_value=0.192528	bias_p_value=8.85919e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=213.1	fisher_strand_p_value=4.40429e-09	frequency=2.099e-01	ks_quality_p_value=0.993463	major_base=T	major_cov=49/15	major_frequency=7.901e-01	minor_base=A	minor_cov=0/17	new_cov=0/17	polymorphism_frequency=2.099e-01	polymorphism_score=11.8	prediction=polymorphism	ref_cov=49/15	total_cov=49/32
RA	30	.	1	378263	0	A	C	bias_e_value=0.0131293	bias_p_value=6.04147e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=407.5	fisher_strand_p_value=2.61957e-10	frequency=2.158e-01	ks_quality_p_value=1	major_base=A	major_cov=65/44	major_frequency=7.842e-01	minor_base=C	minor_cov=0/30	new_cov=0/30	polymorphism_frequency=2.158e-01	polymorphism_score=10.6	prediction=polymorphism	ref_cov=65/44	total_cov=65/74
RA	31	.	1	378326	0	A	C	bias_e_value=4.29687e-05	bias_p_value=1.97721e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=343.9	fisher_strand_p_value=6.81454e-13	frequency=2.154e-01	ks_quality_p_value=1	major_base=A	major_cov=73/29	major_frequency=7.846e-01	minor_base=C	minor_cov=0/28	new_cov=0/28	polymorphism_frequency=2.154e-01	polymorphism_score=15.2	prediction=polymorphism	ref_cov=73/29	total_cov=73/57
RA	32	.	1	384169	0	C	A	bias_e_value=0.640264	bias_p_value=2.94618e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=202.6	fisher_strand_p_value=1.55217e-08	frequency=2.727e-01	ks_quality_p_value=1	major_base=C	major_cov=24/40	major_frequency=7.273e-01	minor_base=A	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.727e-01	polymorphism_score=17.3	prediction=polymorphism	ref_cov=24/40	total_cov=48/40
RA	33	.	1	384177	0	T	A	bias_e_value=48.7469	bias_p_value=2.24309e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=208.9	fisher_strand_p_value=1.57032e-06	frequency=2.069e-01	ks_quality_p_value=0.994021	major_base=T	major_cov=28/41	major_frequency=7.931e-01	minor_base=A	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.069e-01	polymorphism_score=10.3	prediction=polymorphism	ref_cov=28/41	total_cov=49/41
RA	34	.	1	384182	0	A	G	bias_e_value=1.44053	bias_p_value=6.6286e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=193.1	fisher_strand_p_value=3.65737e-08	frequency=2.584e-01	ks_quality_p_value=1	major_base=A	major_cov=25/41	major_frequency=7.416e-01	minor_base=G	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.584e-01	polymorphism_score=12.0	prediction=polymorphism	ref_cov=25/41	total_cov=49/41
RA	35	.	1	384194	0	T	A	bias_e_value=0.0107114	bias_p_value=4.92884e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=169.4	fisher_strand_p_value=2.1176e-10	frequency=3.256e-01	ks_quality_p_value=1	major_base=T	major_cov=19/39	major_frequency=6.744e-01	minor_base=A	minor_cov=28/0	new_cov=28/0	polymorphism_frequency=3.256e-01	polymorphism_score=16.0	prediction=polymorphism	ref_cov=19/39	total_cov=48/39
RA	36	.	1	384205	0	G	A	bias_e_value=1.26823e-06	bias_p_value=5.83575e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=109.8	fisher_strand_p_value=1.78706e-14	frequency=4.000e-01	ks_quality_p_value=1	major_base=G	major_cov=11/40	major_frequency=6.000e-01	minor_base=A	minor_cov=34/0	new_cov=34/0	polymorphism_frequency=4.000e-01	polymorphism_score=47.1	prediction=polymorphism	ref_cov=11/40	total_cov=45/40
RA	37	.	1	384222	0	C	A	bias_e_value=0.0424188	bias_p_value=1.9519e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=207.9	fisher_strand_p_value=8.93916e-10	frequency=3.095e-01	ks_quality_p_value=1	major_base=C	major_cov=19/39	major_frequency=6.905e-01	minor_base=A	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=3.095e-01	polymorphism_score=18.8	prediction=polymorphism	ref_cov=19/39	total_cov=45/39
RA	38	.	1	384227	0	T	A	bias_e_value=0.0370077	bias_p_value=1.70291e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=170.8	fisher_strand_p_value=7.74812e-10	frequency=3.038e-01	ks_quality_p_value=1	major_base=T	major_cov=16/39	major_frequency=6.962e-01	minor_base=A	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=3.038e-01	polymorphism_score=13.8	prediction=polymorphism	ref_cov=16/39	total_cov=42/39
RA	39	.	1	384256	0	G	A	bias_e_value=0.79453	bias_p_value=3.65603e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=182.4	fisher_strand_p_value=1.94956e-08	frequency=2.500e-01	ks_quality_p_value=1	major_base=G	major_cov=19/41	major_frequency=7.500e-01	minor_base=A	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.500e-01	polymorphism_score=17.6	prediction=polymorphism	ref_cov=19/41	total_cov=41/41
RA	40	.	1	391908	0	G	A	bias_e_value=0.0119067	bias_p_value=5.47888e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=251.0	fisher_strand_p_value=2.36516e-10	frequency=2.245e-01	ks_quality_p_value=1	major_base=G	major_cov=55/21	major_frequency=7.755e-01	minor_base=A	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.245e-01	polymorphism_score=14.2	prediction=polymorphism	ref_cov=55/21	total_cov=55/43
RA	41	.	1	391959	0	T	C	bias_e_value=3.25283e-07	bias_p_value=1.49679e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=223.2	fisher_strand_p_value=4.39479e-15	frequency=2.872e-01	ks_quality_p_value=1	major_base=T	major_cov=56/11	major_frequency=7.128e-01	minor_base=C	minor_cov=0/27	new_cov=0/27	polymorphism_frequency=2.872e-01	polymorphism_score=18.2	prediction=polymorphism	ref_cov=56/11	total_cov=56/38
RA	42	.	1	398750	0	A	G	bias_e_value=0.339043	bias_p_value=1.56011e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=231.8	fisher_strand_p_value=7.93888e-09	frequency=2.371e-01	ks_quality_p_value=1	major_base=A	major_cov=26/48	major_frequency=7.629e-01	minor_base=G	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.371e-01	polymorphism_score=12.9	prediction=polymorphism	ref_cov=26/48	total_cov=49/48
RA	43	.	1	398784	0	C	T	bias_e_value=0.0656687	bias_p_value=3.02175e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=218.9	fisher_strand_p_value=1.41354e-09	frequency=2.299e-01	ks_quality_p_value=1	major_base=C	major_cov=18/49	major_frequency=7.701e-01	minor_base=T	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.299e-01	polymorphism_score=10.4	prediction=polymorphism	ref_cov=18/49	total_cov=39/49
RA	44	.	1	425295	0	C	T	bias_e_value=0.592362	bias_p_value=2.72576e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=126.4	fisher_strand_p_value=1.42986e-08	frequency=3.409e-01	ks_quality_p_value=1	major_base=C	major_cov=25/33	major_frequency=6.591e-01	minor_base=T	minor_cov=30/0	new_cov=30/0	polymorphism_frequency=3.409e-01	polymorphism_score=25.9	prediction=polymorphism	ref_cov=25/33	total_cov=55/33
RA	45	.	1	425302	0	C	T	bias_e_value=1.39677	bias_p_value=6.42723e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=143.4	fisher_strand_p_value=3.53989e-08	frequency=3.218e-01	ks_quality_p_value=1	major_base=C	major_cov=25/34	major_frequency=6.782e-01	minor_base=T	minor_cov=28/0	new_cov=28/0	polymorphism_frequency=3.218e-01	polymorphism_score=21.9	prediction=polymorphism	ref_cov=25/34	total_cov=53/34
RA	46	.	1	425311	0	A	T	bias_e_value=0.00067244	bias_p_value=3.09424e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=137.2	fisher_strand_p_value=1.18279e-11	frequency=3.736e-01	ks_quality_p_value=1	major_base=A	major_cov=19/38	major_frequency=6.264e-01	minor_base=T	minor_cov=34/0	new_cov=34/0	polymorphism_frequency=3.736e-01	polymorphism_score=41.7	prediction=polymorphism	ref_cov=19/38	total_cov=53/38
RA	47	.	1	425323	0	T	G	bias_e_value=0.000145503	bias_p_value=6.69535e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=172.5	fisher_strand_p_value=2.41271e-12	frequency=3.667e-01	ks_quality_p_value=1	major_base=T	major_cov=17/40	major_frequency=6.333e-01	minor_base=G	minor_cov=33/0	new_cov=33/0	polymorphism_frequency=3.667e-01	polymorphism_score=21.6	prediction=polymorphism	ref_cov=17/40	total_cov=50/40
RA	48	.	1	425325	0	A	G	bias_e_value=0.30348	bias_p_value=1.39647e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=200.1	fisher_strand_p_value=7.0642e-09	frequency=2.660e-01	ks_quality_p_value=1	major_base=A	major_cov=26/43	major_frequency=7.340e-01	minor_base=G	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.660e-01	polymorphism_score=16.4	prediction=polymorphism	ref_cov=26/43	total_cov=51/43
RA	49	.	1	425340	0	C	T	bias_e_value=0.00630154	bias_p_value=2.89966e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=189.7	fisher_strand_p_value=1.21683e-10	frequency=3.093e-01	ks_quality_p_value=1	major_base=C	major_cov=23/44	major_frequency=6.907e-01	minor_base=T	minor_cov=30/0	new_cov=30/0	polymorphism_frequency=3.093e-01	polymorphism_score=19.5	prediction=polymorphism	ref_cov=23/44	total_cov=53/44
RA	50	.	1	425365	0	C	T	bias_e_value=0.00835245	bias_p_value=3.84338e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=211.7	fisher_strand_p_value=1.63302e-10	frequency=3.093e-01	ks_quality_p_value=1	major_base=C	major_cov=24/43	major_frequency=6.907e-01	minor_base=T	minor_cov=30/0	new_cov=30/0	polymorphism_frequency=3.093e-01	polymorphism_score=24.8	prediction=polymorphism	ref_cov=24/43	total_cov=55/43
RA	51	.	1	446969	0	C	T	bias_e_value=0.000297998	bias_p_value=1.37124e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=89.4	fisher_strand_p_value=5.07749e-12	frequency=3.265e-01	ks_quality_p_value=1	major_base=C	major_cov=1/32	major_frequency=6.735e-01	minor_base=T	minor_cov=16/0	new_cov=16/0	polymorphism_frequency=3.265e-01	polymorphism_score=10.9	prediction=polymorphism	ref_cov=1/32	total_cov=18/32
RA	52	.	1	448334	0	G	A	bias_e_value=0.0118158	bias_p_value=5.43703e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=237.6	fisher_strand_p_value=2.34627e-10	frequency=2.212e-01	ks_quality_p_value=1	major_base=G	major_cov=57/24	major_frequency=7.788e-01	minor_base=A	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=2.212e-01	polymorphism_score=11.5	prediction=polymorphism	ref_cov=57/24	total_cov=57/47
RA	53	.	1	448341	0	G	A	bias_e_value=1.21577e-10	bias_p_value=5.59437e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=194.3	fisher_strand_p_value=1.32682e-18	frequency=3.564e-01	ks_quality_p_value=1	major_base=G	major_cov=55/10	major_frequency=6.436e-01	minor_base=A	minor_cov=0/36	new_cov=0/36	polymorphism_frequency=3.564e-01	polymorphism_score=31.1	prediction=polymorphism	ref_cov=55/10	total_cov=55/46
RA	54	.	1	448347	0	A	C	bias_e_value=0.000462539	bias_p_value=2.12838e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=244.4	fisher_strand_p_value=8.01663e-12	frequency=2.600e-01	ks_quality_p_value=1	major_base=A	major_cov=54/20	major_frequency=7.400e-01	minor_base=C	minor_cov=0/26	new_cov=0/26	polymorphism_frequency=2.600e-01	polymorphism_score=18.6	prediction=polymorphism	ref_cov=54/20	total_cov=54/46
RA	55	.	1	468300	0	G	A	bias_e_value=3.69601e-05	bias_p_value=1.70072e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=201.5	fisher_strand_p_value=5.83027e-13	frequency=2.530e-01	ks_quality_p_value=1	major_base=G	major_cov=53/9	major_frequency=7.470e-01	minor_base=A	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=2.530e-01	polymorphism_score=14.2	prediction=polymorphism	ref_cov=53/9	total_cov=53/30
RA	56	.	1	468332	0	T	C	bias_e_value=0.00064527	bias_p_value=2.96921e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=188.4	fisher_strand_p_value=1.13314e-11	frequency=2.532e-01	ks_quality_p_value=1	major_base=T	major_cov=49/10	major_frequency=7.468e-01	minor_base=C	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.532e-01	polymorphism_score=11.6	prediction=polymorphism	ref_cov=49/10	total_cov=49/30
RA	57	.	1	479202	0	A	G	bias_e_value=0.0490444	bias_p_value=2.25678e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=297.8	fisher_strand_p_value=1.04079e-09	frequency=2.177e-01	ks_quality_p_value=1	major_base=A	major_cov=38/59	major_frequency=7.823e-01	minor_base=G	minor_cov=27/0	new_cov=27/0	polymorphism_frequency=2.177e-01	polymorphism_score=11.5	prediction=polymorphism	ref_cov=38/59	total_cov=70/59
RA	58	.	1	483049	0	A	G	bias_e_value=0.101187	bias_p_value=4.65612e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=195.0	fisher_strand_p_value=2.22532e-09	frequency=2.078e-01	ks_quality_p_value=1	major_base=A	major_cov=12/49	major_frequency=7.922e-01	minor_base=G	minor_cov=16/0	new_cov=16/0	polymorphism_frequency=2.078e-01	polymorphism_score=13.4	prediction=polymorphism	ref_cov=12/49	total_cov=29/49
RA	59	.	1	483105	0	C	T	bias_e_value=0.0144443	bias_p_value=6.64655e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=195.4	fisher_strand_p_value=2.89445e-10	frequency=2.564e-01	ks_quality_p_value=1	major_base=C	major_cov=13/45	major_frequency=7.436e-01	minor_base=T	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.564e-01	polymorphism_score=17.9	prediction=polymorphism	ref_cov=13/45	total_cov=33/45
RA	60	.	1	483142	0	C	T	bias_e_value=9.05894	bias_p_value=4.16848e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=210.0	fisher_strand_p_value=2.57772e-07	frequency=2.133e-01	ks_quality_p_value=1	major_base=C	major_cov=18/41	major_frequency=7.867e-01	minor_base=T	minor_cov=16/0	new_cov=16/0	polymorphism_frequency=2.133e-01	polymorphism_score=12.9	prediction=polymorphism	ref_cov=18/41	total_cov=34/41
RA	61	.	1	492787	0	C	T	bias_e_value=0.279292	bias_p_value=1.28516e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=213.1	fisher_strand_p_value=6.47252e-09	frequency=2.209e-01	ks_quality_p_value=1	major_base=C	major_cov=48/19	major_frequency=7.791e-01	minor_base=T	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=2.209e-01	polymorphism_score=14.8	prediction=polymorphism	ref_cov=48/19	total_cov=48/38
RA	62	.	1	527361	0	G	A	bias_e_value=6.35803e-11	bias_p_value=2.92565e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=202.0	fisher_strand_p_value=6.83122e-19	frequency=2.273e-01	ks_quality_p_value=1	major_base=G	major_cov=1/67	major_frequency=7.727e-01	minor_base=A	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.273e-01	polymorphism_score=43.3	prediction=polymorphism	ref_cov=1/67	total_cov=21/67
RA	63	.	1	531794	0	A	T	bias_e_value=1.30149e-06	bias_p_value=5.9888e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=272.1	fisher_strand_p_value=1.83543e-14	frequency=2.549e-01	ks_quality_p_value=1	major_base=A	major_cov=62/14	major_frequency=7.451e-01	minor_base=T	minor_cov=0/26	new_cov=0/26	polymorphism_frequency=2.549e-01	polymorphism_score=10.1	prediction=polymorphism	ref_cov=62/14	total_cov=62/40
RA	64	.	1	548198	0	T	G	bias_e_value=6.77235e-06	bias_p_value=3.1163e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=160.1	fisher_strand_p_value=1.00766e-13	frequency=3.933e-01	ks_quality_p_value=1	major_base=T	major_cov=14/40	major_frequency=6.067e-01	minor_base=G	minor_cov=35/0	new_cov=35/0	polymorphism_frequency=3.933e-01	polymorphism_score=19.7	prediction=polymorphism	ref_cov=14/40	total_cov=50/40
RA	65	.	1	548211	0	C	T	bias_e_value=0.000578969	bias_p_value=2.66413e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=132.1	fisher_strand_p_value=1.01236e-11	frequency=3.614e-01	ks_quality_p_value=1	major_base=C	major_cov=15/38	major_frequency=6.386e-01	minor_base=T	minor_cov=30/0	new_cov=30/0	polymorphism_frequency=3.614e-01	polymorphism_score=30.0	prediction=polymorphism	ref_cov=15/38	total_cov=46/38
RA	66	.	1	548247	0	G	T	bias_e_value=1.00692e-05	bias_p_value=4.63333e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=178.2	fisher_strand_p_value=1.51833e-13	frequency=3.333e-01	ks_quality_p_value=1	major_base=G	major_cov=16/48	major_frequency=6.667e-01	minor_base=T	minor_cov=32/0	new_cov=32/0	polymorphism_frequency=3.333e-01	polymorphism_score=36.7	prediction=polymorphism	ref_cov=16/48	total_cov=48/48
RA	67	.	1	578332	0	C	A	bias_e_value=3.12236	bias_p_value=1.43675e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=172.0	fisher_strand_p_value=8.30299e-08	frequency=2.540e-01	ks_quality_p_value=1	major_base=C	major_cov=35/12	major_frequency=7.460e-01	minor_base=A	minor_cov=0/16	new_cov=0/16	polymorphism_frequency=2.540e-01	polymorphism_score=12.3	prediction=polymorphism	ref_cov=35/12	total_cov=35/28
RA	68	.	1	578356	0	G	A	bias_e_value=0.0831357	bias_p_value=3.82549e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=154.5	fisher_strand_p_value=1.81048e-09	frequency=2.857e-01	ks_quality_p_value=1	major_base=G	major_cov=36/9	major_frequency=7.143e-01	minor_base=A	minor_cov=0/18	new_cov=0/18	polymorphism_frequency=2.857e-01	polymorphism_score=11.0	prediction=polymorphism	ref_cov=36/9	total_cov=36/27
RA	69	.	1	583564	0	C	T	bias_e_value=0.00161998	bias_p_value=7.45433e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=270.4	fisher_strand_p_value=2.96751e-11	frequency=2.000e-01	ks_quality_p_value=0.995012	major_base=C	major_cov=63/17	major_frequency=8.000e-01	minor_base=T	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.000e-01	polymorphism_score=14.7	prediction=polymorphism	ref_cov=63/17	total_cov=63/37
RA	70	.	1	585253	0	G	A	bias_e_value=15.2339	bias_p_value=7.00989e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=250.1	fisher_strand_p_value=4.48877e-07	frequency=2.079e-01	ks_quality_p_value=1	major_base=G	major_cov=34/46	major_frequency=7.921e-01	minor_base=A	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.079e-01	polymorphism_score=18.7	prediction=polymorphism	ref_cov=34/46	total_cov=57/46
RA	71	.	1	590632	0	G	T	bias_e_value=0.0019339	bias_p_value=8.89884e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=240.5	fisher_strand_p_value=3.55084e-11	frequency=2.727e-01	ks_quality_p_value=1	major_base=G	major_cov=22/50	major_frequency=7.273e-01	minor_base=T	minor_cov=27/0	new_cov=27/0	polymorphism_frequency=2.727e-01	polymorphism_score=13.8	prediction=polymorphism	ref_cov=22/50	total_cov=55/50
RA	72	.	1	590660	0	C	A	bias_e_value=1.04114	bias_p_value=4.79083e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=281.6	fisher_strand_p_value=2.59421e-08	frequency=2.083e-01	ks_quality_p_value=1	major_base=C	major_cov=26/50	major_frequency=7.917e-01	minor_base=A	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.083e-01	polymorphism_score=11.2	prediction=polymorphism	ref_cov=26/50	total_cov=46/50
RA	73	.	1	611104	0	G	T	bias_e_value=0.356534	bias_p_value=1.64059e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=164.2	fisher_strand_p_value=8.37101e-09	frequency=2.785e-01	ks_quality_p_value=1	major_base=G	major_cov=18/39	major_frequency=7.215e-01	minor_base=T	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.785e-01	polymorphism_score=18.4	prediction=polymorphism	ref_cov=18/39	total_cov=40/39
RA	74	.	1	623448	0	A	C	bias_e_value=0.464986	bias_p_value=2.13964e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=251.0	fisher_strand_p_value=1.10756e-08	frequency=2.022e-01	ks_quality_p_value=1	major_base=A	major_cov=20/51	major_frequency=7.978e-01	minor_base=C	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.022e-01	polymorphism_score=10.3	prediction=polymorphism	ref_cov=20/51	total_cov=39/51
RA	75	.	1	623520	0	A	T	bias_e_value=0.181774	bias_p_value=8.36435e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=266.2	fisher_strand_p_value=4.1188e-09	frequency=2.198e-01	ks_quality_p_value=1	major_base=A	major_cov=21/50	major_frequency=7.802e-01	minor_base=T	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.198e-01	polymorphism_score=22.2	prediction=polymorphism	ref_cov=21/50	total_cov=43/50
RA	76	.	1	630181	0	T	G	bias_e_value=4.56749e-05	bias_p_value=2.10173e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=231.4	fisher_strand_p_value=7.25956e-13	frequency=3.043e-01	ks_quality_p_value=1	major_base=T	major_cov=27/53	major_frequency=6.957e-01	minor_base=G	minor_cov=35/0	new_cov=35/0	polymorphism_frequency=3.043e-01	polymorphism_score=25.5	prediction=polymorphism	ref_cov=27/53	total_cov=62/53
RA	77	.	1	654002	0	G	A	bias_e_value=44.5216	bias_p_value=2.04867e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=183.4	fisher_strand_p_value=1.41603e-06	frequency=2.333e-01	ks_quality_p_value=1	major_base=G	major_cov=31/38	major_frequency=7.667e-01	minor_base=A	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.333e-01	polymorphism_score=17.3	prediction=polymorphism	ref_cov=31/38	total_cov=52/38
RA	78	.	1	660177	0	A	G	bias_e_value=0.000168578	bias_p_value=7.75711e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=193.8	fisher_strand_p_value=2.81079e-12	frequency=3.365e-01	ks_quality_p_value=1	major_base=A	major_cov=23/46	major_frequency=6.635e-01	minor_base=G	minor_cov=35/0	new_cov=35/0	polymorphism_frequency=3.365e-01	polymorphism_score=14.9	prediction=polymorphism	ref_cov=23/46	total_cov=58/46
RA	79	.	1	685219	0	T	G	bias_e_value=5.12764e-11	bias_p_value=2.35948e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=261.9	fisher_strand_p_value=5.48108e-19	frequency=3.077e-01	ks_quality_p_value=1	major_base=T	major_cov=9/63	major_frequency=6.923e-01	minor_base=G	minor_cov=32/0	new_cov=32/0	polymorphism_frequency=3.077e-01	polymorphism_score=16.6	prediction=polymorphism	ref_cov=9/63	total_cov=41/63
RA	80	.	1	685236	0	G	T	bias_e_value=5.12764e-11	bias_p_value=2.35948e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=244.5	fisher_strand_p_value=5.48108e-19	frequency=3.077e-01	ks_quality_p_value=1	major_base=G	major_cov=9/63	major_frequency=6.923e-01	minor_base=T	minor_cov=32/0	new_cov=32/0	polymorphism_frequency=3.077e-01	polymorphism_score=29.9	prediction=polymorphism	ref_cov=9/63	total_cov=41/63
RA	81	.	1	685256	0	C	T	bias_e_value=1.72398e-06	bias_p_value=7.93288e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=236.8	fisher_strand_p_value=2.45305e-14	frequency=2.617e-01	ks_quality_p_value=1	major_base=C	major_cov=17/62	major_frequency=7.383e-01	minor_base=T	minor_cov=28/0	new_cov=28/0	polymorphism_frequency=2.617e-01	polymorphism_score=22.3	prediction=polymorphism	ref_cov=17/62	total_cov=45/62
RA	82	.	1	710710	0	G	A	bias_e_value=0.0196417	bias_p_value=9.03812e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=145.0	fisher_strand_p_value=3.99182e-10	frequency=2.879e-01	ks_quality_p_value=1	major_base=G	major_cov=38/9	major_frequency=7.121e-01	minor_base=A	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=2.879e-01	polymorphism_score=12.8	prediction=polymorphism	ref_cov=38/9	total_cov=38/28
RA	83	.	1	749306	0	A	T	bias_e_value=0.000477155	bias_p_value=2.19563e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=151.4	fisher_strand_p_value=8.28004e-12	frequency=3.704e-01	ks_quality_p_value=1	major_base=A	major_cov=14/37	major_frequency=6.296e-01	minor_base=T	minor_cov=30/0	new_cov=30/0	polymorphism_frequency=3.704e-01	polymorphism_score=30.3	prediction=polymorphism	ref_cov=14/37	total_cov=44/37
RA	84	.	1	749325	0	C	T	bias_e_value=0.00711839	bias_p_value=3.27553e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=144.2	fisher_strand_p_value=1.38194e-10	frequency=3.333e-01	ks_quality_p_value=1	major_base=C	major_cov=13/37	major_frequency=6.667e-01	minor_base=T	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=3.333e-01	polymorphism_score=18.9	prediction=polymorphism	ref_cov=13/37	total_cov=39/37
RA	85	.	1	765139	0	G	T	bias_e_value=58.5723	bias_p_value=2.69521e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=116.3	fisher_strand_p_value=1.90168e-06	frequency=2.951e-01	ks_quality_p_value=1	major_base=G	major_cov=16/27	major_frequency=7.049e-01	minor_base=T	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.951e-01	polymorphism_score=11.0	prediction=polymorphism	ref_cov=16/27	total_cov=34/27
RA	86	.	1	781922	0	T	C	bias_e_value=0.000227514	bias_p_value=1.04691e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=196.5	fisher_strand_p_value=3.83673e-12	frequency=2.368e-01	ks_quality_p_value=1	major_base=T	major_cov=7/51	major_frequency=7.632e-01	minor_base=C	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.368e-01	polymorphism_score=13.5	prediction=polymorphism	ref_cov=7/51	total_cov=25/51
RA	87	.	1	781938	0	G	A	bias_e_value=0.00229711	bias_p_value=1.05702e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=214.6	fisher_strand_p_value=4.27633e-11	frequency=2.051e-01	ks_quality_p_value=0.993405	major_base=G	major_cov=8/54	major_frequency=7.949e-01	minor_base=A	minor_cov=16/0	new_cov=16/0	polymorphism_frequency=2.051e-01	polymorphism_score=12.6	prediction=polymorphism	ref_cov=8/54	total_cov=24/54
RA	88	.	1	785056	0	G	A	bias_e_value=0.0686747	bias_p_value=3.16007e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=195.1	fisher_strand_p_value=1.4815e-09	frequency=2.381e-01	ks_quality_p_value=1	major_base=G	major_cov=47/17	major_frequency=7.619e-01	minor_base=A	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.381e-01	polymorphism_score=10.2	prediction=polymorphism	ref_cov=47/17	total_cov=47/37
RA	89	.	1	785060	0	G	A	bias_e_value=0.00521842	bias_p_value=2.40126e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=182.2	fisher_strand_p_value=9.99424e-11	frequency=2.619e-01	ks_quality_p_value=1	major_base=G	major_cov=47/15	major_frequency=7.381e-01	minor_base=A	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.619e-01	polymorphism_score=17.2	prediction=polymorphism	ref_cov=47/15	total_cov=47/37
RA	90	.	1	785080	0	T	C	bias_e_value=0.108378	bias_p_value=4.987e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=201.6	fisher_strand_p_value=2.3917e-09	frequency=2.353e-01	ks_quality_p_value=1	major_base=T	major_cov=47/18	major_frequency=7.647e-01	minor_base=C	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.353e-01	polymorphism_score=14.8	prediction=polymorphism	ref_cov=47/18	total_cov=47/39
RA	91	.	1	789271	0	A	T	bias_e_value=1.74157	bias_p_value=8.01384e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=159.3	fisher_strand_p_value=4.47125e-08	frequency=2.571e-01	ks_quality_p_value=1	major_base=A	major_cov=15/37	major_frequency=7.429e-01	minor_base=T	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.571e-01	polymorphism_score=11.1	prediction=polymorphism	ref_cov=15/37	total_cov=34/37
RA	92	.	1	789295	0	G	A	bias_e_value=1.65286e-05	bias_p_value=7.60564e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=113.1	fisher_strand_p_value=2.53492e-13	frequency=3.500e-01	ks_quality_p_value=1	major_base=G	major_cov=3/36	major_frequency=6.500e-01	minor_base=A	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=3.500e-01	polymorphism_score=22.9	prediction=polymorphism	ref_cov=3/36	total_cov=24/36
RA	93	.	1	795375	0	C	T	bias_e_value=6.46582e-07	bias_p_value=2.97525e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=172.6	fisher_strand_p_value=9.01166e-15	frequency=2.976e-01	ks_quality_p_value=0.989962	major_base=C	major_cov=8/51	major_frequency=7.024e-01	minor_base=T	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.976e-01	polymorphism_score=21.5	prediction=polymorphism	ref_cov=8/51	total_cov=35/51
RA	94	.	1	795437	0	A	G	bias_e_value=0.267029	bias_p_value=1.22873e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=208.4	fisher_strand_p_value=6.17362e-09	frequency=2.625e-01	ks_quality_p_value=1	major_base=A	major_cov=18/41	major_frequency=7.375e-01	minor_base=G	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.625e-01	polymorphism_score=13.1	prediction=polymorphism	ref_cov=18/41	total_cov=39/41
RA	95	.	1	795456	0	C	T	bias_e_value=0.606082	bias_p_value=2.78889e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=229.8	fisher_strand_p_value=1.46483e-08	frequency=2.118e-01	ks_quality_p_value=1	major_base=C	major_cov=19/48	major_frequency=7.882e-01	minor_base=T	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.118e-01	polymorphism_score=14.4	prediction=polymorphism	ref_cov=19/48	total_cov=37/48
RA	96	.	1	805056	0	C	T	bias_e_value=0.287677	bias_p_value=1.32375e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=113.3	fisher_strand_p_value=6.67731e-09	frequency=2.500e-01	ks_quality_p_value=1	major_base=C	major_cov=36/6	major_frequency=7.500e-01	minor_base=T	minor_cov=0/14	new_cov=0/14	polymorphism_frequency=2.500e-01	polymorphism_score=14.8	prediction=polymorphism	ref_cov=36/6	total_cov=36/20
RA	97	.	1	863092	0	G	A	consensus_score=161.3	frequency=1	major_base=A	major_cov=16/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/23
RA	98	.	1	871990	0	C	T	bias_e_value=0.114537	bias_p_value=5.27041e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=126.6	fisher_strand_p_value=2.53468e-09	frequency=2.903e-01	ks_quality_p_value=1	major_base=C	major_cov=35/9	major_frequency=7.097e-01	minor_base=T	minor_cov=0/18	new_cov=0/18	polymorphism_frequency=2.903e-01	polymorphism_score=19.8	prediction=polymorphism	ref_cov=35/9	total_cov=35/27
RA	99	.	1	892558	0	G	A	bias_e_value=0.00378049	bias_p_value=1.73959e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=145.3	fisher_strand_p_value=7.1404e-11	frequency=3.243e-01	ks_quality_p_value=1	major_base=G	major_cov=12/38	major_frequency=6.757e-01	minor_base=A	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=3.243e-01	polymorphism_score=28.4	prediction=polymorphism	ref_cov=12/38	total_cov=37/38
RA	100	.	1	892561	0	C	A	bias_e_value=6.62917	bias_p_value=3.05041e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=210.3	fisher_strand_p_value=1.84831e-07	frequency=2.533e-01	ks_quality_p_value=1	major_base=C	major_cov=19/37	major_frequency=7.467e-01	minor_base=A	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.533e-01	polymorphism_score=10.6	prediction=polymorphism	ref_cov=19/37	total_cov=38/37
RA	101	.	1	892572	0	A	T	bias_e_value=0.106453	bias_p_value=4.89846e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=173.1	fisher_strand_p_value=2.34712e-09	frequency=3.247e-01	ks_quality_p_value=1	major_base=A	major_cov=17/35	major_frequency=6.753e-01	minor_base=T	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=3.247e-01	polymorphism_score=20.1	prediction=polymorphism	ref_cov=17/35	total_cov=42/35
RA	102	.	1	911408	0	C	T	bias_e_value=1.21626e-10	bias_p_value=5.59664e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=197.0	fisher_strand_p_value=1.32737e-18	frequency=2.921e-01	ks_quality_p_value=1	major_base=C	major_cov=4/59	major_frequency=7.079e-01	minor_base=T	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=2.921e-01	polymorphism_score=16.0	prediction=polymorphism	ref_cov=4/59	total_cov=30/59
RA	103	.	1	911411	0	A	G	bias_e_value=2.97747e-06	bias_p_value=1.37008e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=217.2	fisher_strand_p_value=4.31185e-14	frequency=2.386e-01	ks_quality_p_value=1	major_base=A	major_cov=8/59	major_frequency=7.614e-01	minor_base=G	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.386e-01	polymorphism_score=18.1	prediction=polymorphism	ref_cov=8/59	total_cov=30/59
RA	104	.	1	911440	0	T	G	bias_e_value=1.0187e-09	bias_p_value=4.68757e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=266.5	fisher_strand_p_value=1.17233e-17	frequency=2.857e-01	ks_quality_p_value=1	major_base=T	major_cov=8/62	major_frequency=7.143e-01	minor_base=G	minor_cov=28/0	new_cov=28/0	polymorphism_frequency=2.857e-01	polymorphism_score=20.8	prediction=polymorphism	ref_cov=8/62	total_cov=37/62
RA	105	.	1	959680	0	C	T	bias_e_value=0.00109419	bias_p_value=5.03493e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=130.2	fisher_strand_p_value=1.96262e-11	frequency=2.794e-01	ks_quality_p_value=1	major_base=C	major_cov=42/7	major_frequency=7.206e-01	minor_base=T	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=2.794e-01	polymorphism_score=17.6	prediction=polymorphism	ref_cov=42/7	total_cov=42/26
RA	106	.	1	1072116	0	C	A	bias_e_value=25.4025	bias_p_value=1.1689e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=225.8	fisher_strand_p_value=7.75668e-07	frequency=2.198e-01	ks_quality_p_value=1	major_base=C	major_cov=42/29	major_frequency=7.802e-01	minor_base=A	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.198e-01	polymorphism_score=11.6	prediction=polymorphism	ref_cov=42/29	total_cov=42/49
RA	107	.	1	1072144	0	G	A	bias_e_value=0.0581657	bias_p_value=2.6765e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=160.7	fisher_strand_p_value=1.29026e-09	frequency=2.791e-01	ks_quality_p_value=0.964632	major_base=G	major_cov=43/19	major_frequency=7.209e-01	minor_base=A	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=2.791e-01	polymorphism_score=16.2	prediction=polymorphism	ref_cov=43/19	total_cov=43/43
RA	108	.	1	1126193	0	G	A	bias_e_value=0.331183	bias_p_value=1.52394e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=111.9	fisher_strand_p_value=7.74509e-09	frequency=2.982e-01	ks_quality_p_value=1	major_base=G	major_cov=8/32	major_frequency=7.018e-01	minor_base=A	minor_cov=17/0	new_cov=17/0	polymorphism_frequency=2.982e-01	polymorphism_score=14.2	prediction=polymorphism	ref_cov=8/32	total_cov=25/32
RA	109	.	1	1134390	0	C	T	bias_e_value=0.0261744	bias_p_value=1.20442e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=217.9	fisher_strand_p_value=5.39104e-10	frequency=2.069e-01	ks_quality_p_value=1	major_base=C	major_cov=15/54	major_frequency=7.931e-01	minor_base=T	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.069e-01	polymorphism_score=10.2	prediction=polymorphism	ref_cov=15/54	total_cov=33/54
RA	110	.	1	1190350	0	G	A	bias_e_value=1474.94	bias_p_value=0.000678695	consensus_reject=FREQUENCY_CUTOFF	consensus_score=138.8	fisher_strand_p_value=6.36554e-05	frequency=2.419e-01	ks_quality_p_value=1	major_base=G	major_cov=26/21	major_frequency=7.581e-01	minor_base=A	minor_cov=0/15	new_cov=0/15	polymorphism_frequency=2.419e-01	polymorphism_score=10.3	prediction=polymorphism	ref_cov=26/21	total_cov=26/36
RA	111	.	1	1190392	0	C	A	bias_e_value=32.9505	bias_p_value=1.51622e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=104.5	fisher_strand_p_value=1.02512e-06	frequency=3.137e-01	ks_quality_p_value=1	major_base=C	major_cov=25/10	major_frequency=6.863e-01	minor_base=A	minor_cov=0/16	new_cov=0/16	polymorphism_frequency=3.137e-01	polymorphism_score=10.8	prediction=polymorphism	ref_cov=25/10	total_cov=25/26
RA	112	.	1	1245052	0	A	C	bias_e_value=1.54322e-05	bias_p_value=7.10111e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=197.8	fisher_strand_p_value=2.36118e-13	frequency=3.253e-01	ks_quality_p_value=1	major_base=A	major_cov=45/11	major_frequency=6.747e-01	minor_base=C	minor_cov=0/27	new_cov=0/27	polymorphism_frequency=3.253e-01	polymorphism_score=10.6	prediction=polymorphism	ref_cov=45/11	total_cov=45/38
RA	113	.	1	1288009	0	T	G	bias_e_value=0.450248	bias_p_value=2.07182e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=172.2	fisher_strand_p_value=1.07057e-08	frequency=2.381e-01	ks_quality_p_value=1	major_base=T	major_cov=9/39	major_frequency=7.619e-01	minor_base=G	minor_cov=15/0	new_cov=15/0	polymorphism_frequency=2.381e-01	polymorphism_score=10.5	prediction=polymorphism	ref_cov=9/39	total_cov=24/39
RA	114	.	1	1302799	0	C	T	bias_e_value=0.0425532	bias_p_value=1.95809e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=144.3	fisher_strand_p_value=8.96886e-10	frequency=2.581e-01	ks_quality_p_value=1	major_base=C	major_cov=39/7	major_frequency=7.419e-01	minor_base=T	minor_cov=0/16	new_cov=0/16	polymorphism_frequency=2.581e-01	polymorphism_score=11.7	prediction=polymorphism	ref_cov=39/7	total_cov=39/23
RA	115	.	1	1320890	0	A	T	bias_e_value=9.94559	bias_p_value=4.57647e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=110.3	fisher_strand_p_value=2.84754e-07	frequency=3.137e-01	ks_quality_p_value=1	major_base=A	major_cov=26/9	major_frequency=6.863e-01	minor_base=T	minor_cov=0/16	new_cov=0/16	polymorphism_frequency=3.137e-01	polymorphism_score=11.9	prediction=polymorphism	ref_cov=26/9	total_cov=26/25
RA	116	.	1	1343487	0	C	T	bias_e_value=6.58241	bias_p_value=3.0289e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=162.8	fisher_strand_p_value=1.83443e-07	frequency=2.771e-01	ks_quality_p_value=1	major_base=C	major_cov=25/35	major_frequency=7.229e-01	minor_base=T	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.771e-01	polymorphism_score=14.8	prediction=polymorphism	ref_cov=25/35	total_cov=48/35
RA	117	.	1	1348347	0	A	G	bias_e_value=0.0153369	bias_p_value=7.05727e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=226.5	fisher_strand_p_value=3.08173e-10	frequency=2.376e-01	ks_quality_p_value=1	major_base=A	major_cov=24/53	major_frequency=7.624e-01	minor_base=G	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.376e-01	polymorphism_score=19.4	prediction=polymorphism	ref_cov=24/53	total_cov=51/53
RA	118	.	1	1376295	0	C	T	bias_e_value=0.114313	bias_p_value=5.26014e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=199.2	fisher_strand_p_value=2.52949e-09	frequency=2.184e-01	ks_quality_p_value=1	major_base=C	major_cov=50/18	major_frequency=7.816e-01	minor_base=T	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=2.184e-01	polymorphism_score=14.9	prediction=polymorphism	ref_cov=50/18	total_cov=50/37
RA	119	.	1	1376298	0	C	T	bias_e_value=0.387183	bias_p_value=1.78163e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=211.9	fisher_strand_p_value=9.18605e-09	frequency=2.069e-01	ks_quality_p_value=0.994021	major_base=C	major_cov=50/19	major_frequency=7.931e-01	minor_base=T	minor_cov=0/18	new_cov=0/18	polymorphism_frequency=2.069e-01	polymorphism_score=14.0	prediction=polymorphism	ref_cov=50/19	total_cov=50/37
RA	120	.	1	1393138	0	G	T	bias_e_value=16.7346	bias_p_value=7.70043e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=95.2	fisher_strand_p_value=4.96286e-07	frequency=3.469e-01	ks_quality_p_value=1	major_base=G	major_cov=9/23	major_frequency=6.531e-01	minor_base=T	minor_cov=17/0	new_cov=17/0	polymorphism_frequency=3.469e-01	polymorphism_score=10.8	prediction=polymorphism	ref_cov=9/23	total_cov=26/23
RA	121	.	1	1399040	0	C	A	bias_e_value=2.76361e-06	bias_p_value=1.27168e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=166.5	fisher_strand_p_value=3.99248e-14	frequency=3.067e-01	ks_quality_p_value=1	major_base=C	major_cov=46/6	major_frequency=6.933e-01	minor_base=A	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=3.067e-01	polymorphism_score=14.9	prediction=polymorphism	ref_cov=46/6	total_cov=46/29
RA	122	.	1	1449734	0	G	T	bias_e_value=23.2	bias_p_value=1.06755e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=174.8	fisher_strand_p_value=7.03878e-07	frequency=2.500e-01	ks_quality_p_value=1	major_base=G	major_cov=13/32	major_frequency=7.500e-01	minor_base=T	minor_cov=15/0	new_cov=15/0	polymorphism_frequency=2.500e-01	polymorphism_score=13.0	prediction=polymorphism	ref_cov=13/32	total_cov=31/32
RA	123	.	1	1451124	0	C	A	bias_e_value=0.00471423	bias_p_value=2.16926e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=93.2	fisher_strand_p_value=8.98896e-11	frequency=3.111e-01	ks_quality_p_value=1	major_base=C	major_cov=30/1	major_frequency=6.889e-01	minor_base=A	minor_cov=0/14	new_cov=0/14	polymorphism_frequency=3.111e-01	polymorphism_score=18.0	prediction=polymorphism	ref_cov=30/1	total_cov=30/15
RA	124	.	1	1532631	0	A	C	bias_e_value=2.5536e-09	bias_p_value=1.17504e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=165.9	fisher_strand_p_value=3.00968e-17	frequency=4.186e-01	ks_quality_p_value=1	major_base=A	major_cov=43/7	major_frequency=5.814e-01	minor_base=C	minor_cov=0/36	new_cov=0/36	polymorphism_frequency=4.186e-01	polymorphism_score=15.8	prediction=polymorphism	ref_cov=43/7	total_cov=43/43
RA	125	.	1	1536242	0	G	T	bias_e_value=5.0731e-06	bias_p_value=2.33439e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=214.6	fisher_strand_p_value=7.47615e-14	frequency=3.021e-01	ks_quality_p_value=1	major_base=G	major_cov=15/52	major_frequency=6.979e-01	minor_base=T	minor_cov=29/0	new_cov=29/0	polymorphism_frequency=3.021e-01	polymorphism_score=21.5	prediction=polymorphism	ref_cov=15/52	total_cov=44/52
RA	126	.	1	1536262	0	G	C	bias_e_value=0.0025621	bias_p_value=1.17895e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=263.5	fisher_strand_p_value=4.75995e-11	frequency=2.621e-01	ks_quality_p_value=1	major_base=G	major_cov=24/52	major_frequency=7.379e-01	minor_base=C	minor_cov=27/0	new_cov=27/0	polymorphism_frequency=2.621e-01	polymorphism_score=26.4	prediction=polymorphism	ref_cov=24/52	total_cov=51/52
RA	127	.	1	1557209	0	A	C	bias_e_value=0.760762	bias_p_value=3.50065e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=171.5	fisher_strand_p_value=1.86215e-08	frequency=3.187e-01	ks_quality_p_value=1	major_base=A	major_cov=35/27	major_frequency=6.813e-01	minor_base=C	minor_cov=0/29	new_cov=0/29	polymorphism_frequency=3.187e-01	polymorphism_score=18.9	prediction=polymorphism	ref_cov=35/27	total_cov=35/56
RA	128	.	1	1569203	0	T	A	bias_e_value=5.38219e-06	bias_p_value=2.47662e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=206.5	fisher_strand_p_value=7.9472e-14	frequency=2.785e-01	ks_quality_p_value=1	major_base=T	major_cov=50/7	major_frequency=7.215e-01	minor_base=A	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.785e-01	polymorphism_score=14.6	prediction=polymorphism	ref_cov=50/7	total_cov=50/29
RA	129	.	1	1569213	0	G	A	bias_e_value=1.94906e-06	bias_p_value=8.96863e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=151.9	fisher_strand_p_value=2.78423e-14	frequency=3.026e-01	ks_quality_p_value=1	major_base=G	major_cov=47/6	major_frequency=6.974e-01	minor_base=A	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=3.026e-01	polymorphism_score=19.9	prediction=polymorphism	ref_cov=47/6	total_cov=47/29
RA	130	.	1	1569217	0	T	A	bias_e_value=0.000527399	bias_p_value=2.42683e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=195.6	fisher_strand_p_value=9.18796e-12	frequency=2.632e-01	ks_quality_p_value=1	major_base=T	major_cov=47/9	major_frequency=7.368e-01	minor_base=A	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.632e-01	polymorphism_score=14.7	prediction=polymorphism	ref_cov=47/9	total_cov=47/29
RA	131	.	1	1587692	0	G	T	bias_e_value=0.818746	bias_p_value=3.76746e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=154.4	fisher_strand_p_value=2.03239e-08	frequency=2.571e-01	ks_quality_p_value=0.990159	major_base=G	major_cov=14/38	major_frequency=7.429e-01	minor_base=T	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.571e-01	polymorphism_score=14.4	prediction=polymorphism	ref_cov=14/38	total_cov=32/38
RA	132	.	1	1587704	0	G	A	bias_e_value=0.077582	bias_p_value=3.56994e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=143.8	fisher_strand_p_value=1.81363e-09	frequency=2.933e-01	ks_quality_p_value=0.928388	major_base=G	major_cov=15/38	major_frequency=7.067e-01	minor_base=A	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.933e-01	polymorphism_score=23.7	prediction=polymorphism	ref_cov=15/38	total_cov=37/38
RA	133	.	1	1587719	0	G	C	bias_e_value=126.309	bias_p_value=5.81213e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=207.0	fisher_strand_p_value=4.38537e-06	frequency=2.078e-01	ks_quality_p_value=0.99321	major_base=G	major_cov=23/38	major_frequency=7.922e-01	minor_base=C	minor_cov=16/0	new_cov=16/0	polymorphism_frequency=2.078e-01	polymorphism_score=15.7	prediction=polymorphism	ref_cov=23/38	total_cov=39/38
RA	134	.	1	1639907	0	T	C	bias_e_value=0.210969	bias_p_value=9.70774e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=108.0	fisher_strand_p_value=4.8175e-09	frequency=3.387e-01	ks_quality_p_value=1	major_base=T	major_cov=31/10	major_frequency=6.613e-01	minor_base=C	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=3.387e-01	polymorphism_score=16.8	prediction=polymorphism	ref_cov=31/10	total_cov=31/31
RA	135	.	1	1665635	0	C	A	bias_e_value=5.85395	bias_p_value=2.6937e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=137.0	fisher_strand_p_value=1.61918e-07	frequency=2.742e-01	ks_quality_p_value=1	major_base=C	major_cov=32/13	major_frequency=7.258e-01	minor_base=A	minor_cov=0/17	new_cov=0/17	polymorphism_frequency=2.742e-01	polymorphism_score=12.5	prediction=polymorphism	ref_cov=32/13	total_cov=32/30
RA	136	.	1	1665648	0	A	C	bias_e_value=0.00145853	bias_p_value=6.71141e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=138.3	fisher_strand_p_value=2.64698e-11	frequency=3.788e-01	ks_quality_p_value=1	major_base=A	major_cov=33/8	major_frequency=6.212e-01	minor_base=C	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=3.788e-01	polymorphism_score=14.3	prediction=polymorphism	ref_cov=33/8	total_cov=33/33
RA	137	.	1	1665707	0	C	T	bias_e_value=6.04786e-07	bias_p_value=2.78293e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=97.1	fisher_strand_p_value=8.48746e-15	frequency=4.000e-01	ks_quality_p_value=0.981133	major_base=C	major_cov=37/5	major_frequency=6.000e-01	minor_base=T	minor_cov=0/28	new_cov=0/28	polymorphism_frequency=4.000e-01	polymorphism_score=34.5	prediction=polymorphism	ref_cov=37/5	total_cov=37/35
RA	138	.	1	1711979	0	G	T	bias_e_value=0.0465868	bias_p_value=2.14369e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=154.3	fisher_strand_p_value=9.86188e-10	frequency=3.544e-01	ks_quality_p_value=1	major_base=G	major_cov=17/34	major_frequency=6.456e-01	minor_base=T	minor_cov=28/0	new_cov=28/0	polymorphism_frequency=3.544e-01	polymorphism_score=16.4	prediction=polymorphism	ref_cov=17/34	total_cov=45/34
RA	139	.	1	1711992	0	C	T	bias_e_value=0.0364883	bias_p_value=1.67901e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=158.2	fisher_strand_p_value=7.63423e-10	frequency=3.529e-01	ks_quality_p_value=1	major_base=C	major_cov=20/35	major_frequency=6.471e-01	minor_base=T	minor_cov=30/0	new_cov=30/0	polymorphism_frequency=3.529e-01	polymorphism_score=23.3	prediction=polymorphism	ref_cov=20/35	total_cov=50/35
RA	140	.	1	1712032	0	G	T	bias_e_value=766.085	bias_p_value=0.000352515	consensus_reject=FREQUENCY_CUTOFF	consensus_score=180.4	fisher_strand_p_value=3.09699e-05	frequency=2.857e-01	ks_quality_p_value=1	major_base=G	major_cov=30/25	major_frequency=7.143e-01	minor_base=T	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.857e-01	polymorphism_score=14.6	prediction=polymorphism	ref_cov=30/25	total_cov=52/25
RA	141	.	1	1712051	0	A	T	bias_e_value=1516.4	bias_p_value=0.000697773	consensus_reject=FREQUENCY_CUTOFF	consensus_score=196.6	fisher_strand_p_value=6.5633e-05	frequency=2.500e-01	ks_quality_p_value=1	major_base=A	major_cov=32/28	major_frequency=7.500e-01	minor_base=T	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.500e-01	polymorphism_score=12.2	prediction=polymorphism	ref_cov=32/28	total_cov=52/28
RA	142	.	1	1712070	0	A	T	bias_e_value=168.528	bias_p_value=7.75481e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=210.3	fisher_strand_p_value=5.95058e-06	frequency=2.791e-01	ks_quality_p_value=1	major_base=A	major_cov=32/30	major_frequency=7.209e-01	minor_base=T	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.791e-01	polymorphism_score=16.5	prediction=polymorphism	ref_cov=32/30	total_cov=56/30
RA	143	.	1	1728907	0	T	A	bias_e_value=265.738	bias_p_value=0.00012228	consensus_reject=FREQUENCY_CUTOFF	consensus_score=179.1	fisher_strand_p_value=9.75275e-06	frequency=2.394e-01	ks_quality_p_value=1	major_base=T	major_cov=31/23	major_frequency=7.606e-01	minor_base=A	minor_cov=0/17	new_cov=0/17	polymorphism_frequency=2.394e-01	polymorphism_score=10.8	prediction=polymorphism	ref_cov=31/23	total_cov=31/41
RA	144	.	1	1728924	0	C	T	bias_e_value=260.015	bias_p_value=0.000119646	consensus_reject=FREQUENCY_CUTOFF	consensus_score=136.6	fisher_strand_p_value=9.52473e-06	frequency=2.464e-01	ks_quality_p_value=1	major_base=C	major_cov=30/22	major_frequency=7.536e-01	minor_base=T	minor_cov=0/17	new_cov=0/17	polymorphism_frequency=2.464e-01	polymorphism_score=16.1	prediction=polymorphism	ref_cov=30/22	total_cov=30/40
RA	145	.	1	1728961	0	A	C	bias_e_value=2.40951e-05	bias_p_value=1.10874e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=150.3	fisher_strand_p_value=3.74403e-13	frequency=4.026e-01	ks_quality_p_value=1	major_base=A	major_cov=36/10	major_frequency=5.974e-01	minor_base=C	minor_cov=0/31	new_cov=0/31	polymorphism_frequency=4.026e-01	polymorphism_score=14.9	prediction=polymorphism	ref_cov=36/10	total_cov=36/41
RA	146	.	1	1742715	0	G	A	bias_e_value=0.113145	bias_p_value=5.20637e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=152.1	fisher_strand_p_value=2.50234e-09	frequency=2.537e-01	ks_quality_p_value=1	major_base=G	major_cov=40/10	major_frequency=7.463e-01	minor_base=A	minor_cov=0/17	new_cov=0/17	polymorphism_frequency=2.537e-01	polymorphism_score=10.8	prediction=polymorphism	ref_cov=40/10	total_cov=40/27
RA	147	.	1	1742761	0	C	T	bias_e_value=0.107199	bias_p_value=4.93276e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=153.2	fisher_strand_p_value=2.36439e-09	frequency=2.308e-01	ks_quality_p_value=1	major_base=C	major_cov=42/8	major_frequency=7.692e-01	minor_base=T	minor_cov=0/15	new_cov=0/15	polymorphism_frequency=2.308e-01	polymorphism_score=11.2	prediction=polymorphism	ref_cov=42/8	total_cov=42/24
RA	148	.	1	1754370	0	A	T	bias_e_value=0.0109246	bias_p_value=5.02698e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=190.9	fisher_strand_p_value=2.16168e-10	frequency=2.532e-01	ks_quality_p_value=1	major_base=A	major_cov=13/46	major_frequency=7.468e-01	minor_base=T	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.532e-01	polymorphism_score=13.1	prediction=polymorphism	ref_cov=13/46	total_cov=33/46
RA	149	.	1	1763543	0	C	T	bias_e_value=0.0716545	bias_p_value=3.29719e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=115.1	fisher_strand_p_value=1.54902e-09	frequency=3.158e-01	ks_quality_p_value=1	major_base=C	major_cov=32/7	major_frequency=6.842e-01	minor_base=T	minor_cov=0/18	new_cov=0/18	polymorphism_frequency=3.158e-01	polymorphism_score=14.2	prediction=polymorphism	ref_cov=32/7	total_cov=32/26
RA	150	.	1	1763573	0	A	C	bias_e_value=8.33436e-07	bias_p_value=3.83506e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=114.6	fisher_strand_p_value=1.15903e-14	frequency=4.237e-01	ks_quality_p_value=1	major_base=A	major_cov=32/2	major_frequency=5.763e-01	minor_base=C	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=4.237e-01	polymorphism_score=10.6	prediction=polymorphism	ref_cov=32/2	total_cov=32/27
RA	151	.	1	1768250	0	G	A	bias_e_value=7.58139e-08	bias_p_value=3.48858e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=142.8	fisher_strand_p_value=9.811e-16	frequency=3.239e-01	ks_quality_p_value=1	major_base=G	major_cov=3/45	major_frequency=6.761e-01	minor_base=A	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=3.239e-01	polymorphism_score=23.8	prediction=polymorphism	ref_cov=3/45	total_cov=26/45
RA	152	.	1	1784064	0	G	T	bias_e_value=754.917	bias_p_value=0.000347375	consensus_reject=FREQUENCY_CUTOFF	consensus_score=140.6	fisher_strand_p_value=3.04753e-05	frequency=2.727e-01	ks_quality_p_value=1	major_base=G	major_cov=16/24	major_frequency=7.273e-01	minor_base=T	minor_cov=15/0	new_cov=15/0	polymorphism_frequency=2.727e-01	polymorphism_score=11.5	prediction=polymorphism	ref_cov=16/24	total_cov=31/24
RA	153	.	1	1870517	0	C	T	bias_e_value=0.0107166	bias_p_value=4.93123e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=218.4	fisher_strand_p_value=2.11867e-10	frequency=2.527e-01	ks_quality_p_value=1	major_base=C	major_cov=49/19	major_frequency=7.473e-01	minor_base=T	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=2.527e-01	polymorphism_score=20.6	prediction=polymorphism	ref_cov=49/19	total_cov=49/43
RA	154	.	1	1870520	0	G	A	bias_e_value=0.000162747	bias_p_value=7.48879e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=208.5	fisher_strand_p_value=2.70998e-12	frequency=2.967e-01	ks_quality_p_value=1	major_base=G	major_cov=48/16	major_frequency=7.033e-01	minor_base=A	minor_cov=0/27	new_cov=0/27	polymorphism_frequency=2.967e-01	polymorphism_score=18.1	prediction=polymorphism	ref_cov=48/16	total_cov=48/43
RA	155	.	1	1870524	0	T	A	bias_e_value=0.236925	bias_p_value=1.09021e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=246.4	fisher_strand_p_value=5.44318e-09	frequency=2.258e-01	ks_quality_p_value=1	major_base=T	major_cov=49/23	major_frequency=7.742e-01	minor_base=A	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=2.258e-01	polymorphism_score=10.8	prediction=polymorphism	ref_cov=49/23	total_cov=49/44
RA	156	.	1	1870546	0	G	A	bias_e_value=1.27657e-09	bias_p_value=5.87413e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=164.4	fisher_strand_p_value=1.47764e-17	frequency=3.483e-01	ks_quality_p_value=1	major_base=G	major_cov=51/7	major_frequency=6.517e-01	minor_base=A	minor_cov=0/31	new_cov=0/31	polymorphism_frequency=3.483e-01	polymorphism_score=23.9	prediction=polymorphism	ref_cov=51/7	total_cov=51/38
RA	157	.	1	1870555	0	C	T	bias_e_value=0.000562162	bias_p_value=2.58679e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=211.7	fisher_strand_p_value=9.81825e-12	frequency=2.556e-01	ks_quality_p_value=1	major_base=C	major_cov=52/15	major_frequency=7.444e-01	minor_base=T	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=2.556e-01	polymorphism_score=17.4	prediction=polymorphism	ref_cov=52/15	total_cov=52/40
RA	158	.	1	1877075	0	C	T	bias_e_value=8.62664e-06	bias_p_value=3.96955e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=146.0	fisher_strand_p_value=1.29403e-13	frequency=2.941e-01	ks_quality_p_value=1	major_base=C	major_cov=4/44	major_frequency=7.059e-01	minor_base=T	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.941e-01	polymorphism_score=13.3	prediction=polymorphism	ref_cov=4/44	total_cov=24/44
RA	159	.	1	1877080	0	C	T	bias_e_value=0.000603397	bias_p_value=2.77653e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=158.2	fisher_strand_p_value=1.05679e-11	frequency=2.647e-01	ks_quality_p_value=1	major_base=C	major_cov=6/44	major_frequency=7.353e-01	minor_base=T	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.647e-01	polymorphism_score=11.2	prediction=polymorphism	ref_cov=6/44	total_cov=24/44
RA	160	.	1	1877113	0	T	A	bias_e_value=0.00662987	bias_p_value=3.05074e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=157.6	fisher_strand_p_value=1.28309e-10	frequency=2.879e-01	ks_quality_p_value=1	major_base=T	major_cov=8/39	major_frequency=7.121e-01	minor_base=A	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.879e-01	polymorphism_score=13.5	prediction=polymorphism	ref_cov=8/39	total_cov=27/39
RA	161	.	1	1877161	0	G	A	bias_e_value=2182.38	bias_p_value=0.00100422	consensus_reject=FREQUENCY_CUTOFF	consensus_score=170.8	fisher_strand_p_value=9.81765e-05	frequency=2.222e-01	ks_quality_p_value=1	major_base=G	major_cov=21/28	major_frequency=7.778e-01	minor_base=A	minor_cov=14/0	new_cov=14/0	polymorphism_frequency=2.222e-01	polymorphism_score=10.8	prediction=polymorphism	ref_cov=21/28	total_cov=35/28
RA	162	.	1	1882474	0	A	C	bias_e_value=0.000449235	bias_p_value=2.06716e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=166.4	fisher_strand_p_value=7.77716e-12	frequency=3.333e-01	ks_quality_p_value=1	major_base=A	major_cov=40/12	major_frequency=6.667e-01	minor_base=C	minor_cov=0/26	new_cov=0/26	polymorphism_frequency=3.333e-01	polymorphism_score=11.2	prediction=polymorphism	ref_cov=40/12	total_cov=40/38
RA	163	.	1	1946410	0	A	C	bias_e_value=0.0998299	bias_p_value=4.59368e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=186.2	fisher_strand_p_value=2.19399e-09	frequency=2.667e-01	ks_quality_p_value=1	major_base=A	major_cov=22/44	major_frequency=7.333e-01	minor_base=C	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.667e-01	polymorphism_score=14.5	prediction=polymorphism	ref_cov=22/44	total_cov=46/44
RA	164	.	1	1948764	0	T	G	bias_e_value=0.301658	bias_p_value=1.38808e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=243.1	fisher_strand_p_value=7.01954e-09	frequency=2.772e-01	ks_quality_p_value=1	major_base=T	major_cov=30/43	major_frequency=7.228e-01	minor_base=G	minor_cov=28/0	new_cov=28/0	polymorphism_frequency=2.772e-01	polymorphism_score=13.0	prediction=polymorphism	ref_cov=30/43	total_cov=60/43
RA	165	.	1	1948801	0	G	T	bias_e_value=16.2405	bias_p_value=7.4731e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=314.1	fisher_strand_p_value=4.80642e-07	frequency=2.243e-01	ks_quality_p_value=1	major_base=G	major_cov=39/44	major_frequency=7.757e-01	minor_base=T	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.243e-01	polymorphism_score=12.6	prediction=polymorphism	ref_cov=39/44	total_cov=65/44
RA	166	.	1	1948842	0	C	T	bias_e_value=1.94355	bias_p_value=8.94327e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=321.4	fisher_strand_p_value=5.0224e-08	frequency=2.124e-01	ks_quality_p_value=1	major_base=C	major_cov=38/51	major_frequency=7.876e-01	minor_base=T	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.124e-01	polymorphism_score=14.3	prediction=polymorphism	ref_cov=38/51	total_cov=63/51
RA	167	.	1	1973297	0	C	T	bias_e_value=8.54831	bias_p_value=3.93351e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=86.6	fisher_strand_p_value=2.42315e-07	frequency=3.803e-01	ks_quality_p_value=1	major_base=C	major_cov=19/25	major_frequency=6.197e-01	minor_base=T	minor_cov=27/0	new_cov=27/0	polymorphism_frequency=3.803e-01	polymorphism_score=26.6	prediction=polymorphism	ref_cov=19/25	total_cov=46/25
RA	168	.	1	1996006	0	A	C	bias_e_value=0.00162178	bias_p_value=7.46261e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=258.5	fisher_strand_p_value=2.95613e-11	frequency=3.000e-01	ks_quality_p_value=1	major_base=A	major_cov=47/23	major_frequency=7.000e-01	minor_base=C	minor_cov=0/30	new_cov=0/30	polymorphism_frequency=3.000e-01	polymorphism_score=10.4	prediction=polymorphism	ref_cov=47/23	total_cov=47/53
RA	169	.	1	1996013	0	T	C	bias_e_value=13.1823	bias_p_value=6.06585e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=253.3	fisher_strand_p_value=3.8462e-07	frequency=2.041e-01	ks_quality_p_value=1	major_base=T	major_cov=46/32	major_frequency=7.959e-01	minor_base=C	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.041e-01	polymorphism_score=10.8	prediction=polymorphism	ref_cov=46/32	total_cov=46/52
RA	170	.	1	1999236	0	G	A	bias_e_value=0.244329	bias_p_value=1.12428e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=134.2	fisher_strand_p_value=5.62239e-09	frequency=3.288e-01	ks_quality_p_value=1	major_base=G	major_cov=33/16	major_frequency=6.712e-01	minor_base=A	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=3.288e-01	polymorphism_score=19.7	prediction=polymorphism	ref_cov=33/16	total_cov=33/41
RA	171	.	1	1999246	0	C	G	bias_e_value=321.659	bias_p_value=0.000148012	consensus_reject=FREQUENCY_CUTOFF	consensus_score=166.6	fisher_strand_p_value=1.21074e-05	frequency=2.361e-01	ks_quality_p_value=0.991451	major_base=C	major_cov=31/24	major_frequency=7.639e-01	minor_base=G	minor_cov=0/17	new_cov=0/17	polymorphism_frequency=2.361e-01	polymorphism_score=11.7	prediction=polymorphism	ref_cov=31/24	total_cov=31/41
RA	172	.	1	1999251	0	G	A	bias_e_value=4.30166e-06	bias_p_value=1.97941e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=75.4	fisher_strand_p_value=6.46355e-14	frequency=4.722e-01	ks_quality_p_value=0.975453	major_base=G	major_cov=31/7	major_frequency=5.278e-01	minor_base=A	minor_cov=0/34	new_cov=0/34	polymorphism_frequency=4.722e-01	polymorphism_score=32.1	prediction=polymorphism	ref_cov=31/7	total_cov=31/41
RA	173	.	1	2003409	0	T	A	bias_e_value=3.27236e-10	bias_p_value=1.50578e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=136.7	fisher_strand_p_value=3.6593e-18	frequency=3.875e-01	ks_quality_p_value=1	major_base=T	major_cov=4/45	major_frequency=6.125e-01	minor_base=A	minor_cov=31/0	new_cov=31/0	polymorphism_frequency=3.875e-01	polymorphism_score=38.0	prediction=polymorphism	ref_cov=4/45	total_cov=35/45
RA	174	.	1	2004169	0	T	G	bias_e_value=3.4298e-10	bias_p_value=1.57823e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=150.2	fisher_strand_p_value=3.83986e-18	frequency=4.286e-01	ks_quality_p_value=1	major_base=T	major_cov=8/44	major_frequency=5.714e-01	minor_base=G	minor_cov=39/0	new_cov=39/0	polymorphism_frequency=4.286e-01	polymorphism_score=32.6	prediction=polymorphism	ref_cov=8/44	total_cov=47/44
RA	175	.	1	2004178	0	A	G	bias_e_value=0.0060529	bias_p_value=2.78525e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=172.7	fisher_strand_p_value=1.16676e-10	frequency=3.059e-01	ks_quality_p_value=1	major_base=A	major_cov=17/42	major_frequency=6.941e-01	minor_base=G	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=3.059e-01	polymorphism_score=16.5	prediction=polymorphism	ref_cov=17/42	total_cov=43/42
RA	176	.	1	2004206	0	A	T	bias_e_value=0.00461837	bias_p_value=2.12514e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=213.1	fisher_strand_p_value=8.79836e-11	frequency=2.747e-01	ks_quality_p_value=1	major_base=A	major_cov=19/47	major_frequency=7.253e-01	minor_base=T	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.747e-01	polymorphism_score=19.9	prediction=polymorphism	ref_cov=19/47	total_cov=46/47
RA	177	.	1	2021854	0	T	A	bias_e_value=0.352133	bias_p_value=1.62034e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=97.1	fisher_strand_p_value=8.26218e-09	frequency=3.729e-01	ks_quality_p_value=1	major_base=T	major_cov=27/10	major_frequency=6.271e-01	minor_base=A	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=3.729e-01	polymorphism_score=21.0	prediction=polymorphism	ref_cov=27/10	total_cov=27/32
RA	178	.	1	2125650	0	G	T	bias_e_value=0.00308701	bias_p_value=1.42049e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=206.0	fisher_strand_p_value=5.99888e-11	frequency=2.967e-01	ks_quality_p_value=0.963591	major_base=G	major_cov=19/45	major_frequency=7.033e-01	minor_base=T	minor_cov=27/0	new_cov=27/0	polymorphism_frequency=2.967e-01	polymorphism_score=17.8	prediction=polymorphism	ref_cov=19/45	total_cov=46/45
RA	179	.	1	2125665	0	T	A	bias_e_value=0.00143941	bias_p_value=6.62345e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=188.8	fisher_strand_p_value=2.61087e-11	frequency=2.976e-01	ks_quality_p_value=1	major_base=T	major_cov=15/44	major_frequency=7.024e-01	minor_base=A	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.976e-01	polymorphism_score=13.4	prediction=polymorphism	ref_cov=15/44	total_cov=40/44
RA	180	.	1	2125702	0	C	T	bias_e_value=0.847237	bias_p_value=3.89857e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=215.1	fisher_strand_p_value=2.08644e-08	frequency=2.262e-01	ks_quality_p_value=1	major_base=C	major_cov=20/45	major_frequency=7.738e-01	minor_base=T	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.262e-01	polymorphism_score=11.4	prediction=polymorphism	ref_cov=20/45	total_cov=39/45
RA	181	.	1	2138080	0	G	A	bias_e_value=5.38344	bias_p_value=2.47719e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=148.0	fisher_strand_p_value=1.4811e-07	frequency=2.429e-01	ks_quality_p_value=1	major_base=G	major_cov=37/16	major_frequency=7.571e-01	minor_base=A	minor_cov=0/17	new_cov=0/17	polymorphism_frequency=2.429e-01	polymorphism_score=11.6	prediction=polymorphism	ref_cov=37/16	total_cov=37/33
RA	182	.	1	2138090	0	C	A	bias_e_value=0.0040614	bias_p_value=1.86886e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=126.2	fisher_strand_p_value=7.69459e-11	frequency=3.333e-01	ks_quality_p_value=1	major_base=C	major_cov=36/10	major_frequency=6.667e-01	minor_base=A	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=3.333e-01	polymorphism_score=20.9	prediction=polymorphism	ref_cov=36/10	total_cov=36/33
RA	183	.	1	2138106	0	C	A	bias_e_value=0.138764	bias_p_value=6.38525e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=80.3	fisher_strand_p_value=3.1009e-09	frequency=4.310e-01	ks_quality_p_value=1	major_base=C	major_cov=24/9	major_frequency=5.690e-01	minor_base=A	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=4.310e-01	polymorphism_score=23.7	prediction=polymorphism	ref_cov=24/9	total_cov=24/34
RA	184	.	1	2140613	0	G	A	bias_e_value=0.11616	bias_p_value=5.34513e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=222.3	fisher_strand_p_value=2.57244e-09	frequency=2.188e-01	ks_quality_p_value=1	major_base=G	major_cov=23/52	major_frequency=7.812e-01	minor_base=A	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.188e-01	polymorphism_score=14.7	prediction=polymorphism	ref_cov=23/52	total_cov=44/52
RA	185	.	1	2159261	0	G	A	bias_e_value=0.0156401	bias_p_value=7.19678e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=182.8	fisher_strand_p_value=3.14546e-10	frequency=2.644e-01	ks_quality_p_value=1	major_base=G	major_cov=46/18	major_frequency=7.356e-01	minor_base=A	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=2.644e-01	polymorphism_score=20.2	prediction=polymorphism	ref_cov=46/18	total_cov=46/41
RA	186	.	1	2167566	0	C	T	bias_e_value=0.000631003	bias_p_value=2.90356e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=126.5	fisher_strand_p_value=1.1071e-11	frequency=3.288e-01	ks_quality_p_value=1	major_base=C	major_cov=10/39	major_frequency=6.712e-01	minor_base=T	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=3.288e-01	polymorphism_score=20.4	prediction=polymorphism	ref_cov=10/39	total_cov=34/39
RA	187	.	1	2167589	0	A	G	bias_e_value=0.0009143	bias_p_value=4.20716e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=149.7	fisher_strand_p_value=1.62809e-11	frequency=3.151e-01	ks_quality_p_value=1	major_base=A	major_cov=10/40	major_frequency=6.849e-01	minor_base=G	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=3.151e-01	polymorphism_score=16.8	prediction=polymorphism	ref_cov=10/40	total_cov=33/40
MC	188	.	1	1788135	1788402	0	0	left_inside_cov=24	left_outside_cov=25	right_inside_cov=23	right_outside_cov=25
JC	189	.	1	1	1	1	2173202	-1	0	alignment_overlap=0	circular_chromosome=1	coverage_minus=32	coverage_plus=57	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=227	key=1__1__1__1__2173202__-1__0____251__251__0__0	max_left=243	max_left_minus=235	max_left_plus=243	max_min_left=123	max_min_left_minus=119	max_min_left_plus=123	max_min_right=125	max_min_right_minus=122	max_min_right_plus=125	max_pos_hash_score=454	max_right=250	max_right_minus=250	max_right_plus=242	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=1.05	new_junction_read_count=90	polymorphism_frequency=1.000e+00	pos_hash_score=58	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=227	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=227	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=89
JC	190	.	1	264869	1	1	265008	1	0	alignment_overlap=17	coverage_minus=5	coverage_plus=0	flanking_left=251	flanking_right=251	frequency=NA	junction_possible_overlap_registers=210	key=1__264869__1__1__264991__1__17____251__251__1__1	max_left=103	max_left_minus=103	max_left_plus=0	max_min_left=103	max_min_left_minus=103	max_min_left_plus=0	max_min_right=19	max_min_right_minus=19	max_min_right_plus=0	max_pos_hash_score=420	max_right=185	max_right_minus=185	max_right_plus=0	neg_log10_pos_hash_p_value=7.5	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=NA	pos_hash_score=3	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=17	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=5
JC	191	.	1	266030	-1	1	266035	-1	0	alignment_overlap=7	coverage_minus=2	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=NA	junction_possible_overlap_registers=220	key=1__266030__-1__1__266042__-1__7____251__251__1__1	max_left=58	max_left_minus=58	max_left_plus=29	max_min_left=58	max_min_left_minus=58	max_min_left_plus=29	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=440	max_right=215	max_right_minus=186	max_right_plus=215	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=NA	pos_hash_score=4	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=7	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=4
JC	192	.	1	298411	1	1	298594	1	0	alignment_overlap=4	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=3.096e-02	junction_possible_overlap_registers=223	key=1__298411__1__1__298590__1__4____251__251__0__0	max_left=172	max_left_minus=141	max_left_plus=172	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=66	max_min_right_minus=66	max_min_right_plus=66	max_pos_hash_score=446	max_right=66	max_right_minus=66	max_right_plus=66	neg_log10_pos_hash_p_value=7.7	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.096e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.45	side_1_overlap=4	side_1_possible_overlap_registers=227	side_1_read_count=124	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.79	side_2_overlap=0	side_2_possible_overlap_registers=223	side_2_read_count=66	side_2_redundant=0	total_non_overlap_reads=3
JC	193	.	1	394429	-1	1	394451	-1	0	alignment_overlap=19	coverage_minus=4	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=4.947e-02	junction_possible_overlap_registers=208	key=1__394429__-1__1__394470__-1__19____251__251__0__0	max_left=101	max_left_minus=101	max_left_plus=3	max_min_left=101	max_min_left_minus=101	max_min_left_plus=3	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=416	max_right=212	max_right_minus=212	max_right_plus=142	neg_log10_pos_hash_p_value=6.4	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=4.947e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.24	side_1_overlap=19	side_1_possible_overlap_registers=227	side_1_read_count=106	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.21	side_2_overlap=0	side_2_possible_overlap_registers=208	side_2_read_count=95	side_2_redundant=0	total_non_overlap_reads=5
JC	194	.	1	457852	-1	1	457958	-1	0	alignment_overlap=9	coverage_minus=2	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=4.752e-02	junction_possible_overlap_registers=218	key=1__457852__-1__1__457967__-1__9____251__251__0__0	max_left=137	max_left_minus=137	max_left_plus=94	max_min_left=94	max_min_left_minus=92	max_min_left_plus=94	max_min_right=85	max_min_right_minus=85	max_min_right_plus=0	max_pos_hash_score=436	max_right=107	max_right_minus=107	max_right_plus=107	neg_log10_pos_hash_p_value=7.6	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=4.752e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.08	side_1_overlap=9	side_1_possible_overlap_registers=227	side_1_read_count=92	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.88	side_2_overlap=0	side_2_possible_overlap_registers=218	side_2_read_count=72	side_2_redundant=0	total_non_overlap_reads=4
JC	195	.	1	865705	-1	1	865951	-1	0	alignment_overlap=12	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=3.615e-02	junction_possible_overlap_registers=215	key=1__865705__-1__1__865963__-1__12____251__251__0__0	max_left=88	max_left_minus=88	max_left_plus=17	max_min_left=88	max_min_left_minus=88	max_min_left_plus=17	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=430	max_right=222	max_right_minus=179	max_right_plus=222	neg_log10_pos_hash_p_value=7.6	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.615e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.89	side_1_overlap=12	side_1_possible_overlap_registers=227	side_1_read_count=76	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.09	side_2_overlap=0	side_2_possible_overlap_registers=215	side_2_read_count=88	side_2_redundant=0	total_non_overlap_reads=3
JC	196	.	1	1124472	-1	1	1124995	-1	0	alignment_overlap=13	coverage_minus=3	coverage_plus=0	flanking_left=251	flanking_right=251	frequency=3.653e-02	junction_possible_overlap_registers=214	key=1__1124472__-1__1__1125008__-1__13____251__251__0__0	max_left=169	max_left_minus=169	max_left_plus=0	max_min_left=14	max_min_left_minus=14	max_min_left_plus=0	max_min_right=115	max_min_right_minus=115	max_min_right_plus=0	max_pos_hash_score=428	max_right=223	max_right_minus=223	max_right_plus=0	neg_log10_pos_hash_p_value=7.6	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.653e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.97	side_1_overlap=13	side_1_possible_overlap_registers=227	side_1_read_count=83	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.99	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=80	side_2_redundant=0	total_non_overlap_reads=3
JC	197	.	1	1301667	1	1	1301845	1	0	alignment_overlap=11	coverage_minus=3	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=4.968e-02	junction_possible_overlap_registers=216	key=1__1301667__1__1__1301834__1__11____251__251__0__0	max_left=137	max_left_minus=137	max_left_plus=61	max_min_left=89	max_min_left_minus=89	max_min_left_plus=61	max_min_right=104	max_min_right_minus=104	max_min_right_plus=0	max_pos_hash_score=432	max_right=179	max_right_minus=171	max_right_plus=179	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=4.968e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.96	side_1_overlap=11	side_1_possible_overlap_registers=227	side_1_read_count=82	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.92	side_2_overlap=0	side_2_possible_overlap_registers=216	side_2_read_count=75	side_2_redundant=0	total_non_overlap_reads=4
JC	198	.	1	1328715	-1	1	1328882	-1	0	alignment_overlap=8	coverage_minus=1	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=5.430e-02	junction_possible_overlap_registers=219	key=1__1328715__-1__1__1328890__-1__8____251__251__0__0	max_left=192	max_left_minus=192	max_left_plus=94	max_min_left=94	max_min_left_minus=0	max_min_left_plus=94	max_min_right=50	max_min_right_minus=50	max_min_right_plus=0	max_pos_hash_score=438	max_right=150	max_right_minus=50	max_right_plus=150	neg_log10_pos_hash_p_value=7.7	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=5.430e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.89	side_1_overlap=8	side_1_possible_overlap_registers=227	side_1_read_count=76	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.80	side_2_overlap=0	side_2_possible_overlap_registers=219	side_2_read_count=66	side_2_redundant=0	total_non_overlap_reads=4
JC	199	.	1	1337282	-1	1	1337283	1	-5	alignment_overlap=-5	coverage_minus=5	coverage_plus=9	flanking_left=251	flanking_right=251	frequency=4.708e-01	junction_possible_overlap_registers=222	key=1__1337282__-1__1__1337283__1__-5__CCTCA__251__251__0__0	max_left=206	max_left_minus=197	max_left_plus=206	max_min_left=113	max_min_left_minus=75	max_min_left_plus=113	max_min_right=58	max_min_right_minus=49	max_min_right_plus=58	max_pos_hash_score=358	max_right=242	max_right_minus=230	max_right_plus=242	neg_log10_pos_hash_p_value=3.1	new_junction_coverage=0.32	new_junction_read_count=27	polymorphism_frequency=4.708e-01	pos_hash_score=14	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=43	side_1_coverage=0.37	side_1_overlap=0	side_1_possible_overlap_registers=184	side_1_read_count=26	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.35	side_2_overlap=0	side_2_possible_overlap_registers=227	side_2_read_count=30	side_2_redundant=0	total_non_overlap_reads=14	unique_read_sequence=CCTCA
JC	200	.	1	1667525	-1	1	1668458	-1	0	alignment_overlap=6	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.396e-02	junction_possible_overlap_registers=221	key=1__1667525__-1__1__1668464__-1__6____251__251__0__0	max_left=132	max_left_minus=84	max_left_plus=132	max_min_left=114	max_min_left_minus=84	max_min_left_plus=114	max_min_right=81	max_min_right_minus=0	max_min_right_plus=81	max_pos_hash_score=442	max_right=143	max_right_minus=143	max_right_plus=131	neg_log10_pos_hash_p_value=7.7	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.396e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.02	side_1_overlap=6	side_1_possible_overlap_registers=227	side_1_read_count=87	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.03	side_2_overlap=0	side_2_possible_overlap_registers=221	side_2_read_count=86	side_2_redundant=0	total_non_overlap_reads=3
JC	201	.	1	1688138	-1	1	1688197	-1	0	alignment_overlap=11	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.964e-02	junction_possible_overlap_registers=216	key=1__1688138__-1__1__1688208__-1__11____251__251__0__0	max_left=193	max_left_minus=193	max_left_plus=181	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=60	max_min_right_minus=33	max_min_right_plus=60	max_pos_hash_score=432	max_right=60	max_right_minus=33	max_right_plus=60	neg_log10_pos_hash_p_value=7.6	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.964e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.88	side_1_overlap=11	side_1_possible_overlap_registers=227	side_1_read_count=75	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.91	side_2_overlap=0	side_2_possible_overlap_registers=216	side_2_read_count=74	side_2_redundant=0	total_non_overlap_reads=3
JC	202	.	1	1695603	-1	1	1695890	-1	0	alignment_overlap=9	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=4.586e-02	junction_possible_overlap_registers=218	key=1__1695603__-1__1__1695899__-1__9____251__251__0__0	max_left=148	max_left_minus=118	max_left_plus=148	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=94	max_min_right_minus=94	max_min_right_plus=94	max_pos_hash_score=436	max_right=94	max_right_minus=94	max_right_plus=94	neg_log10_pos_hash_p_value=7.6	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=4.586e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.64	side_1_overlap=9	side_1_possible_overlap_registers=227	side_1_read_count=55	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.88	side_2_overlap=0	side_2_possible_overlap_registers=218	side_2_read_count=72	side_2_redundant=0	total_non_overlap_reads=3
JC	203	.	1	1762908	-1	1	1762965	-1	0	alignment_overlap=10	coverage_minus=3	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=5.417e-02	junction_possible_overlap_registers=217	key=1__1762908__-1__1__1762975__-1__10____251__251__0__0	max_left=97	max_left_minus=97	max_left_plus=5	max_min_left=63	max_min_left_minus=63	max_min_left_plus=5	max_min_right=57	max_min_right_minus=57	max_min_right_plus=0	max_pos_hash_score=434	max_right=228	max_right_minus=228	max_right_plus=206	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=5.417e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.88	side_1_overlap=10	side_1_possible_overlap_registers=227	side_1_read_count=75	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.83	side_2_overlap=0	side_2_possible_overlap_registers=217	side_2_read_count=68	side_2_redundant=0	total_non_overlap_reads=4
JC	204	.	1	1887260	-1	1	1887483	-1	0	alignment_overlap=6	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=5.583e-02	junction_possible_overlap_registers=221	key=1__1887260__-1__1__1887489__-1__6____251__251__0__0	max_left=125	max_left_minus=125	max_left_plus=125	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=120	max_min_right_minus=120	max_min_right_plus=110	max_pos_hash_score=442	max_right=120	max_right_minus=120	max_right_plus=110	neg_log10_pos_hash_p_value=7.7	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=5.583e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.68	side_1_overlap=6	side_1_possible_overlap_registers=227	side_1_read_count=58	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.54	side_2_overlap=0	side_2_possible_overlap_registers=221	side_2_read_count=45	side_2_redundant=0	total_non_overlap_reads=3
JC	205	.	1	1918072	1	1	1918067	-1	0	alignment_overlap=108	coverage_minus=6	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=1.380e-01	junction_possible_overlap_registers=119	key=1__1918072__1__1__1918175__-1__108____251__251__0__0	max_left=121	max_left_minus=113	max_left_plus=121	max_min_left=22	max_min_left_minus=22	max_min_left_plus=20	max_min_right=58	max_min_right_minus=58	max_min_right_plus=22	max_pos_hash_score=238	max_right=130	max_right_minus=130	max_right_plus=122	neg_log10_pos_hash_p_value=3.4	new_junction_coverage=0.18	new_junction_read_count=8	polymorphism_frequency=1.380e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.94	side_1_overlap=108	side_1_possible_overlap_registers=227	side_1_read_count=80	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.29	side_2_overlap=0	side_2_possible_overlap_registers=119	side_2_read_count=58	side_2_redundant=0	total_non_overlap_reads=8
JC	206	.	1	2051137	1	1	2051408	1	0	alignment_overlap=19	coverage_minus=2	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=6.199e-02	junction_possible_overlap_registers=208	key=1__2051137__1__1__2051389__1__19____251__251__0__0	max_left=175	max_left_minus=70	max_left_plus=175	max_min_left=70	max_min_left_minus=70	max_min_left_plus=0	max_min_right=56	max_min_right_minus=0	max_min_right_plus=56	max_pos_hash_score=416	max_right=202	max_right_minus=202	max_right_plus=56	neg_log10_pos_hash_p_value=6.9	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=6.199e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.83	side_1_overlap=19	side_1_possible_overlap_registers=227	side_1_read_count=71	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.71	side_2_overlap=0	side_2_possible_overlap_registers=208	side_2_read_count=56	side_2_redundant=0	total_non_overlap_reads=4
UN	207	.	1	5371	6092
UN	208	.	1	231001	231152
UN	209	.	1	262915	262915
UN	210	.	1	262917	262917
UN	211	.	1	262923	266116
UN	212	.	1	266451	268333
UN	213	.	1	374268	375023
UN	214	.	1	375026	375028
UN	215	.	1	412477	414332
UN	216	.	1	414334	414339
UN	217	.	1	491449	492192
UN	218	.	1	492195	492205
UN	219	.	1	492207	492207
UN	220	.	1	492209	492213
UN	221	.	1	587106	587106
UN	222	.	1	587109	587661
UN	223	.	1	679699	679854
UN	224	.	1	696711	696711
UN	225	.	1	696713	696713
UN	226	.	1	696726	701857
UN	227	.	1	704248	704461
UN	228	.	1	713282	713954
UN	229	.	1	713956	713956
UN	230	.	1	820748	821499
UN	231	.	1	1044222	1044226
UN	232	.	1	1044232	1044232
UN	233	.	1	1044235	1044235
UN	234	.	1	1044250	1044250
UN	235	.	1	1044252	1044254
UN	236	.	1	1082740	1087968
UN	237	.	1	1481616	1496551
UN	238	.	1	1621301	1626051
UN	239	.	1	1654132	1654947
UN	240	.	1	1719058	1723838
UN	241	.	1	1788277	1788363