#=GENOME_DIFF	1.0
#=CREATED	14:41:46 20 Jan 2022
#=PROGRAM	breseq 0.35.4 
#=COMMAND	breseq -j 6 -r /data/p127804/PROJECTS/JanMaarten/Yanyan_202201_SNP/genomes/Aa4S.gbk /data/p127804/PROJECTS/JanMaarten/Yanyan_202201_SNP/fastq/ATCC_S10_L001_R1_001.fastq.gz -o /data/p127804/PROJECTS/JanMaarten/Yanyan_202201_SNP/breseq_results/ATCC_vs_gbk4S
#=REFSEQ	/data/p127804/PROJECTS/JanMaarten/Yanyan_202201_SNP/genomes/Aa4S.gbk
#=READSEQ	/data/p127804/PROJECTS/JanMaarten/Yanyan_202201_SNP/fastq/ATCC_S10_L001_R1_001.fastq.gz
#=CONVERTED-BASES	194754060
#=CONVERTED-READS	902159
#=INPUT-BASES	194778000
#=INPUT-READS	902843
#=MAPPED-BASES	180831207
#=MAPPED-READS	839350
SNP	1	3750	1	1276	T
SNP	2	3751	1	1525	A
SNP	3	3752	1	1710	C
SNP	4	3753	1	2015	C
SNP	5	3754	1	2911	G
SNP	6	3755	1	4364	T
SNP	7	3756	1	5160	T
SNP	8	3757	1	5213	G
SNP	9	3758	1	5217	T
SNP	10	3759	1	6336	A
SNP	11	3760	1	7403	T
SNP	12	3761	1	8760	A
SNP	13	3762	1	9527	C
SNP	14	3763	1	10519	A
SNP	15	3764	1	11063	T
SNP	16	3765	1	11608	G
SNP	17	3766	1	11858	G
SNP	18	3767	1	12389	T
SNP	19	3768	1	12910	T
SNP	20	3769	1	13458	G
SNP	21	3770	1	13741	C
SNP	22	3771	1	14038	A
SNP	23	3772	1	15675	G
SNP	24	3773	1	15956	T
SNP	25	3774	1	17307	C
SNP	26	3775	1	18266	G
SNP	27	3776	1	18306	A
SNP	28	3777	1	19380	G
SNP	29	3778	1	20739	A
SNP	30	3779	1	21692	A
SNP	31	3781	1	26688	T
INS	32	3782	1	26717	A
SNP	33	3783	1	26774	C
SNP	34	3784	1	26914	G
SNP	35	3785	1	27211	T
SNP	36	3786	1	27823	T
SNP	37	3787	1	30427	G
SNP	38	3788	1	30452	G
SNP	39	3789	1	30537	A
SNP	40	3790	1	33283	G
SNP	41	3791	1	34002	G
SNP	42	3792	1	35182	T
SNP	43	3793	1	37264	A
SNP	44	3794	1	39547	A
SNP	45	3795	1	40019	A
SNP	46	3796	1	43214	C
SNP	47	3797	1	43688	G
SNP	48	3805	1	44660	T
SNP	49	3806	1	45724	G
SNP	50	3807	1	50933	T
SNP	51	3808	1	51100	A
SNP	52	3809	1	51570	C
SNP	53	3810	1	52165	C
SNP	54	3811	1	53772	C
SNP	55	3818	1	55870	A
SNP	56	3819	1	56488	G
SNP	57	3820	1	57007	T
SNP	58	3821	1	57255	A
SNP	59	3822	1	57406	T
SNP	60	3823	1	58153	C
INS	61	3824	1	58236	A
DEL	62	3825	1	58241	1
SNP	63	3826	1	58701	T
SNP	64	3827	1	59648	G
SNP	65	3828	1	60722	G
SNP	66	3829	1	64460	T
SNP	67	3830	1	66513	T
SNP	68	3831	1	66568	T
SNP	69	3832	1	67118	C
SNP	70	3833	1	67137	T
SNP	71	3834	1	67911	A
SNP	72	3835	1	68233	G
SNP	73	3836	1	68684	G
SNP	74	3837	1	70664	A
SNP	75	3838	1	71237	A
SNP	76	3839	1	72047	G
SNP	77	3840	1	74013	G
SNP	78	3841	1	74684	T
DEL	79	7934,8006	1	74782	21	repeat_length=7	repeat_new_copies=2	repeat_ref_copies=5	repeat_seq=GAAGCCA
SUB	80	7935,8007	1	75186	1460	ACCGATGTTACACAAGCCGCTGACGTAATCGGT
DEL	81	7936,8008	1	77030	39
SNP	82	3842	1	77959	A
SNP	83	3843	1	80720	C
SNP	84	3844	1	80794	C
SNP	85	3845	1	81807	G
SNP	86	3846	1	82935	T
INS	87	3847	1	84215	T	repeat_length=1	repeat_new_copies=9	repeat_ref_copies=8	repeat_seq=T
SNP	88	3848	1	85027	T
SNP	89	3849	1	86315	G
SNP	90	3850	1	87182	A
INS	91	3851	1	89368	G
INS	92	3852	1	89439	A	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=7	repeat_seq=A
SNP	93	3853	1	92107	G
SNP	94	3854	1	92397	C
SNP	95	3855	1	95486	G
SNP	96	3856	1	95726	T
INS	97	3857,3858	1	97407	GG
SNP	98	3859	1	97430	G
SNP	99	3860	1	97862	T
SNP	100	3861	1	97978	G
SNP	101	3862	1	98619	T
SNP	102	3863	1	99008	G
SNP	103	3864	1	103423	C
SNP	104	3865	1	105693	G
DEL	105	3866	1	105962	1
SNP	106	3867	1	107517	C
SNP	107	3868	1	110852	A
SNP	108	3869	1	111719	A
DEL	109	7937,8011	1	111888	17
SNP	110	3870	1	112189	A
SNP	111	3871	1	112249	A
SNP	112	3872	1	112670	T
SNP	113	3873	1	112808	G
SNP	114	3874	1	113339	A
SNP	115	3875	1	117692	G
SNP	116	3876	1	118650	T
SNP	117	3877	1	119058	C
SNP	118	3878	1	121197	G
SNP	119	3879	1	121507	T
SNP	120	3880	1	122271	C
SNP	121	3881	1	123889	C
SNP	122	3882	1	125814	G
SNP	123	3883	1	126245	C
SNP	124	3884	1	126279	A
SNP	125	3885	1	126580	T
SNP	126	3886	1	127608	G
SNP	127	3887	1	127739	A
SNP	128	3888	1	128277	A
SNP	129	3889	1	128796	A
SNP	130	3890	1	129992	G
SNP	131	3891	1	130610	T
SNP	132	3892	1	131236	A
SNP	133	3893	1	132318	T
SNP	134	3894	1	133846	G
SNP	135	3895	1	133909	A
SNP	136	3896	1	134636	A
SNP	137	3897	1	134747	C
SNP	138	3898	1	135425	T
SNP	139	3899	1	135786	A
SNP	140	3900	1	136510	G
SNP	141	3902	1	137616	T
SNP	142	3903	1	137790	A
SNP	143	3904	1	138500	T
SNP	144	3905	1	139246	G
SNP	145	3906	1	139714	A
SNP	146	3907	1	139956	A
SNP	147	3911	1	140162	G
SNP	148	3912	1	141011	G
SNP	149	3913	1	142259	A
SNP	150	3914	1	142952	G
SNP	151	3915	1	144702	A
SNP	152	3916	1	145752	A
SNP	153	3917	1	146533	G
SNP	154	3918	1	147786	C
SNP	155	3919	1	148483	A
SNP	156	3920	1	148634	G
SNP	157	3921	1	149860	G
SNP	158	3922	1	149864	T
SNP	159	3923	1	151967	A
SNP	160	3924	1	153752	G
SNP	161	3928	1	154678	T
SNP	162	3929	1	154941	A
SNP	163	3930	1	155240	T
SNP	164	3931	1	155618	A
SNP	165	3932	1	156981	T
SNP	166	3933	1	157256	T
SNP	167	3934	1	157756	G
SNP	168	3935	1	158058	A
SNP	169	3938	1	160593	G
SNP	170	3939	1	161815	C
SNP	171	3940	1	163033	A
SNP	172	3941	1	164154	T
SNP	173	3942	1	165732	C
SNP	174	3943	1	166775	T
SNP	175	3944	1	167107	T
SNP	176	3945	1	167739	A
SNP	177	3946	1	167947	C
DEL	178	3947	1	168692	1	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=9	repeat_seq=A
SNP	179	3948	1	169120	T
SNP	180	3949	1	169239	G
SNP	181	3950	1	171066	G
DEL	182	7938,8014	1	171208	6	repeat_length=6	repeat_new_copies=2	repeat_ref_copies=3	repeat_seq=ACGCGC
SNP	183	3951	1	171216	A
SNP	184	3952	1	171581	A
SNP	185	3953	1	172218	G
SNP	186	3954	1	172285	C
SNP	187	3955	1	173472	G
SNP	188	3956	1	175001	C
SNP	189	3957	1	175154	G
SNP	190	3958	1	177308	T
SNP	191	3959	1	179477	T
SNP	192	3960	1	183605	C
SNP	193	3961	1	184392	C
SNP	194	3962	1	184672	G
SNP	195	3963	1	184732	C
SNP	196	3964	1	186848	A
SNP	197	3965	1	188582	A
SNP	198	3966	1	189410	T
SNP	199	3967	1	189668	C
SNP	200	3968	1	191791	C
SNP	201	3969	1	191939	G
SNP	202	3970	1	192869	C
SNP	203	3971	1	193583	G
SNP	204	3972	1	193862	T
SNP	205	3973	1	197569	T
SUB	206	7939,8016	1	197628	1526	TATTACTACTGCCGGA
SNP	207	3974	1	199357	C
INS	208	8017	1	199738	TTTC
SNP	209	3975	1	202696	G
SNP	210	3976	1	202904	G
SNP	211	3977	1	206893	C
SNP	212	3978	1	208033	G
SNP	213	3979	1	209828	T
SNP	214	3980	1	210179	C
SNP	215	3981	1	210456	A
SNP	216	3982	1	210816	C
SNP	217	3983	1	211013	T
SNP	218	3984	1	212274	A
SNP	219	3985	1	212446	T
SNP	220	3986	1	213051	A
SNP	221	3987	1	213891	A
DEL	222	7940,8018	1	214396	388
SNP	223	3988	1	215642	C
SNP	224	3989	1	215793	G
SNP	225	3991	1	217959	A
SNP	226	3992	1	218586	G
SNP	227	3993	1	219834	A
SNP	228	3994	1	220563	G
SNP	229	3995	1	222139	C
SNP	230	3996	1	222977	T
SNP	231	3997	1	224162	C
SNP	232	3998	1	225539	A
SNP	233	3999	1	227728	T
SNP	234	4000	1	229827	A
SNP	235	4001	1	229848	A
SNP	236	4002	1	231672	A
SNP	237	4003	1	233521	G
SNP	238	4004	1	236590	T
SNP	239	4005	1	236633	G
SNP	240	4006	1	237197	A
SNP	241	4007	1	238279	T
SNP	242	4008	1	238946	T
SNP	243	4009	1	239495	C
SNP	244	4010	1	239512	G
SNP	245	4011	1	242533	C
SNP	246	4012	1	244062	G
SNP	247	4013	1	244419	A
SNP	248	4014	1	245478	A
SNP	249	4015	1	245942	C
SNP	250	4016	1	246101	T
SNP	251	4017	1	246304	A
SNP	252	4018	1	246347	A
SNP	253	4019	1	246479	G
SNP	254	4025	1	246820	G
SNP	255	4027	1	247580	G
SNP	256	4028	1	248818	G
SNP	257	4029	1	250089	C
SNP	258	4030	1	251409	T
SNP	259	4031	1	255881	C
SNP	260	4032	1	256265	T
SNP	261	4033	1	257147	T
SNP	262	4034	1	257742	A
SNP	263	4035	1	259600	G
SNP	264	4036	1	260108	C
SNP	265	4038	1	261375	A
SNP	266	4039	1	269948	T
SNP	267	4040	1	270110	T
SNP	268	4041	1	270892	A
SNP	269	4042	1	271971	T
SNP	270	4043	1	274059	A
SNP	271	4044	1	274151	T
DEL	272	7942,8027	1	274804	63
SNP	273	4045	1	275786	C
SNP	274	4046	1	276401	T
INS	275	8028	1	277174	AAT
SNP	276	4047	1	278919	T
SNP	277	4048	1	280360	T
SNP	278	4049	1	282327	T
SNP	279	4054	1	284087	A
SNP	280	4055	1	285754	A
DEL	281	4056	1	289614	1	repeat_length=1	repeat_new_copies=5	repeat_ref_copies=6	repeat_seq=T
SNP	282	4057	1	290145	A
SNP	283	4058	1	291262	A
SNP	284	4059	1	291698	C
DEL	285	7943,8033	1	293098	19
SNP	286	4060	1	293248	C
SNP	287	4061	1	296489	T
SNP	288	4062	1	298588	C
SNP	289	4065	1	299230	C
SNP	290	4066	1	300438	T
SNP	291	4067	1	301371	A
SNP	292	4068	1	303373	T
SNP	293	4069	1	304064	T
SNP	294	4070	1	306497	C
SNP	295	4071	1	306941	T
SNP	296	4072	1	307145	T
SNP	297	4073	1	307244	C
SNP	298	4074	1	307324	C
SNP	299	4075	1	307958	C
SNP	300	4076	1	308680	A
SNP	301	4077	1	309762	G
INS	302	4078	1	310399	C
SNP	303	4079	1	312621	A
SNP	304	4080	1	313016	C
SNP	305	4081	1	313624	A
SNP	306	4082	1	316475	G
SNP	307	4083	1	316576	C
SNP	308	4084	1	316667	T
SNP	309	4085	1	317849	T
SNP	310	4086	1	318903	G
SNP	311	4087	1	320418	C
SNP	312	4088	1	321437	C
SNP	313	4089	1	321922	C
SNP	314	4090	1	322384	C
SNP	315	4091	1	323635	G
SNP	316	4092	1	324126	T
SNP	317	4093	1	326418	C
SNP	318	4094	1	328265	T
SNP	319	4095	1	328301	T
SNP	320	4096	1	328550	T
SNP	321	4097	1	331759	C
SNP	322	4098	1	333098	C
SNP	323	4099	1	333266	T
SNP	324	4100	1	334477	G
SNP	325	4101	1	337645	A
SNP	326	4102	1	340074	G
SNP	327	4103	1	340969	G
SNP	328	4104	1	341479	C
SNP	329	4105	1	345306	T
SNP	330	4106	1	346625	C
SNP	331	4107	1	347035	A
SNP	332	4108	1	347777	G
SNP	333	4109	1	347983	G
SNP	334	4110	1	348779	A
SNP	335	4111	1	348849	T
SNP	336	4112	1	348983	T
SNP	337	4113	1	349688	T
SNP	338	4114	1	349691	G
SNP	339	4115	1	350719	T
SNP	340	4120	1	351526	G
SNP	341	4121	1	351534	A
SNP	342	4126	1	352492	A
SNP	343	4127	1	352721	G
SNP	344	4128	1	357096	A
SNP	345	4129	1	357595	A
SNP	346	4130	1	357833	T
SNP	347	4131	1	358071	A
SNP	348	4132	1	358658	G
SNP	349	4134	1	359746	A
SNP	350	4135	1	360132	G
SNP	351	4136	1	362963	G
SNP	352	4137	1	363893	G
SNP	353	4138	1	370437	C
SNP	354	4139	1	371255	G
SNP	355	4140	1	371880	T
SNP	356	4141	1	372028	G
SNP	357	4142	1	374046	T
SNP	358	4143	1	374886	G
SNP	359	4144	1	375593	T
INS	360	4147	1	376659	A	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=A
SNP	361	4148	1	376724	T
DEL	362	8041	1	377617	3	repeat_length=3	repeat_new_copies=2	repeat_ref_copies=3	repeat_seq=CAA
SNP	363	4150	1	378411	T
SNP	364	4151	1	379751	T
SNP	365	4152	1	380711	A
SNP	366	4153	1	381685	T
SNP	367	4154	1	381797	G
SNP	368	4155	1	382045	A
SNP	369	4160	1	382776	A
SNP	370	4161	1	383407	C
SNP	371	4162	1	383554	G
SNP	372	4163	1	383988	C
SNP	373	4164	1	384273	A
SNP	374	4165	1	386322	C
SNP	375	4166	1	386428	G
SNP	376	4167	1	387111	A
SNP	377	4168	1	387403	T
DEL	378	7946,8042	1	387959	393
SNP	379	4169	1	388577	C
INS	380	4170	1	389048	A
SNP	381	4171	1	389289	T
SNP	382	4174	1	392968	G
SNP	383	4175	1	394458	G
SNP	384	4176	1	395485	G
SNP	385	4177	1	397330	G
SNP	386	4178	1	397685	A
SNP	387	4179	1	398125	T
SNP	388	4180	1	400202	A
SNP	389	4181	1	403510	C
SNP	390	4182	1	403901	G
SNP	391	4183	1	405979	C
SNP	392	4184	1	406763	C
SNP	393	4185	1	407208	T
SNP	394	4186	1	407309	C
DEL	395	7947,8044	1	407490	1329
SNP	396	4187	1	409174	A
SNP	397	4188	1	409805	G
SNP	398	4189	1	410068	G
SNP	399	4190	1	410245	C
SNP	400	4191	1	410666	G
SNP	401	4193	1	418354	A
SNP	402	4194	1	419361	T
SNP	403	4195	1	420270	G
SNP	404	4196	1	421899	G
SNP	405	4197	1	422310	C
SUB	406	7950,8046	1	423259	53	CAGCAGCAAATTCGGGCGTTGCCACACGATGAGCGCCAGCACCAGACGCGCTTTTTCGCCGCCGGAAAAAGAAGCAACCGGTTGATTCA
SNP	407	4198	1	423316	A
DEL	408	7951,8047	1	426829	1609
DEL	409	4199	1	428690	1	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=7	repeat_seq=A
SNP	410	4200	1	428979	A
SNP	411	4201	1	429002	T
SNP	412	4202	1	429017	G
SNP	413	4203	1	429025	T
SNP	414	4204	1	429027	T
DEL	415	4205	1	429039	1	repeat_length=1	repeat_new_copies=5	repeat_ref_copies=6	repeat_seq=T
SNP	416	4206	1	429058	T
SNP	417	4207	1	429168	A
SNP	418	4208	1	429186	C
SUB	419	4209,4210	1	429188	2	TG
SNP	420	4211	1	429191	T
SUB	421	4212,4213	1	429209	2	TG
SNP	422	4214	1	429216	A
SNP	423	4215	1	429225	C
SNP	424	4216	1	429230	T
SNP	425	4217	1	429232	A
SUB	426	4218,4219	1	429249	2	CT
SNP	427	4220	1	429255	G
SNP	428	4221	1	429275	A
SNP	429	4222	1	429279	C
DEL	430	7952,8048	1	429393	9084
SNP	431	4223	1	438673	T
SNP	432	4224	1	438677	G
SNP	433	4225	1	439186	C
SNP	434	4226	1	439377	G
SNP	435	4227	1	441638	A
SNP	436	4228	1	441897	A
SNP	437	4229	1	443559	G
SNP	438	4230	1	443614	G
SNP	439	4231	1	444008	G
SNP	440	4232	1	444107	G
SNP	441	4233	1	444250	T
SNP	442	4234	1	444944	C
SNP	443	4235	1	445015	G
SNP	444	4236	1	445362	G
SNP	445	4237	1	445634	A
SNP	446	4238	1	445701	C
DEL	447	4239	1	445967	1
SNP	448	4240	1	446792	A
SNP	449	4241	1	446860	T
SNP	450	4242	1	447321	T
SNP	451	4243	1	447408	A
SNP	452	4244	1	448798	G
SNP	453	4245	1	449163	C
SNP	454	4246	1	450548	C
SNP	455	4247	1	450944	C
SNP	456	4248	1	451383	A
SNP	457	4249	1	453107	C
SNP	458	4250	1	453189	G
SNP	459	4251	1	453416	C
SNP	460	4252	1	454099	C
SNP	461	4253	1	454354	A
SNP	462	4254	1	454398	C
SNP	463	4255	1	454571	A
SNP	464	4256	1	458613	G
SNP	465	4257	1	458706	T
SNP	466	4258	1	458820	A
SNP	467	4259	1	459538	G
SNP	468	4260	1	459595	T
SNP	469	4261	1	459961	T
SNP	470	4262	1	460135	G
SNP	471	4264	1	460256	G
SNP	472	4265	1	461095	T
SNP	473	4266	1	461297	G
INS	474	4267	1	461312	A	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=A
SNP	475	4268	1	461778	C
SNP	476	4269	1	461910	C
SNP	477	4270	1	462468	G
SNP	478	4271	1	463863	C
SNP	479	4272	1	464458	G
SNP	480	4273	1	466142	A
SNP	481	4274	1	466200	C
SNP	482	4275	1	466293	A
SNP	483	4276	1	466823	T
SNP	484	4277	1	468483	G
SNP	485	4278	1	468737	C
SNP	486	4279	1	469120	T
SNP	487	4280	1	469180	T
SNP	488	4281	1	470044	C
SNP	489	4282	1	470338	G
SNP	490	4283	1	470809	A
SNP	491	4284	1	471767	G
SNP	492	4285	1	472167	T
SNP	493	4286	1	472906	T
SNP	494	4287	1	473306	C
SNP	495	4288	1	473972	A
SNP	496	4289	1	474140	G
SNP	497	4290	1	474322	G
SNP	498	4291	1	474516	C
SNP	499	4292	1	475965	C
SNP	500	4293	1	475995	G
SNP	501	4294	1	476085	G
SNP	502	4295	1	476130	C
SNP	503	4296	1	476958	A
SNP	504	4297	1	477687	G
SNP	505	4298	1	479513	G
SNP	506	4299	1	480106	G
SNP	507	4300	1	480426	T
SNP	508	4301	1	481115	G
SNP	509	4303	1	481951	G
SNP	510	4304	1	482299	T
SNP	511	4305	1	483218	C
SNP	512	4306	1	483879	C
SNP	513	4308	1	484384	C
SNP	514	4309	1	484651	T
SNP	515	4310	1	484871	T
SNP	516	4312	1	486259	T
SNP	517	4313	1	486387	A
SNP	518	4319	1	490841	G
SNP	519	4320	1	490992	C
SNP	520	4321	1	491206	C
SNP	521	4322	1	491935	G
SNP	522	4323	1	494932	G
SNP	523	4324	1	495428	C
SNP	524	4325	1	497428	A
SNP	525	4326	1	497647	T
SNP	526	4327	1	497862	T
SNP	527	4330	1	499656	C
SNP	528	4331	1	499923	C
SNP	529	4332	1	500200	A
SNP	530	4333	1	500228	C
SNP	531	4334	1	501229	T
SNP	532	4335	1	502111	A
SNP	533	4336	1	503140	A
SNP	534	4337	1	503678	C
SNP	535	4338	1	504398	C
SNP	536	4339	1	504511	A
SNP	537	4340	1	504596	T
SNP	538	4341	1	504748	C
SNP	539	4342	1	507024	A
SNP	540	4343	1	507271	G
SNP	541	4344	1	508521	G
SNP	542	4345	1	508578	G
DEL	543	7953,8052	1	508612	4
SNP	544	4346	1	508920	G
SNP	545	4347	1	509011	C
SNP	546	4348	1	509651	T
SNP	547	4349	1	509808	T
SNP	548	4350	1	510314	C
SNP	549	4351	1	511992	G
SNP	550	4352	1	512350	G
SNP	551	4354	1	513908	C
SNP	552	4355	1	515003	C
SNP	553	4356	1	515172	A
SNP	554	4357	1	515788	C
SNP	555	4358	1	516357	A
SNP	556	4359	1	516701	G
SNP	557	4360	1	517399	A
SNP	558	4361	1	517520	G
SNP	559	4362	1	517687	C
SNP	560	4363	1	518260	G
SNP	561	4364	1	519079	T
SNP	562	4367	1	522393	C
SNP	563	4368	1	522441	G
SNP	564	4369	1	526493	C
SNP	565	4370	1	530977	A
SNP	566	4371	1	533286	C
INS	567	4372	1	534064	T	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=5	repeat_seq=T
SNP	568	4373	1	534212	A
SNP	569	4374	1	534757	T
INS	570	4375	1	535189	T
SNP	571	4376	1	536398	G
SNP	572	4377	1	537152	G
SNP	573	4378	1	537897	C
SNP	574	4379	1	539356	A
SNP	575	4380	1	540089	A
SNP	576	4381	1	540664	C
SNP	577	4383	1	543051	C
INS	578	8054	1	545607	TTATT	repeat_length=5	repeat_new_copies=2	repeat_ref_copies=1	repeat_seq=TTATT
DEL	579	4384	1	545733	1
SNP	580	4385	1	546312	A
SNP	581	4386	1	547010	C
SNP	582	4387	1	547485	C
SNP	583	4388	1	547944	T
SNP	584	4389	1	549512	G
SNP	585	4390	1	550922	T
SNP	586	4391	1	551059	T
SNP	587	4392	1	551097	T
DEL	588	4393	1	552098	1
SNP	589	4394	1	552673	C
SNP	590	4395	1	552952	T
SNP	591	4396	1	553873	A
SNP	592	4397	1	554230	A
SNP	593	4398	1	554832	C
SNP	594	4401	1	557110	C
SNP	595	4402	1	558033	A
INS	596	4403	1	558058	A	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=A
SNP	597	4404	1	558082	T
SNP	598	4405	1	558105	C
SNP	599	4406	1	558161	G
SNP	600	4407	1	559806	A
SNP	601	4408	1	561217	C
SNP	602	4409	1	561875	A
SNP	603	4410	1	563118	G
SNP	604	4411	1	565662	C
SNP	605	4412	1	565841	G
SNP	606	4413	1	566271	G
SNP	607	4414	1	566288	C
SNP	608	4415	1	569018	T
SNP	609	4416	1	569315	C
SNP	610	4417	1	571287	C
SNP	611	4418	1	571762	A
SNP	612	4419	1	571819	G
SNP	613	4420	1	572184	C
SNP	614	4421	1	572813	T
SNP	615	4422	1	574574	G
SNP	616	4423	1	575771	A
SNP	617	4424	1	576540	G
SNP	618	4425	1	576542	C
SNP	619	4426	1	578201	C
SNP	620	4427	1	578228	A
SNP	621	4428	1	578948	C
SNP	622	4429	1	579106	A
SNP	623	4430	1	580380	T
SNP	624	4431	1	583914	T
SNP	625	4432	1	583990	T
SNP	626	4433	1	584212	T
SNP	627	4434	1	584541	C
SNP	628	4438	1	585577	G
SNP	629	4439	1	586277	G
SNP	630	4440	1	587750	A
SNP	631	4441	1	588950	G
SNP	632	4442	1	590084	T
SNP	633	4444	1	590617	G
SNP	634	4445	1	590656	G
SNP	635	4446	1	590968	G
SNP	636	4447	1	592979	T
SNP	637	4448	1	593451	A
SNP	638	4460	1	595584	T
SNP	639	4462	1	596436	A
SNP	640	4464	1	599492	T
SNP	641	4465	1	600485	T
SNP	642	4466	1	601088	T
SNP	643	4467	1	602000	C
SNP	644	4468	1	604534	T
SNP	645	4469	1	604741	G
SNP	646	4470	1	605121	A
SNP	647	4471	1	605905	C
SNP	648	4472	1	606127	A
SNP	649	4473	1	606748	T
SNP	650	4474	1	609390	G
SNP	651	4475	1	610269	T
SNP	652	4476	1	610508	C
SNP	653	4477	1	610640	G
SNP	654	4478	1	612307	C
DEL	655	7954,8061	1	617649	3	repeat_length=3	repeat_new_copies=1	repeat_ref_copies=2	repeat_seq=AAT
SNP	656	4479	1	617755	G
DEL	657	4480	1	619585	1	repeat_length=1	repeat_new_copies=4	repeat_ref_copies=5	repeat_seq=C
SNP	658	4481	1	620026	C
SNP	659	4482	1	620107	T
SNP	660	4483	1	622390	A
SNP	661	4484	1	623203	C
SNP	662	4485	1	623217	C
SNP	663	4486	1	624203	A
SNP	664	4487	1	625266	A
SNP	665	4488	1	625477	C
SNP	666	4489	1	625942	G
SNP	667	4490	1	626274	T
SNP	668	4491	1	626694	G
SNP	669	4492	1	627470	C
SNP	670	4493	1	627729	G
SNP	671	4494	1	628654	A
SNP	672	4495	1	628798	T
SNP	673	4496	1	628830	A
SNP	674	4497	1	628865	C
DEL	675	4498	1	628872	1
SNP	676	4499	1	629087	A
SNP	677	4500	1	629826	A
SNP	678	4501	1	630423	A
SNP	679	4502	1	631192	C
SNP	680	4503	1	632112	G
SNP	681	4504	1	632267	A
SNP	682	4506	1	633182	C
SNP	683	4507	1	633509	G
SNP	684	4508	1	633967	A
SNP	685	4509	1	634267	A
SNP	686	4510	1	634500	G
SNP	687	4511	1	635114	C
SNP	688	4512	1	635759	G
SNP	689	4513	1	635777	G
SNP	690	4514	1	635783	A
SNP	691	4515	1	635786	A
SNP	692	4516	1	635792	C
SNP	693	4517	1	635794	C
SNP	694	4518	1	635798	T
SNP	695	4519	1	635802	G
SNP	696	4520	1	635813	C
SNP	697	4521	1	636111	C
SNP	698	4522	1	636181	C
SNP	699	4523	1	636341	G
SNP	700	4524	1	636377	A
SNP	701	4525	1	636459	C
SUB	702	4526,4527	1	636632	2	CA
SNP	703	4528	1	636642	G
SNP	704	4529	1	636645	A
SNP	705	4530	1	636651	A
SNP	706	4531	1	636702	C
SNP	707	4532	1	636717	G
SNP	708	4533	1	636747	C
SNP	709	4534	1	636757	C
SNP	710	4535	1	637032	C
SNP	711	4536	1	637035	G
SNP	712	4537	1	637194	A
SNP	713	4538	1	637212	C
SUB	714	4539,4540	1	637214	2	GC
SNP	715	4541	1	637265	G
SNP	716	4542	1	637315	T
SNP	717	4543	1	637449	C
SNP	718	4544	1	637497	A
SNP	719	4545	1	637575	G
SNP	720	4546	1	637599	T
SNP	721	4547	1	637628	T
SNP	722	4548	1	637643	A
SNP	723	4549	1	637773	T
SNP	724	4550	1	637933	G
SNP	725	4551	1	637966	G
SNP	726	4552	1	637981	A
SNP	727	4553	1	638085	G
SNP	728	4554	1	638140	A
SNP	729	4555	1	638211	C
SNP	730	4556	1	638265	G
SNP	731	4557	1	638364	G
SNP	732	4558	1	638368	G
SNP	733	4559	1	638409	A
SNP	734	4560	1	638452	A
SNP	735	4561	1	638526	G
SNP	736	4562	1	638683	C
SNP	737	4563	1	638700	G
SNP	738	4564	1	638712	C
SNP	739	4565	1	638715	T
SUB	740	4566,4567	1	638717	2	AT
SNP	741	4568	1	638724	T
SNP	742	4569	1	638726	G
SUB	743	4570,4571	1	638740	2	AT
SNP	744	4572	1	638751	G
SNP	745	4573	1	638781	T
SNP	746	4574	1	638822	A
SNP	747	4575	1	638868	A
SNP	748	4576	1	638955	C
SNP	749	4577	1	639108	T
SNP	750	4578	1	639141	G
SUB	751	4579,4580	1	639207	2	TT
INS	752	4581	1	639214	T
SNP	753	4582	1	639242	A
SNP	754	4583	1	639246	C
SNP	755	4584	1	639252	T
SNP	756	4585	1	639255	A
SNP	757	4586	1	639267	G
SNP	758	4587	1	639294	G
SNP	759	4588	1	639366	G
SNP	760	4589	1	639387	C
SNP	761	4590	1	639414	A
SNP	762	4591	1	639417	G
SNP	763	4592	1	639429	T
SNP	764	4593	1	639473	G
SNP	765	4594	1	639477	G
SNP	766	4595	1	639674	T
SNP	767	4596	1	639931	C
SNP	768	4597	1	640588	A
SNP	769	4598	1	640682	T
SNP	770	4599	1	641296	G
SNP	771	4600	1	641326	C
SNP	772	4601	1	641647	T
SNP	773	4602	1	642245	T
SNP	774	4603	1	642248	T
SNP	775	4604	1	642354	A
SUB	776	4605,4606	1	642383	2	CA
SNP	777	4607	1	642503	C
SNP	778	4608	1	642507	A
SNP	779	4609	1	642560	T
SNP	780	4610	1	642579	T
SNP	781	4611	1	642612	C
SNP	782	4612	1	642626	C
SNP	783	4613	1	642930	G
SNP	784	4614	1	643050	C
SNP	785	4615	1	643069	G
SNP	786	4616	1	643111	C
SNP	787	4617	1	643149	G
SNP	788	4618	1	643185	C
SNP	789	4619	1	643195	G
SNP	790	4620	1	643512	A
SNP	791	4621	1	643542	T
SUB	792	4622,4623	1	643713	2	TT
SUB	793	4624,4625	1	644060	2	GC
SNP	794	4626	1	644074	C
SNP	795	4627	1	644079	T
SUB	796	4628,4629	1	644106	2	TG
SNP	797	4630	1	644142	T
SNP	798	4631	1	644211	T
SNP	799	4632	1	644214	G
SNP	800	4633	1	644223	T
SNP	801	4634	1	644232	T
SNP	802	4635	1	644241	G
SNP	803	4636	1	644245	T
SNP	804	4637	1	644247	G
SNP	805	4638	1	644295	T
SNP	806	4639	1	644298	C
SNP	807	4640	1	644301	T
SNP	808	4641	1	644304	A
SNP	809	4642	1	644313	T
SNP	810	4643	1	644337	C
SNP	811	4644	1	644340	G
SNP	812	4645	1	644364	T
SNP	813	4646	1	644370	A
SNP	814	4647	1	644379	G
SNP	815	4648	1	644382	A
SNP	816	4649	1	644405	T
SNP	817	4650	1	644451	G
SNP	818	4651	1	644467	T
SNP	819	4652	1	644586	C
SNP	820	4653	1	644602	C
SNP	821	4654	1	644604	A
SNP	822	4655	1	644607	C
SNP	823	4656	1	644637	C
SNP	824	4657	1	644649	C
SNP	825	4658	1	644655	C
SNP	826	4659	1	644667	T
SNP	827	4660	1	644676	A
SNP	828	4661	1	644692	G
SNP	829	4662	1	644700	C
SNP	830	4663	1	644752	C
SNP	831	4664	1	644796	T
SNP	832	4665	1	644814	C
SNP	833	4666	1	644817	C
SNP	834	4667	1	646015	T
SNP	835	4668	1	646576	A
SNP	836	4669	1	646663	A
INS	837	4670,4671	1	647021	TG
SNP	838	4672	1	647087	T
SNP	839	4673	1	648741	G
SNP	840	4674	1	649119	C
SNP	841	4675	1	649377	C
SNP	842	4676	1	649451	A
SNP	843	4677	1	649641	C
SNP	844	4680	1	651828	G
SNP	845	4681	1	653673	T
SNP	846	4682	1	654771	G
SNP	847	4683	1	656344	C
SNP	848	4684	1	656793	A
SNP	849	4685	1	657342	G
SNP	850	4686	1	657918	A
SNP	851	4687	1	658015	A
SNP	852	4688	1	660002	C
SNP	853	4689	1	660984	T
SNP	854	4690	1	663048	T
SNP	855	4691	1	666141	T
SNP	856	4692	1	666997	G
SNP	857	4693	1	667532	C
SNP	858	4694	1	668669	A
SNP	859	4695	1	669164	G
SNP	860	4696	1	669564	T
SNP	861	4697	1	671276	G
SNP	862	4698	1	671499	C
SNP	863	4699	1	672521	G
SNP	864	4700	1	673304	A
SNP	865	4701	1	674021	C
SNP	866	4702	1	674316	C
SNP	867	4703	1	675014	G
SNP	868	4704	1	675207	G
SNP	869	4705	1	675473	T
SNP	870	4706	1	675833	C
SNP	871	4707	1	676876	C
SNP	872	4708	1	677702	A
SNP	873	4709	1	677805	C
SNP	874	4710	1	679610	T
SNP	875	4711	1	682714	C
SNP	876	4712	1	682723	G
SNP	877	4713	1	682908	C
SNP	878	4714	1	686828	T
SNP	879	4715	1	687243	G
SNP	880	4718	1	691513	T
SNP	881	4719	1	691611	G
SNP	882	4724	1	692133	A
DEL	883	4725	1	692150	1
SNP	884	4726	1	693629	T
SNP	885	4727	1	694134	T
SNP	886	4728	1	696009	A
SNP	887	4729	1	698631	G
SNP	888	4730	1	698752	G
INS	889	4731	1	699045	A	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=A
SNP	890	4732	1	699154	T
INS	891	4733	1	704728	T
SNP	892	4734	1	706154	A
SNP	893	4735	1	706357	A
SNP	894	4736	1	706366	A
SNP	895	4737	1	706434	G
SNP	896	4738	1	707013	G
SNP	897	4739	1	708394	G
SNP	898	4740	1	709143	C
SNP	899	4741	1	709527	T
SNP	900	4742	1	712147	A
SNP	901	4743	1	712547	C
SNP	902	4744	1	716463	C
SNP	903	4745	1	717017	A
SNP	904	4746	1	717901	A
SNP	905	4747	1	720019	T
SNP	906	4748	1	720563	T
SNP	907	4749	1	721372	T
SNP	908	4750	1	723852	T
SNP	909	4751	1	725836	T
SNP	910	4752	1	728157	C
INS	911	4753	1	728656	T
SNP	912	4754	1	728665	A
SNP	913	4755	1	729178	A
SNP	914	4756	1	729244	C
SNP	915	4757	1	731843	C
SNP	916	4758	1	732396	G
SNP	917	4759	1	733723	T
SNP	918	4760	1	734406	C
SNP	919	4761	1	735072	A
SNP	920	4763	1	737344	G
SNP	921	4764	1	740251	G
SNP	922	4765	1	744305	A
SNP	923	4766	1	744578	T
SNP	924	4767	1	744643	C
SNP	925	4768	1	745226	T
SNP	926	4769	1	747418	T
SNP	927	4770	1	747450	G
SNP	928	4771	1	747588	T
SNP	929	4772	1	748192	T
SNP	930	4773	1	749642	C
SNP	931	4775	1	753771	C
SNP	932	4776	1	753979	C
SNP	933	4777	1	754660	A
SNP	934	4778	1	754873	C
SNP	935	4779	1	754910	C
SNP	936	4780	1	755400	C
SNP	937	4781	1	755630	C
SNP	938	4782	1	755759	T
SNP	939	4783	1	755861	G
SNP	940	4784	1	756301	T
SNP	941	4785	1	756986	A
SNP	942	4786	1	758553	T
SNP	943	4787	1	758912	T
SNP	944	4788	1	760637	A
SNP	945	4789	1	762009	C
SNP	946	4790	1	762802	T
SNP	947	4791	1	763959	T
SNP	948	4792	1	764320	A
SNP	949	4793	1	764882	T
SNP	950	4794	1	768115	T
SNP	951	4795	1	768141	A
INS	952	4796	1	768602	T
SNP	953	4797	1	768932	G
SNP	954	4798	1	768948	T
SNP	955	4799	1	769676	T
SNP	956	4800	1	770372	C
SNP	957	4801	1	771509	T
SNP	958	4802	1	771733	G
SNP	959	4803	1	771980	C
SNP	960	4804	1	772162	T
SNP	961	4805	1	773388	T
SNP	962	4807	1	780703	G
SNP	963	4808	1	781946	G
SNP	964	4809	1	786745	T
SNP	965	4810	1	786918	T
SNP	966	4811	1	787626	G
SNP	967	4813	1	788497	C
SNP	968	4814	1	789243	C
SNP	969	4815	1	790155	T
SNP	970	4816	1	791036	C
SNP	971	4817	1	791388	T
SNP	972	4818	1	791510	A
SNP	973	4819	1	792406	A
SNP	974	4820	1	792903	G
SNP	975	4822	1	793273	A
SNP	976	4823	1	793685	T
SNP	977	4825	1	797660	A
SNP	978	4826	1	798065	C
SNP	979	4827	1	798637	T
SNP	980	4828	1	800937	C
DEL	981	4829	1	801896	1
SNP	982	4830	1	801948	A
SNP	983	4831	1	802561	C
SNP	984	4832	1	802756	C
SNP	985	4833	1	803258	T
SNP	986	4834	1	803881	C
SNP	987	4835	1	805061	G
SNP	988	4836	1	806062	T
SNP	989	4837	1	807074	G
SNP	990	4838	1	809616	G
INS	991	4839	1	809728	A
SNP	992	4840	1	813639	C
DEL	993	7959,8073	1	813939	10
DEL	994	4841	1	814683	1	repeat_length=1	repeat_new_copies=5	repeat_ref_copies=6	repeat_seq=G
SNP	995	4842	1	816312	G
DEL	996	4843	1	818864	1
SNP	997	4845	1	820524	A
SNP	998	4846	1	820707	A
SNP	999	4847	1	821965	G
SNP	1000	4848	1	822163	G
SNP	1001	4849	1	822235	G
SNP	1002	4850	1	824098	C
SNP	1003	4851	1	824336	A
SNP	1004	4852	1	825364	A
SNP	1005	4853	1	825664	C
SNP	1006	4854	1	826644	C
SNP	1007	4855	1	826785	T
SNP	1008	4856	1	829678	G
SNP	1009	4857	1	830059	G
SNP	1010	4858	1	830435	T
SNP	1011	4859	1	831570	T
SNP	1012	4860	1	831934	A
SNP	1013	4861	1	832685	C
SNP	1014	4862	1	833089	C
SNP	1015	4863	1	833315	T
SNP	1016	4864	1	833532	G
SNP	1017	4865	1	835028	G
SNP	1018	4866	1	835990	C
SNP	1019	4867	1	840130	A
SNP	1020	4868	1	841589	T
SNP	1021	4869	1	842911	C
SNP	1022	4870	1	844036	T
SNP	1023	4871	1	844968	T
SNP	1024	4872	1	845636	T
SNP	1025	4873	1	846908	C
SNP	1026	4874	1	847134	T
SNP	1027	4875	1	847354	G
SNP	1028	4876	1	847549	G
SNP	1029	4877	1	847622	G
SNP	1030	4878	1	848932	C
SNP	1031	4880	1	849612	T
SNP	1032	4881	1	849682	C
SNP	1033	4882	1	849698	T
SNP	1034	4911	1	851703	G
SNP	1035	4912	1	851727	A
SNP	1036	4913	1	851732	A
SNP	1037	4914	1	851745	C
SNP	1038	4915	1	851757	T
SNP	1039	4916	1	851765	C
SNP	1040	4917	1	851785	C
SNP	1041	4918	1	851787	A
SNP	1042	4919	1	851790	T
SNP	1043	4920	1	851793	G
SNP	1044	4921	1	851795	C
SNP	1045	4922	1	851800	T
SUB	1046	4923,4924,4925	1	851808	3	CAT
SNP	1047	4926	1	851818	T
SNP	1048	4927	1	851865	A
SNP	1049	4928	1	851919	G
SUB	1050	4929,4930	1	851935	2	TT
SNP	1051	4931	1	851939	C
SNP	1052	4932	1	851941	G
SUB	1053	4933,4934	1	851960	2	AC
SNP	1054	4935	1	851970	C
SNP	1055	4936	1	851973	G
SNP	1056	4937	1	851981	T
SNP	1057	4938	1	851994	A
SNP	1058	4939	1	851997	C
SNP	1059	4940	1	852015	T
SNP	1060	4941	1	852018	C
SNP	1061	4942	1	852024	A
SNP	1062	4943	1	852041	G
SNP	1063	4944	1	852054	G
SNP	1064	4945	1	852075	A
SNP	1065	4946	1	852279	T
SNP	1066	4947	1	852306	C
SNP	1067	4948	1	852311	T
SNP	1068	4949	1	852314	T
SUB	1069	4950,4951	1	852318	2	GT
SNP	1070	4952	1	852325	C
SNP	1071	4953	1	852342	C
SNP	1072	4954	1	852350	A
SNP	1073	4955	1	852354	T
SNP	1074	4956	1	852360	C
SNP	1075	4957	1	852369	T
SNP	1076	4958	1	852378	C
SNP	1077	4959	1	852398	T
SNP	1078	4960	1	852417	A
SNP	1079	4961	1	852425	T
SNP	1080	4962	1	852429	G
SNP	1081	4963	1	852435	T
SNP	1082	4964	1	852442	T
SNP	1083	4965	1	852444	C
SNP	1084	4966	1	852451	T
SNP	1085	4967	1	852459	T
SNP	1086	4968	1	852468	T
SNP	1087	4969	1	852473	T
SNP	1088	4970	1	852480	G
SNP	1089	4971	1	852516	T
SUB	1090	4972,4973	1	852518	2	CA
SNP	1091	4974	1	852546	A
SNP	1092	4975	1	852552	G
SNP	1093	4976	1	852557	T
SNP	1094	4977	1	852564	G
SNP	1095	4978	1	852566	T
SNP	1096	4979	1	852578	T
SNP	1097	4980	1	852582	T
SNP	1098	4981	1	852600	T
SNP	1099	4982	1	852610	G
SNP	1100	4983	1	852612	A
SNP	1101	4984	1	852621	G
SNP	1102	4985	1	852627	T
SNP	1103	4986	1	852630	C
SNP	1104	4987	1	852633	C
SNP	1105	4988	1	852639	G
SNP	1106	4989	1	852648	G
SNP	1107	4990	1	852651	C
SNP	1108	4991	1	852666	T
SNP	1109	4992	1	852669	G
SNP	1110	4993	1	852672	T
SNP	1111	4994	1	852675	A
SNP	1112	4995	1	852681	A
SNP	1113	4996	1	852684	T
SNP	1114	4997	1	852690	G
SNP	1115	4998	1	852705	G
SNP	1116	4999	1	852722	A
SNP	1117	5000	1	852731	T
SNP	1118	5001	1	852741	G
SNP	1119	5002	1	852770	C
SNP	1120	5003	1	852774	C
SNP	1121	5004	1	852783	T
SNP	1122	5005	1	852789	T
SNP	1123	5006	1	852803	C
INS	1124	5007	1	852807	T
SNP	1125	5008	1	852809	C
DEL	1126	5009,5010	1	852821	2	repeat_length=1	repeat_new_copies=5	repeat_ref_copies=7	repeat_seq=T
SNP	1127	5011	1	852829	T
SNP	1128	5012	1	852837	C
SNP	1129	5013	1	852842	C
SNP	1130	5014	1	852857	C
SNP	1131	5015	1	852863	G
SNP	1132	5016	1	852871	C
SNP	1133	5017	1	852884	G
SNP	1134	5018	1	852890	G
SNP	1135	5019	1	852932	T
SNP	1136	5020	1	852935	G
SNP	1137	5021	1	852941	C
SNP	1138	5022	1	852946	C
SNP	1139	5023	1	852958	C
SUB	1140	5024,5025	1	852970	2	TC
SNP	1141	5026	1	852989	T
SNP	1142	5027	1	853007	C
SNP	1143	5028	1	853013	T
SNP	1144	5029	1	853022	A
SNP	1145	5030	1	853040	A
SNP	1146	5031	1	853043	A
SNP	1147	5032	1	853045	T
SNP	1148	5033	1	853061	C
SNP	1149	5034	1	853063	T
SNP	1150	5035	1	853067	A
SNP	1151	5036	1	853073	T
SNP	1152	5037	1	853076	C
SNP	1153	5038	1	853079	T
SNP	1154	5039	1	853085	A
SNP	1155	5040	1	853091	G
SNP	1156	5041	1	853097	T
SNP	1157	5042	1	853100	T
SNP	1158	5043	1	853103	T
SNP	1159	5044	1	853109	G
SNP	1160	5045	1	853112	A
SNP	1161	5046	1	853124	C
SNP	1162	5047	1	853133	T
SNP	1163	5048	1	853139	G
SNP	1164	5049	1	853148	A
SNP	1165	5050	1	853154	G
SNP	1166	5051	1	853157	T
SNP	1167	5052	1	853175	G
SNP	1168	5053	1	853181	A
SNP	1169	5054	1	853190	A
SNP	1170	5055	1	853238	A
SNP	1171	5056	1	853244	A
SNP	1172	5057	1	853261	G
SNP	1173	5058	1	853273	T
SNP	1174	5059	1	853281	C
SNP	1175	5060	1	853298	G
SNP	1176	5061	1	853322	G
SNP	1177	5062	1	853338	C
SNP	1178	5063	1	853382	C
SNP	1179	5064	1	853451	G
SNP	1180	5065	1	853508	T
SNP	1181	5066	1	853550	T
SNP	1182	5067	1	853602	A
SNP	1183	5068	1	853611	C
SNP	1184	5069	1	853658	C
SNP	1185	5070	1	853671	C
SNP	1186	5071	1	853677	T
SNP	1187	5072	1	853686	T
SNP	1188	5073	1	853701	C
SNP	1189	5074	1	853734	C
SNP	1190	5075	1	853739	C
SNP	1191	5076	1	853742	G
SNP	1192	5077	1	853770	A
SNP	1193	5078	1	853773	G
SNP	1194	5079	1	853779	T
SNP	1195	5080	1	853791	A
SNP	1196	5081	1	853800	T
SNP	1197	5082	1	853802	G
SNP	1198	5083	1	853809	T
SNP	1199	5084	1	853811	C
SNP	1200	5085	1	853839	C
SNP	1201	5086	1	853845	C
SNP	1202	5087	1	853848	C
SNP	1203	5088	1	853857	G
SNP	1204	5089	1	853863	C
SNP	1205	5090	1	853866	G
SNP	1206	5091	1	853899	C
SNP	1207	5092	1	853908	G
SNP	1208	5093	1	853915	A
SNP	1209	5094	1	853935	G
SNP	1210	5095	1	853938	C
SNP	1211	5096	1	853944	C
SNP	1212	5097	1	853947	A
SNP	1213	5098	1	853950	T
SUB	1214	5099,5100	1	853958	2	CC
SNP	1215	5101	1	853962	T
SNP	1216	5102	1	853965	C
SNP	1217	5103	1	853973	A
SNP	1218	5104	1	853998	A
SNP	1219	5105	1	854001	T
SNP	1220	5106	1	854031	G
SNP	1221	5107	1	854033	A
SNP	1222	5108	1	854037	T
SUB	1223	5109,5110	1	854057	2	TT
SNP	1224	5111	1	854061	T
SNP	1225	5112	1	854067	A
SNP	1226	5113	1	854078	C
SNP	1227	5114	1	854115	G
SNP	1228	5115	1	854121	A
SNP	1229	5116	1	854129	T
SNP	1230	5117	1	854134	A
SNP	1231	5118	1	854138	G
SNP	1232	5119	1	854151	A
SNP	1233	5120	1	854157	C
SUB	1234	5121,5122	1	854160	2	GC
SNP	1235	5123	1	854166	T
SNP	1236	5124	1	854171	C
SNP	1237	5125	1	854175	A
SUB	1238	5126,5127	1	854180	2	GT
SNP	1239	5128	1	854214	A
SNP	1240	5129	1	854217	C
SNP	1241	5130	1	854219	T
SNP	1242	5131	1	854226	A
SUB	1243	5132,5133	1	854228	2	CG
SNP	1244	5134	1	854238	G
SNP	1245	5135	1	854244	C
SNP	1246	5136	1	854250	C
SNP	1247	5137	1	854253	C
SNP	1248	5138	1	854271	C
SNP	1249	5139	1	854277	T
SUB	1250	5140,5141	1	854281	2	CC
SNP	1251	5142	1	854286	G
SNP	1252	5143	1	854291	T
SNP	1253	5144	1	854295	A
SNP	1254	5145	1	854299	T
SUB	1255	5146,5147	1	854302	2	CT
SNP	1256	5148	1	854333	T
SNP	1257	5149	1	854337	T
SNP	1258	5150	1	854340	C
SUB	1259	5151,5152	1	854345	2	GC
SNP	1260	5153	1	854356	C
SNP	1261	5154	1	854361	A
SUB	1262	5155,5156,5157	1	854373	3	CAA
SNP	1263	5158	1	854379	T
SUB	1264	5159,5160	1	854387	2	AC
SNP	1265	5161	1	854390	C
SNP	1266	5162	1	854400	G
SUB	1267	5163,5164	1	854408	2	AT
SNP	1268	5165	1	854418	C
SNP	1269	5166	1	854420	G
SNP	1270	5167	1	854427	C
SNP	1271	5168	1	854433	T
SNP	1272	5169	1	854465	A
SNP	1273	5170	1	854483	C
SNP	1274	5171	1	854489	A
SNP	1275	5172	1	854564	C
SNP	1276	5173	1	854588	C
SNP	1277	5174	1	854597	T
SNP	1278	5175	1	854603	G
SNP	1279	5176	1	854621	G
SNP	1280	5177	1	854651	T
SNP	1281	5178	1	854669	C
SNP	1282	5179	1	854678	G
SNP	1283	5180	1	854690	A
SNP	1284	5181	1	854702	C
SNP	1285	5182	1	854714	A
SUB	1286	5183,5184	1	854720	2	GT
SNP	1287	5185	1	854726	A
SNP	1288	5186	1	854729	A
SNP	1289	5187	1	854750	A
SNP	1290	5188	1	854753	G
SNP	1291	5189	1	854756	A
SNP	1292	5190	1	854759	C
SNP	1293	5191	1	854786	A
SNP	1294	5192	1	854789	G
SNP	1295	5193	1	854800	T
SNP	1296	5194	1	854802	G
SNP	1297	5195	1	854804	G
SNP	1298	5196	1	854807	G
SNP	1299	5197	1	854813	C
SNP	1300	5198	1	854819	A
SUB	1301	5199,5200	1	854821	2	AG
SUB	1302	5201,5202	1	854824	2	GG
SUB	1303	5203,5204	1	854828	2	TC
SNP	1304	5205	1	854834	A
SNP	1305	5206	1	854840	T
SNP	1306	5207	1	854843	G
SNP	1307	5208	1	854852	G
SNP	1308	5209	1	854864	T
SNP	1309	5210	1	854867	T
SNP	1310	5211	1	854882	A
SNP	1311	5212	1	854888	C
SNP	1312	5213	1	854894	C
SUB	1313	5214,5215	1	854906	2	TA
SNP	1314	5216	1	854909	G
SUB	1315	5217,5218	1	854911	2	TA
SNP	1316	5219	1	854921	T
SNP	1317	5220	1	854924	A
SNP	1318	5221	1	854948	T
SNP	1319	5222	1	855047	G
SNP	1320	5223	1	855116	A
SUB	1321	5224,5225	1	855121	2	CT
SNP	1322	5226	1	855129	T
SNP	1323	5227	1	855169	C
SNP	1324	5228	1	855183	T
SNP	1325	5229	1	855203	C
SNP	1326	5230	1	855211	T
SNP	1327	5231	1	855245	A
SNP	1328	5232	1	855278	T
SNP	1329	5233	1	855281	T
SNP	1330	5234	1	855293	A
SNP	1331	5235	1	855308	T
SUB	1332	5236,5237,5238	1	855316	3	GGC
SNP	1333	5239	1	855323	C
SNP	1334	5240	1	855340	A
SUB	1335	5241,5242	1	855351	2	AC
SNP	1336	5243	1	855357	T
SNP	1337	5244	1	855367	A
SNP	1338	5245	1	855388	A
SNP	1339	5246	1	855392	G
SNP	1340	5247	1	855397	G
SNP	1341	5248	1	855405	A
SUB	1342	5249,5250	1	855408	2	AA
SNP	1343	5251	1	855412	A
SNP	1344	5252	1	855415	G
SNP	1345	5253	1	855420	C
SNP	1346	5254	1	855432	T
SNP	1347	5255	1	855439	G
SNP	1348	5256	1	855442	A
SNP	1349	5257	1	855478	A
SNP	1350	5258	1	855484	T
SNP	1351	5259	1	855499	C
SNP	1352	5260	1	855502	A
SNP	1353	5261	1	855511	A
SNP	1354	5262	1	855517	T
SUB	1355	5263,5264	1	855519	2	TT
SNP	1356	5265	1	855526	A
SNP	1357	5266	1	855535	G
SUB	1358	5267,5268	1	855546	2	TT
SNP	1359	5269	1	855565	G
SNP	1360	5270	1	855568	T
SNP	1361	5271	1	855571	T
SNP	1362	5272	1	855574	G
SNP	1363	5273	1	855577	G
SNP	1364	5274	1	855580	A
SNP	1365	5275	1	855589	A
SNP	1366	5276	1	855592	T
SUB	1367	5277,5278	1	855594	2	CA
SNP	1368	5279	1	855613	T
SNP	1369	5280	1	855616	C
SNP	1370	5281	1	855628	C
SNP	1371	5282	1	855652	C
SNP	1372	5283	1	855658	T
SNP	1373	5284	1	855673	C
SNP	1374	5285	1	855680	G
SNP	1375	5286	1	855718	A
SNP	1376	5287	1	855721	G
SNP	1377	5288	1	855727	C
SNP	1378	5289	1	855739	C
SNP	1379	5290	1	855766	A
SNP	1380	5291	1	855769	T
SNP	1381	5292	1	855772	G
SNP	1382	5293	1	855796	T
SNP	1383	5294	1	855798	G
SNP	1384	5295	1	855814	A
SNP	1385	5296	1	855817	C
SNP	1386	5297	1	855829	C
SNP	1387	5298	1	855859	T
SNP	1388	5299	1	855865	A
SNP	1389	5300	1	855883	T
SUB	1390	5301,5302	1	855897	2	AT
SNP	1391	5303	1	855901	A
SNP	1392	5304	1	855915	A
SNP	1393	5305	1	855946	A
SNP	1394	5306	1	855964	G
SUB	1395	5307,5308	1	855966	2	GA
SNP	1396	5309	1	855979	G
SNP	1397	5310	1	856012	T
SNP	1398	5311	1	856015	A
SNP	1399	5312	1	856027	G
SNP	1400	5313	1	856036	A
SNP	1401	5314	1	856042	T
SNP	1402	5315	1	856048	A
SNP	1403	5316	1	856054	G
SNP	1404	5317	1	856066	G
SUB	1405	5318,5319	1	856087	2	GC
SNP	1406	5320	1	856097	C
SNP	1407	5321	1	856108	C
SNP	1408	5322	1	856117	G
SNP	1409	5323	1	856129	A
SNP	1410	5324	1	856138	C
SNP	1411	5325	1	856153	T
SNP	1412	5326	1	856171	A
SNP	1413	5327	1	856177	G
SNP	1414	5328	1	856219	A
SNP	1415	5329	1	856276	G
SNP	1416	5330	1	856306	G
SNP	1417	5331	1	856324	A
SNP	1418	5332	1	856345	G
SNP	1419	5333	1	856371	C
SNP	1420	5334	1	856378	C
SNP	1421	5335	1	856384	C
SNP	1422	5336	1	856387	A
SNP	1423	5337	1	856429	C
SNP	1424	5338	1	856432	T
SNP	1425	5339	1	856434	C
SNP	1426	5340	1	856440	A
SNP	1427	5341	1	856444	C
SUB	1428	5342,5343,5344,5345,5346	1	856455	5	TGTTA
SNP	1429	5347	1	856473	T
SNP	1430	5348	1	856477	A
SNP	1431	5349	1	856504	T
SNP	1432	5350	1	856506	A
SNP	1433	5351	1	856545	C
SNP	1434	5352	1	856555	G
SNP	1435	5353	1	856558	C
SNP	1436	5354	1	856560	A
SNP	1437	5355	1	856608	A
SNP	1438	5356	1	856615	C
SNP	1439	5357	1	856619	T
SNP	1440	5358	1	856636	T
SNP	1441	5359	1	856646	G
SNP	1442	5360	1	856658	T
SNP	1443	5361	1	856670	T
SNP	1444	5362	1	856714	G
SNP	1445	5363	1	856733	C
SNP	1446	5364	1	856754	G
SNP	1447	5365	1	856757	C
SUB	1448	5366,5367	1	856762	2	CA
SNP	1449	5368	1	856778	A
SNP	1450	5369	1	856786	C
SNP	1451	5370	1	856788	A
SNP	1452	5371	1	856790	A
SNP	1453	5372	1	856793	A
SNP	1454	5373	1	856798	T
SNP	1455	5374	1	856817	G
SNP	1456	5375	1	856823	G
SNP	1457	5376	1	856829	G
SNP	1458	5377	1	856838	C
SNP	1459	5378	1	856841	A
SNP	1460	5379	1	856858	C
SNP	1461	5380	1	856862	T
SUB	1462	5381,5382	1	856864	2	AC
SNP	1463	5383	1	856883	T
SNP	1464	5384	1	856892	G
SNP	1465	5385	1	856913	A
SUB	1466	5386,5387	1	856915	2	TG
SNP	1467	5388	1	856919	A
SNP	1468	5389	1	856922	A
SNP	1469	5390	1	856928	A
SNP	1470	5391	1	856940	A
SNP	1471	5392	1	856946	T
SNP	1472	5393	1	856961	A
SNP	1473	5394	1	856967	G
SNP	1474	5395	1	856971	T
SNP	1475	5396	1	856995	T
SNP	1476	5397	1	857017	T
SNP	1477	5398	1	857033	T
SNP	1478	5399	1	857036	G
SNP	1479	5400	1	857039	G
SNP	1480	5401	1	857087	T
SNP	1481	5402	1	857090	G
SUB	1482	5403,5404	1	857107	2	AG
SNP	1483	5405	1	857123	A
SNP	1484	5406	1	857132	A
SNP	1485	5407	1	857137	C
SNP	1486	5408	1	857189	C
SNP	1487	5409	1	857192	G
SNP	1488	5410	1	857204	A
SNP	1489	5411	1	857222	C
SNP	1490	5412	1	857240	T
SNP	1491	5413	1	857288	G
SNP	1492	5414	1	857291	C
SNP	1493	5415	1	857330	A
SNP	1494	5416	1	857336	T
SNP	1495	5417	1	857343	A
SNP	1496	5418	1	857378	T
SNP	1497	5419	1	857381	G
SNP	1498	5420	1	857405	A
SNP	1499	5421	1	857438	T
SNP	1500	5422	1	857485	C
SNP	1501	5423	1	857516	A
SNP	1502	5424	1	857522	T
SNP	1503	5425	1	857545	T
SNP	1504	5426	1	857555	A
SNP	1505	5427	1	857576	C
SNP	1506	5428	1	857585	C
SNP	1507	5429	1	857591	A
SNP	1508	5430	1	857643	G
SNP	1509	5431	1	857663	A
SNP	1510	5432	1	857681	T
SNP	1511	5433	1	857686	C
SNP	1512	5434	1	857696	A
SNP	1513	5435	1	857699	T
SNP	1514	5436	1	857852	C
SNP	1515	5437	1	857859	C
SUB	1516	5438,5439	1	857861	2	CT
SNP	1517	5440	1	857898	A
SNP	1518	5441	1	857933	G
SUB	1519	5442,5443	1	857944	2	CG
SNP	1520	5444	1	857977	C
SNP	1521	5445	1	858014	G
SNP	1522	5446	1	858026	T
SNP	1523	5447	1	858056	G
SNP	1524	5448	1	858059	A
SNP	1525	5449	1	858065	G
SNP	1526	5450	1	858092	A
SNP	1527	5451	1	858115	T
SNP	1528	5452	1	858175	C
SNP	1529	5453	1	858186	T
SNP	1530	5454	1	858201	T
SNP	1531	5455	1	858204	G
SUB	1532	5456,5457	1	858209	2	AA
SNP	1533	5458	1	858213	A
SNP	1534	5459	1	858242	A
SNP	1535	5460	1	858277	C
SNP	1536	5461	1	858301	C
SNP	1537	5462	1	858378	C
SNP	1538	5463	1	858421	T
SNP	1539	5464	1	858461	T
SNP	1540	5465	1	858577	T
SNP	1541	5466	1	858589	C
SNP	1542	5467	1	858627	C
SNP	1543	5468	1	858631	C
SNP	1544	5469	1	858649	A
SNP	1545	5470	1	858652	T
SNP	1546	5471	1	858655	G
SNP	1547	5472	1	858666	A
SNP	1548	5473	1	858709	G
SNP	1549	5474	1	858712	A
SNP	1550	5475	1	858724	C
SNP	1551	5476	1	858745	T
SNP	1552	5477	1	858757	C
SNP	1553	5478	1	858767	T
SNP	1554	5479	1	858772	T
SNP	1555	5480	1	858775	T
SNP	1556	5481	1	858793	A
SNP	1557	5482	1	858796	T
SNP	1558	5483	1	858823	T
SNP	1559	5484	1	858856	C
SNP	1560	5485	1	858880	G
SNP	1561	5486	1	858892	C
SNP	1562	5487	1	858907	T
SNP	1563	5488	1	858910	G
SNP	1564	5489	1	858997	A
SNP	1565	5490	1	859009	A
SNP	1566	5491	1	859015	C
SNP	1567	5492	1	859030	C
SNP	1568	5493	1	859075	G
SNP	1569	5494	1	859078	T
SNP	1570	5495	1	859099	A
SNP	1571	5496	1	859114	G
SNP	1572	5497	1	859129	C
SNP	1573	5498	1	859132	C
SUB	1574	5499,5500	1	859137	2	CA
SNP	1575	5501	1	859144	C
SNP	1576	5502	1	859150	C
SNP	1577	5503	1	859170	G
SUB	1578	5504,5505	1	859174	2	GT
SNP	1579	5506	1	859201	A
SNP	1580	5507	1	859207	T
SNP	1581	5508	1	859225	T
SNP	1582	5509	1	859231	A
SNP	1583	5510	1	859237	A
SNP	1584	5511	1	859240	T
SNP	1585	5512	1	859252	G
SNP	1586	5513	1	859258	A
SNP	1587	5514	1	859267	C
SNP	1588	5515	1	859270	C
SNP	1589	5516	1	859291	A
SNP	1590	5517	1	859295	T
SNP	1591	5518	1	859300	C
SNP	1592	5519	1	859303	C
SNP	1593	5520	1	859318	A
SNP	1594	5521	1	859327	G
SNP	1595	5522	1	859333	G
SNP	1596	5523	1	859354	G
SNP	1597	5524	1	859360	A
SNP	1598	5525	1	859363	C
SNP	1599	5526	1	859366	C
SNP	1600	5527	1	859369	A
SNP	1601	5528	1	859372	C
SNP	1602	5529	1	859579	T
SNP	1603	5530	1	859600	C
SNP	1604	5531	1	859704	A
SNP	1605	5532	1	859715	G
SNP	1606	5533	1	859724	C
SNP	1607	5534	1	859754	A
SNP	1608	5535	1	859777	A
SNP	1609	5536	1	859790	G
SNP	1610	5537	1	859797	A
SNP	1611	5538	1	859801	C
SNP	1612	5539	1	859803	C
SNP	1613	5540	1	859805	A
DEL	1614	5541	1	859812	1
SNP	1615	5542	1	859813	G
SNP	1616	5543	1	859816	A
SUB	1617	5544,5545	1	859818	1	AC
SUB	1618	5546,5547,5548	1	859821	3	AAC
SNP	1619	5549	1	859826	T
SNP	1620	5550	1	859829	C
SNP	1621	5551	1	859834	T
DEL	1622	5552	1	859840	1
SNP	1623	5553	1	859841	T
DEL	1624	5554,5555	1	859844	2
SNP	1625	5556	1	859855	C
SUB	1626	5557,5558	1	859857	2	AC
SNP	1627	5559	1	859864	C
SNP	1628	5560	1	859868	A
SNP	1629	5561	1	859871	C
SNP	1630	5562	1	859873	G
SNP	1631	5563	1	859882	G
SNP	1632	5564	1	859888	C
SNP	1633	5565	1	859890	G
SNP	1634	5566	1	859892	C
SNP	1635	5567	1	859903	C
SNP	1636	5568	1	859931	A
SNP	1637	5569	1	859937	G
SUB	1638	5570,5571	1	859949	2	GG
SNP	1639	5572	1	859955	C
SNP	1640	5573	1	859964	A
SNP	1641	5574	1	859966	C
SUB	1642	5575,5576	1	859969	2	AT
SNP	1643	5577	1	859982	G
SNP	1644	5578	1	860012	G
SNP	1645	5579	1	860019	C
SNP	1646	5580	1	860039	G
SNP	1647	5581	1	860049	C
SNP	1648	5582	1	860051	T
SUB	1649	5583,5584	1	860056	2	TC
SNP	1650	5585	1	860059	A
SNP	1651	5586	1	860066	A
SNP	1652	5587	1	860084	A
SNP	1653	5588	1	860207	C
SNP	1654	5589	1	860246	G
SNP	1655	5590	1	860279	C
SNP	1656	5591	1	860294	T
SNP	1657	5592	1	860321	C
SNP	1658	5593	1	860332	T
SUB	1659	5594,5595	1	860343	2	GA
INS	1660	8075	1	860360	ATT	repeat_length=3	repeat_new_copies=3	repeat_ref_copies=2	repeat_seq=ATT
SNP	1661	5596	1	860389	C
SNP	1662	5597	1	860500	T
SNP	1663	5598	1	860596	T
SNP	1664	5599	1	860672	C
SNP	1665	5600	1	860689	A
SNP	1666	5601	1	860737	G
SNP	1667	5602	1	860753	C
SNP	1668	5603	1	860794	C
SNP	1669	5604	1	860846	A
SNP	1670	5605	1	860848	T
SNP	1671	5606	1	860863	G
SNP	1672	5607	1	860868	A
SNP	1673	5608	1	860884	T
SUB	1674	5609,5610	1	860895	2	AC
SUB	1675	5611,5612	1	860903	2	CG
SNP	1676	5613	1	860908	G
SNP	1677	5614	1	860917	T
SUB	1678	5615,5616	1	860926	2	CG
DEL	1679	5617	1	860950	1	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=7	repeat_seq=T
SNP	1680	5618	1	860990	T
SUB	1681	5619,5620	1	861026	2	CT
SNP	1682	5621	1	861049	C
SNP	1683	5622	1	861095	A
SNP	1684	5629	1	861382	A
SNP	1685	5630	1	861394	A
SNP	1686	5631	1	861426	C
SNP	1687	5632	1	861428	C
SNP	1688	5633	1	861448	A
SNP	1689	5634	1	861450	C
SNP	1690	5635	1	861469	A
SNP	1691	5636	1	861473	G
SNP	1692	5637	1	861478	A
SNP	1693	5638	1	861553	G
SNP	1694	5639	1	861571	G
SUB	1695	5640,5641	1	861593	2	CC
SNP	1696	5642	1	861597	T
INS	1697	5643	1	861631	T	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=T
SNP	1698	5644	1	861650	T
SNP	1699	5645	1	861660	C
INS	1700	5646	1	861678	C
SNP	1701	5647	1	861732	T
DEL	1702	5648	1	861781	1	repeat_length=1	repeat_new_copies=5	repeat_ref_copies=6	repeat_seq=A
SNP	1703	5649	1	861782	C
SNP	1704	5650	1	861809	A
INS	1705	5651	1	861828	T	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=5	repeat_seq=T
SNP	1706	5652	1	861830	T
SNP	1707	5653	1	861843	C
SNP	1708	5654	1	861887	T
INS	1709	5655	1	861899	A	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=5	repeat_seq=A
DEL	1710	5656	1	861908	1
SNP	1711	5657	1	861930	A
SNP	1712	5658	1	861970	C
SNP	1713	5659	1	861980	C
SNP	1714	5660	1	861995	A
SNP	1715	5661	1	862008	G
SNP	1716	5662	1	862016	G
SNP	1717	5663	1	862019	A
SNP	1718	5664	1	862036	C
SNP	1719	5665	1	862040	T
SNP	1720	5666	1	862046	A
SNP	1721	5667	1	862061	C
SNP	1722	5668	1	862071	G
DEL	1723	5669	1	862091	1
SUB	1724	5670,5671	1	862112	2	GA
SNP	1725	5672	1	862115	C
SNP	1726	5673	1	862124	G
SUB	1727	5674,5675	1	862129	2	CT
SNP	1728	5676	1	862135	G
SNP	1729	5677	1	862140	C
SNP	1730	5678	1	862147	C
SNP	1731	5679	1	862154	C
SNP	1732	5680	1	862158	G
SNP	1733	5681	1	862175	A
SNP	1734	5682	1	862180	T
SNP	1735	5683	1	862186	G
SUB	1736	5684,5685	1	862189	2	CG
SNP	1737	5686	1	862200	G
SNP	1738	5687	1	862207	T
SNP	1739	5688	1	862217	A
SNP	1740	5689	1	862227	T
SNP	1741	5690	1	862245	A
SNP	1742	5691	1	862270	A
SNP	1743	5692	1	862299	G
SNP	1744	5693	1	862301	A
SNP	1745	5694	1	862311	G
SNP	1746	5695	1	862344	T
SUB	1747	5696,5697	1	862346	2	AT
SNP	1748	5698	1	862353	G
SNP	1749	5699	1	862356	A
SNP	1750	5700	1	862365	G
SNP	1751	5701	1	862377	C
SNP	1752	5702	1	862382	T
SNP	1753	5703	1	862404	C
SNP	1754	5704	1	862473	A
SNP	1755	5705	1	862478	C
SNP	1756	5706	1	862480	T
SNP	1757	5707	1	862503	T
SNP	1758	5708	1	862524	G
SNP	1759	5709	1	862527	T
SNP	1760	5710	1	862596	C
SNP	1761	5711	1	862642	T
SNP	1762	5712	1	862708	G
SNP	1763	5713	1	862715	A
SNP	1764	5714	1	862717	T
INS	1765	5715	1	862722	A
SNP	1766	5716	1	862736	A
SNP	1767	5717	1	862766	T
DEL	1768	5718,5719,5720	1	862773	3
DEL	1769	5721,5722	1	862777	2
DEL	1770	5723,5724,5725,5726,5727	1	862789	5	repeat_length=5	repeat_new_copies=1	repeat_ref_copies=2	repeat_seq=CATAT
SNP	1771	5728	1	862796	G
SNP	1772	5729	1	862801	T
SNP	1773	5730	1	862811	A
SNP	1774	5731	1	862813	G
SNP	1775	5732	1	862834	G
SNP	1776	5733	1	862836	A
SNP	1777	5734	1	862845	A
INS	1778	5735	1	862860	G
SNP	1779	5736	1	862892	A
SNP	1780	5737	1	862921	T
SNP	1781	5738	1	862924	C
SNP	1782	5739	1	862951	A
SUB	1783	5740,5741	1	862954	2	TG
INS	1784	5742	1	862963	G
SUB	1785	5743,5744	1	862967	2	C
SNP	1786	5745	1	862987	T
SNP	1787	5746	1	862997	A
SNP	1788	5747	1	863013	C
SNP	1789	5748	1	863047	G
SNP	1790	5749	1	863065	A
SNP	1791	5750	1	863102	T
SNP	1792	5751	1	863119	G
SUB	1793	5752,5753	1	863143	2	CG
SNP	1794	5754	1	863155	T
SUB	1795	5755,5756	1	863170	2	CT
SNP	1796	5757	1	863201	G
SNP	1797	5758	1	863219	C
SNP	1798	5759	1	863221	A
SNP	1799	5760	1	863230	C
SNP	1800	5761	1	863245	G
SNP	1801	5762	1	863341	T
SNP	1802	5763	1	863353	C
SNP	1803	5764	1	863365	T
SNP	1804	5765	1	863374	T
SNP	1805	5766	1	863389	T
SNP	1806	5767	1	863401	C
SNP	1807	5768	1	863414	A
SNP	1808	5769	1	863419	G
SNP	1809	5770	1	863443	T
SNP	1810	5771	1	863503	T
SNP	1811	5772	1	863533	T
SNP	1812	5773	1	863542	T
SNP	1813	5774	1	863547	C
SNP	1814	5775	1	863560	A
SUB	1815	5776,5777	1	863574	2	CT
SNP	1816	5778	1	863588	T
SNP	1817	5779	1	863596	T
SUB	1818	5780,5781	1	863599	2	CA
SNP	1819	5782	1	863605	T
SNP	1820	5783	1	863625	A
SNP	1821	5784	1	863636	C
SNP	1822	5785	1	863638	T
SNP	1823	5786	1	863662	A
SNP	1824	5787	1	863674	C
SUB	1825	5788,5789	1	863679	2	CA
SNP	1826	5790	1	863692	T
SNP	1827	5791	1	863698	G
SNP	1828	5792	1	863700	C
SNP	1829	5793	1	863704	C
SNP	1830	5794	1	863755	T
SNP	1831	5795	1	863770	T
SNP	1832	5796	1	863773	G
SNP	1833	5797	1	863791	T
SNP	1834	5798	1	863797	C
SNP	1835	5799	1	863813	C
SNP	1836	5800	1	863829	T
SNP	1837	5801	1	863851	T
SUB	1838	5802,5803	1	863868	2	TG
SNP	1839	5804	1	863875	T
SNP	1840	5805	1	863878	T
SNP	1841	5806	1	863881	T
SNP	1842	5807	1	863888	T
SNP	1843	5808	1	863900	G
SUB	1844	5809,5810	1	863958	2	AA
SNP	1845	5811	1	863966	G
SNP	1846	5812	1	863971	T
SNP	1847	5813	1	863984	T
SNP	1848	5814	1	863987	C
SNP	1849	5815	1	863993	C
SNP	1850	5816	1	863995	C
SNP	1851	5817	1	864001	G
SNP	1852	5818	1	864004	C
SNP	1853	5819	1	864012	G
SNP	1854	5820	1	864021	C
SNP	1855	5821	1	864036	T
SNP	1856	5822	1	864040	T
SNP	1857	5823	1	864059	A
SNP	1858	5824	1	864088	C
SUB	1859	5825,5826	1	864090	2	GT
SNP	1860	5827	1	864094	A
SNP	1861	5828	1	864121	T
SNP	1862	5829	1	864130	C
SNP	1863	5830	1	864145	A
SNP	1864	5831	1	864160	G
SNP	1865	5832	1	864169	G
SUB	1866	5833,5834	1	864171	2	AA
SNP	1867	5835	1	864179	C
SNP	1868	5836	1	864184	T
SNP	1869	5837	1	864201	T
SNP	1870	5838	1	864220	T
SNP	1871	5839	1	864236	G
SNP	1872	5840	1	864240	C
SUB	1873	5841,5842	1	864243	2	CG
SNP	1874	5843	1	864253	G
SUB	1875	5844,5845	1	864259	2	AT
SNP	1876	5846	1	864262	G
SNP	1877	5847	1	864277	T
SNP	1878	5848	1	864279	G
SNP	1879	5849	1	864284	A
SNP	1880	5850	1	864298	G
SUB	1881	5851,5852	1	864315	2	TA
SNP	1882	5853	1	864331	T
SNP	1883	5854	1	864346	C
SNP	1884	5855	1	864366	C
SUB	1885	5856,5857	1	864373	2	TG
SNP	1886	5858	1	864376	C
SNP	1887	5859	1	864378	T
SNP	1888	5860	1	864388	C
SNP	1889	5861	1	864400	C
SNP	1890	5862	1	864403	G
SNP	1891	5863	1	864415	T
SNP	1892	5864	1	864421	G
SNP	1893	5865	1	864424	T
SUB	1894	5866,5867	1	864454	2	AG
SNP	1895	5868	1	864460	C
SNP	1896	5869	1	864475	T
SNP	1897	5870	1	864500	C
SNP	1898	5871	1	864541	C
SNP	1899	5872	1	864575	C
SNP	1900	5873	1	864584	T
SNP	1901	5874	1	864589	T
SNP	1902	5875	1	864592	C
SNP	1903	5876	1	864595	T
SNP	1904	5877	1	864605	G
SNP	1905	5878	1	864626	A
SNP	1906	5879	1	864633	G
SNP	1907	5880	1	864644	A
SNP	1908	5881	1	864676	T
SNP	1909	5882	1	864691	C
SNP	1910	5883	1	864727	A
SNP	1911	5884	1	864746	T
SNP	1912	5885	1	864751	A
SNP	1913	5886	1	864754	A
SNP	1914	5887	1	864759	G
SUB	1915	5888,5889	1	864763	2	AA
SNP	1916	5890	1	864767	C
SNP	1917	5891	1	864775	C
SNP	1918	5892	1	864796	A
SUB	1919	5893,5894,5895	1	864799	3	AGG
SUB	1920	5896,5897	1	864807	2	AG
SNP	1921	5898	1	864811	T
SNP	1922	5899	1	864814	T
SNP	1923	5900	1	864827	C
SNP	1924	5901	1	864835	A
SNP	1925	5902	1	864850	C
SUB	1926	5903,5904	1	864852	2	TG
SNP	1927	5905	1	864856	C
SNP	1928	5906	1	864859	C
SUB	1929	5907,5908	1	864922	2	TT
SNP	1930	5909	1	864949	G
SNP	1931	5910	1	864967	A
SNP	1932	5911	1	864970	G
DEL	1933	5912	1	864993	1
INS	1934	5913	1	864995	A
SNP	1935	5914	1	865021	T
SNP	1936	5915	1	865051	A
SNP	1937	5916	1	865057	C
SNP	1938	5917	1	865103	A
SNP	1939	5918	1	865114	G
SNP	1940	5919	1	865135	G
SNP	1941	5920	1	865141	G
SNP	1942	5921	1	865147	T
SNP	1943	5922	1	865153	A
SNP	1944	5923	1	865161	A
SNP	1945	5924	1	865165	G
SNP	1946	5925	1	865182	G
SNP	1947	5926	1	865189	A
SNP	1948	5927	1	865204	C
SNP	1949	5928	1	865208	T
SNP	1950	5929	1	865219	A
SNP	1951	5930	1	865237	A
SNP	1952	5931	1	865245	C
SNP	1953	5932	1	865251	G
SNP	1954	5933	1	865277	G
SUB	1955	5934,5935	1	865282	2	CC
SNP	1956	5936	1	865289	G
SNP	1957	5937	1	865291	T
SNP	1958	5938	1	865318	A
SNP	1959	5939	1	865332	T
SNP	1960	5940	1	865361	G
SNP	1961	5941	1	865372	A
SNP	1962	5942	1	865374	A
SNP	1963	5943	1	865391	G
SNP	1964	5944	1	865405	G
SNP	1965	5945	1	865408	T
SNP	1966	5946	1	865424	A
SNP	1967	5947	1	865439	T
SUB	1968	5948,5949	1	865442	2	GC
SNP	1969	5950	1	865489	T
SNP	1970	5951	1	865509	A
INS	1971	5952	1	865521	T
SNP	1972	5953	1	865537	A
SNP	1973	5954	1	865542	A
SNP	1974	5955	1	865553	T
SNP	1975	5956	1	865586	C
SNP	1976	5957	1	865610	C
SNP	1977	5958	1	865613	T
SNP	1978	5959	1	865634	G
SNP	1979	5960	1	865643	G
SNP	1980	5961	1	865658	C
SNP	1981	5962	1	865661	C
SNP	1982	5963	1	865670	T
SNP	1983	5964	1	865679	A
SNP	1984	5965	1	865695	A
SNP	1985	5966	1	865717	A
SNP	1986	5967	1	865721	C
SNP	1987	5968	1	865779	C
SNP	1988	5969	1	865785	C
SNP	1989	5970	1	865817	T
SUB	1990	5971,5972	1	865821	2	CA
SNP	1991	5973	1	865829	A
SNP	1992	5974	1	865951	T
DEL	1993	5975	1	866012	1	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=7	repeat_seq=A
SNP	1994	5976	1	866053	G
SNP	1995	5977	1	866062	T
SNP	1996	5978	1	866115	T
SNP	1997	5979	1	866118	T
SNP	1998	5980	1	866136	T
SNP	1999	5981	1	866141	C
SNP	2000	5982	1	866207	T
SNP	2001	5983	1	866244	C
SNP	2002	5984	1	866286	T
SNP	2003	5985	1	866290	T
SUB	2004	5986,5987	1	866336	2	AA
SNP	2005	5988	1	866348	A
SNP	2006	5989	1	866356	G
SNP	2007	5990	1	866517	T
SNP	2008	5991	1	866610	G
SNP	2009	5992	1	866619	G
SNP	2010	5993	1	866808	C
SNP	2011	5994	1	867029	T
SNP	2012	5995	1	867050	C
SNP	2013	5996	1	867701	A
SNP	2014	5997	1	868829	T
SNP	2015	5998	1	872073	C
SNP	2016	5999	1	872558	G
SNP	2017	6000	1	872665	T
SNP	2018	6001	1	873298	T
INS	2019	6002	1	875491	T	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=T
SNP	2020	6003	1	879239	C
SNP	2021	6004	1	882984	C
SNP	2022	6005	1	884175	A
SNP	2023	6006	1	884189	G
SNP	2024	6007	1	884222	A
SNP	2025	6008	1	884678	T
SNP	2026	6009	1	884890	T
SNP	2027	6010	1	885369	C
SNP	2028	6011	1	888350	G
SNP	2029	6012	1	888872	T
SNP	2030	6015	1	892261	C
SNP	2031	6016	1	892432	G
SNP	2032	6017	1	892465	G
SNP	2033	6018	1	892662	T
INS	2034	8078	1	892680	GAGAACAAA	repeat_length=9	repeat_new_copies=2	repeat_ref_copies=1	repeat_seq=GAGAACAAA
SNP	2035	6019	1	894621	G
SNP	2036	6020	1	894704	G
SNP	2037	6021	1	894741	T
SNP	2038	6022	1	895001	T
SNP	2039	6023	1	895451	T
SNP	2040	6024	1	896967	G
SNP	2041	6025	1	897333	G
SNP	2042	6026	1	898170	T
SNP	2043	6027	1	898526	G
SNP	2044	6028	1	898850	A
SNP	2045	6029	1	900158	C
SNP	2046	6030	1	900240	C
SNP	2047	6031	1	901399	C
SNP	2048	6032	1	901747	A
SNP	2049	6033	1	902089	C
SNP	2050	6034	1	903288	G
SNP	2051	6035	1	904092	A
SNP	2052	6036	1	905496	C
SNP	2053	6037	1	905756	T
SNP	2054	6038	1	906358	T
SNP	2055	6039	1	906551	C
SNP	2056	6040	1	906972	A
SNP	2057	6041	1	908434	T
SNP	2058	6042	1	909515	C
SNP	2059	6045	1	910327	G
SNP	2060	6046	1	911500	T
SNP	2061	6047	1	912131	T
SNP	2062	6048	1	913622	A
SNP	2063	6049	1	915140	A
SNP	2064	6050	1	915721	T
SNP	2065	6051	1	916187	T
SNP	2066	6052	1	917299	C
SNP	2067	6053	1	917693	G
SNP	2068	6054	1	919069	C
SNP	2069	6055	1	919170	A
SNP	2070	6056	1	919382	T
SNP	2071	6057	1	921457	G
INS	2072	6058	1	921660	T
SNP	2073	6059	1	922977	G
SNP	2074	6060	1	923596	G
SNP	2075	6061	1	925915	G
SNP	2076	6062	1	926061	C
SNP	2077	6063	1	926112	A
SNP	2078	6064	1	926649	A
SNP	2079	6065	1	928701	T
SNP	2080	6066	1	928874	A
SNP	2081	6067	1	929634	A
SNP	2082	6068	1	930967	T
SNP	2083	6069	1	932475	C
DEL	2084	7962,8081	1	933434	1865
SNP	2085	6070	1	936603	A
SNP	2086	6071	1	937989	A
SNP	2087	6072	1	939545	A
SNP	2088	6073	1	940346	T
SNP	2089	6074	1	942155	C
SNP	2090	6075	1	944006	C
SNP	2091	6076	1	944205	C
SNP	2092	6077	1	944285	A
SNP	2093	6078	1	944810	A
SNP	2094	6079	1	945927	C
DEL	2095	6080	1	947180	1	repeat_length=1	repeat_new_copies=5	repeat_ref_copies=6	repeat_seq=C
SNP	2096	6081	1	948072	T
SNP	2097	6082	1	952307	A
SNP	2098	6083	1	953736	G
SNP	2099	6084	1	954782	T
SNP	2100	6085	1	955182	C
SNP	2101	6086	1	958335	T
SNP	2102	6087	1	958847	T
SNP	2103	6088	1	959506	G
SNP	2104	6089	1	959621	C
SNP	2105	6090	1	959718	C
INS	2106	6092	1	960544	C	repeat_length=1	repeat_new_copies=9	repeat_ref_copies=8	repeat_seq=C
SNP	2107	6093	1	960553	G
SNP	2108	6094	1	960932	C
SNP	2109	6095	1	964111	G
SNP	2110	6096	1	965339	G
SNP	2111	6097	1	966711	A
SNP	2112	6098	1	966911	A
SNP	2113	6099	1	968696	C
SNP	2114	6100	1	968751	T
SNP	2115	6101	1	969014	G
SNP	2116	6102	1	969839	G
SNP	2117	6103	1	970503	G
SNP	2118	6104	1	970518	A
INS	2119	8082	1	970771	GTACTTCGT
SNP	2120	6105	1	973580	A
SNP	2121	6106	1	973682	C
SNP	2122	6107	1	975280	C
SNP	2123	6108	1	975299	T
SNP	2124	6109	1	978939	G
SNP	2125	6110	1	981779	C
SNP	2126	6111	1	984960	A
SNP	2127	6112	1	985108	T
SNP	2128	6113	1	986276	T
SNP	2129	6114	1	987283	A
SNP	2130	6115	1	987623	C
SNP	2131	6116	1	989227	C
SNP	2132	6117	1	989994	T
SNP	2133	6118	1	992094	G
SNP	2134	6119	1	993935	C
SNP	2135	6120	1	996788	T
SNP	2136	6121	1	997229	G
SNP	2137	6122	1	997466	C
SNP	2138	6123	1	997611	C
SNP	2139	6124	1	997742	A
SNP	2140	6125	1	998480	G
SUB	2141	6143,6144	1	1000080	2	AG
SNP	2142	6145	1	1000083	T
SNP	2143	6146	1	1000090	G
SNP	2144	6147	1	1000094	C
SNP	2145	6148	1	1000096	G
SNP	2146	6149	1	1000099	T
SNP	2147	6150	1	1000105	T
SNP	2148	6151	1	1000118	A
SNP	2149	6152	1	1000127	G
SNP	2150	6153	1	1000134	C
SNP	2151	6154	1	1000155	A
SNP	2152	6155	1	1000187	C
SUB	2153	6156,6157	1	1000201	2	TT
SNP	2154	6158	1	1000216	T
SUB	2155	6159,6160	1	1000219	2	GG
SNP	2156	6161	1	1000236	T
SNP	2157	6162	1	1000241	G
DEL	2158	6163,6164,6165,6166,6167,6168	1	1000244	6
SUB	2159	6169,6170	1	1000251	2	G
SUB	2160	6171,6172	1	1000255	2	G
DEL	2161	6173,6174,6175,6176	1	1000262	4	repeat_length=2	repeat_new_copies=1	repeat_ref_copies=3	repeat_seq=CG
SNP	2162	6177	1	1000266	T
SNP	2163	6178	1	1000298	T
SNP	2164	6179	1	1000307	A
SUB	2165	6180,6181	1	1000317	2	CT
SNP	2166	6182	1	1000332	A
SNP	2167	6183	1	1000339	G
SNP	2168	6184	1	1000347	A
SNP	2169	6185	1	1000350	G
SNP	2170	6186	1	1000359	T
SNP	2171	6187	1	1000368	A
SNP	2172	6188	1	1000389	G
SNP	2173	6189	1	1000395	C
SNP	2174	6190	1	1000407	C
SNP	2175	6191	1	1000422	G
SNP	2176	6192	1	1000452	A
SNP	2177	6193	1	1000463	G
SNP	2178	6194	1	1000466	T
SNP	2179	6195	1	1000470	G
SNP	2180	6196	1	1000517	G
SNP	2181	6197	1	1000543	G
SNP	2182	6198	1	1000553	G
SNP	2183	6199	1	1000581	C
SNP	2184	6200	1	1000604	C
SNP	2185	6201	1	1000613	C
SNP	2186	6202	1	1000622	T
SUB	2187	6203,6204	1	1000630	2	GA
SNP	2188	6205	1	1000637	C
SNP	2189	6206	1	1000643	T
SNP	2190	6207	1	1000646	A
SNP	2191	6208	1	1000667	G
SNP	2192	6209	1	1000676	G
SNP	2193	6213	1	1003443	C
SNP	2194	6214	1	1003774	G
SNP	2195	6215	1	1004069	A
SNP	2196	6216	1	1004132	T
SNP	2197	6217	1	1004216	A
SNP	2198	6246	1	1007331	A
SNP	2199	6247	1	1009963	A
DEL	2200	7966,8084	1	1010171	377
SNP	2201	6248	1	1010615	A
SNP	2202	6249	1	1012667	A
SNP	2203	6250	1	1013316	A
SNP	2204	6251	1	1015201	A
SNP	2205	6252	1	1015579	G
SNP	2206	6253	1	1016171	T
SNP	2207	6254	1	1016238	T
SNP	2208	6255	1	1018917	C
SNP	2209	6256	1	1019166	A
DEL	2210	6257	1	1019169	1
SNP	2211	6258	1	1020321	G
SNP	2212	6259	1	1020427	A
SNP	2213	6260	1	1020617	T
SNP	2214	6261	1	1022826	C
SNP	2215	6262	1	1024260	G
SNP	2216	6264	1	1027483	T
SNP	2217	6265	1	1028007	C
SNP	2218	6266	1	1028310	C
SNP	2219	6267	1	1029085	T
INS	2220	6268	1	1029579	T	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=T
SNP	2221	6269	1	1030847	A
INS	2222	8085	1	1031019	GATGAATT	repeat_length=8	repeat_new_copies=2	repeat_ref_copies=1	repeat_seq=GATGAATT
SNP	2223	6270	1	1033202	C
SUB	2224	6271,6272,6273	1	1034982	3	GTA
SNP	2225	6274	1	1034992	G
INS	2226	6275	1	1034993	T
SUB	2227	6276,6277	1	1034996	2	GG
DEL	2228	6278	1	1034999	1
SUB	2229	6279,6280	1	1035004	2	AG
SNP	2230	6281	1	1040937	G
SNP	2231	6282	1	1041066	C
SNP	2232	6283	1	1041575	A
SNP	2233	6284	1	1041999	C
SNP	2234	6285	1	1042169	A
SNP	2235	6286	1	1045282	G
SNP	2236	6288	1	1048574	C
SNP	2237	6289	1	1049282	A
SNP	2238	6290	1	1050633	C
INS	2239	6291	1	1051121	A
SNP	2240	6292	1	1053609	T
SNP	2241	6293	1	1053650	G
SNP	2242	6294	1	1053730	G
SNP	2243	6295	1	1053819	G
SNP	2244	6296	1	1054118	A
SNP	2245	6297	1	1054987	A
SNP	2246	6298	1	1055588	G
SNP	2247	6299	1	1055664	C
SNP	2248	6300	1	1057055	A
SNP	2249	6301	1	1058310	G
SNP	2250	6302	1	1059064	A
SNP	2251	6303	1	1059227	C
SNP	2252	6304	1	1059944	C
SNP	2253	6305	1	1060648	T
SNP	2254	6306	1	1063909	C
SNP	2255	6307	1	1065749	C
SNP	2256	6308	1	1065773	A
SNP	2257	6309	1	1066757	C
SNP	2258	6310	1	1068615	T
SNP	2259	6311	1	1071599	T
SNP	2260	6313	1	1073517	A
SNP	2261	6314	1	1073888	A
SNP	2262	6315	1	1075172	C
SNP	2263	6316	1	1075837	C
SNP	2264	6317	1	1076642	C
SNP	2265	6318	1	1077590	C
SNP	2266	6319	1	1078553	C
SNP	2267	6320	1	1078639	T
SNP	2268	6321	1	1079125	C
SNP	2269	6322	1	1079679	T
SNP	2270	6323	1	1079730	A
SNP	2271	6324	1	1080207	C
SNP	2272	6325	1	1080433	C
SNP	2273	6326	1	1082049	G
SNP	2274	6328	1	1086760	C
SNP	2275	6329	1	1086922	G
SNP	2276	6330	1	1089761	A
SNP	2277	6331	1	1091131	C
SNP	2278	6332	1	1091709	G
SNP	2279	6333	1	1092214	C
SNP	2280	6334	1	1092331	C
SNP	2281	6336	1	1093886	G
SNP	2282	6337	1	1094515	A
SNP	2283	6338	1	1094993	T
SNP	2284	6339	1	1096631	T
SNP	2285	6340	1	1096712	C
SNP	2286	6341	1	1097221	A
SNP	2287	6342	1	1097720	C
SNP	2288	6343	1	1097797	C
SNP	2289	6344	1	1098855	C
SNP	2290	6345	1	1101438	G
SNP	2291	6346	1	1102421	G
SNP	2292	6347	1	1104183	G
SNP	2293	6348	1	1104186	C
SNP	2294	6349	1	1104210	C
SNP	2295	6350	1	1104233	A
SNP	2296	6351	1	1104237	C
SNP	2297	6352	1	1104239	A
SNP	2298	6353	1	1104709	A
SNP	2299	6354	1	1105703	T
SNP	2300	6355	1	1106604	C
SNP	2301	6356	1	1107152	C
SNP	2302	6357	1	1107268	A
SNP	2303	6359	1	1107907	A
SNP	2304	6360	1	1108203	G
SNP	2305	6361	1	1109367	T
SNP	2306	6362	1	1111341	A
SNP	2307	6363	1	1111950	A
SNP	2308	6364	1	1113330	T
SNP	2309	6365	1	1114989	G
SNP	2310	6366	1	1116434	A
SNP	2311	6367	1	1117113	A
SNP	2312	6368	1	1120832	T
SNP	2313	6369	1	1121122	C
SNP	2314	6370	1	1121746	A
SNP	2315	6371	1	1122483	A
SNP	2316	6372	1	1122770	T
SNP	2317	6373	1	1124776	G
SNP	2318	6374	1	1125556	A
SNP	2319	6375	1	1126791	C
SNP	2320	6376	1	1126816	G
SNP	2321	6377	1	1126975	A
SNP	2322	6378	1	1129460	G
SNP	2323	6379	1	1130181	G
SNP	2324	6380	1	1130827	G
SNP	2325	6381	1	1130948	C
SNP	2326	6382	1	1131005	G
SNP	2327	6384	1	1137688	T
SNP	2328	6385	1	1138024	T
SNP	2329	6386	1	1138302	C
SNP	2330	6387	1	1138600	C
SNP	2331	6388	1	1138697	A
SNP	2332	6389	1	1139745	G
SNP	2333	6390	1	1139779	A
SNP	2334	6391	1	1139860	G
DEL	2335	7970,8088	1	1140758	45
SNP	2336	6392	1	1141574	G
SNP	2337	6393	1	1141776	T
SNP	2338	6394	1	1141795	C
SNP	2339	6395	1	1142119	T
SNP	2340	6396	1	1143459	C
SNP	2341	6397	1	1143648	T
SNP	2342	6398	1	1143864	C
SNP	2343	6399	1	1149442	A
SNP	2344	6400	1	1150974	C
SNP	2345	6401	1	1151494	A
SNP	2346	6402	1	1151665	A
SNP	2347	6403	1	1152167	C
SNP	2348	6404	1	1152681	G
DEL	2349	7972,8089	1	1155772	3
SNP	2350	6405	1	1155851	C
SNP	2351	6406	1	1158036	C
SNP	2352	6407	1	1158128	G
SNP	2353	6408	1	1160135	T
SNP	2354	6409	1	1160336	G
SNP	2355	6410	1	1160338	T
SNP	2356	6411	1	1160459	C
SNP	2357	6412	1	1162870	T
SNP	2358	6413	1	1165501	T
SNP	2359	6414	1	1167554	A
SNP	2360	6415	1	1168255	C
SNP	2361	6416	1	1168301	A
SNP	2362	6417	1	1169738	T
SNP	2363	6418	1	1169833	C
SNP	2364	6419	1	1173661	T
SNP	2365	6420	1	1175289	A
SNP	2366	6421	1	1175581	C
SNP	2367	6422	1	1175808	C
SNP	2368	6423	1	1176342	C
SNP	2369	6424	1	1176999	T
SNP	2370	6425	1	1177646	A
SNP	2371	6426	1	1177734	A
INS	2372	6427	1	1178470	G
SNP	2373	6428	1	1178769	A
SNP	2374	6429	1	1178815	G
SNP	2375	6430	1	1179707	G
SNP	2376	6431	1	1180276	T
SNP	2377	6432	1	1180891	T
SNP	2378	6433	1	1181053	C
SNP	2379	6437	1	1181574	T
SNP	2380	6438	1	1184361	A
SNP	2381	6439	1	1184455	A
SNP	2382	6440	1	1185405	C
SNP	2383	6441	1	1186156	G
SNP	2384	6442	1	1186183	A
SNP	2385	6443	1	1187950	A
SNP	2386	6444	1	1187974	T
SNP	2387	6445	1	1188025	A
SNP	2388	6446	1	1188113	T
SNP	2389	6447	1	1188118	G
SNP	2390	6448	1	1188134	G
SNP	2391	6449	1	1189271	G
SNP	2392	6450	1	1190736	A
SNP	2393	6451	1	1190829	T
SNP	2394	6452	1	1191463	A
SNP	2395	6453	1	1191960	T
SNP	2396	6454	1	1191980	C
INS	2397	6455	1	1193186	T
SNP	2398	6456	1	1193537	T
SNP	2399	6457	1	1193906	G
SNP	2400	6458	1	1194277	T
SNP	2401	6459	1	1194627	C
DEL	2402	8091	1	1195757	4
SNP	2403	6464	1	1197682	C
SNP	2404	6465	1	1197698	C
SNP	2405	6466	1	1197736	C
SNP	2406	6467	1	1197745	G
SNP	2407	6468	1	1197847	A
SNP	2408	6469	1	1197929	T
SNP	2409	6470	1	1197943	T
SNP	2410	6471	1	1197952	T
SNP	2411	6472	1	1197970	T
SNP	2412	6473	1	1197979	A
SNP	2413	6474	1	1198013	A
SNP	2414	6475	1	1198022	C
SNP	2415	6476	1	1198049	C
SNP	2416	6477	1	1198052	G
SNP	2417	6478	1	1198058	A
SNP	2418	6479	1	1198063	C
SNP	2419	6480	1	1198067	A
SNP	2420	6481	1	1198070	T
SNP	2421	6482	1	1198076	T
SNP	2422	6483	1	1198091	A
SUB	2423	6484,6485	1	1198099	2	GT
SNP	2424	6486	1	1198103	T
SNP	2425	6487	1	1198109	A
SNP	2426	6488	1	1198118	G
SNP	2427	6489	1	1198124	C
SNP	2428	6490	1	1198127	T
SNP	2429	6491	1	1198131	T
SNP	2430	6492	1	1198133	A
SNP	2431	6493	1	1198139	T
SNP	2432	6494	1	1198142	T
SNP	2433	6495	1	1198148	G
SNP	2434	6496	1	1198160	A
SNP	2435	6497	1	1198163	A
SNP	2436	6498	1	1198169	A
SNP	2437	6499	1	1198175	A
SNP	2438	6500	1	1198178	A
SNP	2439	6501	1	1198181	C
SNP	2440	6502	1	1198184	A
SNP	2441	6503	1	1198187	T
SNP	2442	6504	1	1198193	C
SNP	2443	6505	1	1198199	C
SNP	2444	6506	1	1198202	A
SNP	2445	6507	1	1198205	C
SNP	2446	6508	1	1198208	G
SNP	2447	6509	1	1198238	C
SNP	2448	6510	1	1198283	A
SNP	2449	6511	1	1198301	T
SNP	2450	6512	1	1198370	C
SNP	2451	6513	1	1198412	A
SNP	2452	6514	1	1198418	G
SNP	2453	6515	1	1198433	C
SNP	2454	6516	1	1198439	T
SNP	2455	6517	1	1198469	G
SNP	2456	6518	1	1198502	C
SNP	2457	6519	1	1198511	T
SNP	2458	6520	1	1198515	T
SNP	2459	6521	1	1198517	G
SNP	2460	6522	1	1198521	A
SNP	2461	6523	1	1198523	T
SUB	2462	6524,6525	1	1198532	2	AC
SNP	2463	6526	1	1198535	C
SNP	2464	6527	1	1198541	A
SNP	2465	6528	1	1198544	G
SNP	2466	6529	1	1198548	A
SNP	2467	6530	1	1198550	A
SUB	2468	6531,6532	1	1198556	2	TC
SNP	2469	6533	1	1198559	A
SNP	2470	6534	1	1198565	C
SNP	2471	6535	1	1198669	T
SNP	2472	6536	1	1198717	T
SNP	2473	6537	1	1198742	C
SNP	2474	6538	1	1198748	T
SNP	2475	6539	1	1198791	C
SNP	2476	6540	1	1198803	C
SNP	2477	6541	1	1198815	G
SNP	2478	6542	1	1198824	C
SNP	2479	6543	1	1198827	A
SNP	2480	6544	1	1198873	A
SNP	2481	6545	1	1198890	G
SNP	2482	6546	1	1198893	G
SUB	2483	6547,6548	1	1198896	2	AT
SNP	2484	6549	1	1198899	A
SNP	2485	6550	1	1198908	C
SNP	2486	6551	1	1198911	C
SNP	2487	6552	1	1198918	A
SNP	2488	6553	1	1198920	T
SNP	2489	6554	1	1198923	T
SNP	2490	6555	1	1198970	C
SNP	2491	6556	1	1199038	C
SNP	2492	6557	1	1199040	A
SNP	2493	6558	1	1199069	G
SNP	2494	6559	1	1199076	C
SNP	2495	6560	1	1199078	G
SNP	2496	6561	1	1199101	A
SNP	2497	6562	1	1199103	G
SNP	2498	6563	1	1199154	A
SNP	2499	6564	1	1199192	T
SNP	2500	6565	1	1199205	T
SNP	2501	6566	1	1199211	G
SNP	2502	6567	1	1199232	G
SNP	2503	6568	1	1199241	A
SNP	2504	6569	1	1199254	T
SNP	2505	6570	1	1199271	T
SUB	2506	7974,8093	1	1199280	2455	TT
SNP	2507	6571	1	1201740	G
SUB	2508	6572,6573	1	1201746	2	TT
SNP	2509	6574	1	1201758	A
SNP	2510	6575	1	1201767	G
SNP	2511	6576	1	1202079	A
SNP	2512	6577	1	1202091	G
SNP	2513	6578	1	1202124	A
SNP	2514	6579	1	1202145	G
SNP	2515	6580	1	1202157	A
SNP	2516	6581	1	1202218	G
SNP	2517	6582	1	1202256	C
SNP	2518	6583	1	1202286	A
SNP	2519	6584	1	1202316	A
SNP	2520	6585	1	1202325	C
DEL	2521	7975,8094	1	1202363	313
SNP	2522	6586	1	1202716	T
SNP	2523	6587	1	1202724	T
SNP	2524	6588	1	1202733	C
SNP	2525	6589	1	1202739	G
SNP	2526	6590	1	1202742	G
SNP	2527	6591	1	1202745	A
SUB	2528	6592,6593	1	1202748	2	TA
SNP	2529	6594	1	1202751	T
SNP	2530	6595	1	1202754	G
SNP	2531	6596	1	1202757	T
SNP	2532	6597	1	1202778	T
SNP	2533	6598	1	1202797	C
SNP	2534	6599	1	1202799	G
SNP	2535	6600	1	1202820	G
SNP	2536	6601	1	1202841	G
SNP	2537	6602	1	1202853	A
SNP	2538	6603	1	1202892	A
SUB	2539	6604,6605	1	1202924	2	CC
SNP	2540	6606	1	1202930	C
SNP	2541	6607	1	1202960	C
SNP	2542	6608	1	1202964	C
SNP	2543	6609	1	1202986	A
SNP	2544	6610	1	1202999	G
SNP	2545	6611	1	1203013	G
SNP	2546	6612	1	1203030	T
SNP	2547	6613	1	1203052	C
SNP	2548	6614	1	1203060	T
SNP	2549	6615	1	1203118	A
SNP	2550	6616	1	1203138	T
SNP	2551	6617	1	1203159	T
SNP	2552	6618	1	1203165	G
SNP	2553	6619	1	1203188	C
SNP	2554	6620	1	1203352	T
SNP	2555	6621	1	1203381	T
SNP	2556	6622	1	1203396	C
SNP	2557	6623	1	1203411	C
SNP	2558	6624	1	1203414	T
SNP	2559	6625	1	1203423	A
SNP	2560	6626	1	1203480	A
SNP	2561	6627	1	1203510	G
SNP	2562	6628	1	1203513	G
SNP	2563	6629	1	1203519	T
SNP	2564	6630	1	1203528	C
SNP	2565	6631	1	1203558	C
SNP	2566	6632	1	1203986	C
SNP	2567	6633	1	1204056	T
SNP	2568	6634	1	1204058	A
SNP	2569	6635	1	1204061	C
SNP	2570	6636	1	1204067	A
SNP	2571	6637	1	1204070	T
SNP	2572	6638	1	1204076	C
SNP	2573	6639	1	1204091	A
SUB	2574	6640,6641,6642	1	1204106	3	TTG
SNP	2575	6643	1	1204112	T
SNP	2576	6644	1	1204127	A
SNP	2577	6645	1	1204133	G
INS	2578	6646	1	1204135	T
SUB	2579	6647,6648	1	1204138	2	CC
DEL	2580	6649	1	1204142	1
SNP	2581	6650	1	1204154	A
SUB	2582	6651,6652	1	1204157	2	GA
SNP	2583	6653	1	1204161	T
SNP	2584	6654	1	1204166	A
SNP	2585	6655	1	1204169	C
SNP	2586	6656	1	1204181	A
SNP	2587	6657	1	1204190	A
SUB	2588	6658,6659,6660,6661	1	1204199	4	ATCC
SNP	2589	6662	1	1204217	T
SNP	2590	6663	1	1204226	C
SUB	2591	6664,6665,6666,6667	1	1204229	4	AAAA
SNP	2592	6668	1	1204235	A
SUB	2593	6669,6670	1	1204240	2	TA
SUB	2594	6671,6672,6673	1	1204243	3	AAA
SNP	2595	6674	1	1204253	T
SUB	2596	6675,6676	1	1204256	2	AT
SNP	2597	6677	1	1204266	A
SNP	2598	6678	1	1204274	G
SNP	2599	6679	1	1204280	T
SNP	2600	6680	1	1204289	A
SNP	2601	6681	1	1204295	T
SNP	2602	6682	1	1204298	T
SUB	2603	6683,6684	1	1204304	2	GC
SNP	2604	6685	1	1204307	C
SNP	2605	6686	1	1204310	T
SNP	2606	6687	1	1204328	T
SNP	2607	6688	1	1204457	T
SNP	2608	6689	1	1204460	A
SNP	2609	6690	1	1204472	A
SNP	2610	6691	1	1204481	G
SNP	2611	6692	1	1204484	A
SNP	2612	6693	1	1204511	T
SNP	2613	6694	1	1204520	G
SUB	2614	6695,6696	1	1204529	2	GC
SNP	2615	6697	1	1204556	G
SNP	2616	6698	1	1204559	G
SNP	2617	6699	1	1204959	T
SNP	2618	6700	1	1204961	T
SNP	2619	6701	1	1204964	G
SNP	2620	6702	1	1204967	T
SNP	2621	6703	1	1204994	T
SNP	2622	6704	1	1204997	A
SUB	2623	6705,6706	1	1205001	2	AA
SNP	2624	6707	1	1205153	A
SNP	2625	6708	1	1205345	A
SNP	2626	6709	1	1205354	C
SNP	2627	6710	1	1205366	A
SNP	2628	6711	1	1205378	T
SNP	2629	6712	1	1205387	A
SNP	2630	6713	1	1205390	T
SNP	2631	6714	1	1205396	C
SNP	2632	6715	1	1205403	A
SNP	2633	6716	1	1205423	A
SNP	2634	6717	1	1205426	T
SNP	2635	6718	1	1205432	A
SNP	2636	6719	1	1205465	A
SNP	2637	6720	1	1205468	A
SNP	2638	6721	1	1205477	G
SNP	2639	6722	1	1205483	G
SNP	2640	6723	1	1205490	T
SNP	2641	6724	1	1205498	C
SNP	2642	6725	1	1205525	T
SNP	2643	6726	1	1205531	C
SUB	2644	6727,6728	1	1205540	2	TA
SNP	2645	6729	1	1205543	A
SNP	2646	6730	1	1205555	A
SNP	2647	6731	1	1205561	T
SNP	2648	6732	1	1205804	A
SNP	2649	6733	1	1206820	C
SNP	2650	6734	1	1207680	G
SNP	2651	6735	1	1208319	A
SNP	2652	6736	1	1211351	A
SNP	2653	6737	1	1211734	C
SNP	2654	6738	1	1212069	A
INS	2655	8095	1	1213903	GGCGTTACCAAAT	repeat_length=13	repeat_new_copies=2	repeat_ref_copies=1	repeat_seq=GGCGTTACCAAAT
SNP	2656	6740	1	1214331	G
DEL	2657	6741	1	1214363	1
SNP	2658	6742	1	1215148	T
SNP	2659	6743	1	1215658	T
SNP	2660	6744	1	1216276	C
SNP	2661	6745	1	1217473	G
SNP	2662	6746	1	1218374	G
SNP	2663	6747	1	1218994	T
SNP	2664	6748	1	1219237	A
SNP	2665	6749	1	1219620	G
SNP	2666	6750	1	1219998	G
SNP	2667	6751	1	1220637	A
SNP	2668	6752	1	1220968	G
DEL	2669	6753	1	1221083	1	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=8	repeat_seq=G
SNP	2670	6754	1	1221847	A
INS	2671	6755	1	1222333	G	repeat_length=1	repeat_new_copies=9	repeat_ref_copies=8	repeat_seq=G
SNP	2672	6756	1	1223940	C
SNP	2673	6757	1	1224301	A
SNP	2674	6758	1	1225185	T
SNP	2675	6759	1	1225448	C
SNP	2676	6760	1	1225576	T
SNP	2677	6761	1	1226236	T
SNP	2678	6762	1	1226597	T
SNP	2679	6763	1	1227151	G
SNP	2680	6764	1	1227710	T
SNP	2681	6765	1	1227779	T
SNP	2682	6766	1	1228138	A
SNP	2683	6767	1	1228391	G
SNP	2684	6768	1	1228455	T
SNP	2685	6771	1	1230389	A
SNP	2686	6772	1	1231439	T
SNP	2687	6775	1	1231573	T
SNP	2688	6776	1	1231844	A
SNP	2689	6777	1	1233103	G
SNP	2690	6778	1	1233547	G
SNP	2691	6779	1	1233613	T
SNP	2692	6780	1	1234073	A
SNP	2693	6781	1	1235760	G
SNP	2694	6782	1	1236335	G
SNP	2695	6783	1	1238835	C
SNP	2696	6784	1	1241304	A
SNP	2697	6785	1	1242402	T
DEL	2698	6786	1	1243218	1
SNP	2699	6787	1	1243304	C
SNP	2700	6788	1	1245214	A
SNP	2701	6789	1	1245376	A
SNP	2702	6790	1	1246213	G
SNP	2703	6791	1	1247357	C
SNP	2704	6792	1	1247416	A
SNP	2705	6793	1	1248575	A
SNP	2706	6794	1	1248618	C
SNP	2707	6795	1	1248722	A
SNP	2708	6796	1	1248896	G
SNP	2709	6797	1	1249128	C
SNP	2710	6798	1	1249398	C
SNP	2711	6799	1	1250210	G
SNP	2712	6800	1	1250574	A
SNP	2713	6801	1	1250648	C
SNP	2714	6802	1	1250711	T
SNP	2715	6803	1	1251672	A
SNP	2716	6804	1	1251737	T
SNP	2717	6805	1	1254329	G
SNP	2718	6806	1	1254559	T
SNP	2719	6807	1	1254650	A
SNP	2720	6808	1	1255755	C
SNP	2721	6809	1	1256788	A
SNP	2722	6810	1	1258324	C
SNP	2723	6811	1	1259514	C
SNP	2724	6812	1	1259609	G
SNP	2725	6813	1	1260552	A
SNP	2726	6814	1	1261125	T
SNP	2727	6815	1	1261469	T
SNP	2728	6816	1	1262180	A
SNP	2729	6817	1	1262669	A
SNP	2730	6818	1	1263344	C
SNP	2731	6820	1	1263836	A
SNP	2732	6821	1	1264552	G
SNP	2733	6822	1	1264844	C
SNP	2734	6823	1	1265205	G
SNP	2735	6824	1	1266757	G
SNP	2736	6825	1	1267275	G
SNP	2737	6826	1	1267807	A
SNP	2738	6827	1	1269141	T
SNP	2739	6828	1	1269191	T
SNP	2740	6829	1	1269202	T
SUB	2741	6830,6831,6832	1	1269211	3	TTC
SNP	2742	6833	1	1269216	T
SNP	2743	6834	1	1269220	A
SNP	2744	6835	1	1269224	G
SUB	2745	6836,6837	1	1269230	2	GA
SNP	2746	6838	1	1269237	A
SNP	2747	6839	1	1269271	G
SNP	2748	6840	1	1269281	G
SNP	2749	6841	1	1269285	G
SNP	2750	6842	1	1269345	A
SNP	2751	6843	1	1269348	A
SNP	2752	6844	1	1269403	G
SNP	2753	6845	1	1269451	T
SNP	2754	6846	1	1269453	T
SUB	2755	6847,6848,6849,6850	1	1269455	4	GGTA
SNP	2756	6851	1	1269466	A
SUB	2757	6852,6853	1	1269497	2	GG
SNP	2758	6854	1	1269525	A
INS	2759	6855	1	1269531	T
SUB	2760	6856,6857	1	1269532	2	GA
SUB	2761	6858,6859	1	1269536	2	TT
SUB	2762	6860,6861,6862	1	1269540	2	TCA
SNP	2763	6872	1	1272116	G
SNP	2764	6873	1	1272122	T
SNP	2765	6874	1	1272598	C
SNP	2766	6875	1	1273713	A
SNP	2767	6876	1	1274014	A
SNP	2768	6877	1	1275208	G
SNP	2769	6880	1	1276451	G
SNP	2770	6881	1	1279220	G
SNP	2771	6882	1	1280968	G
SNP	2772	6883	1	1281458	G
SNP	2773	6884	1	1281844	C
SNP	2774	6885	1	1282757	G
SNP	2775	6886	1	1283097	A
SNP	2776	6887	1	1283406	C
DEL	2777	7977,8099	1	1284792	10
SNP	2778	6888	1	1284824	C
SNP	2779	6889	1	1284953	C
SNP	2780	6890	1	1285635	T
SNP	2781	6891	1	1286479	A
SNP	2782	6892	1	1286610	C
SNP	2783	6893	1	1286766	C
SNP	2784	6894	1	1287913	A
SNP	2785	6895	1	1288247	T
SNP	2786	6896	1	1288584	T
SNP	2787	6897	1	1289021	A
SNP	2788	6898	1	1289612	G
SNP	2789	6899	1	1290333	T
SNP	2790	6900	1	1290343	G
DEL	2791	6901	1	1290420	1
SNP	2792	6902	1	1290977	G
SNP	2793	6903	1	1291448	G
SNP	2794	6904	1	1292383	G
SNP	2795	6905	1	1294239	T
SNP	2796	6906	1	1294371	C
SNP	2797	6907	1	1294788	T
SNP	2798	6908	1	1294880	C
SNP	2799	6909	1	1295182	T
SNP	2800	6910	1	1295364	A
SNP	2801	6911	1	1295414	A
SNP	2802	6912	1	1297207	A
SNP	2803	6913	1	1298651	C
SNP	2804	6914	1	1299549	G
SNP	2805	6916	1	1300823	A
SNP	2806	6917	1	1301176	C
SNP	2807	6918	1	1301714	C
INS	2808	6919	1	1305412	C	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=5	repeat_seq=C
SNP	2809	6920	1	1305436	T
SNP	2810	6921	1	1305511	C
SNP	2811	6922	1	1305738	A
SNP	2812	6923	1	1305778	G
SNP	2813	6924	1	1305833	G
SNP	2814	6925	1	1306632	C
DEL	2815	7978,8100	1	1306891	15
SNP	2816	6926	1	1307035	G
SNP	2817	6927	1	1307149	A
DEL	2818	6929,6930	1	1307347	2	repeat_length=1	repeat_new_copies=9	repeat_ref_copies=11	repeat_seq=A
SNP	2819	6931	1	1307829	A
SNP	2820	6932	1	1308096	A
SNP	2821	6933	1	1308115	T
SNP	2822	6934	1	1308175	A
DEL	2823	7979,8101	1	1308177	11
SNP	2824	6935	1	1308578	G
SNP	2825	6938	1	1311897	C
SNP	2826	6939	1	1311985	C
SNP	2827	6940	1	1311988	C
SNP	2828	6941	1	1312407	G
SNP	2829	6942	1	1313459	T
SNP	2830	6943	1	1314556	C
SNP	2831	6944	1	1315288	C
SNP	2832	6945	1	1316863	T
DEL	2833	7981,8103	1	1322748	849
SNP	2834	6946	1	1324726	G
SUB	2835	7982,8104	1	1325601	332	ACCAAATATGTTCATTAGAATG
SNP	2836	6947	1	1325938	A
SNP	2837	6948	1	1326592	T
SNP	2838	6949	1	1326806	T
SNP	2839	6950	1	1328775	C
DEL	2840	7983,8106	1	1328979	641
INS	2841	8107	1	1330189	GGTAAGTTG	repeat_length=9	repeat_new_copies=2	repeat_ref_copies=1	repeat_seq=GGTAAGTTG
DEL	2842	6952,6953,6954,6955,6956,6957,6958,6959,6960,6961	1	1330330	10	repeat_length=5	repeat_new_copies=5	repeat_ref_copies=7	repeat_seq=GCAAG
SNP	2843	6962	1	1330843	G
SNP	2844	6963	1	1332871	G
SNP	2845	6964	1	1333680	T
SNP	2846	6965	1	1334391	G
SNP	2847	6966	1	1334570	G
SNP	2848	6967	1	1335674	A
INS	2849	6968	1	1336030	C
SNP	2850	6969	1	1336137	T
SUB	2851	6970,6971	1	1336345	2	GA
SNP	2852	6972	1	1337813	A
SNP	2853	6973	1	1339239	G
SNP	2854	6974	1	1339705	C
SNP	2855	6975	1	1342207	A
SNP	2856	6976	1	1342849	C
SNP	2857	6977	1	1343954	A
SNP	2858	6978	1	1346583	G
SNP	2859	6979	1	1347567	C
SNP	2860	6980	1	1347839	A
SNP	2861	6981	1	1347892	A
SNP	2862	6982	1	1348027	A
SNP	2863	6983	1	1348286	G
SNP	2864	6984	1	1350243	G
SNP	2865	6985	1	1352739	G
SNP	2866	6986	1	1353069	A
SNP	2867	6987	1	1355001	C
INS	2868	6988,6989	1	1355741	GG	repeat_length=1	repeat_new_copies=9	repeat_ref_copies=7	repeat_seq=G
SNP	2869	6990	1	1355801	G
SNP	2870	6991	1	1355833	G
SNP	2871	6992	1	1356080	T
SNP	2872	6993	1	1357035	G
SNP	2873	6994	1	1357857	C
SNP	2874	6995	1	1357969	T
SNP	2875	6996	1	1359298	G
SNP	2876	6997	1	1359337	T
SNP	2877	6998	1	1360585	A
SNP	2878	6999	1	1360808	C
SNP	2879	7000	1	1362656	A
SNP	2880	7001	1	1362807	G
SNP	2881	7002	1	1363075	A
SNP	2882	7003	1	1363192	A
SNP	2883	7004	1	1364290	A
SNP	2884	7005	1	1364297	C
SNP	2885	7006	1	1364618	A
SNP	2886	7007	1	1364815	A
SNP	2887	7008	1	1366403	C
SNP	2888	7009	1	1368395	G
SNP	2889	7010	1	1368449	G
SNP	2890	7011	1	1370325	T
SNP	2891	7012	1	1373207	A
SNP	2892	7014	1	1374832	G
SNP	2893	7015	1	1375896	T
SNP	2894	7016	1	1376239	C
SNP	2895	7017	1	1376726	C
SNP	2896	7018	1	1380762	T
SNP	2897	7019	1	1382878	G
SNP	2898	7020	1	1383393	T
SNP	2899	7021	1	1383396	C
SNP	2900	7022	1	1383464	A
SNP	2901	7023	1	1387036	G
SNP	2902	7024	1	1387223	A
SNP	2903	7025	1	1387290	T
INS	2904	8110	1	1387521	GCGCCT
SNP	2905	7026	1	1388136	G
SNP	2906	7027	1	1388424	G
SNP	2907	7028	1	1388526	T
SNP	2908	7029	1	1390604	G
SNP	2909	7030	1	1391055	G
SNP	2910	7031	1	1391442	T
SNP	2911	7032	1	1391711	G
SNP	2912	7033	1	1392216	G
SNP	2913	7034	1	1393150	G
SNP	2914	7035	1	1393841	A
SNP	2915	7036	1	1394638	G
SNP	2916	7037	1	1394693	A
INS	2917	8112	1	1398270	ATTTCAACAGTGA
SNP	2918	7038	1	1399247	G
SNP	2919	7039	1	1399327	C
SNP	2920	7040	1	1399505	A
SNP	2921	7041	1	1401290	A
SNP	2922	7042	1	1401549	A
SNP	2923	7043	1	1402589	T
SNP	2924	7044	1	1405209	A
SNP	2925	7045	1	1405941	G
SNP	2926	7046	1	1406149	T
SNP	2927	7047	1	1406163	T
SNP	2928	7048	1	1406186	C
SNP	2929	7049	1	1406841	A
SNP	2930	7050	1	1406930	A
SNP	2931	7051	1	1407911	T
SNP	2932	7052	1	1408256	T
SNP	2933	7053	1	1409001	T
SNP	2934	7054	1	1409832	T
DEL	2935	7055	1	1409887	1
SNP	2936	7056	1	1410283	G
SNP	2937	7057	1	1413663	G
SNP	2938	7058	1	1413841	C
SNP	2939	7059	1	1413995	G
SNP	2940	7060	1	1414784	T
SNP	2941	7061	1	1415019	G
SUB	2942	7986,8113	1	1415503	415	GTAAGTGTCGTTTTTATAACGGCGTTGGCTGATA
SNP	2943	7062	1	1417660	G
SNP	2944	7063	1	1418445	T
SNP	2945	7064	1	1419277	C
SNP	2946	7065	1	1420277	G
SNP	2947	7066	1	1420512	C
SNP	2948	7067	1	1420515	C
SNP	2949	7068	1	1421804	C
SNP	2950	7069	1	1423156	C
SNP	2951	7070	1	1423934	A
SNP	2952	7071	1	1424049	G
SNP	2953	7072	1	1425025	A
SNP	2954	7073	1	1425183	G
SNP	2955	7074	1	1425419	C
SNP	2956	7075	1	1425545	T
SNP	2957	7080	1	1428198	T
SNP	2958	7081	1	1428201	T
SNP	2959	7082	1	1428205	T
SNP	2960	7083	1	1428209	G
SNP	2961	7084	1	1428234	T
SNP	2962	7085	1	1428339	T
SNP	2963	7086	1	1428341	T
SNP	2964	7087	1	1428367	A
SNP	2965	7088	1	1428372	T
SNP	2966	7089	1	1428395	T
SNP	2967	7090	1	1428518	C
SNP	2968	7091	1	1428722	T
SNP	2969	7092	1	1428736	T
SNP	2970	7093	1	1428860	A
SNP	2971	7094	1	1428865	C
SNP	2972	7095	1	1429144	C
SNP	2973	7096	1	1429150	A
SNP	2974	7097	1	1429156	G
SNP	2975	7098	1	1429159	T
SNP	2976	7099	1	1429168	T
SNP	2977	7100	1	1429192	A
SNP	2978	7101	1	1429201	G
SNP	2979	7102	1	1429207	G
SNP	2980	7103	1	1429225	A
SUB	2981	7104,7105	1	1429228	2	CT
SUB	2982	7106,7107	1	1429233	2	AC
SNP	2983	7108	1	1429240	A
SNP	2984	7109	1	1429246	A
SNP	2985	7110	1	1429252	G
SNP	2986	7111	1	1429264	T
SNP	2987	7112	1	1429273	G
SNP	2988	7113	1	1429291	C
SNP	2989	7114	1	1429300	T
SNP	2990	7115	1	1429315	T
SNP	2991	7116	1	1429317	A
SNP	2992	7117	1	1429387	A
SNP	2993	7118	1	1429449	T
SNP	2994	7121	1	1432157	A
DEL	2995	8114	1	1432248	4
SNP	2996	7122	1	1432815	C
SNP	2997	7123	1	1433757	G
SNP	2998	7124	1	1434248	T
SNP	2999	7125	1	1437196	A
SNP	3000	7126	1	1437674	C
SNP	3001	7127	1	1441216	A
SNP	3002	7128	1	1443318	C
SNP	3003	7129	1	1444816	C
SNP	3004	7130	1	1447755	C
SNP	3005	7131	1	1448029	G
SNP	3006	7132	1	1448939	A
SNP	3007	7133	1	1449092	G
INS	3008	7134	1	1450755	A	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=7	repeat_seq=A
SNP	3009	7135	1	1450954	G
SNP	3010	7136	1	1451011	A
SNP	3011	7137	1	1453454	G
SNP	3012	7138	1	1459226	T
SNP	3013	7139	1	1459425	G
SNP	3014	7140	1	1459946	T
SNP	3015	7141	1	1460453	A
DEL	3016	7990,8118	1	1461807	68
SNP	3017	7142	1	1462169	T
SNP	3018	7143	1	1462236	C
SNP	3019	7144	1	1462679	T
SNP	3020	7145	1	1463233	G
SNP	3021	7146	1	1463507	T
SNP	3022	7147	1	1464493	C
SNP	3023	7148	1	1464898	G
SNP	3024	7149	1	1465402	G
SNP	3025	7150	1	1466521	G
SNP	3026	7151	1	1467239	C
SNP	3027	7152	1	1467734	G
SNP	3028	7153	1	1469748	A
SNP	3029	7154	1	1470301	C
SNP	3030	7155	1	1471016	A
SNP	3031	7156	1	1471284	A
SNP	3032	7157	1	1471286	C
SNP	3033	7158	1	1471356	A
SNP	3034	7159	1	1474873	A
SNP	3035	7160	1	1475087	T
SNP	3036	7161	1	1475803	T
SNP	3037	7162	1	1479364	T
SNP	3038	7163	1	1480807	A
SNP	3039	7164	1	1481430	G
SNP	3040	7169	1	1483396	G
SNP	3041	7170	1	1483403	T
SNP	3042	7171	1	1483412	A
SNP	3043	7172	1	1483415	C
SNP	3044	7173	1	1483424	A
SNP	3045	7174	1	1483430	C
SNP	3046	7175	1	1483433	A
SNP	3047	7176	1	1483439	G
SNP	3048	7177	1	1483442	A
SNP	3049	7178	1	1483445	G
SNP	3050	7179	1	1483454	C
SNP	3051	7180	1	1483460	T
SNP	3052	7181	1	1483463	C
SNP	3053	7182	1	1483472	C
SNP	3054	7183	1	1483481	G
DEL	3055	7184	1	1483484	1
INS	3056	7185	1	1483488	C
SUB	3057	7186,7187,7188,7189	1	1483493	4	CTGC
SNP	3058	7190	1	1483683	C
SNP	3059	7191	1	1483713	C
SNP	3060	7192	1	1483856	G
SNP	3061	7193	1	1483859	G
SNP	3062	7194	1	1483862	G
SNP	3063	7195	1	1483874	T
SNP	3064	7196	1	1483892	G
SNP	3065	7197	1	1483895	G
SNP	3066	7198	1	1483898	G
SNP	3067	7199	1	1483908	A
SNP	3068	7200	1	1483916	G
SNP	3069	7201	1	1483922	G
SUB	3070	7202,7203	1	1483924	2	TT
SNP	3071	7204	1	1483928	G
SNP	3072	7205	1	1483940	A
SNP	3073	7206	1	1483982	G
SNP	3074	7207	1	1484024	C
SNP	3075	7208	1	1484027	G
SNP	3076	7209	1	1484048	C
SNP	3077	7210	1	1484051	G
SNP	3078	7211	1	1484075	G
SNP	3079	7212	1	1484078	G
SNP	3080	7213	1	1484081	A
SNP	3081	7214	1	1484090	G
SNP	3082	7215	1	1484096	G
SNP	3083	7216	1	1484111	C
SNP	3084	7217	1	1484114	C
SNP	3085	7218	1	1484120	T
SNP	3086	7219	1	1484132	A
SNP	3087	7220	1	1484147	C
SUB	3088	7221,7222	1	1484149	2	AC
SNP	3089	7223	1	1484153	G
SNP	3090	7224	1	1484162	G
SNP	3091	7225	1	1484171	T
SNP	3092	7226	1	1484177	A
SNP	3093	7227	1	1484189	G
SNP	3094	7228	1	1484210	G
SNP	3095	7229	1	1484270	G
SNP	3096	7230	1	1484279	C
SNP	3097	7231	1	1484288	C
SUB	3098	7232,7233	1	1484290	2	CA
SNP	3099	7234	1	1484296	A
SNP	3100	7235	1	1484302	C
SNP	3101	7236	1	1484306	C
SNP	3102	7237	1	1484309	C
SNP	3103	7238	1	1484312	T
SNP	3104	7239	1	1484315	C
SNP	3105	7240	1	1484318	T
SUB	3106	7241,7242	1	1484320	2	CC
SNP	3107	7243	1	1484324	C
SNP	3108	7244	1	1484333	G
SNP	3109	7245	1	1484353	C
SUB	3110	7246,7247	1	1484361	2	CA
SNP	3111	7248	1	1484371	G
DEL	3112	7249,7250,7251	1	1484382	3
SNP	3113	7252	1	1484403	A
SUB	3114	7253,7254	1	1484416	2	GA
SNP	3115	7255	1	1484429	T
SNP	3116	7256	1	1484441	A
SNP	3117	7257	1	1484453	A
SNP	3118	7258	1	1484465	T
SNP	3119	7259	1	1484474	A
SNP	3120	7260	1	1484489	A
SNP	3121	7261	1	1484498	G
SNP	3122	7262	1	1484519	T
SNP	3123	7263	1	1484523	C
SNP	3124	7264	1	1484525	G
SNP	3125	7265	1	1484555	T
SNP	3126	7266	1	1484561	A
SNP	3127	7267	1	1484602	C
SNP	3128	7268	1	1484633	C
SNP	3129	7269	1	1484678	T
SNP	3130	7270	1	1484681	G
SNP	3131	7271	1	1484687	T
SUB	3132	7272,7273	1	1484689	2	AA
SNP	3133	7274	1	1484693	C
SNP	3134	7275	1	1484699	A
SNP	3135	7276	1	1484702	A
SNP	3136	7277	1	1484714	G
SNP	3137	7278	1	1484723	G
SNP	3138	7279	1	1484735	G
SNP	3139	7280	1	1484946	G
SNP	3140	7281	1	1485004	T
SNP	3141	7282	1	1485106	A
SNP	3142	7283	1	1485109	C
SNP	3143	7284	1	1485122	G
SUB	3144	7285,7286	1	1485158	2	GA
SNP	3145	7287	1	1485187	T
SNP	3146	7288	1	1485199	A
SNP	3147	7289	1	1485220	A
SNP	3148	7290	1	1485226	T
SNP	3149	7291	1	1485244	A
SNP	3150	7292	1	1485259	G
SNP	3151	7293	1	1485274	T
SNP	3152	7294	1	1485337	A
SNP	3153	7295	1	1485339	T
SNP	3154	7296	1	1485343	C
SNP	3155	7297	1	1485367	A
DEL	3156	7298	1	1485388	1
SUB	3157	7299,7300	1	1485395	2	TC
SNP	3158	7301	1	1485433	T
SNP	3159	7302	1	1485439	G
SNP	3160	7303	1	1485442	C
SNP	3161	7304	1	1485493	C
SNP	3162	7305	1	1485508	G
SNP	3163	7306	1	1485511	C
SNP	3164	7307	1	1485526	T
SNP	3165	7308	1	1485529	G
SNP	3166	7309	1	1485540	C
SNP	3167	7310	1	1485550	T
SNP	3168	7311	1	1485595	T
SNP	3169	7312	1	1485598	C
SNP	3170	7313	1	1485631	A
SNP	3171	7314	1	1485640	T
SNP	3172	7315	1	1485652	A
SNP	3173	7316	1	1485706	A
SNP	3174	7317	1	1485709	A
SNP	3175	7318	1	1485733	A
SNP	3176	7319	1	1485745	A
SNP	3177	7320	1	1485748	C
SNP	3178	7321	1	1485763	A
SNP	3179	7322	1	1486989	G
SNP	3180	7323	1	1487010	C
SNP	3181	7324	1	1487302	G
SNP	3182	7325	1	1487470	T
DEL	3183	7326	1	1487614	1
SNP	3184	7327	1	1490694	A
SNP	3185	7328	1	1490751	G
SNP	3186	7329	1	1491664	A
SNP	3187	7330	1	1493653	A
SNP	3188	7331	1	1494580	C
SNP	3189	7332	1	1498236	T
SNP	3190	7333	1	1499692	C
SNP	3191	7334	1	1501482	C
SNP	3192	7335	1	1502134	G
SNP	3193	7336	1	1502395	C
SNP	3194	7337	1	1502887	A
SNP	3195	7338	1	1503326	T
SNP	3196	7339	1	1504737	C
SNP	3197	7340	1	1505234	A
SNP	3198	7341	1	1506397	A
SNP	3199	7342	1	1506578	A
SNP	3200	7343	1	1506710	A
SNP	3201	7344	1	1507715	C
SNP	3202	7345	1	1507829	T
SNP	3203	7346	1	1508266	T
SNP	3204	7347	1	1508289	C
SNP	3205	7348	1	1508304	G
SNP	3206	7349	1	1508549	A
SNP	3207	7350	1	1509830	G
SNP	3208	7351	1	1510242	A
SNP	3209	7352	1	1510540	A
SNP	3210	7356	1	1512031	C
SNP	3211	7357	1	1512423	A
SNP	3212	7358	1	1513795	G
SNP	3213	7359	1	1514689	C
SNP	3214	7360	1	1515424	T
SNP	3215	7361	1	1515541	G
SNP	3216	7362	1	1516760	C
SNP	3217	7363	1	1517368	A
SNP	3218	7364	1	1517626	G
SNP	3219	7365	1	1518287	C
SNP	3220	7366	1	1519779	C
SNP	3221	7367	1	1520740	G
SNP	3222	7368	1	1521006	G
SNP	3223	7369	1	1524979	G
SNP	3224	7370	1	1526034	G
SNP	3225	7371	1	1526544	C
SNP	3226	7372	1	1527139	G
SNP	3227	7373	1	1527968	C
SNP	3228	7374	1	1528252	T
SNP	3229	7375	1	1528708	C
SNP	3230	7376	1	1528750	A
SNP	3231	7377	1	1531128	A
DEL	3232	7378	1	1532623	1
INS	3233	7379	1	1532761	T
SNP	3234	7380	1	1534039	A
SNP	3235	7381	1	1534414	C
DEL	3236	7382	1	1535369	1	repeat_length=1	repeat_new_copies=4	repeat_ref_copies=5	repeat_seq=A
SNP	3237	7383	1	1535586	G
SNP	3238	7384	1	1535835	A
SNP	3239	7385	1	1535903	C
SNP	3240	7386	1	1536297	T
SNP	3241	7387	1	1536305	C
SNP	3242	7388	1	1536546	C
SNP	3243	7389	1	1537599	G
SNP	3244	7390	1	1539122	T
SNP	3245	7391	1	1539416	C
SNP	3246	7392	1	1539874	G
SNP	3247	7393	1	1540390	C
SNP	3248	7394	1	1540444	A
SNP	3249	7395	1	1540893	G
SNP	3250	7396	1	1541214	A
SNP	3251	7397	1	1542408	A
SNP	3252	7398	1	1542414	C
SNP	3253	7399	1	1542961	T
SNP	3254	7400	1	1543696	T
SNP	3255	7401	1	1544113	C
INS	3256	7402	1	1544387	T	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=T
SNP	3257	7403	1	1545511	G
SNP	3258	7404	1	1547223	G
SNP	3259	7405	1	1548294	C
SNP	3260	7406	1	1548942	C
SNP	3261	7407	1	1551730	G
SNP	3262	7408	1	1553403	C
SNP	3263	7409	1	1554100	G
SNP	3264	7410	1	1554442	T
SNP	3265	7411	1	1555925	C
SNP	3266	7412	1	1557281	A
SNP	3267	7413	1	1557422	T
SNP	3268	7414	1	1558005	A
SNP	3269	7415	1	1560877	G
SNP	3270	7416	1	1561350	A
SNP	3271	7417	1	1562315	G
SNP	3272	7418	1	1563944	C
SNP	3273	7419	1	1564986	T
SNP	3274	7420	1	1567413	C
SNP	3275	7421	1	1567498	T
SNP	3276	7422	1	1567982	G
SNP	3277	7423	1	1568732	A
SNP	3278	7424	1	1568974	T
SNP	3279	7425	1	1569930	A
SNP	3280	7426	1	1570180	G
SNP	3281	7427	1	1571298	G
SNP	3282	7428	1	1571393	A
SNP	3283	7429	1	1572273	T
SNP	3284	7430	1	1573299	A
SNP	3285	7431	1	1576554	G
SNP	3286	7432	1	1578234	G
SNP	3287	7433	1	1581254	T
SNP	3288	7434	1	1581951	A
INS	3289	7435	1	1582040	A	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=7	repeat_seq=A
SNP	3290	7436	1	1583244	C
SNP	3291	7437	1	1584009	G
SNP	3292	7438	1	1585108	C
SNP	3293	7439	1	1585437	G
SNP	3294	7440	1	1585587	C
SNP	3295	7441	1	1587027	A
SNP	3296	7442	1	1587036	G
SNP	3297	7443	1	1587212	G
SNP	3298	7444	1	1587228	G
SNP	3299	7445	1	1589083	T
SNP	3300	7446	1	1589950	A
SNP	3301	7447	1	1590301	A
SNP	3302	7448	1	1590470	G
SNP	3303	7450	1	1592076	G
SNP	3304	7451	1	1592447	G
SNP	3305	7453	1	1593242	G
SNP	3306	7454	1	1593576	A
SNP	3307	7455	1	1594198	C
DEL	3308	7456	1	1594754	1	repeat_length=1	repeat_new_copies=4	repeat_ref_copies=5	repeat_seq=T
SNP	3309	7457	1	1594986	C
SNP	3310	7458	1	1595293	A
SNP	3311	7459	1	1595616	T
SNP	3312	7460	1	1596272	A
SNP	3313	7461	1	1596585	T
SNP	3314	7462	1	1596697	T
SNP	3315	7463	1	1599563	T
SNP	3316	7464	1	1599637	A
SNP	3317	7465	1	1600004	T
SNP	3318	7466	1	1600090	G
SNP	3319	7467	1	1601191	G
SNP	3320	7468	1	1601809	G
SNP	3321	7469	1	1602123	G
SNP	3322	7470	1	1602340	C
SNP	3323	7471	1	1603796	C
SNP	3324	7472	1	1604338	A
SNP	3325	7473	1	1604603	G
SNP	3326	7474	1	1605904	G
SNP	3327	7475	1	1606839	C
SNP	3328	7476	1	1607465	T
SNP	3329	7477	1	1609118	A
SNP	3330	7478	1	1609530	G
SNP	3331	7479	1	1609940	G
SNP	3332	7480	1	1611503	A
SNP	3333	7481	1	1611684	A
DEL	3334	7482,7483	1	1613326	2
SNP	3335	7484	1	1613512	A
SNP	3336	7485	1	1613945	A
SNP	3337	7486	1	1616532	C
SNP	3338	7487	1	1616582	C
SNP	3339	7488	1	1616718	C
SNP	3340	7489	1	1617397	T
SNP	3341	7490	1	1617686	A
SNP	3342	7491	1	1618037	A
SNP	3343	7492	1	1622202	T
SNP	3344	7493	1	1623309	G
SNP	3345	7494	1	1625160	G
SNP	3346	7495	1	1625924	G
SNP	3347	7496	1	1626134	G
SNP	3348	7497	1	1626298	A
SNP	3349	7498	1	1632156	A
SNP	3350	7499	1	1632796	C
SNP	3351	7500	1	1633589	C
SNP	3352	7501	1	1636132	G
SNP	3353	7502	1	1636720	C
SNP	3354	7504	1	1637315	G
SNP	3355	7505	1	1638974	A
SNP	3356	7506	1	1641332	A
SNP	3357	7507	1	1641364	A
SNP	3358	7508	1	1641533	A
SNP	3359	7509	1	1642234	A
SNP	3360	7510	1	1643257	T
SNP	3361	7511	1	1644954	A
SNP	3362	7512	1	1645243	T
SNP	3363	7513	1	1645323	G
DEL	3364	7514,7515,7516,7517	1	1645873	4	repeat_length=4	repeat_new_copies=4	repeat_ref_copies=5	repeat_seq=CAAT
SNP	3365	7518	1	1646793	A
SNP	3366	7519	1	1647186	A
SNP	3367	7520	1	1647287	C
SNP	3368	7521	1	1648569	G
SNP	3369	7522	1	1648682	C
SNP	3370	7523	1	1648762	A
SNP	3371	7524	1	1649523	A
SNP	3372	7525	1	1649813	G
SNP	3373	7526	1	1651997	G
SNP	3374	7527	1	1652142	A
SNP	3375	7528	1	1652438	T
SNP	3376	7529	1	1652932	C
SNP	3377	7530	1	1653335	C
SNP	3378	7531	1	1653757	C
SNP	3379	7532	1	1654301	T
SNP	3380	7533	1	1655423	T
SNP	3381	7534	1	1658031	C
SNP	3382	7535	1	1658146	G
SNP	3383	7536	1	1660130	G
SNP	3384	7537	1	1663002	A
SNP	3385	7538	1	1663272	C
SNP	3386	7539	1	1669598	C
INS	3387	7540	1	1670036	T	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=T
SNP	3388	7541	1	1670064	T
SNP	3389	7542	1	1671170	G
SNP	3390	7543	1	1673270	A
SNP	3391	7544	1	1673823	A
SNP	3392	7545	1	1674985	A
SNP	3393	7546	1	1675414	G
SNP	3394	7547	1	1676695	C
SNP	3395	7548	1	1679892	A
SNP	3396	7549	1	1681715	C
SNP	3397	7550	1	1683818	C
SNP	3398	7551	1	1684036	G
SNP	3399	7552	1	1685024	C
SNP	3400	7553	1	1685314	C
SNP	3401	7554	1	1685830	A
SNP	3402	7555	1	1685979	A
SNP	3403	7556	1	1686299	A
SNP	3404	7557	1	1686873	A
SNP	3405	7558	1	1687133	G
SNP	3406	7559	1	1687617	G
SNP	3407	7560	1	1687928	A
SNP	3408	7562	1	1688347	C
SNP	3409	7564	1	1688420	A
SNP	3410	7565	1	1689074	T
SNP	3411	7566	1	1689840	C
SNP	3412	7567	1	1690270	G
SNP	3413	7568	1	1693441	T
SNP	3414	7569	1	1693905	G
SNP	3415	7570	1	1693980	T
SNP	3416	7571	1	1694020	T
SNP	3417	7572	1	1695541	T
SNP	3418	7573	1	1695695	A
SNP	3419	7574	1	1696919	T
INS	3420	8127	1	1699363	CATTAA
SNP	3421	7575	1	1699738	C
SNP	3422	7578	1	1700984	C
SNP	3423	7579	1	1701366	C
SNP	3424	7580	1	1703682	T
SNP	3425	7581	1	1704332	T
SNP	3426	7582	1	1704692	T
SNP	3427	7583	1	1705478	T
SNP	3428	7584	1	1706925	C
SNP	3429	7587	1	1709385	G
SNP	3430	7588	1	1709434	A
SNP	3431	7589	1	1710044	C
SNP	3432	7590	1	1710094	G
SNP	3433	7591	1	1711823	G
SNP	3434	7592	1	1712455	G
SNP	3435	7593	1	1713636	G
SNP	3436	7594	1	1713723	G
SNP	3437	7596	1	1713934	G
SNP	3438	7597	1	1715176	G
SNP	3439	7598	1	1720329	A
SNP	3440	7599	1	1720848	C
INS	3441	7600	1	1722118	A
SNP	3442	7601	1	1723242	C
SNP	3443	7602	1	1724024	C
SNP	3444	7603	1	1725413	T
SNP	3445	7604	1	1727603	A
SNP	3446	7605	1	1727776	G
SNP	3447	7606	1	1728386	A
SNP	3448	7607	1	1728566	C
SNP	3449	7608	1	1729049	A
SNP	3450	7609	1	1730391	A
SNP	3451	7610	1	1734784	C
SNP	3452	7611	1	1735911	A
SNP	3453	7612	1	1735992	A
SNP	3454	7613	1	1735995	A
SNP	3455	7614	1	1736215	A
SNP	3456	7615	1	1736448	G
SNP	3457	7616	1	1736852	A
SNP	3458	7617	1	1737669	G
SNP	3459	7618	1	1737691	C
SNP	3460	7619	1	1741803	C
SNP	3461	7620	1	1742868	G
SNP	3462	7621	1	1744616	T
SNP	3463	7622	1	1745396	C
SNP	3464	7623	1	1747150	A
SNP	3465	7624	1	1747651	A
SNP	3466	7625	1	1748561	C
SNP	3467	7626	1	1748767	T
SNP	3468	7627	1	1751581	A
SNP	3469	7628	1	1751858	C
SNP	3470	7629	1	1752446	T
SNP	3471	7630	1	1752813	A
SNP	3472	7631	1	1757225	A
SNP	3473	7632	1	1758239	T
SNP	3474	7633	1	1758392	A
SNP	3475	7634	1	1759303	C
SNP	3476	7635	1	1759773	G
SNP	3477	7636	1	1760111	G
SNP	3478	7637	1	1760403	C
SNP	3479	7638	1	1760822	A
DEL	3480	7639,7640	1	1760999	2	repeat_length=1	repeat_new_copies=5	repeat_ref_copies=7	repeat_seq=T
SNP	3481	7641	1	1762587	C
SNP	3482	7642	1	1762706	T
SNP	3483	7643	1	1763905	T
SNP	3484	7644	1	1767905	A
SNP	3485	7645	1	1767907	C
SNP	3486	7646	1	1768132	C
SNP	3487	7647	1	1768668	A
SNP	3488	7648	1	1768922	T
SNP	3489	7649	1	1769379	T
SNP	3490	7650	1	1773948	G
SNP	3491	7651	1	1774929	G
DEL	3492	7652	1	1775541	1	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=8	repeat_seq=T
SNP	3493	7653	1	1776440	A
SNP	3494	7654	1	1776967	T
SNP	3495	7655	1	1778466	C
SNP	3496	7656	1	1779844	A
INS	3497	8129	1	1780597	GTGCAGAC
SNP	3498	7657	1	1781262	A
SNP	3499	7658	1	1781645	G
SNP	3500	7659	1	1783168	T
SNP	3501	7660	1	1784412	C
SNP	3502	7661	1	1785103	A
SNP	3503	7662	1	1785624	G
SNP	3504	7663	1	1786545	G
SNP	3505	7664	1	1786547	A
SNP	3506	7665	1	1787256	C
SNP	3507	7666	1	1787299	A
SNP	3508	7667	1	1789280	T
SNP	3509	7668	1	1790479	C
SNP	3510	7669	1	1791032	G
SNP	3511	7670	1	1792352	C
SNP	3512	7671	1	1792708	A
SNP	3513	7672	1	1793291	A
SNP	3514	7673	1	1794614	C
SNP	3515	7674	1	1794821	C
SNP	3516	7675	1	1795342	A
SNP	3517	7676	1	1796173	A
SNP	3518	7677	1	1796416	G
SNP	3519	7678	1	1798594	C
SNP	3520	7679	1	1800051	A
SNP	3521	7680	1	1800792	C
SNP	3522	7681	1	1800962	T
SNP	3523	7682	1	1800990	C
SNP	3524	7683	1	1801027	A
SNP	3525	7684	1	1801153	T
SNP	3526	7685	1	1802099	T
DEL	3527	7686	1	1802974	1	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=9	repeat_seq=T
SNP	3528	7687	1	1803154	C
SNP	3529	7688	1	1804306	T
SNP	3530	7689	1	1805258	C
SNP	3531	7690	1	1805875	T
SNP	3532	7691	1	1806006	A
SNP	3533	7692	1	1806344	G
SNP	3534	7693	1	1808419	C
SNP	3535	7694	1	1809404	A
SNP	3536	7695	1	1809688	G
SNP	3537	7696	1	1810064	A
SNP	3538	7697	1	1811052	C
SNP	3539	7698	1	1811111	C
SNP	3540	7699	1	1814169	A
SNP	3541	7700	1	1814368	T
SNP	3542	7701	1	1815029	C
SNP	3543	7702	1	1815588	C
SNP	3544	7705	1	1816987	C
SNP	3545	7706	1	1819678	A
SNP	3546	7707	1	1820386	C
DEL	3547	7995,8134	1	1821007	15	repeat_length=15	repeat_new_copies=2	repeat_ref_copies=3	repeat_seq=GGAAGAACAATAAAA
SNP	3548	7709	1	1821527	G
SNP	3549	7710	1	1822146	A
SNP	3550	7714	1	1822883	C
SNP	3551	7715	1	1823363	G
SNP	3552	7716	1	1823571	A
SNP	3553	7717	1	1824231	T
SNP	3554	7718	1	1824704	C
SNP	3555	7719	1	1825870	C
SNP	3556	7720	1	1830692	G
SNP	3557	7721	1	1831977	A
SNP	3558	7722	1	1837782	G
SNP	3559	7723	1	1839682	T
SNP	3560	7724	1	1840809	T
SNP	3561	7725	1	1841645	T
SNP	3562	7726	1	1842282	C
SNP	3563	7727	1	1842495	G
SNP	3564	7728	1	1843763	A
SNP	3565	7729	1	1845875	A
SNP	3566	7730	1	1850334	G
SNP	3567	7731	1	1853714	T
SNP	3568	7732	1	1854678	A
SNP	3569	7733	1	1854766	G
SNP	3570	7734	1	1854828	C
SNP	3571	7735	1	1854978	A
SNP	3572	7736	1	1854986	A
SNP	3573	7737	1	1855172	T
SNP	3574	7738	1	1855806	T
SNP	3575	7739	1	1856836	C
SNP	3576	7740	1	1857001	C
SNP	3577	7741	1	1857446	C
SNP	3578	7742	1	1857845	C
SNP	3579	7743	1	1858551	C
SNP	3580	7744	1	1860502	G
SNP	3581	7745	1	1861812	C
SNP	3582	7746	1	1862819	A
SNP	3583	7747	1	1865047	G
SNP	3584	7748	1	1867240	C
SNP	3585	7749	1	1868968	C
SNP	3586	7750	1	1869880	C
SNP	3587	7751	1	1869953	A
SNP	3588	7752	1	1871514	C
SNP	3589	7753	1	1872090	A
SNP	3590	7754	1	1872945	A
SNP	3591	7755	1	1873159	C
SNP	3592	7756	1	1874296	A
SNP	3593	7757	1	1877891	T
SNP	3594	7758	1	1878294	G
SNP	3595	7759	1	1878904	G
SNP	3596	7761	1	1879316	A
SNP	3597	7762	1	1880230	T
SNP	3598	7763	1	1881742	T
SNP	3599	7764	1	1881865	G
SNP	3600	7765	1	1884109	C
SNP	3601	7766	1	1884253	A
SNP	3602	7767	1	1885853	T
DEL	3603	7768	1	1886586	1	repeat_length=1	repeat_new_copies=5	repeat_ref_copies=6	repeat_seq=A
SNP	3604	7769	1	1887045	C
SNP	3605	7770	1	1887481	A
SNP	3606	7771	1	1889068	A
SNP	3607	7772	1	1890109	G
SNP	3608	7773	1	1891263	C
SNP	3609	7774	1	1894401	C
SNP	3610	7775	1	1894439	T
SNP	3611	7776	1	1895494	A
SNP	3612	7777	1	1895981	A
SNP	3613	7778	1	1898148	G
SNP	3614	7779	1	1902150	C
SNP	3615	7780	1	1903797	T
SNP	3616	7781	1	1903963	T
SNP	3617	7782	1	1904095	G
SNP	3618	7783	1	1905182	G
SNP	3619	7784	1	1905344	A
SNP	3620	7785	1	1905410	C
SNP	3621	7786	1	1905860	G
SNP	3622	7787	1	1908824	T
SNP	3623	7788	1	1908827	G
SNP	3624	7789	1	1909743	A
SNP	3625	7790	1	1909784	G
SNP	3626	7791	1	1909813	T
SNP	3627	7793	1	1910348	G
SNP	3628	7794	1	1910636	A
SNP	3629	7800	1	1921229	C
SNP	3630	7801	1	1924577	C
SNP	3631	7802	1	1930432	A
SNP	3632	7803	1	1930880	A
DEL	3633	7805	1	1934285	1	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=9	repeat_seq=A
SNP	3634	7806	1	1934477	T
SNP	3635	7807	1	1935855	C
SNP	3636	7812	1	1941702	A
SNP	3637	7813	1	1943452	C
SNP	3638	7814	1	1943848	A
SNP	3639	7815	1	1945433	G
SNP	3640	7816	1	1951405	A
SNP	3641	7817	1	1953601	A
SNP	3642	7818	1	1954243	G
SNP	3643	7819	1	1956128	T
SNP	3644	7820	1	1956178	G
SNP	3645	7822	1	1964704	T
SNP	3646	7823	1	1966248	A
SNP	3647	7824	1	1971600	T
SNP	3648	7825	1	1972861	A
SNP	3649	7826	1	1972936	G
SNP	3650	7827	1	1973735	G
SNP	3651	7828	1	1976555	C
SNP	3652	7829	1	1983589	A
SNP	3653	7831	1	1995937	T
SNP	3654	7832	1	2000934	A
SNP	3655	7833	1	2001203	C
SNP	3656	7834	1	2002377	T
SNP	3657	7835	1	2006940	A
SNP	3658	7836	1	2007837	A
SNP	3659	7837	1	2008174	A
SNP	3660	7838	1	2009363	C
SNP	3661	7839	1	2010509	G
SNP	3662	7840	1	2011919	C
SNP	3663	7841	1	2012053	T
SNP	3664	7842	1	2012569	G
SNP	3665	7843	1	2013501	C
SNP	3666	7844	1	2016763	G
SNP	3667	7845	1	2019263	G
SNP	3668	7846	1	2023679	T
SNP	3669	7847	1	2025141	A
SNP	3670	7848	1	2025370	G
SNP	3671	7849	1	2026508	A
SNP	3672	7850	1	2027051	A
SNP	3673	7851	1	2027602	A
SNP	3674	7853	1	2028855	G
DEL	3675	7999,8141	1	2028876	6	repeat_length=6	repeat_new_copies=1	repeat_ref_copies=2	repeat_seq=CAGCGA
SNP	3676	7854	1	2030104	G
INS	3677	8142	1	2032147	GTAA
SNP	3678	7855	1	2032289	A
INS	3679	8143	1	2032573	CGCCC	repeat_length=5	repeat_new_copies=3	repeat_ref_copies=2	repeat_seq=CGCCC
SNP	3680	7856	1	2032921	T
SNP	3681	7858	1	2033762	T
DEL	3682	8000,8144	1	2034228	1001
SNP	3683	7859	1	2035352	A
SNP	3684	7860	1	2037478	A
SNP	3685	7862	1	2038102	T
SNP	3686	7863	1	2039585	C
SNP	3687	7864	1	2039855	A
SNP	3688	7865	1	2045127	T
SNP	3689	7866	1	2045633	A
SNP	3690	7867	1	2046521	A
SNP	3691	7868	1	2046770	C
SNP	3692	7869	1	2047168	G
SNP	3693	7870	1	2047520	G
INS	3694	7871	1	2048063	T	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=7	repeat_seq=T
SNP	3695	7872	1	2048830	G
SNP	3696	7873	1	2051793	A
SNP	3697	7874	1	2053961	A
SNP	3698	7875	1	2054379	T
SNP	3699	7876	1	2055319	A
SNP	3700	7877	1	2056438	G
SNP	3701	7878	1	2057262	C
SNP	3702	7879	1	2060754	A
SNP	3703	7880	1	2060926	A
SNP	3704	7881	1	2062615	C
SNP	3705	7882	1	2062983	A
SNP	3706	7883	1	2063524	A
SNP	3707	7884	1	2063623	G
SNP	3708	7885	1	2063677	A
SNP	3709	7886	1	2064606	G
SNP	3710	7887	1	2066310	A
SNP	3711	7888	1	2066669	G
SNP	3712	7889	1	2069301	C
SNP	3713	7890	1	2070718	G
SNP	3714	7891	1	2070761	C
SNP	3715	7892	1	2073215	G
SNP	3716	7893	1	2073880	G
SNP	3717	7896	1	2074800	A
SNP	3718	7897	1	2076967	C
SNP	3719	7898	1	2077150	G
SNP	3720	7899	1	2077522	C
SNP	3721	7900	1	2078319	C
SNP	3722	7901	1	2078323	C
SNP	3723	7902	1	2078633	G
SNP	3724	7903	1	2078883	C
SNP	3725	7904	1	2080789	T
SNP	3726	7905	1	2084944	A
SNP	3727	7906	1	2085121	C
SNP	3728	7907	1	2085140	G
SNP	3729	7908	1	2085316	G
SNP	3730	7909	1	2086148	G
SNP	3731	7910	1	2087457	C
SNP	3732	7911	1	2089333	G
SNP	3733	7912	1	2090800	G
SUB	3734	7913,7914	1	2091802	2	GA
SNP	3735	7915	1	2091969	C
SNP	3736	7917	1	2092853	C
SNP	3737	7918	1	2094923	A
SNP	3738	7922	1	2097203	C
SNP	3739	7923	1	2097370	C
SNP	3740	7924	1	2098258	G
SNP	3741	7925	1	2098646	A
SNP	3742	7926	1	2098929	C
SNP	3743	7927	1	2098958	C
SNP	3744	7928	1	2101421	A
SNP	3745	7929	1	2102281	G
SNP	3746	7930	1	2102865	C
SNP	3747	7931	1	2106161	G
SNP	3748	7932	1	2107649	T
SNP	3749	7933	1	2108052	C
RA	3750	.	1	1276	0	G	T	bias_e_value=1748660	bias_p_value=0.829083	consensus_score=290.6	fisher_strand_p_value=0.475728	frequency=1	ks_quality_p_value=0.99981	major_base=T	major_cov=48/54	major_frequency=9.903e-01	minor_base=C	minor_cov=1/0	new_cov=48/54	polymorphism_frequency=9.903e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/54
RA	3751	.	1	1525	0	G	A	consensus_score=202.2	frequency=1	major_base=A	major_cov=44/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/30
RA	3752	.	1	1710	0	T	C	consensus_score=268.4	frequency=1	major_base=C	major_cov=52/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/46
RA	3753	.	1	2015	0	T	C	consensus_score=235.3	frequency=1	major_base=C	major_cov=42/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/44
RA	3754	.	1	2911	0	A	G	consensus_score=257.1	frequency=1	major_base=G	major_cov=44/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/48
RA	3755	.	1	4364	0	C	T	consensus_score=128.3	frequency=1	major_base=T	major_cov=26/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/23
RA	3756	.	1	5160	0	C	T	consensus_score=173.2	frequency=1	major_base=T	major_cov=36/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/29
RA	3757	.	1	5213	0	A	G	bias_e_value=860929	bias_p_value=0.408189	consensus_score=69.0	fisher_strand_p_value=0.54023	frequency=1	ks_quality_p_value=0.252539	major_base=G	major_cov=18/10	major_frequency=9.333e-01	minor_base=A	minor_cov=2/0	new_cov=18/10	polymorphism_frequency=9.333e-01	polymorphism_score=-2.9	prediction=consensus	ref_cov=2/0	total_cov=20/10
RA	3758	.	1	5217	0	C	T	bias_e_value=860929	bias_p_value=0.408189	consensus_score=65.4	fisher_strand_p_value=0.54023	frequency=1	ks_quality_p_value=0.252539	major_base=T	major_cov=18/10	major_frequency=9.333e-01	minor_base=C	minor_cov=2/0	new_cov=18/10	polymorphism_frequency=9.333e-01	polymorphism_score=-2.9	prediction=consensus	ref_cov=2/0	total_cov=20/10
RA	3759	.	1	6336	0	G	A	consensus_score=111.0	frequency=1	major_base=A	major_cov=18/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/23
RA	3760	.	1	7403	0	C	T	bias_e_value=1744190	bias_p_value=0.826965	consensus_score=206.8	fisher_strand_p_value=0.472973	frequency=1	ks_quality_p_value=0.99963	major_base=T	major_cov=39/34	major_frequency=9.865e-01	minor_base=G	minor_cov=0/1	new_cov=39/34	polymorphism_frequency=9.865e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/35
RA	3761	.	1	8760	0	T	A	consensus_score=233.3	frequency=1	major_base=A	major_cov=30/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/55
RA	3762	.	1	9527	0	T	C	consensus_score=292.6	frequency=1	major_base=C	major_cov=48/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/58
RA	3763	.	1	10519	0	G	A	consensus_score=225.5	frequency=1	major_base=A	major_cov=31/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/53
RA	3764	.	1	11063	0	G	T	consensus_score=299.3	frequency=1	major_base=T	major_cov=58/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/50
RA	3765	.	1	11608	0	A	G	consensus_score=278.6	frequency=1	major_base=G	major_cov=55/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/54
RA	3766	.	1	11858	0	A	G	bias_e_value=1596410	bias_p_value=0.756902	consensus_score=254.6	fisher_strand_p_value=0.391753	frequency=1	ks_quality_p_value=0.994645	major_base=G	major_cov=59/37	major_frequency=9.897e-01	minor_base=T	minor_cov=0/1	new_cov=59/37	polymorphism_frequency=9.897e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/38
RA	3767	.	1	12389	0	C	T	consensus_score=218.4	frequency=1	major_base=T	major_cov=38/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/42
RA	3768	.	1	12910	0	C	T	bias_e_value=2109140	bias_p_value=1	consensus_score=231.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=44/40	major_frequency=9.882e-01	minor_base=C	minor_cov=1/0	new_cov=44/40	polymorphism_frequency=9.882e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=45/40
RA	3769	.	1	13458	0	A	G	consensus_score=230.2	frequency=1	major_base=G	major_cov=40/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/45
RA	3770	.	1	13741	0	A	C	consensus_score=262.5	frequency=1	major_base=C	major_cov=46/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/44
RA	3771	.	1	14038	0	C	A	consensus_score=183.1	frequency=1	major_base=A	major_cov=27/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/40
RA	3772	.	1	15675	0	A	G	consensus_score=234.8	frequency=1	major_base=G	major_cov=42/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/42
RA	3773	.	1	15956	0	G	T	consensus_score=282.9	frequency=1	major_base=T	major_cov=51/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/52
RA	3774	.	1	17307	0	G	C	consensus_score=308.7	frequency=1	major_base=C	major_cov=57/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/53
RA	3775	.	1	18266	0	T	G	consensus_score=14.2	frequency=1	major_base=G	major_cov=4/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/3
RA	3776	.	1	18306	0	G	A	consensus_score=10.2	frequency=1	major_base=A	major_cov=3/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/3
RA	3777	.	1	19380	0	A	G	consensus_score=241.9	frequency=1	major_base=G	major_cov=37/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/46
RA	3778	.	1	20739	0	G	A	consensus_score=206.2	frequency=1	major_base=A	major_cov=36/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/39
RA	3779	.	1	21692	0	G	A	consensus_score=148.7	frequency=1	major_base=A	major_cov=25/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/30
RA	3780	.	1	23124	0	T	G	bias_e_value=1.53478e-05	bias_p_value=7.27679e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=129.6	fisher_strand_p_value=2.42163e-13	frequency=3.605e-01	ks_quality_p_value=1	major_base=T	major_cov=13/42	major_frequency=6.395e-01	minor_base=G	minor_cov=31/0	new_cov=31/0	polymorphism_frequency=3.605e-01	polymorphism_score=12.2	prediction=polymorphism	ref_cov=13/42	total_cov=45/42
RA	3781	.	1	26688	0	C	T	consensus_score=177.3	frequency=1	major_base=T	major_cov=43/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/22
RA	3782	.	1	26717	1	.	A	consensus_score=145.4	frequency=1	major_base=A	major_cov=37/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/17
RA	3783	.	1	26774	0	A	C	consensus_score=77.8	frequency=1	major_base=C	major_cov=18/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/12
RA	3784	.	1	26914	0	T	G	consensus_score=170.6	frequency=1	major_base=G	major_cov=33/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/30
RA	3785	.	1	27211	0	C	T	consensus_score=270.5	frequency=1	major_base=T	major_cov=52/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/48
RA	3786	.	1	27823	0	G	T	consensus_score=264.7	frequency=1	major_base=T	major_cov=48/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/50
RA	3787	.	1	30427	0	T	G	consensus_score=296.1	frequency=1	major_base=G	major_cov=63/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/44
RA	3788	.	1	30452	0	A	G	bias_e_value=2109140	bias_p_value=1	consensus_score=286.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=60/42	major_frequency=9.903e-01	minor_base=T	minor_cov=1/0	new_cov=60/42	polymorphism_frequency=9.903e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/42
RA	3789	.	1	30537	0	G	A	consensus_score=285.2	frequency=1	major_base=A	major_cov=58/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/42
RA	3790	.	1	33283	0	A	G	consensus_score=311.6	frequency=1	major_base=G	major_cov=73/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=73/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=73/34
RA	3791	.	1	34002	0	C	G	bias_e_value=2109140	bias_p_value=1	consensus_score=204.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=29/45	major_frequency=9.867e-01	minor_base=C	minor_cov=0/1	new_cov=29/45	polymorphism_frequency=9.867e-01	polymorphism_score=-6.0	prediction=consensus	ref_cov=0/1	total_cov=29/46
RA	3792	.	1	35182	0	C	T	consensus_score=224.6	frequency=1	major_base=T	major_cov=49/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/34
RA	3793	.	1	37264	0	C	A	consensus_score=284.3	frequency=1	major_base=A	major_cov=59/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/47
RA	3794	.	1	39547	0	C	A	consensus_score=126.4	frequency=1	major_base=A	major_cov=31/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/14
RA	3795	.	1	40019	0	G	A	bias_e_value=2108070	bias_p_value=0.999493	consensus_score=274.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.96834	major_base=A	major_cov=48/54	major_frequency=9.903e-01	minor_base=T	minor_cov=0/1	new_cov=48/54	polymorphism_frequency=9.903e-01	polymorphism_score=-3.9	prediction=consensus	ref_cov=0/0	total_cov=48/55
RA	3796	.	1	43214	0	T	C	consensus_score=221.4	frequency=1	major_base=C	major_cov=50/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/30
RA	3797	.	1	43688	0	A	G	consensus_score=299.0	frequency=1	major_base=G	major_cov=58/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/49
RA	3798	.	1	43886	0	T	G	bias_e_value=4.11326e-10	bias_p_value=1.9502e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=170.1	fisher_strand_p_value=4.77007e-18	frequency=3.458e-01	ks_quality_p_value=1	major_base=T	major_cov=13/57	major_frequency=6.542e-01	minor_base=G	minor_cov=37/0	new_cov=37/0	polymorphism_frequency=3.458e-01	polymorphism_score=22.1	prediction=polymorphism	ref_cov=13/57	total_cov=53/57
RA	3799	.	1	44110	0	A	C	bias_e_value=27.9902	bias_p_value=1.32709e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=146.6	fisher_strand_p_value=8.88662e-07	frequency=2.286e-01	ks_quality_p_value=1	major_base=A	major_cov=36/18	major_frequency=7.714e-01	minor_base=C	minor_cov=0/16	new_cov=0/16	polymorphism_frequency=2.286e-01	polymorphism_score=10.2	prediction=polymorphism	ref_cov=36/18	total_cov=36/34
RA	3800	.	1	44139	0	T	C	bias_e_value=0.00558386	bias_p_value=2.64745e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=71.2	fisher_strand_p_value=1.10658e-10	frequency=3.333e-01	ks_quality_p_value=1	major_base=T	major_cov=35/9	major_frequency=6.667e-01	minor_base=C	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=3.333e-01	polymorphism_score=21.2	prediction=polymorphism	ref_cov=35/9	total_cov=35/31
RA	3801	.	1	44145	0	A	C	bias_e_value=0.0657616	bias_p_value=3.11793e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=120.1	fisher_strand_p_value=1.46078e-09	frequency=2.985e-01	ks_quality_p_value=1	major_base=A	major_cov=36/11	major_frequency=7.015e-01	minor_base=C	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.985e-01	polymorphism_score=10.7	prediction=polymorphism	ref_cov=36/11	total_cov=36/32
RA	3802	.	1	44149	0	G	T	bias_e_value=1.79659	bias_p_value=8.51809e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=107.2	fisher_strand_p_value=4.7698e-08	frequency=2.581e-01	ks_quality_p_value=1	major_base=G	major_cov=35/11	major_frequency=7.419e-01	minor_base=T	minor_cov=0/16	new_cov=0/16	polymorphism_frequency=2.581e-01	polymorphism_score=11.8	prediction=polymorphism	ref_cov=35/11	total_cov=35/27
RA	3803	.	1	44159	0	C	A	bias_e_value=0.0155087	bias_p_value=7.35309e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=99.4	fisher_strand_p_value=3.21694e-10	frequency=3.167e-01	ks_quality_p_value=1	major_base=C	major_cov=34/7	major_frequency=6.833e-01	minor_base=A	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=3.167e-01	polymorphism_score=12.4	prediction=polymorphism	ref_cov=34/7	total_cov=34/26
RA	3804	.	1	44181	0	G	C	bias_e_value=0.0997387	bias_p_value=4.72887e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=106.8	fisher_strand_p_value=2.26185e-09	frequency=2.836e-01	ks_quality_p_value=1	major_base=G	major_cov=37/11	major_frequency=7.164e-01	minor_base=C	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=2.836e-01	polymorphism_score=10.2	prediction=polymorphism	ref_cov=37/11	total_cov=37/30
RA	3805	.	1	44660	0	C	T	bias_e_value=198220	bias_p_value=0.0939815	consensus_score=188.8	fisher_strand_p_value=0.0189189	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=18/55	major_frequency=9.605e-01	minor_base=C	minor_cov=3/0	new_cov=18/55	polymorphism_frequency=9.605e-01	polymorphism_score=NA	prediction=consensus	ref_cov=3/0	total_cov=22/55
RA	3806	.	1	45724	0	A	G	consensus_score=279.7	frequency=1	major_base=G	major_cov=43/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/57
RA	3807	.	1	50933	0	C	T	consensus_score=196.4	frequency=1	major_base=T	major_cov=36/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/36
RA	3808	.	1	51100	0	C	A	consensus_score=333.4	frequency=1	major_base=A	major_cov=64/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/55
RA	3809	.	1	51570	0	T	C	consensus_score=343.2	frequency=1	major_base=C	major_cov=65/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/57
RA	3810	.	1	52165	0	G	C	consensus_score=340.6	frequency=1	major_base=C	major_cov=56/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/62
RA	3811	.	1	53772	0	T	C	consensus_score=224.3	frequency=1	major_base=C	major_cov=47/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/35
RA	3812	.	1	54307	0	C	A	bias_e_value=8.47301e-08	bias_p_value=4.01728e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=174.0	fisher_strand_p_value=1.13442e-15	frequency=3.131e-01	ks_quality_p_value=1	major_base=C	major_cov=55/13	major_frequency=6.869e-01	minor_base=A	minor_cov=0/31	new_cov=0/31	polymorphism_frequency=3.131e-01	polymorphism_score=29.8	prediction=polymorphism	ref_cov=55/13	total_cov=55/44
RA	3813	.	1	54318	0	T	C	bias_e_value=4.19139e-05	bias_p_value=1.98725e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=165.6	fisher_strand_p_value=6.85039e-13	frequency=2.667e-01	ks_quality_p_value=1	major_base=T	major_cov=57/20	major_frequency=7.333e-01	minor_base=C	minor_cov=0/28	new_cov=0/28	polymorphism_frequency=2.667e-01	polymorphism_score=12.0	prediction=polymorphism	ref_cov=57/20	total_cov=57/48
RA	3814	.	1	54348	0	G	A	bias_e_value=1.212e-10	bias_p_value=5.74641e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=159.0	fisher_strand_p_value=1.36377e-18	frequency=3.091e-01	ks_quality_p_value=1	major_base=G	major_cov=64/12	major_frequency=6.909e-01	minor_base=A	minor_cov=0/34	new_cov=0/34	polymorphism_frequency=3.091e-01	polymorphism_score=24.1	prediction=polymorphism	ref_cov=64/12	total_cov=64/46
RA	3815	.	1	54359	0	G	T	bias_e_value=3.41515e-06	bias_p_value=1.61921e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=222.0	fisher_strand_p_value=5.12372e-14	frequency=2.586e-01	ks_quality_p_value=1	major_base=G	major_cov=64/22	major_frequency=7.414e-01	minor_base=T	minor_cov=0/30	new_cov=0/30	polymorphism_frequency=2.586e-01	polymorphism_score=23.0	prediction=polymorphism	ref_cov=64/22	total_cov=64/52
RA	3816	.	1	54369	0	G	A	bias_e_value=1.06013e-06	bias_p_value=5.02638e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=167.5	fisher_strand_p_value=1.53198e-14	frequency=2.435e-01	ks_quality_p_value=1	major_base=G	major_cov=68/19	major_frequency=7.565e-01	minor_base=A	minor_cov=0/28	new_cov=0/28	polymorphism_frequency=2.435e-01	polymorphism_score=17.7	prediction=polymorphism	ref_cov=68/19	total_cov=68/52
RA	3817	.	1	54372	0	A	C	bias_e_value=3.78161e-07	bias_p_value=1.79296e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=219.4	fisher_strand_p_value=5.29329e-15	frequency=2.672e-01	ks_quality_p_value=1	major_base=A	major_cov=65/20	major_frequency=7.328e-01	minor_base=C	minor_cov=0/31	new_cov=0/31	polymorphism_frequency=2.672e-01	polymorphism_score=17.3	prediction=polymorphism	ref_cov=65/20	total_cov=65/52
RA	3818	.	1	55870	0	G	A	consensus_score=286.3	frequency=1	major_base=A	major_cov=52/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/53
RA	3819	.	1	56488	0	A	G	consensus_score=299.2	frequency=1	major_base=G	major_cov=43/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/61
RA	3820	.	1	57007	0	C	T	consensus_score=318.1	frequency=1	major_base=T	major_cov=46/71	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/71	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/71
RA	3821	.	1	57255	0	G	A	bias_e_value=2109140	bias_p_value=1	consensus_score=326.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999411	major_base=A	major_cov=58/58	major_frequency=9.915e-01	minor_base=G	minor_cov=0/1	new_cov=58/58	polymorphism_frequency=9.915e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=58/59
RA	3822	.	1	57406	0	C	T	consensus_score=281.1	frequency=1	major_base=T	major_cov=63/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/40
RA	3823	.	1	58153	0	A	C	bias_e_value=1651990	bias_p_value=0.783251	consensus_score=299.0	fisher_strand_p_value=0.427273	frequency=1	ks_quality_p_value=0.980019	major_base=C	major_cov=63/46	major_frequency=9.909e-01	minor_base=.	minor_cov=0/1	new_cov=63/46	polymorphism_frequency=9.909e-01	polymorphism_score=-3.2	prediction=consensus	ref_cov=0/0	total_cov=63/47
RA	3824	.	1	58233	1	.	A	consensus_score=260.6	frequency=1	major_base=A	major_cov=47/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/49
RA	3825	.	1	58239	0	C	.	consensus_score=434.2	frequency=1	major_base=.	major_cov=51/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/51
RA	3826	.	1	58701	0	C	T	consensus_score=282.7	frequency=1	major_base=T	major_cov=68/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=68/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/36
RA	3827	.	1	59648	0	C	G	consensus_score=312.1	frequency=1	major_base=G	major_cov=56/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/62
RA	3828	.	1	60722	0	T	G	consensus_score=293.4	frequency=1	major_base=G	major_cov=48/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/59
RA	3829	.	1	64460	0	C	T	consensus_score=292.0	frequency=1	major_base=T	major_cov=51/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/53
RA	3830	.	1	66513	0	C	T	consensus_score=344.3	frequency=1	major_base=T	major_cov=63/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/63
RA	3831	.	1	66568	0	G	T	consensus_score=323.3	frequency=1	major_base=T	major_cov=50/68	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/68	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/68
RA	3832	.	1	67118	0	T	C	consensus_score=297.0	frequency=1	major_base=C	major_cov=54/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/51
RA	3833	.	1	67137	0	C	T	consensus_score=301.8	frequency=1	major_base=T	major_cov=61/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/48
RA	3834	.	1	67911	0	G	A	consensus_score=258.9	frequency=1	major_base=A	major_cov=48/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/42
RA	3835	.	1	68233	0	A	G	consensus_score=309.8	frequency=1	major_base=G	major_cov=54/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/52
RA	3836	.	1	68684	0	A	G	consensus_score=331.5	frequency=1	major_base=G	major_cov=53/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/62
RA	3837	.	1	70664	0	T	A	consensus_score=137.7	frequency=1	major_base=A	major_cov=26/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/26
RA	3838	.	1	71237	0	G	A	consensus_score=249.6	frequency=1	major_base=A	major_cov=36/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/54
RA	3839	.	1	72047	0	A	G	consensus_score=368.7	frequency=1	major_base=G	major_cov=61/69	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/69	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/69
RA	3840	.	1	74013	0	A	G	bias_e_value=2109140	bias_p_value=0.999998	consensus_score=253.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.997943	major_base=G	major_cov=44/49	major_frequency=9.894e-01	minor_base=A	minor_cov=0/1	new_cov=44/49	polymorphism_frequency=9.894e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=44/50
RA	3841	.	1	74684	0	C	T	consensus_score=126.5	frequency=1	major_base=T	major_cov=24/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/23
RA	3842	.	1	77959	0	G	A	consensus_score=360.0	frequency=1	major_base=A	major_cov=57/77	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/77	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/77
RA	3843	.	1	80720	0	T	C	consensus_score=342.7	frequency=1	major_base=C	major_cov=67/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=67/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/54
RA	3844	.	1	80794	0	A	C	consensus_score=360.8	frequency=1	major_base=C	major_cov=71/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=71/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=71/59
RA	3845	.	1	81807	0	A	G	consensus_score=321.8	frequency=1	major_base=G	major_cov=47/68	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/68	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/68
RA	3846	.	1	82935	0	C	T	consensus_score=274.6	frequency=1	major_base=T	major_cov=56/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/44
RA	3847	.	1	84207	1	.	T	bias_e_value=1589230	bias_p_value=0.753497	consensus_score=334.1	fisher_strand_p_value=0.386555	frequency=1	ks_quality_p_value=0.998719	major_base=T	major_cov=73/45	major_frequency=9.916e-01	minor_base=.	minor_cov=0/1	new_cov=73/45	polymorphism_frequency=9.916e-01	polymorphism_score=-3.6	prediction=consensus	ref_cov=0/1	total_cov=73/46
RA	3848	.	1	85027	0	G	T	consensus_score=256.6	frequency=1	major_base=T	major_cov=47/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/47
RA	3849	.	1	86315	0	A	G	consensus_score=247.6	frequency=1	major_base=G	major_cov=39/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/50
RA	3850	.	1	87182	0	G	A	consensus_score=155.2	frequency=1	major_base=A	major_cov=26/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/32
RA	3851	.	1	89367	1	.	G	consensus_score=308.1	frequency=1	major_base=G	major_cov=50/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/59
RA	3852	.	1	89432	1	.	A	bias_e_value=389752	bias_p_value=0.184792	consensus_score=189.4	fisher_strand_p_value=0.0450782	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=38/30	major_frequency=9.444e-01	minor_base=.	minor_cov=0/4	new_cov=38/30	polymorphism_frequency=9.444e-01	polymorphism_score=1.9	prediction=consensus	ref_cov=0/4	total_cov=38/34
RA	3853	.	1	92107	0	A	G	consensus_score=318.7	frequency=1	major_base=G	major_cov=68/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=68/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/49
RA	3854	.	1	92397	0	T	C	consensus_score=315.9	frequency=1	major_base=C	major_cov=61/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/48
RA	3855	.	1	95486	0	A	G	consensus_score=371.7	frequency=1	major_base=G	major_cov=72/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=72/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=72/60
RA	3856	.	1	95726	0	C	T	consensus_score=242.8	frequency=1	major_base=T	major_cov=40/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/49
RA	3857	.	1	97407	1	.	G	bias_e_value=1559110	bias_p_value=0.739213	consensus_score=191.2	fisher_strand_p_value=0.375	frequency=1	ks_quality_p_value=0.990267	major_base=G	major_cov=26/45	major_frequency=9.861e-01	minor_base=A	minor_cov=1/0	new_cov=26/45	polymorphism_frequency=9.861e-01	polymorphism_score=-4.8	prediction=consensus	ref_cov=0/0	total_cov=27/45
RA	3858	.	1	97407	2	.	G	consensus_score=198.3	frequency=1	major_base=G	major_cov=27/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/45
RA	3859	.	1	97430	0	A	G	consensus_score=211.7	frequency=1	major_base=G	major_cov=32/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/49
RA	3860	.	1	97862	0	C	T	consensus_score=229.2	frequency=1	major_base=T	major_cov=45/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/39
RA	3861	.	1	97978	0	A	G	consensus_score=286.0	frequency=1	major_base=G	major_cov=51/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/55
RA	3862	.	1	98619	0	C	T	consensus_score=234.6	frequency=1	major_base=T	major_cov=32/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/55
RA	3863	.	1	99008	0	A	G	consensus_score=305.5	frequency=1	major_base=G	major_cov=52/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/57
RA	3864	.	1	103423	0	A	C	bias_e_value=1516340	bias_p_value=0.718937	consensus_score=257.5	fisher_strand_p_value=0.365591	frequency=1	ks_quality_p_value=0.961266	major_base=C	major_cov=59/33	major_frequency=9.892e-01	minor_base=A	minor_cov=0/1	new_cov=59/33	polymorphism_frequency=9.892e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=0/1	total_cov=59/34
RA	3865	.	1	105693	0	A	G	consensus_score=344.8	frequency=1	major_base=G	major_cov=60/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/64
RA	3866	.	1	105962	0	C	.	bias_e_value=638555	bias_p_value=0.302756	consensus_score=448.4	fisher_strand_p_value=0.0883619	frequency=1	ks_quality_p_value=1	major_base=.	major_cov=61/47	major_frequency=9.730e-01	minor_base=A	minor_cov=0/3	new_cov=61/47	polymorphism_frequency=9.730e-01	polymorphism_score=3.1	prediction=consensus	ref_cov=0/0	total_cov=61/52
RA	3867	.	1	107517	0	T	C	bias_e_value=2101120	bias_p_value=0.996195	consensus_score=295.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.914046	major_base=C	major_cov=52/56	major_frequency=9.908e-01	minor_base=T	minor_cov=0/1	new_cov=52/56	polymorphism_frequency=9.908e-01	polymorphism_score=-5.1	prediction=consensus	ref_cov=0/1	total_cov=52/57
RA	3868	.	1	110852	0	G	A	consensus_score=349.1	frequency=1	major_base=A	major_cov=62/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/64
RA	3869	.	1	111719	0	G	A	consensus_score=237.2	frequency=1	major_base=A	major_cov=37/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/50
RA	3870	.	1	112189	0	G	A	consensus_score=110.9	frequency=1	major_base=A	major_cov=23/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/20
RA	3871	.	1	112249	0	G	A	consensus_score=127.3	frequency=1	major_base=A	major_cov=28/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/20
RA	3872	.	1	112670	0	C	T	consensus_score=306.5	frequency=1	major_base=T	major_cov=52/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/61
RA	3873	.	1	112808	0	A	G	consensus_score=367.8	frequency=1	major_base=G	major_cov=70/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=70/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=70/61
RA	3874	.	1	113339	0	G	A	bias_e_value=2109140	bias_p_value=1	consensus_score=323.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999855	major_base=A	major_cov=57/60	major_frequency=9.915e-01	minor_base=T	minor_cov=0/1	new_cov=57/60	polymorphism_frequency=9.915e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/61
RA	3875	.	1	117692	0	A	G	bias_e_value=1685570	bias_p_value=0.799172	consensus_score=303.5	fisher_strand_p_value=0.4375	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=63/48	major_frequency=9.911e-01	minor_base=T	minor_cov=0/1	new_cov=63/48	polymorphism_frequency=9.911e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/50
RA	3876	.	1	118650	0	C	T	consensus_score=290.0	frequency=1	major_base=T	major_cov=64/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/42
RA	3877	.	1	119058	0	T	C	consensus_score=220.2	frequency=1	major_base=C	major_cov=41/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/38
RA	3878	.	1	121197	0	A	G	consensus_score=337.3	frequency=1	major_base=G	major_cov=67/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=67/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/53
RA	3879	.	1	121507	0	C	T	consensus_score=337.5	frequency=1	major_base=T	major_cov=60/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/63
RA	3880	.	1	122271	0	T	C	consensus_score=263.4	frequency=1	major_base=C	major_cov=50/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/46
RA	3881	.	1	123889	0	T	C	consensus_score=383.3	frequency=1	major_base=C	major_cov=69/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=69/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=69/65
RA	3882	.	1	125814	0	C	G	consensus_score=316.2	frequency=1	major_base=G	major_cov=69/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=69/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=69/46
RA	3883	.	1	126245	0	T	C	consensus_score=346.4	frequency=1	major_base=C	major_cov=61/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/63
RA	3884	.	1	126279	0	G	A	consensus_score=334.1	frequency=1	major_base=A	major_cov=54/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/66
RA	3885	.	1	126580	0	C	T	consensus_score=357.3	frequency=1	major_base=T	major_cov=61/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/67
RA	3886	.	1	127608	0	A	G	bias_e_value=1699500	bias_p_value=0.805777	consensus_score=371.4	fisher_strand_p_value=0.48062	frequency=1	ks_quality_p_value=0.927092	major_base=G	major_cov=61/67	major_frequency=9.922e-01	minor_base=A	minor_cov=1/0	new_cov=61/67	polymorphism_frequency=9.922e-01	polymorphism_score=-5.2	prediction=consensus	ref_cov=1/0	total_cov=62/67
RA	3887	.	1	127739	0	G	A	consensus_score=317.3	frequency=1	major_base=A	major_cov=68/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=68/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/46
RA	3888	.	1	128277	0	G	A	consensus_score=304.1	frequency=1	major_base=A	major_cov=53/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/61
RA	3889	.	1	128796	0	G	A	consensus_score=273.4	frequency=1	major_base=A	major_cov=50/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/51
RA	3890	.	1	129992	0	T	G	consensus_score=359.9	frequency=1	major_base=G	major_cov=76/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=76/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=76/55
RA	3891	.	1	130610	0	C	T	bias_e_value=1720860	bias_p_value=0.815906	consensus_score=255.1	fisher_strand_p_value=0.458333	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=43/52	major_frequency=9.896e-01	minor_base=G	minor_cov=1/0	new_cov=43/52	polymorphism_frequency=9.896e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/52
RA	3892	.	1	131236	0	C	A	bias_e_value=2109140	bias_p_value=1	consensus_score=148.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=32/21	major_frequency=9.815e-01	minor_base=C	minor_cov=1/0	new_cov=32/21	polymorphism_frequency=9.815e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=33/21
RA	3893	.	1	132318	0	C	T	consensus_score=370.7	frequency=1	major_base=T	major_cov=66/69	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/69	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/69
RA	3894	.	1	133846	0	A	G	bias_e_value=1776350	bias_p_value=0.842213	consensus_score=328.2	fisher_strand_p_value=0.495652	frequency=1	ks_quality_p_value=0.996193	major_base=G	major_cov=56/58	major_frequency=9.913e-01	minor_base=A	minor_cov=1/0	new_cov=56/58	polymorphism_frequency=9.913e-01	polymorphism_score=-5.3	prediction=consensus	ref_cov=1/0	total_cov=57/58
RA	3895	.	1	133909	0	G	A	consensus_score=298.1	frequency=1	major_base=A	major_cov=55/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/53
RA	3896	.	1	134636	0	C	A	bias_e_value=1729740	bias_p_value=0.820114	consensus_score=399.4	fisher_strand_p_value=0.463768	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=74/63	major_frequency=9.928e-01	minor_base=T	minor_cov=0/1	new_cov=74/63	polymorphism_frequency=9.928e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=74/64
RA	3897	.	1	134747	0	A	C	consensus_score=366.3	frequency=1	major_base=C	major_cov=70/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=70/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=70/60
RA	3898	.	1	135425	0	C	T	consensus_score=356.0	frequency=1	major_base=T	major_cov=55/76	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/76	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/76
RA	3899	.	1	135786	0	C	A	consensus_score=177.3	frequency=1	major_base=A	major_cov=26/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/36
RA	3900	.	1	136510	0	A	G	bias_e_value=393061	bias_p_value=0.186361	consensus_score=217.5	fisher_strand_p_value=0.0603823	frequency=1	ks_quality_p_value=0.754946	major_base=G	major_cov=45/42	major_frequency=9.457e-01	minor_base=C	minor_cov=5/0	new_cov=45/42	polymorphism_frequency=9.457e-01	polymorphism_score=-3.7	prediction=consensus	ref_cov=0/0	total_cov=50/42
RA	3901	.	1	136753	0	G	A	bias_e_value=0.000986644	bias_p_value=4.67794e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=162.5	fisher_strand_p_value=1.81804e-11	frequency=2.000e-01	ks_quality_p_value=1	major_base=G	major_cov=14/62	major_frequency=8.000e-01	minor_base=A	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.000e-01	polymorphism_score=11.8	prediction=polymorphism	ref_cov=14/62	total_cov=33/62
RA	3902	.	1	137616	0	C	T	consensus_score=127.7	frequency=1	major_base=T	major_cov=28/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/18
RA	3903	.	1	137790	0	G	A	consensus_score=92.0	frequency=1	major_base=A	major_cov=20/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/16
RA	3904	.	1	138500	0	C	T	consensus_score=313.5	frequency=1	major_base=T	major_cov=53/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/61
RA	3905	.	1	139246	0	A	G	consensus_score=347.2	frequency=1	major_base=G	major_cov=53/70	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/70	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/70
RA	3906	.	1	139714	0	G	A	consensus_score=225.6	frequency=1	major_base=A	major_cov=43/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/39
RA	3907	.	1	139956	0	G	A	bias_e_value=2109140	bias_p_value=1	consensus_score=429.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=93/71	major_frequency=9.939e-01	minor_base=C	minor_cov=1/0	new_cov=93/71	polymorphism_frequency=9.939e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=94/71
RA	3908	.	1	140086	0	G	T	bias_e_value=8539.08	bias_p_value=0.0040486	consensus_reject=FREQUENCY_CUTOFF	consensus_score=303.1	fisher_strand_p_value=0.000542094	frequency=7.697e-01	ks_quality_p_value=0.861497	major_base=T	major_cov=69/68	major_frequency=7.697e-01	minor_base=G	minor_cov=8/33	new_cov=69/68	polymorphism_frequency=7.697e-01	polymorphism_score=101.4	prediction=polymorphism	ref_cov=8/33	total_cov=77/101
RA	3909	.	1	140104	0	C	G	bias_e_value=20263.7	bias_p_value=0.00960755	consensus_reject=FREQUENCY_CUTOFF	consensus_score=319.8	fisher_strand_p_value=0.00278629	frequency=2.632e-01	ks_quality_p_value=0.448721	major_base=C	major_cov=71/69	major_frequency=7.368e-01	minor_base=G	minor_cov=13/37	new_cov=13/37	polymorphism_frequency=2.632e-01	polymorphism_score=135.8	prediction=polymorphism	ref_cov=71/69	total_cov=84/106
RA	3910	.	1	140112	0	A	.	bias_e_value=109810	bias_p_value=0.0520636	consensus_reject=FREQUENCY_CUTOFF	consensus_score=363.5	fisher_strand_p_value=0.00914222	frequency=2.760e-01	ks_quality_p_value=1	major_base=A	major_cov=69/70	major_frequency=7.240e-01	minor_base=.	minor_cov=15/38	new_cov=15/38	polymorphism_frequency=2.760e-01	polymorphism_score=174.1	prediction=polymorphism	ref_cov=69/70	total_cov=84/108
RA	3911	.	1	140162	0	A	G	consensus_score=476.7	frequency=1	major_base=G	major_cov=74/111	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=74/111	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=74/111
RA	3912	.	1	141011	0	A	G	consensus_score=309.5	frequency=1	major_base=G	major_cov=59/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/52
RA	3913	.	1	142259	0	G	A	consensus_score=386.9	frequency=1	major_base=A	major_cov=80/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=80/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=80/57
RA	3914	.	1	142952	0	A	G	consensus_score=296.1	frequency=1	major_base=G	major_cov=60/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/48
RA	3915	.	1	144702	0	G	A	consensus_score=240.6	frequency=1	major_base=A	major_cov=36/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/53
RA	3916	.	1	145752	0	C	A	consensus_score=239.7	frequency=1	major_base=A	major_cov=40/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/49
RA	3917	.	1	146533	0	T	G	consensus_score=272.0	frequency=1	major_base=G	major_cov=64/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/34
RA	3918	.	1	147786	0	G	C	consensus_score=330.4	frequency=1	major_base=C	major_cov=59/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/59
RA	3919	.	1	148483	0	G	A	consensus_score=337.5	frequency=1	major_base=A	major_cov=51/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/67
RA	3920	.	1	148634	0	A	G	consensus_score=285.4	frequency=1	major_base=G	major_cov=32/69	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/69	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/69
RA	3921	.	1	149860	0	C	G	consensus_score=261.5	frequency=1	major_base=G	major_cov=56/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/39
RA	3922	.	1	149864	0	G	T	consensus_score=263.7	frequency=1	major_base=T	major_cov=55/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/39
RA	3923	.	1	151967	0	G	A	bias_e_value=3370.21	bias_p_value=0.0015979	consensus_score=182.1	fisher_strand_p_value=0.000164521	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=21/50	major_frequency=8.987e-01	minor_base=C	minor_cov=8/0	new_cov=21/50	polymorphism_frequency=8.987e-01	polymorphism_score=-2.8	prediction=consensus	ref_cov=0/0	total_cov=29/50
RA	3924	.	1	153752	0	C	G	consensus_score=273.4	frequency=1	major_base=G	major_cov=49/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/47
RA	3925	.	1	154130	0	G	A	bias_e_value=2.05773e-05	bias_p_value=9.75623e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=192.1	fisher_strand_p_value=3.27987e-13	frequency=2.414e-01	ks_quality_p_value=1	major_base=G	major_cov=65/23	major_frequency=7.586e-01	minor_base=A	minor_cov=0/28	new_cov=0/28	polymorphism_frequency=2.414e-01	polymorphism_score=19.9	prediction=polymorphism	ref_cov=65/23	total_cov=65/52
RA	3926	.	1	154204	0	G	T	bias_e_value=3.59344e-07	bias_p_value=1.70374e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=121.9	fisher_strand_p_value=5.02209e-15	frequency=3.750e-01	ks_quality_p_value=1	major_base=G	major_cov=14/46	major_frequency=6.250e-01	minor_base=T	minor_cov=36/0	new_cov=36/0	polymorphism_frequency=3.750e-01	polymorphism_score=34.1	prediction=polymorphism	ref_cov=14/46	total_cov=50/46
RA	3927	.	1	154242	0	G	A	bias_e_value=0.872229	bias_p_value=4.13547e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=142.9	fisher_strand_p_value=2.22064e-08	frequency=2.472e-01	ks_quality_p_value=1	major_base=G	major_cov=24/43	major_frequency=7.528e-01	minor_base=A	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.472e-01	polymorphism_score=12.4	prediction=polymorphism	ref_cov=24/43	total_cov=46/43
RA	3928	.	1	154678	0	C	T	consensus_score=243.0	frequency=1	major_base=T	major_cov=40/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/49
RA	3929	.	1	154941	0	G	A	consensus_score=314.9	frequency=1	major_base=A	major_cov=53/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/58
RA	3930	.	1	155240	0	C	T	consensus_score=314.6	frequency=1	major_base=T	major_cov=59/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/50
RA	3931	.	1	155618	0	C	A	consensus_score=309.7	frequency=1	major_base=A	major_cov=60/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/53
RA	3932	.	1	156981	0	G	T	consensus_score=268.2	frequency=1	major_base=T	major_cov=49/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/51
RA	3933	.	1	157256	0	C	T	consensus_score=280.3	frequency=1	major_base=T	major_cov=61/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/42
RA	3934	.	1	157756	0	A	G	consensus_score=331.1	frequency=1	major_base=G	major_cov=54/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/64
RA	3935	.	1	158058	0	C	A	bias_e_value=2108850	bias_p_value=0.999859	consensus_score=274.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.98324	major_base=A	major_cov=45/54	major_frequency=9.802e-01	minor_base=C	minor_cov=1/1	new_cov=45/54	polymorphism_frequency=9.802e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=1/1	total_cov=46/55
RA	3936	.	1	159743	0	T	A	bias_e_value=0.480891	bias_p_value=2.28003e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=163.9	fisher_strand_p_value=1.18434e-08	frequency=2.333e-01	ks_quality_p_value=1	major_base=T	major_cov=23/46	major_frequency=7.667e-01	minor_base=A	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.333e-01	polymorphism_score=12.0	prediction=polymorphism	ref_cov=23/46	total_cov=45/46
RA	3937	.	1	159763	0	G	A	bias_e_value=0.482889	bias_p_value=2.28951e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=162.9	fisher_strand_p_value=1.18953e-08	frequency=2.323e-01	ks_quality_p_value=1	major_base=G	major_cov=28/48	major_frequency=7.677e-01	minor_base=A	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.323e-01	polymorphism_score=11.5	prediction=polymorphism	ref_cov=28/48	total_cov=51/48
RA	3938	.	1	160593	0	A	G	consensus_score=344.1	frequency=1	major_base=G	major_cov=61/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/57
RA	3939	.	1	161815	0	T	C	consensus_score=266.3	frequency=1	major_base=C	major_cov=53/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/41
RA	3940	.	1	163033	0	G	A	consensus_score=368.7	frequency=1	major_base=A	major_cov=59/73	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/73	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/73
RA	3941	.	1	164154	0	G	T	consensus_score=408.4	frequency=1	major_base=T	major_cov=74/69	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=74/69	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=74/69
RA	3942	.	1	165732	0	T	C	consensus_score=409.1	frequency=1	major_base=C	major_cov=75/70	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=75/70	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=75/70
RA	3943	.	1	166775	0	C	T	consensus_score=313.3	frequency=1	major_base=T	major_cov=57/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/58
RA	3944	.	1	167107	0	C	T	bias_e_value=1773950	bias_p_value=0.841077	consensus_score=298.3	fisher_strand_p_value=0.495726	frequency=1	ks_quality_p_value=0.992805	major_base=T	major_cov=57/59	major_frequency=9.915e-01	minor_base=C	minor_cov=1/0	new_cov=57/59	polymorphism_frequency=9.915e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=58/59
RA	3945	.	1	167739	0	G	A	consensus_score=268.6	frequency=1	major_base=A	major_cov=54/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/43
RA	3946	.	1	167947	0	T	C	consensus_score=356.8	frequency=1	major_base=C	major_cov=54/80	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/80	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/80
RA	3947	.	1	168684	0	A	.	bias_e_value=2107840	bias_p_value=0.999383	consensus_score=343.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.965068	major_base=.	major_cov=39/43	major_frequency=9.880e-01	minor_base=A	minor_cov=0/1	new_cov=39/43	polymorphism_frequency=9.880e-01	polymorphism_score=-2.6	prediction=consensus	ref_cov=0/1	total_cov=39/44
RA	3948	.	1	169120	0	G	T	consensus_score=268.3	frequency=1	major_base=T	major_cov=43/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/54
RA	3949	.	1	169239	0	A	G	consensus_score=281.2	frequency=1	major_base=G	major_cov=47/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/53
RA	3950	.	1	171066	0	C	G	consensus_score=424.0	frequency=1	major_base=G	major_cov=66/81	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/81	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/81
RA	3951	.	1	171216	0	G	A	consensus_score=295.8	frequency=1	major_base=A	major_cov=44/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/61
RA	3952	.	1	171581	0	G	A	consensus_score=296.7	frequency=1	major_base=A	major_cov=32/72	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/72	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/72
RA	3953	.	1	172218	0	A	G	consensus_score=386.8	frequency=1	major_base=G	major_cov=87/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=87/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=87/52
RA	3954	.	1	172285	0	T	C	consensus_score=406.7	frequency=1	major_base=C	major_cov=90/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=90/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=90/52
RA	3955	.	1	173472	0	A	G	consensus_score=255.6	frequency=1	major_base=G	major_cov=56/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/45
RA	3956	.	1	175001	0	T	C	consensus_score=200.9	frequency=1	major_base=C	major_cov=31/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/39
RA	3957	.	1	175154	0	A	G	consensus_score=279.0	frequency=1	major_base=G	major_cov=44/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/52
RA	3958	.	1	177308	0	C	T	consensus_score=420.0	frequency=1	major_base=T	major_cov=74/78	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=74/78	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=74/78
RA	3959	.	1	179477	0	C	T	consensus_score=284.0	frequency=1	major_base=T	major_cov=56/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/49
RA	3960	.	1	183605	0	T	C	consensus_score=248.5	frequency=1	major_base=C	major_cov=36/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/51
RA	3961	.	1	184392	0	T	C	consensus_score=322.6	frequency=1	major_base=C	major_cov=62/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/53
RA	3962	.	1	184672	0	A	G	consensus_score=360.6	frequency=1	major_base=G	major_cov=56/68	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/68	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/68
RA	3963	.	1	184732	0	T	C	consensus_score=320.8	frequency=1	major_base=C	major_cov=47/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/64
RA	3964	.	1	186848	0	G	A	consensus_score=334.8	frequency=1	major_base=A	major_cov=71/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=71/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=71/52
RA	3965	.	1	188582	0	G	A	consensus_score=278.6	frequency=1	major_base=A	major_cov=58/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/44
RA	3966	.	1	189410	0	C	T	consensus_score=230.0	frequency=1	major_base=T	major_cov=46/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/38
RA	3967	.	1	189668	0	T	C	consensus_score=234.2	frequency=1	major_base=C	major_cov=46/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/38
RA	3968	.	1	191791	0	T	C	consensus_score=316.3	frequency=1	major_base=C	major_cov=42/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/66
RA	3969	.	1	191939	0	C	G	consensus_score=260.9	frequency=1	major_base=G	major_cov=47/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/43
RA	3970	.	1	192869	0	T	C	consensus_score=117.6	frequency=1	major_base=C	major_cov=17/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/25
RA	3971	.	1	193583	0	T	G	consensus_score=277.2	frequency=1	major_base=G	major_cov=48/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/48
RA	3972	.	1	193862	0	G	T	consensus_score=389.6	frequency=1	major_base=T	major_cov=65/70	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/70	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/70
RA	3973	.	1	197569	0	C	T	consensus_score=337.0	frequency=1	major_base=T	major_cov=61/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/57
RA	3974	.	1	199357	0	T	C	consensus_score=394.5	frequency=1	major_base=C	major_cov=87/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=87/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=87/56
RA	3975	.	1	202696	0	A	G	consensus_score=327.9	frequency=1	major_base=G	major_cov=64/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/53
RA	3976	.	1	202904	0	T	G	consensus_score=415.6	frequency=1	major_base=G	major_cov=69/74	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=69/74	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=69/74
RA	3977	.	1	206893	0	T	C	consensus_score=401.9	frequency=1	major_base=C	major_cov=65/73	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/73	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/73
RA	3978	.	1	208033	0	T	G	consensus_score=310.2	frequency=1	major_base=G	major_cov=64/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/44
RA	3979	.	1	209828	0	C	T	bias_e_value=1736290	bias_p_value=0.823222	consensus_score=471.3	fisher_strand_p_value=0.467836	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=79/91	major_frequency=9.942e-01	minor_base=A	minor_cov=1/0	new_cov=79/91	polymorphism_frequency=9.942e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=80/91
RA	3980	.	1	210179	0	T	C	consensus_score=369.2	frequency=1	major_base=C	major_cov=70/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=70/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=70/57
RA	3981	.	1	210456	0	G	A	consensus_score=347.2	frequency=1	major_base=A	major_cov=72/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=72/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=72/54
RA	3982	.	1	210816	0	T	C	consensus_score=299.0	frequency=1	major_base=C	major_cov=50/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/59
RA	3983	.	1	211013	0	C	T	consensus_score=276.4	frequency=1	major_base=T	major_cov=71/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=71/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=71/28
RA	3984	.	1	212274	0	C	A	consensus_score=213.9	frequency=1	major_base=A	major_cov=12/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/65
RA	3985	.	1	212446	0	C	T	bias_e_value=1978430	bias_p_value=0.938025	consensus_score=249.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.669264	major_base=T	major_cov=24/67	major_frequency=9.891e-01	minor_base=C	minor_cov=0/1	new_cov=24/67	polymorphism_frequency=9.891e-01	polymorphism_score=-5.3	prediction=consensus	ref_cov=0/1	total_cov=24/68
RA	3986	.	1	213051	0	G	A	consensus_score=304.1	frequency=1	major_base=A	major_cov=65/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/47
RA	3987	.	1	213891	0	G	A	consensus_score=232.6	frequency=1	major_base=A	major_cov=46/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/39
RA	3988	.	1	215642	0	A	C	consensus_score=386.4	frequency=1	major_base=C	major_cov=79/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=79/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=79/56
RA	3989	.	1	215793	0	A	G	consensus_score=343.8	frequency=1	major_base=G	major_cov=58/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/60
RA	3990	.	1	216738	0	G	T	bias_e_value=1.00121e-05	bias_p_value=4.74698e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=209.1	fisher_strand_p_value=1.55685e-13	frequency=2.095e-01	ks_quality_p_value=1	major_base=G	major_cov=69/14	major_frequency=7.905e-01	minor_base=T	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.095e-01	polymorphism_score=15.7	prediction=polymorphism	ref_cov=69/14	total_cov=69/36
RA	3991	.	1	217959	0	G	A	consensus_score=322.6	frequency=1	major_base=A	major_cov=48/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/65
RA	3992	.	1	218586	0	T	G	consensus_score=278.4	frequency=1	major_base=G	major_cov=45/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/56
RA	3993	.	1	219834	0	C	A	consensus_score=263.1	frequency=1	major_base=A	major_cov=46/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/51
RA	3994	.	1	220563	0	A	G	consensus_score=322.4	frequency=1	major_base=G	major_cov=58/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/53
RA	3995	.	1	222139	0	T	C	consensus_score=204.5	frequency=1	major_base=C	major_cov=44/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/30
RA	3996	.	1	222977	0	C	T	consensus_score=246.0	frequency=1	major_base=T	major_cov=43/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/48
RA	3997	.	1	224162	0	T	C	consensus_score=298.0	frequency=1	major_base=C	major_cov=54/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/53
RA	3998	.	1	225539	0	G	A	consensus_score=344.2	frequency=1	major_base=A	major_cov=69/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=69/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=69/57
RA	3999	.	1	227728	0	C	T	consensus_score=233.1	frequency=1	major_base=T	major_cov=39/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/47
RA	4000	.	1	229827	0	G	A	consensus_score=275.4	frequency=1	major_base=A	major_cov=41/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/61
RA	4001	.	1	229848	0	G	A	consensus_score=233.4	frequency=1	major_base=A	major_cov=35/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/52
RA	4002	.	1	231672	0	G	A	consensus_score=330.2	frequency=1	major_base=A	major_cov=64/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/50
RA	4003	.	1	233521	0	A	G	consensus_score=302.1	frequency=1	major_base=G	major_cov=56/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/56
RA	4004	.	1	236590	0	C	T	consensus_score=281.7	frequency=1	major_base=T	major_cov=42/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/56
RA	4005	.	1	236633	0	T	G	consensus_score=253.0	frequency=1	major_base=G	major_cov=34/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/55
RA	4006	.	1	237197	0	G	A	consensus_score=316.0	frequency=1	major_base=A	major_cov=61/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/51
RA	4007	.	1	238279	0	C	T	consensus_score=356.3	frequency=1	major_base=T	major_cov=58/72	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/72	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/72
RA	4008	.	1	238946	0	C	T	consensus_score=414.8	frequency=1	major_base=T	major_cov=85/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=85/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=85/63
RA	4009	.	1	239495	0	T	C	consensus_score=319.3	frequency=1	major_base=C	major_cov=46/69	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/69	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/69
RA	4010	.	1	239512	0	T	G	consensus_score=311.8	frequency=1	major_base=G	major_cov=41/69	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/69	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/69
RA	4011	.	1	242533	0	T	C	consensus_score=343.2	frequency=1	major_base=C	major_cov=50/75	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/75	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/75
RA	4012	.	1	244062	0	A	G	consensus_score=345.6	frequency=1	major_base=G	major_cov=66/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/54
RA	4013	.	1	244419	0	C	A	consensus_score=419.9	frequency=1	major_base=A	major_cov=65/83	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/83	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/83
RA	4014	.	1	245478	0	G	A	consensus_score=359.0	frequency=1	major_base=A	major_cov=60/70	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/70	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/70
RA	4015	.	1	245942	0	A	C	bias_e_value=1981990	bias_p_value=0.939715	consensus_score=52.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.673507	major_base=C	major_cov=2/20	major_frequency=9.565e-01	minor_base=G	minor_cov=0/1	new_cov=2/20	polymorphism_frequency=9.565e-01	polymorphism_score=-3.2	prediction=consensus	ref_cov=0/0	total_cov=2/21
RA	4016	.	1	246101	0	G	T	consensus_score=237.5	frequency=1	major_base=T	major_cov=43/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/42
RA	4017	.	1	246304	0	C	A	consensus_score=307.2	frequency=1	major_base=A	major_cov=54/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/53
RA	4018	.	1	246347	0	C	A	consensus_score=336.8	frequency=1	major_base=A	major_cov=65/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/53
RA	4019	.	1	246479	0	A	G	consensus_score=298.4	frequency=1	major_base=G	major_cov=64/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/43
RA	4020	.	1	246639	0	A	C	bias_e_value=1.93118e-05	bias_p_value=9.15624e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=143.6	fisher_strand_p_value=3.07138e-13	frequency=2.841e-01	ks_quality_p_value=1	major_base=A	major_cov=12/51	major_frequency=7.159e-01	minor_base=C	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.841e-01	polymorphism_score=10.7	prediction=polymorphism	ref_cov=12/51	total_cov=37/52
RA	4021	.	1	246657	0	T	A	bias_e_value=0.000159057	bias_p_value=7.54133e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=135.8	fisher_strand_p_value=2.72971e-12	frequency=2.892e-01	ks_quality_p_value=1	major_base=T	major_cov=12/47	major_frequency=7.108e-01	minor_base=A	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.892e-01	polymorphism_score=17.2	prediction=polymorphism	ref_cov=12/47	total_cov=36/53
RA	4022	.	1	246665	0	G	A	bias_e_value=6.55699	bias_p_value=3.10884e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=127.3	fisher_strand_p_value=1.88602e-07	frequency=2.045e-01	ks_quality_p_value=1	major_base=G	major_cov=19/51	major_frequency=7.955e-01	minor_base=A	minor_cov=17/1	new_cov=17/1	polymorphism_frequency=2.045e-01	polymorphism_score=10.5	prediction=polymorphism	ref_cov=19/51	total_cov=37/52
RA	4023	.	1	246702	0	A	C	bias_e_value=1.98556	bias_p_value=9.41405e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=140.3	fisher_strand_p_value=5.30297e-08	frequency=2.674e-01	ks_quality_p_value=1	major_base=A	major_cov=43/20	major_frequency=7.326e-01	minor_base=C	minor_cov=1/22	new_cov=1/22	polymorphism_frequency=2.674e-01	polymorphism_score=11.1	prediction=polymorphism	ref_cov=43/20	total_cov=44/42
RA	4024	.	1	246776	0	A	C	bias_e_value=3.99957e-07	bias_p_value=1.8963e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=123.9	fisher_strand_p_value=5.60793e-15	frequency=3.407e-01	ks_quality_p_value=1	major_base=A	major_cov=51/9	major_frequency=6.593e-01	minor_base=C	minor_cov=1/30	new_cov=1/30	polymorphism_frequency=3.407e-01	polymorphism_score=19.4	prediction=polymorphism	ref_cov=51/9	total_cov=53/39
RA	4025	.	1	246820	0	A	G	consensus_score=238.8	frequency=1	major_base=G	major_cov=49/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/38
RA	4026	.	1	247569	0	T	A	bias_e_value=0.0908679	bias_p_value=4.30829e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=225.7	fisher_strand_p_value=2.05109e-09	frequency=2.000e-01	ks_quality_p_value=1	major_base=T	major_cov=66/26	major_frequency=8.000e-01	minor_base=A	minor_cov=1/22	new_cov=1/22	polymorphism_frequency=2.000e-01	polymorphism_score=17.4	prediction=polymorphism	ref_cov=66/26	total_cov=68/49
RA	4027	.	1	247580	0	T	G	consensus_score=295.6	frequency=1	major_base=G	major_cov=64/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/44
RA	4028	.	1	248818	0	A	G	consensus_score=88.8	frequency=1	major_base=G	major_cov=13/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/19
RA	4029	.	1	250089	0	T	C	consensus_score=232.2	frequency=1	major_base=C	major_cov=43/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/38
RA	4030	.	1	251409	0	C	T	consensus_score=159.9	frequency=1	major_base=T	major_cov=27/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/32
RA	4031	.	1	255881	0	A	C	consensus_score=340.9	frequency=1	major_base=C	major_cov=61/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/56
RA	4032	.	1	256265	0	C	T	consensus_score=223.2	frequency=1	major_base=T	major_cov=35/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/42
RA	4033	.	1	257147	0	G	T	consensus_score=230.2	frequency=1	major_base=T	major_cov=39/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/47
RA	4034	.	1	257742	0	G	A	consensus_score=326.7	frequency=1	major_base=A	major_cov=60/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/59
RA	4035	.	1	259600	0	A	G	consensus_score=289.2	frequency=1	major_base=G	major_cov=60/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/44
RA	4036	.	1	260108	0	A	C	consensus_score=314.3	frequency=1	major_base=C	major_cov=47/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/62
RA	4037	.	1	261069	0	A	G	bias_e_value=0.177666	bias_p_value=8.42359e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=119.6	fisher_strand_p_value=4.1495e-09	frequency=2.778e-01	ks_quality_p_value=1	major_base=A	major_cov=23/42	major_frequency=7.222e-01	minor_base=G	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.778e-01	polymorphism_score=15.2	prediction=polymorphism	ref_cov=23/42	total_cov=48/42
RA	4038	.	1	261375	0	G	A	bias_e_value=1417140	bias_p_value=0.671905	consensus_score=350.3	fisher_strand_p_value=0.461538	frequency=1	ks_quality_p_value=0.669521	major_base=A	major_cov=59/70	major_frequency=9.923e-01	minor_base=C	minor_cov=1/0	new_cov=59/70	polymorphism_frequency=9.923e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=0/0	total_cov=60/70
RA	4039	.	1	269948	0	C	T	consensus_score=182.0	frequency=1	major_base=T	major_cov=29/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/37
RA	4040	.	1	270110	0	C	T	consensus_score=283.8	frequency=1	major_base=T	major_cov=64/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/40
RA	4041	.	1	270892	0	G	A	consensus_score=218.6	frequency=1	major_base=A	major_cov=46/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/35
RA	4042	.	1	271971	0	C	T	consensus_score=242.5	frequency=1	major_base=T	major_cov=40/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/49
RA	4043	.	1	274059	0	G	A	bias_e_value=1669810	bias_p_value=0.791699	consensus_score=215.3	fisher_strand_p_value=0.428571	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=44/32	major_frequency=9.870e-01	minor_base=G	minor_cov=0/1	new_cov=44/32	polymorphism_frequency=9.870e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=44/33
RA	4044	.	1	274151	0	G	T	bias_e_value=2109140	bias_p_value=1	consensus_score=217.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=46/35	major_frequency=9.878e-01	minor_base=A	minor_cov=1/0	new_cov=46/35	polymorphism_frequency=9.878e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/35
RA	4045	.	1	275786	0	T	C	consensus_score=307.2	frequency=1	major_base=C	major_cov=50/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/55
RA	4046	.	1	276401	0	C	T	consensus_score=295.5	frequency=1	major_base=T	major_cov=50/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/59
RA	4047	.	1	278919	0	C	T	consensus_score=329.8	frequency=1	major_base=T	major_cov=52/71	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/71	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/71
RA	4048	.	1	280360	0	C	T	consensus_score=225.8	frequency=1	major_base=T	major_cov=28/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/55
RA	4049	.	1	282327	0	C	T	consensus_score=328.4	frequency=1	major_base=T	major_cov=55/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/66
RA	4050	.	1	283537	0	C	A	bias_e_value=1.97319e-06	bias_p_value=9.35543e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=205.6	fisher_strand_p_value=2.90824e-14	frequency=2.602e-01	ks_quality_p_value=1	major_base=C	major_cov=25/66	major_frequency=7.398e-01	minor_base=A	minor_cov=32/0	new_cov=32/0	polymorphism_frequency=2.602e-01	polymorphism_score=24.5	prediction=polymorphism	ref_cov=25/66	total_cov=57/66
RA	4051	.	1	283561	0	T	A	bias_e_value=0.000577945	bias_p_value=2.74019e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=224.6	fisher_strand_p_value=1.04242e-11	frequency=2.203e-01	ks_quality_p_value=1	major_base=T	major_cov=27/65	major_frequency=7.797e-01	minor_base=A	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=2.203e-01	polymorphism_score=14.8	prediction=polymorphism	ref_cov=27/65	total_cov=53/65
RA	4052	.	1	283844	0	A	G	bias_e_value=1.74823	bias_p_value=8.28881e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=92.8	fisher_strand_p_value=4.63391e-08	frequency=2.459e-01	ks_quality_p_value=1	major_base=A	major_cov=10/36	major_frequency=7.541e-01	minor_base=G	minor_cov=15/0	new_cov=15/0	polymorphism_frequency=2.459e-01	polymorphism_score=10.1	prediction=polymorphism	ref_cov=10/36	total_cov=26/36
RA	4053	.	1	283859	0	C	G	bias_e_value=0.0806851	bias_p_value=3.82549e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=105.4	fisher_strand_p_value=1.81048e-09	frequency=2.857e-01	ks_quality_p_value=1	major_base=C	major_cov=9/36	major_frequency=7.143e-01	minor_base=G	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.857e-01	polymorphism_score=11.9	prediction=polymorphism	ref_cov=9/36	total_cov=27/36
RA	4054	.	1	284087	0	G	A	consensus_score=291.0	frequency=1	major_base=A	major_cov=60/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/46
RA	4055	.	1	285754	0	G	A	consensus_score=315.0	frequency=1	major_base=A	major_cov=53/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/61
RA	4056	.	1	289609	0	T	.	consensus_score=460.0	frequency=1	major_base=.	major_cov=51/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/56
RA	4057	.	1	290145	0	C	A	consensus_score=177.8	frequency=1	major_base=A	major_cov=40/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/26
RA	4058	.	1	291262	0	C	A	consensus_score=211.1	frequency=1	major_base=A	major_cov=49/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/29
RA	4059	.	1	291698	0	A	C	consensus_score=274.3	frequency=1	major_base=C	major_cov=41/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/53
RA	4060	.	1	293248	0	T	C	consensus_score=233.2	frequency=1	major_base=C	major_cov=36/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/48
RA	4061	.	1	296489	0	C	T	consensus_score=274.4	frequency=1	major_base=T	major_cov=48/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/53
RA	4062	.	1	298588	0	T	C	consensus_score=225.2	frequency=1	major_base=C	major_cov=46/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/35
RA	4063	.	1	298968	0	T	A	bias_e_value=6.69321e-05	bias_p_value=3.17343e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=148.3	fisher_strand_p_value=1.11253e-12	frequency=2.603e-01	ks_quality_p_value=1	major_base=T	major_cov=48/6	major_frequency=7.397e-01	minor_base=A	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=2.603e-01	polymorphism_score=17.5	prediction=polymorphism	ref_cov=48/6	total_cov=48/25
RA	4064	.	1	299014	0	A	T	bias_e_value=1.865e-05	bias_p_value=8.84243e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=148.1	fisher_strand_p_value=2.96253e-13	frequency=2.727e-01	ks_quality_p_value=1	major_base=A	major_cov=49/7	major_frequency=7.273e-01	minor_base=T	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=2.727e-01	polymorphism_score=11.2	prediction=polymorphism	ref_cov=49/7	total_cov=49/28
RA	4065	.	1	299230	0	T	C	consensus_score=283.6	frequency=1	major_base=C	major_cov=58/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/42
RA	4066	.	1	300438	0	C	T	consensus_score=242.5	frequency=1	major_base=T	major_cov=44/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/45
RA	4067	.	1	301371	0	G	A	consensus_score=254.9	frequency=1	major_base=A	major_cov=44/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/48
RA	4068	.	1	303373	0	C	T	consensus_score=288.3	frequency=1	major_base=T	major_cov=57/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/48
RA	4069	.	1	304064	0	C	T	consensus_score=295.7	frequency=1	major_base=T	major_cov=47/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/63
RA	4070	.	1	306497	0	T	C	consensus_score=227.8	frequency=1	major_base=C	major_cov=33/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/46
RA	4071	.	1	306941	0	C	T	consensus_score=272.4	frequency=1	major_base=T	major_cov=44/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/51
RA	4072	.	1	307145	0	C	T	consensus_score=236.6	frequency=1	major_base=T	major_cov=44/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/43
RA	4073	.	1	307244	0	T	C	consensus_score=254.5	frequency=1	major_base=C	major_cov=45/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/44
RA	4074	.	1	307324	0	T	C	consensus_score=307.7	frequency=1	major_base=C	major_cov=58/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/51
RA	4075	.	1	307958	0	T	C	consensus_score=272.3	frequency=1	major_base=C	major_cov=38/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/61
RA	4076	.	1	308680	0	C	A	consensus_score=392.2	frequency=1	major_base=A	major_cov=76/68	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=76/68	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=76/68
RA	4077	.	1	309762	0	T	G	consensus_score=172.1	frequency=1	major_base=G	major_cov=29/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/33
RA	4078	.	1	310398	1	.	C	consensus_score=294.2	frequency=1	major_base=C	major_cov=64/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/37
RA	4079	.	1	312621	0	G	A	consensus_score=286.2	frequency=1	major_base=A	major_cov=43/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/57
RA	4080	.	1	313016	0	T	C	consensus_score=301.4	frequency=1	major_base=C	major_cov=48/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/60
RA	4081	.	1	313624	0	C	A	bias_e_value=1825650	bias_p_value=0.865587	consensus_score=285.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.528588	major_base=A	major_cov=61/43	major_frequency=9.905e-01	minor_base=C	minor_cov=1/0	new_cov=61/43	polymorphism_frequency=9.905e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=1/0	total_cov=62/43
RA	4082	.	1	316475	0	A	G	consensus_score=229.5	frequency=1	major_base=G	major_cov=36/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/45
RA	4083	.	1	316576	0	T	C	consensus_score=216.9	frequency=1	major_base=C	major_cov=30/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/49
RA	4084	.	1	316667	0	C	T	consensus_score=256.8	frequency=1	major_base=T	major_cov=50/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/44
RA	4085	.	1	317849	0	C	T	bias_e_value=2109140	bias_p_value=1	consensus_score=304.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999827	major_base=T	major_cov=49/58	major_frequency=9.907e-01	minor_base=A	minor_cov=0/1	new_cov=49/58	polymorphism_frequency=9.907e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/59
RA	4086	.	1	318903	0	T	G	consensus_score=320.9	frequency=1	major_base=G	major_cov=55/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/61
RA	4087	.	1	320418	0	T	C	consensus_score=336.1	frequency=1	major_base=C	major_cov=53/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/64
RA	4088	.	1	321437	0	T	C	consensus_score=311.9	frequency=1	major_base=C	major_cov=51/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/61
RA	4089	.	1	321922	0	A	C	consensus_score=244.3	frequency=1	major_base=C	major_cov=46/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/45
RA	4090	.	1	322384	0	A	C	consensus_score=255.7	frequency=1	major_base=C	major_cov=48/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/41
RA	4091	.	1	323635	0	A	G	consensus_score=307.2	frequency=1	major_base=G	major_cov=56/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/53
RA	4092	.	1	324126	0	C	T	consensus_score=353.2	frequency=1	major_base=T	major_cov=65/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/58
RA	4093	.	1	326418	0	A	C	consensus_score=311.7	frequency=1	major_base=C	major_cov=61/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/49
RA	4094	.	1	328265	0	C	T	consensus_score=314.7	frequency=1	major_base=T	major_cov=57/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/56
RA	4095	.	1	328301	0	C	T	consensus_score=313.3	frequency=1	major_base=T	major_cov=57/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/53
RA	4096	.	1	328550	0	C	T	consensus_score=210.7	frequency=1	major_base=T	major_cov=29/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/49
RA	4097	.	1	331759	0	A	C	consensus_score=364.4	frequency=1	major_base=C	major_cov=60/69	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/69	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/69
RA	4098	.	1	333098	0	T	C	consensus_score=93.1	frequency=1	major_base=C	major_cov=21/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/13
RA	4099	.	1	333266	0	C	T	consensus_score=216.3	frequency=1	major_base=T	major_cov=43/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/37
RA	4100	.	1	334477	0	T	G	consensus_score=230.7	frequency=1	major_base=G	major_cov=39/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/44
RA	4101	.	1	337645	0	C	A	consensus_score=255.4	frequency=1	major_base=A	major_cov=30/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/61
RA	4102	.	1	340074	0	A	G	consensus_score=267.9	frequency=1	major_base=G	major_cov=53/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/44
RA	4103	.	1	340969	0	A	G	consensus_score=229.9	frequency=1	major_base=G	major_cov=32/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/49
RA	4104	.	1	341479	0	T	C	consensus_score=223.4	frequency=1	major_base=C	major_cov=45/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/33
RA	4105	.	1	345306	0	C	T	consensus_score=253.0	frequency=1	major_base=T	major_cov=48/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/44
RA	4106	.	1	346625	0	T	C	consensus_score=315.3	frequency=1	major_base=C	major_cov=61/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/47
RA	4107	.	1	347035	0	G	A	consensus_score=256.1	frequency=1	major_base=A	major_cov=50/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/42
RA	4108	.	1	347777	0	A	G	consensus_score=273.9	frequency=1	major_base=G	major_cov=43/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/51
RA	4109	.	1	347983	0	A	G	consensus_score=316.5	frequency=1	major_base=G	major_cov=54/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/55
RA	4110	.	1	348779	0	G	A	consensus_score=223.8	frequency=1	major_base=A	major_cov=48/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/35
RA	4111	.	1	348849	0	C	T	bias_e_value=1769920	bias_p_value=0.839167	consensus_score=243.9	fisher_strand_p_value=0.489583	frequency=1	ks_quality_p_value=0.999781	major_base=T	major_cov=46/49	major_frequency=9.896e-01	minor_base=C	minor_cov=1/0	new_cov=46/49	polymorphism_frequency=9.896e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=48/49
RA	4112	.	1	348983	0	G	T	consensus_score=210.2	frequency=1	major_base=T	major_cov=38/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/39
RA	4113	.	1	349688	0	G	T	consensus_score=344.1	frequency=1	major_base=T	major_cov=51/69	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/69	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/69
RA	4114	.	1	349691	0	A	G	bias_e_value=1831910	bias_p_value=0.868557	consensus_score=334.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.533278	major_base=G	major_cov=51/68	major_frequency=9.917e-01	minor_base=.	minor_cov=0/1	new_cov=51/68	polymorphism_frequency=9.917e-01	polymorphism_score=-3.4	prediction=consensus	ref_cov=0/0	total_cov=51/69
RA	4115	.	1	350719	0	C	T	consensus_score=304.4	frequency=1	major_base=T	major_cov=50/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/57
RA	4116	.	1	351492	0	G	A	bias_e_value=1706530	bias_p_value=0.809109	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=4.0	fisher_strand_p_value=0.449725	frequency=5.000e-01	ks_quality_p_value=1	major_base=A	major_cov=7/8	major_frequency=5.000e-01	minor_base=G	minor_cov=4/11	new_cov=7/8	polymorphism_frequency=5.000e-01	polymorphism_score=29.6	prediction=polymorphism	ref_cov=4/11	total_cov=11/19
RA	4117	.	1	351493	0	T	.	bias_e_value=1706530	bias_p_value=0.809109	consensus_reject=FREQUENCY_CUTOFF	consensus_score=35.7	fisher_strand_p_value=0.449725	frequency=5.000e-01	ks_quality_p_value=1	major_base=T	major_cov=7/8	major_frequency=5.000e-01	minor_base=.	minor_cov=4/11	new_cov=4/11	polymorphism_frequency=5.000e-01	polymorphism_score=52.0	prediction=polymorphism	ref_cov=7/8	total_cov=11/19
RA	4118	.	1	351494	0	T	.	bias_e_value=1706530	bias_p_value=0.809109	consensus_reject=FREQUENCY_CUTOFF	consensus_score=36.0	fisher_strand_p_value=0.449725	frequency=5.000e-01	ks_quality_p_value=1	major_base=T	major_cov=7/8	major_frequency=5.000e-01	minor_base=.	minor_cov=4/11	new_cov=4/11	polymorphism_frequency=5.000e-01	polymorphism_score=52.0	prediction=polymorphism	ref_cov=7/8	total_cov=11/19
RA	4119	.	1	351516	0	G	A	bias_e_value=32.2787	bias_p_value=1.53042e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=40.3	fisher_strand_p_value=0.0809405	frequency=3.333e-01	ks_quality_p_value=1.27923e-05	major_base=G	major_cov=10/30	major_frequency=6.667e-01	minor_base=A	minor_cov=10/10	new_cov=10/10	polymorphism_frequency=3.333e-01	polymorphism_score=34.3	prediction=polymorphism	ref_cov=10/30	total_cov=20/40
RA	4120	.	1	351526	0	A	G	consensus_score=163.8	frequency=1	major_base=G	major_cov=21/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/43
RA	4121	.	1	351534	0	G	A	consensus_score=172.7	frequency=1	major_base=A	major_cov=23/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/46
RA	4122	.	1	351540	0	T	C	bias_e_value=16146.6	bias_p_value=0.00765552	consensus_reject=FREQUENCY_CUTOFF	consensus_score=48.6	fisher_strand_p_value=0.125029	frequency=6.486e-01	ks_quality_p_value=0.00770686	major_base=C	major_cov=13/35	major_frequency=6.486e-01	minor_base=T	minor_cov=12/14	new_cov=13/35	polymorphism_frequency=6.486e-01	polymorphism_score=47.0	prediction=polymorphism	ref_cov=12/14	total_cov=25/49
RA	4123	.	1	351543	0	T	.	bias_e_value=11.7084	bias_p_value=5.55128e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=24.1	fisher_strand_p_value=0.0844556	frequency=6.234e-01	ks_quality_p_value=4.14293e-06	major_base=.	major_cov=13/35	major_frequency=6.234e-01	minor_base=T	minor_cov=14/15	new_cov=13/35	polymorphism_frequency=6.234e-01	polymorphism_score=118.9	prediction=polymorphism	ref_cov=14/15	total_cov=27/50
RA	4124	.	1	351587	0	C	T	bias_e_value=298.673	bias_p_value=0.000141609	consensus_reject=FREQUENCY_CUTOFF	consensus_score=101.0	fisher_strand_p_value=0.224742	frequency=2.688e-01	ks_quality_p_value=5.09029e-05	major_base=C	major_cov=22/46	major_frequency=7.312e-01	minor_base=T	minor_cov=12/13	new_cov=12/13	polymorphism_frequency=2.688e-01	polymorphism_score=41.2	prediction=polymorphism	ref_cov=22/46	total_cov=34/59
RA	4125	.	1	351601	0	G	A	bias_e_value=1061450	bias_p_value=0.503264	consensus_reject=FREQUENCY_CUTOFF	consensus_score=133.0	fisher_strand_p_value=0.189804	frequency=2.198e-01	ks_quality_p_value=0.993828	major_base=G	major_cov=23/48	major_frequency=7.802e-01	minor_base=A	minor_cov=10/10	new_cov=10/10	polymorphism_frequency=2.198e-01	polymorphism_score=30.4	prediction=polymorphism	ref_cov=23/48	total_cov=33/58
RA	4126	.	1	352492	0	G	A	consensus_score=307.9	frequency=1	major_base=A	major_cov=48/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/64
RA	4127	.	1	352721	0	A	G	consensus_score=248.3	frequency=1	major_base=G	major_cov=48/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/42
RA	4128	.	1	357096	0	G	A	consensus_score=265.7	frequency=1	major_base=A	major_cov=47/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/51
RA	4129	.	1	357595	0	C	A	consensus_score=297.4	frequency=1	major_base=A	major_cov=49/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/58
RA	4130	.	1	357833	0	C	T	consensus_score=249.6	frequency=1	major_base=T	major_cov=47/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/42
RA	4131	.	1	358071	0	G	A	consensus_score=252.0	frequency=1	major_base=A	major_cov=48/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/44
RA	4132	.	1	358658	0	T	G	consensus_score=275.3	frequency=1	major_base=G	major_cov=43/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/61
RA	4133	.	1	359223	0	T	C	bias_e_value=1.01767e-10	bias_p_value=4.82505e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=171.1	fisher_strand_p_value=1.14026e-18	frequency=2.816e-01	ks_quality_p_value=1	major_base=T	major_cov=8/66	major_frequency=7.184e-01	minor_base=C	minor_cov=29/0	new_cov=29/0	polymorphism_frequency=2.816e-01	polymorphism_score=14.5	prediction=polymorphism	ref_cov=8/66	total_cov=37/66
RA	4134	.	1	359746	0	G	A	bias_e_value=2109140	bias_p_value=1	consensus_score=272.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.99981	major_base=A	major_cov=44/58	major_frequency=9.903e-01	minor_base=G	minor_cov=0/1	new_cov=44/58	polymorphism_frequency=9.903e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=44/59
RA	4135	.	1	360132	0	T	G	consensus_score=291.9	frequency=1	major_base=G	major_cov=52/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/51
RA	4136	.	1	362963	0	A	G	consensus_score=300.3	frequency=1	major_base=G	major_cov=51/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/56
RA	4137	.	1	363893	0	A	G	consensus_score=301.1	frequency=1	major_base=G	major_cov=64/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/44
RA	4138	.	1	370437	0	A	C	consensus_score=213.3	frequency=1	major_base=C	major_cov=45/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/29
RA	4139	.	1	371255	0	A	G	consensus_score=216.9	frequency=1	major_base=G	major_cov=37/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/41
RA	4140	.	1	371880	0	C	T	consensus_score=182.5	frequency=1	major_base=T	major_cov=36/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/29
RA	4141	.	1	372028	0	A	G	consensus_score=83.7	frequency=1	major_base=G	major_cov=24/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/8
RA	4142	.	1	374046	0	C	T	consensus_score=332.0	frequency=1	major_base=T	major_cov=51/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/64
RA	4143	.	1	374886	0	A	G	consensus_score=321.6	frequency=1	major_base=G	major_cov=59/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/56
RA	4144	.	1	375593	0	C	T	consensus_score=180.9	frequency=1	major_base=T	major_cov=37/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/30
RA	4145	.	1	376377	0	A	C	bias_e_value=5.68698e-07	bias_p_value=2.69634e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=230.5	fisher_strand_p_value=8.06038e-15	frequency=3.252e-01	ks_quality_p_value=1	major_base=A	major_cov=57/26	major_frequency=6.748e-01	minor_base=C	minor_cov=0/40	new_cov=0/40	polymorphism_frequency=3.252e-01	polymorphism_score=11.3	prediction=polymorphism	ref_cov=57/26	total_cov=57/66
RA	4146	.	1	376440	0	A	C	bias_e_value=6.11177e-06	bias_p_value=2.89775e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=212.9	fisher_strand_p_value=9.34725e-14	frequency=2.683e-01	ks_quality_p_value=1	major_base=A	major_cov=63/27	major_frequency=7.317e-01	minor_base=C	minor_cov=0/33	new_cov=0/33	polymorphism_frequency=2.683e-01	polymorphism_score=18.0	prediction=polymorphism	ref_cov=63/27	total_cov=63/60
RA	4147	.	1	376653	1	.	A	bias_e_value=1760310	bias_p_value=0.83461	consensus_score=264.9	fisher_strand_p_value=0.525142	frequency=1	ks_quality_p_value=0.920044	major_base=A	major_cov=59/37	major_frequency=9.796e-01	minor_base=.	minor_cov=2/0	new_cov=59/37	polymorphism_frequency=9.796e-01	polymorphism_score=-1.8	prediction=consensus	ref_cov=2/0	total_cov=61/37
RA	4148	.	1	376724	0	C	T	consensus_score=245.5	frequency=1	major_base=T	major_cov=50/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/40
RA	4149	.	1	377702	0	A	C	bias_e_value=1232250	bias_p_value=0.584243	consensus_reject=FREQUENCY_CUTOFF	consensus_score=154.7	fisher_strand_p_value=0.241218	frequency=2.604e-01	ks_quality_p_value=1	major_base=A	major_cov=37/34	major_frequency=7.396e-01	minor_base=C	minor_cov=17/8	new_cov=17/8	polymorphism_frequency=2.604e-01	polymorphism_score=10.6	prediction=polymorphism	ref_cov=37/34	total_cov=54/42
RA	4150	.	1	378411	0	C	T	consensus_score=290.1	frequency=1	major_base=T	major_cov=51/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/56
RA	4151	.	1	379751	0	C	T	consensus_score=297.1	frequency=1	major_base=T	major_cov=52/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/55
RA	4152	.	1	380711	0	G	A	consensus_score=332.8	frequency=1	major_base=A	major_cov=51/70	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/70	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/70
RA	4153	.	1	381685	0	C	T	consensus_score=305.2	frequency=1	major_base=T	major_cov=46/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/60
RA	4154	.	1	381797	0	A	G	consensus_score=253.7	frequency=1	major_base=G	major_cov=46/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/42
RA	4155	.	1	382045	0	C	A	consensus_score=321.9	frequency=1	major_base=A	major_cov=50/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/66
RA	4156	.	1	382285	0	C	A	bias_e_value=0.0738994	bias_p_value=3.50377e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=173.7	fisher_strand_p_value=1.65102e-09	frequency=2.174e-01	ks_quality_p_value=1	major_base=C	major_cov=20/52	major_frequency=7.826e-01	minor_base=A	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.174e-01	polymorphism_score=12.9	prediction=polymorphism	ref_cov=20/52	total_cov=40/52
RA	4157	.	1	382310	0	T	A	bias_e_value=0.000731713	bias_p_value=3.46924e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=186.8	fisher_strand_p_value=1.33219e-11	frequency=2.418e-01	ks_quality_p_value=1	major_base=T	major_cov=15/54	major_frequency=7.582e-01	minor_base=A	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.418e-01	polymorphism_score=11.0	prediction=polymorphism	ref_cov=15/54	total_cov=37/54
RA	4158	.	1	382321	0	G	A	bias_e_value=5.84942e-12	bias_p_value=2.77337e-18	consensus_reject=FREQUENCY_CUTOFF	consensus_score=96.2	fisher_strand_p_value=6.13055e-20	frequency=3.483e-01	ks_quality_p_value=1	major_base=G	major_cov=4/54	major_frequency=6.517e-01	minor_base=A	minor_cov=31/0	new_cov=31/0	polymorphism_frequency=3.483e-01	polymorphism_score=31.3	prediction=polymorphism	ref_cov=4/54	total_cov=36/54
RA	4159	.	1	382343	0	T	A	bias_e_value=8.21315e-05	bias_p_value=3.89407e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=201.5	fisher_strand_p_value=1.3754e-12	frequency=2.371e-01	ks_quality_p_value=1	major_base=T	major_cov=15/59	major_frequency=7.629e-01	minor_base=A	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.371e-01	polymorphism_score=10.8	prediction=polymorphism	ref_cov=15/59	total_cov=38/59
RA	4160	.	1	382776	0	G	A	consensus_score=210.8	frequency=1	major_base=A	major_cov=34/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/41
RA	4161	.	1	383407	0	A	C	consensus_score=276.3	frequency=1	major_base=C	major_cov=53/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/48
RA	4162	.	1	383554	0	A	G	bias_e_value=2109140	bias_p_value=1	consensus_score=322.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=56/59	major_frequency=9.914e-01	minor_base=A	minor_cov=0/1	new_cov=56/59	polymorphism_frequency=9.914e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=56/60
RA	4163	.	1	383988	0	T	C	consensus_score=236.1	frequency=1	major_base=C	major_cov=35/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/48
RA	4164	.	1	384273	0	C	A	consensus_score=265.2	frequency=1	major_base=A	major_cov=48/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/47
RA	4165	.	1	386322	0	G	C	consensus_score=239.6	frequency=1	major_base=C	major_cov=46/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/38
RA	4166	.	1	386428	0	T	G	consensus_score=274.4	frequency=1	major_base=G	major_cov=46/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/56
RA	4167	.	1	387111	0	G	A	consensus_score=157.8	frequency=1	major_base=A	major_cov=32/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/24
RA	4168	.	1	387403	0	G	T	consensus_score=312.7	frequency=1	major_base=T	major_cov=54/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/58
RA	4169	.	1	388577	0	T	C	consensus_score=296.6	frequency=1	major_base=C	major_cov=47/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/54
RA	4170	.	1	389044	1	.	A	consensus_score=325.3	frequency=1	major_base=A	major_cov=72/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=72/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=72/49
RA	4171	.	1	389289	0	G	T	consensus_score=310.0	frequency=1	major_base=T	major_cov=56/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/58
RA	4172	.	1	390416	0	G	A	bias_e_value=0.0118783	bias_p_value=5.6318e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=148.4	fisher_strand_p_value=2.43419e-10	frequency=2.198e-01	ks_quality_p_value=1	major_base=G	major_cov=54/17	major_frequency=7.802e-01	minor_base=A	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.198e-01	polymorphism_score=10.1	prediction=polymorphism	ref_cov=54/17	total_cov=54/37
RA	4173	.	1	390467	0	T	C	bias_e_value=1.34174e-08	bias_p_value=6.36156e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=120.3	fisher_strand_p_value=1.70516e-16	frequency=2.874e-01	ks_quality_p_value=1	major_base=T	major_cov=56/6	major_frequency=7.126e-01	minor_base=C	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.874e-01	polymorphism_score=19.6	prediction=polymorphism	ref_cov=56/6	total_cov=56/31
RA	4174	.	1	392968	0	A	G	consensus_score=266.6	frequency=1	major_base=G	major_cov=51/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/47
RA	4175	.	1	394458	0	A	G	consensus_score=342.3	frequency=1	major_base=G	major_cov=59/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/58
RA	4176	.	1	395485	0	A	G	consensus_score=159.3	frequency=1	major_base=G	major_cov=46/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/9
RA	4177	.	1	397330	0	A	G	consensus_score=208.7	frequency=1	major_base=G	major_cov=38/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/44
RA	4178	.	1	397685	0	G	A	consensus_score=362.8	frequency=1	major_base=A	major_cov=72/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=72/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=72/59
RA	4179	.	1	398125	0	C	T	consensus_score=348.9	frequency=1	major_base=T	major_cov=60/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/62
RA	4180	.	1	400202	0	C	A	consensus_score=331.5	frequency=1	major_base=A	major_cov=54/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/62
RA	4181	.	1	403510	0	A	C	bias_e_value=1738970	bias_p_value=0.82449	consensus_score=252.4	fisher_strand_p_value=0.494624	frequency=1	ks_quality_p_value=0.949225	major_base=C	major_cov=46/45	major_frequency=9.785e-01	minor_base=T	minor_cov=0/2	new_cov=46/45	polymorphism_frequency=9.785e-01	polymorphism_score=-5.4	prediction=consensus	ref_cov=0/0	total_cov=46/47
RA	4182	.	1	403901	0	A	G	consensus_score=406.8	frequency=1	major_base=G	major_cov=77/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=77/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=77/67
RA	4183	.	1	405979	0	T	C	consensus_score=339.1	frequency=1	major_base=C	major_cov=51/71	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/71	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/71
RA	4184	.	1	406763	0	T	C	consensus_score=311.8	frequency=1	major_base=C	major_cov=53/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/59
RA	4185	.	1	407208	0	G	T	consensus_score=348.6	frequency=1	major_base=T	major_cov=62/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/66
RA	4186	.	1	407309	0	T	C	consensus_score=362.9	frequency=1	major_base=C	major_cov=66/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/60
RA	4187	.	1	409174	0	G	A	bias_e_value=1510340	bias_p_value=0.71609	consensus_score=313.3	fisher_strand_p_value=0.418182	frequency=1	ks_quality_p_value=0.833892	major_base=A	major_cov=45/64	major_frequency=9.909e-01	minor_base=.	minor_cov=1/0	new_cov=45/64	polymorphism_frequency=9.909e-01	polymorphism_score=-3.7	prediction=consensus	ref_cov=0/0	total_cov=46/64
RA	4188	.	1	409805	0	A	G	consensus_score=415.3	frequency=1	major_base=G	major_cov=67/76	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=67/76	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/76
RA	4189	.	1	410068	0	A	G	consensus_score=428.4	frequency=1	major_base=G	major_cov=77/78	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=77/78	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=77/78
RA	4190	.	1	410245	0	T	C	bias_e_value=1757740	bias_p_value=0.83339	consensus_score=364.9	fisher_strand_p_value=0.481481	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=64/70	major_frequency=9.926e-01	minor_base=G	minor_cov=1/0	new_cov=64/70	polymorphism_frequency=9.926e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/70
RA	4191	.	1	410666	0	A	G	bias_e_value=2105350	bias_p_value=0.998203	consensus_score=363.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.94065	major_base=G	major_cov=66/65	major_frequency=9.924e-01	minor_base=C	minor_cov=1/0	new_cov=66/65	polymorphism_frequency=9.924e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=0/0	total_cov=67/65
RA	4192	.	1	416916	0	C	T	consensus_score=11.8	deleted=1	frequency=1	major_base=T	major_cov=3/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/4
RA	4193	.	1	418354	0	C	A	consensus_score=323.7	frequency=1	major_base=A	major_cov=55/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/57
RA	4194	.	1	419361	0	G	T	consensus_score=273.9	frequency=1	major_base=T	major_cov=55/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/44
RA	4195	.	1	420270	0	A	G	consensus_score=294.3	frequency=1	major_base=G	major_cov=52/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/51
RA	4196	.	1	421899	0	C	G	consensus_score=331.1	frequency=1	major_base=G	major_cov=59/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/58
RA	4197	.	1	422310	0	T	C	consensus_score=273.6	frequency=1	major_base=C	major_cov=51/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/50
RA	4198	.	1	423316	0	T	A	consensus_score=246.1	frequency=1	major_base=A	major_cov=56/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/35
RA	4199	.	1	428684	0	A	.	bias_e_value=2109130	bias_p_value=0.999992	consensus_score=561.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.996028	major_base=.	major_cov=67/67	major_frequency=9.926e-01	minor_base=A	minor_cov=1/0	new_cov=67/67	polymorphism_frequency=9.926e-01	polymorphism_score=-3.5	prediction=consensus	ref_cov=1/0	total_cov=68/67
RA	4200	.	1	428979	0	T	A	consensus_score=270.0	frequency=1	major_base=A	major_cov=42/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/57
RA	4201	.	1	429002	0	C	T	consensus_score=243.8	frequency=1	major_base=T	major_cov=35/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/56
RA	4202	.	1	429017	0	A	G	consensus_score=256.5	frequency=1	major_base=G	major_cov=36/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/53
RA	4203	.	1	429025	0	C	T	consensus_score=221.4	frequency=1	major_base=T	major_cov=33/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/49
RA	4204	.	1	429027	0	C	T	consensus_score=221.6	frequency=1	major_base=T	major_cov=33/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/49
RA	4205	.	1	429034	0	T	.	consensus_score=338.5	frequency=1	major_base=.	major_cov=31/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/48
RA	4206	.	1	429058	0	C	T	consensus_score=195.3	frequency=1	major_base=T	major_cov=32/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/40
RA	4207	.	1	429168	0	G	A	consensus_score=277.2	frequency=1	major_base=A	major_cov=55/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/48
RA	4208	.	1	429186	0	T	C	consensus_score=279.4	frequency=1	major_base=C	major_cov=51/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/44
RA	4209	.	1	429188	0	C	T	consensus_score=255.0	frequency=1	major_base=T	major_cov=51/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/44
RA	4210	.	1	429189	0	A	G	consensus_score=277.7	frequency=1	major_base=G	major_cov=51/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/44
RA	4211	.	1	429191	0	A	T	consensus_score=268.5	frequency=1	major_base=T	major_cov=51/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/44
RA	4212	.	1	429209	0	C	T	consensus_score=267.3	frequency=1	major_base=T	major_cov=50/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/44
RA	4213	.	1	429210	0	T	G	consensus_score=271.1	frequency=1	major_base=G	major_cov=50/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/44
RA	4214	.	1	429216	0	G	A	consensus_score=272.9	frequency=1	major_base=A	major_cov=51/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/44
RA	4215	.	1	429225	0	T	C	consensus_score=273.1	frequency=1	major_base=C	major_cov=49/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/45
RA	4216	.	1	429230	0	C	T	consensus_score=244.1	frequency=1	major_base=T	major_cov=47/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/43
RA	4217	.	1	429232	0	G	A	consensus_score=244.5	frequency=1	major_base=A	major_cov=47/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/43
RA	4218	.	1	429249	0	A	C	bias_e_value=2109140	bias_p_value=1	consensus_score=240.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=46/37	major_frequency=9.881e-01	minor_base=T	minor_cov=1/0	new_cov=46/37	polymorphism_frequency=9.881e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/37
RA	4219	.	1	429250	0	G	T	consensus_score=238.3	frequency=1	major_base=T	major_cov=47/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/37
RA	4220	.	1	429255	0	A	G	consensus_score=232.1	frequency=1	major_base=G	major_cov=47/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/37
RA	4221	.	1	429275	0	G	A	consensus_score=241.5	frequency=1	major_base=A	major_cov=46/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/44
RA	4222	.	1	429279	0	T	C	consensus_score=255.7	frequency=1	major_base=C	major_cov=46/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/44
RA	4223	.	1	438673	0	C	T	consensus_score=308.7	frequency=1	major_base=T	major_cov=38/70	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/70	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/70
RA	4224	.	1	438677	0	T	G	consensus_score=298.6	frequency=1	major_base=G	major_cov=38/70	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/70	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/70
RA	4225	.	1	439186	0	T	C	consensus_score=377.3	frequency=1	major_base=C	major_cov=62/68	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/68	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/68
RA	4226	.	1	439377	0	A	G	consensus_score=400.5	frequency=1	major_base=G	major_cov=65/72	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/72	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/72
RA	4227	.	1	441638	0	G	A	consensus_score=311.3	frequency=1	major_base=A	major_cov=53/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/62
RA	4228	.	1	441897	0	G	A	consensus_score=418.1	frequency=1	major_base=A	major_cov=77/71	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=77/71	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=77/71
RA	4229	.	1	443559	0	A	G	consensus_score=410.0	frequency=1	major_base=G	major_cov=74/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=74/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=74/67
RA	4230	.	1	443614	0	T	G	consensus_score=441.6	frequency=1	major_base=G	major_cov=80/75	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=80/75	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=80/75
RA	4231	.	1	444008	0	A	G	consensus_score=361.5	frequency=1	major_base=G	major_cov=46/82	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/82	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/82
RA	4232	.	1	444107	0	A	G	bias_e_value=1603350	bias_p_value=0.760192	consensus_score=328.2	fisher_strand_p_value=0.393162	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=45/71	major_frequency=9.915e-01	minor_base=T	minor_cov=1/0	new_cov=45/71	polymorphism_frequency=9.915e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/71
RA	4233	.	1	444250	0	G	T	bias_e_value=2109140	bias_p_value=1	consensus_score=376.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999571	major_base=T	major_cov=66/70	major_frequency=9.927e-01	minor_base=G	minor_cov=0/1	new_cov=66/70	polymorphism_frequency=9.927e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=66/71
RA	4234	.	1	444944	0	T	C	consensus_score=491.9	frequency=1	major_base=C	major_cov=92/85	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=92/85	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=92/85
RA	4235	.	1	445015	0	T	G	consensus_score=516.4	frequency=1	major_base=G	major_cov=92/92	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=92/92	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=92/92
RA	4236	.	1	445362	0	A	G	consensus_score=232.6	frequency=1	major_base=G	major_cov=37/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/44
RA	4237	.	1	445634	0	G	A	consensus_score=79.0	frequency=1	major_base=A	major_cov=10/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/20
RA	4238	.	1	445701	0	A	C	consensus_score=94.0	frequency=1	major_base=C	major_cov=11/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/22
RA	4239	.	1	445967	0	A	.	consensus_score=151.2	frequency=1	major_base=.	major_cov=25/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/11
RA	4240	.	1	446792	0	C	A	consensus_score=224.1	frequency=1	major_base=A	major_cov=45/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/40
RA	4241	.	1	446860	0	C	T	consensus_score=175.6	frequency=1	major_base=T	major_cov=30/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/36
RA	4242	.	1	447321	0	G	T	consensus_score=398.0	frequency=1	major_base=T	major_cov=66/78	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/78	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/78
RA	4243	.	1	447408	0	G	A	consensus_score=416.7	frequency=1	major_base=A	major_cov=65/82	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/82	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/82
RA	4244	.	1	448798	0	A	G	consensus_score=334.5	frequency=1	major_base=G	major_cov=38/81	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/81	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/81
RA	4245	.	1	449163	0	T	C	consensus_score=411.3	frequency=1	major_base=C	major_cov=80/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=80/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=80/66
RA	4246	.	1	450548	0	T	C	consensus_score=399.3	frequency=1	major_base=C	major_cov=77/71	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=77/71	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=77/71
RA	4247	.	1	450944	0	A	C	consensus_score=335.8	frequency=1	major_base=C	major_cov=56/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/64
RA	4248	.	1	451383	0	G	A	consensus_score=311.6	frequency=1	major_base=A	major_cov=51/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/62
RA	4249	.	1	453107	0	A	C	bias_e_value=2109140	bias_p_value=1	consensus_score=327.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=59/59	major_frequency=9.916e-01	minor_base=T	minor_cov=1/0	new_cov=59/59	polymorphism_frequency=9.916e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/59
RA	4250	.	1	453189	0	A	G	consensus_score=375.1	frequency=1	major_base=G	major_cov=66/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/64
RA	4251	.	1	453416	0	A	C	consensus_score=231.9	frequency=1	major_base=C	major_cov=38/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/44
RA	4252	.	1	454099	0	T	C	consensus_score=277.6	frequency=1	major_base=C	major_cov=42/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/54
RA	4253	.	1	454354	0	G	A	consensus_score=173.5	frequency=1	major_base=A	major_cov=35/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/30
RA	4254	.	1	454398	0	G	C	consensus_score=230.2	frequency=1	major_base=C	major_cov=47/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/36
RA	4255	.	1	454571	0	G	A	consensus_score=330.0	frequency=1	major_base=A	major_cov=62/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/55
RA	4256	.	1	458613	0	A	G	consensus_score=185.6	frequency=1	major_base=G	major_cov=64/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/5
RA	4257	.	1	458706	0	C	T	consensus_score=283.1	frequency=1	major_base=T	major_cov=70/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=70/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=70/32
RA	4258	.	1	458820	0	G	A	bias_e_value=273243	bias_p_value=0.129552	consensus_score=276.7	fisher_strand_p_value=0.0284025	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=52/52	major_frequency=9.455e-01	minor_base=C	minor_cov=0/6	new_cov=52/52	polymorphism_frequency=9.455e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/58
RA	4259	.	1	459538	0	A	G	consensus_score=300.9	frequency=1	major_base=G	major_cov=47/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/61
RA	4260	.	1	459595	0	C	T	consensus_score=251.0	frequency=1	major_base=T	major_cov=35/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/52
RA	4261	.	1	459961	0	G	T	consensus_score=191.1	frequency=1	major_base=T	major_cov=29/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/39
RA	4262	.	1	460135	0	T	G	consensus_score=179.8	frequency=1	major_base=G	major_cov=29/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/37
RA	4263	.	1	460204	0	A	T	bias_e_value=0.100121	bias_p_value=4.74701e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=175.8	fisher_strand_p_value=2.27096e-09	frequency=2.222e-01	ks_quality_p_value=1	major_base=A	major_cov=15/48	major_frequency=7.778e-01	minor_base=T	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.222e-01	polymorphism_score=13.8	prediction=polymorphism	ref_cov=15/48	total_cov=33/48
RA	4264	.	1	460256	0	A	G	consensus_score=259.9	frequency=1	major_base=G	major_cov=38/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/59
RA	4265	.	1	461095	0	G	T	consensus_score=198.2	frequency=1	major_base=T	major_cov=32/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/38
RA	4266	.	1	461297	0	A	G	consensus_score=162.7	frequency=1	major_base=G	major_cov=31/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/28
RA	4267	.	1	461306	1	.	A	consensus_score=154.1	frequency=1	major_base=A	major_cov=30/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/28
RA	4268	.	1	461778	0	T	C	consensus_score=306.4	frequency=1	major_base=C	major_cov=42/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/64
RA	4269	.	1	461910	0	T	C	bias_e_value=1761410	bias_p_value=0.835131	consensus_score=255.8	fisher_strand_p_value=0.483871	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=44/48	major_frequency=9.892e-01	minor_base=T	minor_cov=1/0	new_cov=44/48	polymorphism_frequency=9.892e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=45/48
RA	4270	.	1	462468	0	A	G	consensus_score=101.8	frequency=1	major_base=G	major_cov=32/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/11
RA	4271	.	1	463863	0	T	C	consensus_score=224.3	frequency=1	major_base=C	major_cov=45/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/36
RA	4272	.	1	464458	0	A	G	bias_e_value=2109140	bias_p_value=1	consensus_score=219.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=44/45	major_frequency=9.889e-01	minor_base=C	minor_cov=0/1	new_cov=44/45	polymorphism_frequency=9.889e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/46
RA	4273	.	1	466142	0	G	A	consensus_score=84.7	frequency=1	major_base=A	major_cov=16/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/17
RA	4274	.	1	466200	0	T	C	consensus_score=133.4	frequency=1	major_base=C	major_cov=24/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/23
RA	4275	.	1	466293	0	G	A	consensus_score=172.4	frequency=1	major_base=A	major_cov=27/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/37
RA	4276	.	1	466823	0	C	T	consensus_score=232.4	frequency=1	major_base=T	major_cov=46/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/39
RA	4277	.	1	468483	0	A	G	consensus_score=142.3	frequency=1	major_base=G	major_cov=13/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/38
RA	4278	.	1	468737	0	G	C	consensus_score=86.5	frequency=1	major_base=C	major_cov=21/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/12
RA	4279	.	1	469120	0	C	T	consensus_score=248.8	frequency=1	major_base=T	major_cov=41/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/46
RA	4280	.	1	469180	0	C	T	consensus_score=244.1	frequency=1	major_base=T	major_cov=46/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/47
RA	4281	.	1	470044	0	A	C	consensus_score=215.1	frequency=1	major_base=C	major_cov=31/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/48
RA	4282	.	1	470338	0	A	G	consensus_score=259.5	frequency=1	major_base=G	major_cov=40/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/54
RA	4283	.	1	470809	0	G	A	bias_e_value=2109140	bias_p_value=1	consensus_score=259.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=42/49	major_frequency=9.891e-01	minor_base=T	minor_cov=0/1	new_cov=42/49	polymorphism_frequency=9.891e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/50
RA	4284	.	1	471767	0	A	G	consensus_score=256.0	frequency=1	major_base=G	major_cov=41/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/53
RA	4285	.	1	472167	0	C	T	consensus_score=154.8	frequency=1	major_base=T	major_cov=32/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/26
RA	4286	.	1	472906	0	C	T	consensus_score=186.9	frequency=1	major_base=T	major_cov=27/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/43
RA	4287	.	1	473306	0	G	C	consensus_score=228.5	frequency=1	major_base=C	major_cov=44/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/35
RA	4288	.	1	473972	0	G	A	consensus_score=226.9	frequency=1	major_base=A	major_cov=38/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/45
RA	4289	.	1	474140	0	A	G	consensus_score=295.6	frequency=1	major_base=G	major_cov=43/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/64
RA	4290	.	1	474322	0	A	G	consensus_score=261.0	frequency=1	major_base=G	major_cov=34/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/57
RA	4291	.	1	474516	0	A	C	consensus_score=236.9	frequency=1	major_base=C	major_cov=40/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/46
RA	4292	.	1	475965	0	A	C	consensus_score=228.9	frequency=1	major_base=C	major_cov=41/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/42
RA	4293	.	1	475995	0	T	G	consensus_score=228.0	frequency=1	major_base=G	major_cov=40/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/40
RA	4294	.	1	476085	0	A	G	consensus_score=258.5	frequency=1	major_base=G	major_cov=43/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/47
RA	4295	.	1	476130	0	T	C	consensus_score=272.1	frequency=1	major_base=C	major_cov=47/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/50
RA	4296	.	1	476958	0	G	A	consensus_score=257.9	frequency=1	major_base=A	major_cov=49/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/46
RA	4297	.	1	477687	0	A	G	consensus_score=321.8	frequency=1	major_base=G	major_cov=55/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/60
RA	4298	.	1	479513	0	A	G	consensus_score=281.1	frequency=1	major_base=G	major_cov=45/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/52
RA	4299	.	1	480106	0	A	G	consensus_score=171.0	frequency=1	major_base=G	major_cov=31/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/31
RA	4300	.	1	480426	0	A	T	consensus_score=197.5	frequency=1	major_base=T	major_cov=42/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/28
RA	4301	.	1	481115	0	A	G	consensus_score=324.2	frequency=1	major_base=G	major_cov=66/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/51
RA	4302	.	1	481514	0	T	C	bias_e_value=0.000581512	bias_p_value=2.7571e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=58.5	fisher_strand_p_value=1.04911e-11	frequency=3.750e-01	ks_quality_p_value=1	major_base=T	major_cov=33/7	major_frequency=6.250e-01	minor_base=C	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=3.750e-01	polymorphism_score=19.6	prediction=polymorphism	ref_cov=33/7	total_cov=33/31
RA	4303	.	1	481951	0	A	G	bias_e_value=1572240	bias_p_value=0.745441	consensus_score=237.0	fisher_strand_p_value=0.37931	frequency=1	ks_quality_p_value=0.995732	major_base=G	major_cov=32/54	major_frequency=9.885e-01	minor_base=T	minor_cov=1/0	new_cov=32/54	polymorphism_frequency=9.885e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/54
RA	4304	.	1	482299	0	G	T	consensus_score=304.7	frequency=1	major_base=T	major_cov=53/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/55
RA	4305	.	1	483218	0	T	C	consensus_score=338.3	frequency=1	major_base=C	major_cov=58/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/58
RA	4306	.	1	483879	0	T	C	consensus_score=232.0	frequency=1	major_base=C	major_cov=30/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/50
RA	4307	.	1	483905	0	G	T	bias_e_value=1.62736e-08	bias_p_value=7.71576e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=179.0	fisher_strand_p_value=2.07919e-16	frequency=2.674e-01	ks_quality_p_value=1	major_base=G	major_cov=5/58	major_frequency=7.326e-01	minor_base=T	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.674e-01	polymorphism_score=11.1	prediction=polymorphism	ref_cov=5/58	total_cov=28/58
RA	4308	.	1	484384	0	A	C	consensus_score=432.7	frequency=1	major_base=C	major_cov=70/82	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=70/82	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=70/82
RA	4309	.	1	484651	0	C	T	consensus_score=397.5	frequency=1	major_base=T	major_cov=62/82	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/82	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/82
RA	4310	.	1	484871	0	C	T	consensus_score=287.7	frequency=1	major_base=T	major_cov=54/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/47
RA	4311	.	1	485840	0	A	G	bias_e_value=0.00971409	bias_p_value=4.6057e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=200.3	fisher_strand_p_value=1.97277e-10	frequency=2.326e-01	ks_quality_p_value=1	major_base=A	major_cov=39/60	major_frequency=7.674e-01	minor_base=G	minor_cov=30/0	new_cov=30/0	polymorphism_frequency=2.326e-01	polymorphism_score=12.1	prediction=polymorphism	ref_cov=39/60	total_cov=71/60
RA	4312	.	1	486259	0	C	T	consensus_score=341.3	frequency=1	major_base=T	major_cov=54/71	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/71	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/71
RA	4313	.	1	486387	0	C	A	bias_e_value=2109140	bias_p_value=1	consensus_score=298.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999853	major_base=A	major_cov=58/58	major_frequency=9.915e-01	minor_base=C	minor_cov=0/1	new_cov=58/58	polymorphism_frequency=9.915e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=58/59
RA	4314	.	1	486437	0	A	C	bias_e_value=5.9397e-08	bias_p_value=2.81617e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=226.2	fisher_strand_p_value=7.8712e-16	frequency=3.077e-01	ks_quality_p_value=1	major_base=A	major_cov=63/27	major_frequency=6.923e-01	minor_base=C	minor_cov=0/40	new_cov=0/40	polymorphism_frequency=3.077e-01	polymorphism_score=17.7	prediction=polymorphism	ref_cov=63/27	total_cov=63/68
RA	4315	.	1	487019	0	G	T	bias_e_value=6.2067e-05	bias_p_value=2.94276e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=168.7	fisher_strand_p_value=1.02884e-12	frequency=2.444e-01	ks_quality_p_value=1	major_base=G	major_cov=12/56	major_frequency=7.556e-01	minor_base=T	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.444e-01	polymorphism_score=20.7	prediction=polymorphism	ref_cov=12/56	total_cov=34/56
RA	4316	.	1	487033	0	C	A	bias_e_value=0.69441	bias_p_value=3.29238e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=177.1	fisher_strand_p_value=1.74535e-08	frequency=2.069e-01	ks_quality_p_value=1	major_base=C	major_cov=20/49	major_frequency=7.931e-01	minor_base=A	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.069e-01	polymorphism_score=10.5	prediction=polymorphism	ref_cov=20/49	total_cov=39/49
RA	4317	.	1	489687	0	A	G	bias_e_value=0.0461489	bias_p_value=2.18804e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=111.8	fisher_strand_p_value=1.00758e-09	frequency=2.192e-01	ks_quality_p_value=1	major_base=A	major_cov=10/47	major_frequency=7.808e-01	minor_base=G	minor_cov=16/0	new_cov=16/0	polymorphism_frequency=2.192e-01	polymorphism_score=12.5	prediction=polymorphism	ref_cov=10/47	total_cov=27/47
RA	4318	.	1	489743	0	C	T	bias_e_value=0.127849	bias_p_value=6.06167e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=125.2	fisher_strand_p_value=2.93597e-09	frequency=2.329e-01	ks_quality_p_value=1	major_base=C	major_cov=12/44	major_frequency=7.671e-01	minor_base=T	minor_cov=17/0	new_cov=17/0	polymorphism_frequency=2.329e-01	polymorphism_score=11.1	prediction=polymorphism	ref_cov=12/44	total_cov=29/44
RA	4319	.	1	490841	0	A	G	bias_e_value=2109080	bias_p_value=0.999972	consensus_score=218.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.9925	major_base=G	major_cov=61/20	major_frequency=9.878e-01	minor_base=A	minor_cov=1/0	new_cov=61/20	polymorphism_frequency=9.878e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=62/20
RA	4320	.	1	490992	0	T	C	consensus_score=331.3	frequency=1	major_base=C	major_cov=50/68	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/68	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/68
RA	4321	.	1	491206	0	T	C	consensus_score=397.1	frequency=1	major_base=C	major_cov=78/72	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=78/72	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=78/72
RA	4322	.	1	491935	0	A	G	consensus_score=301.2	frequency=1	major_base=G	major_cov=66/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/42
RA	4323	.	1	494932	0	A	G	consensus_score=294.0	frequency=1	major_base=G	major_cov=46/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/59
RA	4324	.	1	495428	0	T	C	consensus_score=370.2	frequency=1	major_base=C	major_cov=53/73	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/73	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/73
RA	4325	.	1	497428	0	G	A	consensus_score=217.6	frequency=1	major_base=A	major_cov=44/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/32
RA	4326	.	1	497647	0	C	T	consensus_score=236.7	frequency=1	major_base=T	major_cov=45/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/41
RA	4327	.	1	497862	0	C	T	bias_e_value=1128910	bias_p_value=0.535244	consensus_score=184.5	fisher_strand_p_value=0.215277	frequency=1	ks_quality_p_value=0.968088	major_base=T	major_cov=39/35	major_frequency=9.250e-01	minor_base=C	minor_cov=5/1	new_cov=39/35	polymorphism_frequency=9.250e-01	polymorphism_score=3.0	prediction=consensus	ref_cov=5/1	total_cov=44/36
RA	4328	.	1	499425	0	C	T	bias_e_value=0.00536859	bias_p_value=2.54539e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=180.7	fisher_strand_p_value=1.0621e-10	frequency=2.091e-01	ks_quality_p_value=1	major_base=C	major_cov=62/25	major_frequency=7.909e-01	minor_base=T	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=2.091e-01	polymorphism_score=15.7	prediction=polymorphism	ref_cov=62/25	total_cov=62/48
RA	4329	.	1	499433	0	C	A	bias_e_value=0.00289612	bias_p_value=1.37313e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=240.3	fisher_strand_p_value=5.57972e-11	frequency=2.124e-01	ks_quality_p_value=1	major_base=C	major_cov=63/26	major_frequency=7.876e-01	minor_base=A	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=2.124e-01	polymorphism_score=10.9	prediction=polymorphism	ref_cov=63/26	total_cov=63/50
RA	4330	.	1	499656	0	A	C	consensus_score=297.4	frequency=1	major_base=C	major_cov=42/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/65
RA	4331	.	1	499923	0	T	C	consensus_score=302.8	frequency=1	major_base=C	major_cov=55/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/54
RA	4332	.	1	500200	0	G	A	consensus_score=245.1	frequency=1	major_base=A	major_cov=43/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/44
RA	4333	.	1	500228	0	T	C	consensus_score=212.6	frequency=1	major_base=C	major_cov=35/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/42
RA	4334	.	1	501229	0	C	T	consensus_score=298.6	frequency=1	major_base=T	major_cov=52/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/56
RA	4335	.	1	502111	0	G	A	consensus_score=295.4	frequency=1	major_base=A	major_cov=59/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/50
RA	4336	.	1	503140	0	G	A	bias_e_value=1681420	bias_p_value=0.797204	consensus_score=355.0	fisher_strand_p_value=0.438462	frequency=1	ks_quality_p_value=0.992396	major_base=A	major_cov=56/73	major_frequency=9.923e-01	minor_base=G	minor_cov=1/0	new_cov=56/73	polymorphism_frequency=9.923e-01	polymorphism_score=-5.5	prediction=consensus	ref_cov=1/0	total_cov=57/73
RA	4337	.	1	503678	0	T	C	consensus_score=375.7	frequency=1	major_base=C	major_cov=77/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=77/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=77/57
RA	4338	.	1	504398	0	T	C	consensus_score=309.8	frequency=1	major_base=C	major_cov=55/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/52
RA	4339	.	1	504511	0	G	A	consensus_score=365.7	frequency=1	major_base=A	major_cov=58/71	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/71	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/71
RA	4340	.	1	504596	0	C	T	consensus_score=379.4	frequency=1	major_base=T	major_cov=69/69	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=69/69	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=69/69
RA	4341	.	1	504748	0	A	C	consensus_score=292.3	frequency=1	major_base=C	major_cov=48/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/56
RA	4342	.	1	507024	0	G	A	consensus_score=286.5	frequency=1	major_base=A	major_cov=51/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/52
RA	4343	.	1	507271	0	T	G	consensus_score=438.2	frequency=1	major_base=G	major_cov=83/73	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=83/73	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=83/73
RA	4344	.	1	508521	0	T	G	consensus_score=321.3	frequency=1	major_base=G	major_cov=58/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/58
RA	4345	.	1	508578	0	T	G	consensus_score=445.2	frequency=1	major_base=G	major_cov=74/80	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=74/80	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=74/80
RA	4346	.	1	508920	0	A	G	consensus_score=382.1	frequency=1	major_base=G	major_cov=66/70	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/70	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/70
RA	4347	.	1	509011	0	T	C	consensus_score=385.6	frequency=1	major_base=C	major_cov=59/72	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/72	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/72
RA	4348	.	1	509651	0	C	T	bias_e_value=1699040	bias_p_value=0.805561	consensus_score=351.1	fisher_strand_p_value=0.445312	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=56/71	major_frequency=9.922e-01	minor_base=C	minor_cov=1/0	new_cov=56/71	polymorphism_frequency=9.922e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=59/71
RA	4349	.	1	509808	0	G	T	consensus_score=343.2	frequency=1	major_base=T	major_cov=55/68	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/68	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/68
RA	4350	.	1	510314	0	T	C	consensus_score=311.0	frequency=1	major_base=C	major_cov=54/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/56
RA	4351	.	1	511992	0	A	G	consensus_score=398.8	frequency=1	major_base=G	major_cov=66/72	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/72	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/72
RA	4352	.	1	512350	0	A	G	consensus_score=299.8	frequency=1	major_base=G	major_cov=42/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/65
RA	4353	.	1	513510	0	T	G	bias_e_value=3.29965e-10	bias_p_value=1.56445e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=259.3	fisher_strand_p_value=3.80552e-18	frequency=2.778e-01	ks_quality_p_value=1	major_base=T	major_cov=18/73	major_frequency=7.222e-01	minor_base=G	minor_cov=35/0	new_cov=35/0	polymorphism_frequency=2.778e-01	polymorphism_score=10.7	prediction=polymorphism	ref_cov=18/73	total_cov=54/73
RA	4354	.	1	513908	0	T	C	consensus_score=295.3	frequency=1	major_base=C	major_cov=55/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/50
RA	4355	.	1	515003	0	T	C	bias_e_value=1779930	bias_p_value=0.843913	consensus_score=318.0	fisher_strand_p_value=0.496183	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=64/65	major_frequency=9.847e-01	minor_base=A	minor_cov=2/0	new_cov=64/65	polymorphism_frequency=9.847e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/65
RA	4356	.	1	515172	0	C	A	bias_e_value=1224040	bias_p_value=0.580349	consensus_score=292.9	fisher_strand_p_value=0.238491	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=51/55	major_frequency=9.815e-01	minor_base=G	minor_cov=2/0	new_cov=51/55	polymorphism_frequency=9.815e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/55
RA	4357	.	1	515788	0	T	C	consensus_score=332.5	frequency=1	major_base=C	major_cov=62/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/57
RA	4358	.	1	516357	0	G	A	consensus_score=295.0	frequency=1	major_base=A	major_cov=53/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/51
RA	4359	.	1	516701	0	A	G	consensus_score=371.7	frequency=1	major_base=G	major_cov=66/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/67
RA	4360	.	1	517399	0	G	A	consensus_score=347.4	frequency=1	major_base=A	major_cov=54/69	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/69	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/69
RA	4361	.	1	517520	0	T	G	consensus_score=350.4	frequency=1	major_base=G	major_cov=68/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=68/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/52
RA	4362	.	1	517687	0	T	C	bias_e_value=2108170	bias_p_value=0.999541	consensus_score=405.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.969854	major_base=C	major_cov=73/72	major_frequency=9.932e-01	minor_base=T	minor_cov=0/1	new_cov=73/72	polymorphism_frequency=9.932e-01	polymorphism_score=-5.5	prediction=consensus	ref_cov=0/1	total_cov=73/73
RA	4363	.	1	518260	0	T	G	consensus_score=476.4	frequency=1	major_base=G	major_cov=91/78	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=91/78	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=91/78
RA	4364	.	1	519079	0	C	T	consensus_score=381.0	frequency=1	major_base=T	major_cov=62/75	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/75	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/75
RA	4365	.	1	522281	0	A	T	bias_e_value=258.166	bias_p_value=0.000122403	consensus_reject=FREQUENCY_CUTOFF	consensus_score=151.7	fisher_strand_p_value=9.76348e-06	frequency=2.632e-01	ks_quality_p_value=1	major_base=A	major_cov=29/27	major_frequency=7.368e-01	minor_base=T	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.632e-01	polymorphism_score=11.7	prediction=polymorphism	ref_cov=29/27	total_cov=29/48
RA	4366	.	1	522310	0	C	T	bias_e_value=56.6928	bias_p_value=2.68795e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=124.9	fisher_strand_p_value=2.13312e-06	frequency=2.208e-01	ks_quality_p_value=0.888919	major_base=C	major_cov=37/23	major_frequency=7.792e-01	minor_base=T	minor_cov=0/17	new_cov=0/17	polymorphism_frequency=2.208e-01	polymorphism_score=12.3	prediction=polymorphism	ref_cov=37/23	total_cov=37/40
RA	4367	.	1	522393	0	T	C	consensus_score=272.0	frequency=1	major_base=C	major_cov=57/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/40
RA	4368	.	1	522441	0	A	G	consensus_score=281.1	frequency=1	major_base=G	major_cov=60/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/43
RA	4369	.	1	526493	0	T	C	consensus_score=324.1	frequency=1	major_base=C	major_cov=59/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/53
RA	4370	.	1	530977	0	G	A	consensus_score=394.4	frequency=1	major_base=A	major_cov=80/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=80/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=80/62
RA	4371	.	1	533286	0	T	C	bias_e_value=2109140	bias_p_value=1	consensus_score=268.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999781	major_base=C	major_cov=60/35	major_frequency=9.896e-01	minor_base=A	minor_cov=1/0	new_cov=60/35	polymorphism_frequency=9.896e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/35
RA	4372	.	1	534059	1	.	T	bias_e_value=36.9675	bias_p_value=1.75272e-05	consensus_score=232.2	fisher_strand_p_value=1.19761e-06	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=8/71	major_frequency=9.186e-01	minor_base=.	minor_cov=7/0	new_cov=8/71	polymorphism_frequency=9.186e-01	polymorphism_score=14.6	prediction=consensus	ref_cov=7/0	total_cov=15/71
RA	4373	.	1	534212	0	G	A	consensus_score=267.5	frequency=1	major_base=A	major_cov=44/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/53
RA	4374	.	1	534757	0	C	T	consensus_score=346.3	frequency=1	major_base=T	major_cov=55/71	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/71	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/71
RA	4375	.	1	535188	1	.	T	consensus_score=257.4	frequency=1	major_base=T	major_cov=45/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/46
RA	4376	.	1	536398	0	C	G	consensus_score=420.1	frequency=1	major_base=G	major_cov=81/69	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=81/69	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=81/69
RA	4377	.	1	537152	0	T	G	consensus_score=229.9	frequency=1	major_base=G	major_cov=38/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/44
RA	4378	.	1	537897	0	T	C	consensus_score=286.8	frequency=1	major_base=C	major_cov=60/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/40
RA	4379	.	1	539356	0	C	A	consensus_score=299.2	frequency=1	major_base=A	major_cov=60/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/49
RA	4380	.	1	540089	0	G	A	consensus_score=358.6	frequency=1	major_base=A	major_cov=57/68	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/68	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/68
RA	4381	.	1	540664	0	T	C	bias_e_value=150761	bias_p_value=0.0714799	consensus_score=255.8	fisher_strand_p_value=0.0462757	frequency=1	ks_quality_p_value=0.291035	major_base=C	major_cov=61/39	major_frequency=9.346e-01	minor_base=T	minor_cov=7/0	new_cov=61/39	polymorphism_frequency=9.346e-01	polymorphism_score=4.3	prediction=consensus	ref_cov=7/0	total_cov=68/39
RA	4382	.	1	541676	0	A	C	bias_e_value=1.34948e-09	bias_p_value=6.39825e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=252.3	fisher_strand_p_value=1.61304e-17	frequency=2.891e-01	ks_quality_p_value=1	major_base=A	major_cov=70/21	major_frequency=7.109e-01	minor_base=C	minor_cov=0/37	new_cov=0/37	polymorphism_frequency=2.891e-01	polymorphism_score=12.2	prediction=polymorphism	ref_cov=70/21	total_cov=70/58
RA	4383	.	1	543051	0	G	C	consensus_score=379.8	frequency=1	major_base=C	major_cov=68/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=68/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/67
RA	4384	.	1	545733	0	A	.	bias_e_value=1748800	bias_p_value=0.829151	consensus_score=435.2	fisher_strand_p_value=0.475728	frequency=1	ks_quality_p_value=1	major_base=.	major_cov=54/48	major_frequency=9.903e-01	minor_base=A	minor_cov=0/1	new_cov=54/48	polymorphism_frequency=9.903e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=0/1	total_cov=54/49
RA	4385	.	1	546312	0	G	A	consensus_score=297.4	frequency=1	major_base=A	major_cov=63/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/43
RA	4386	.	1	547010	0	T	C	consensus_score=308.0	frequency=1	major_base=C	major_cov=57/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/52
RA	4387	.	1	547485	0	T	C	consensus_score=340.2	frequency=1	major_base=C	major_cov=46/70	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/70	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/70
RA	4388	.	1	547944	0	C	T	consensus_score=298.0	frequency=1	major_base=T	major_cov=55/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/49
RA	4389	.	1	549512	0	C	G	consensus_score=377.2	frequency=1	major_base=G	major_cov=57/73	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/73	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/73
RA	4390	.	1	550922	0	C	T	consensus_score=280.8	frequency=1	major_base=T	major_cov=43/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/62
RA	4391	.	1	551059	0	G	T	consensus_score=384.5	frequency=1	major_base=T	major_cov=74/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=74/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=74/66
RA	4392	.	1	551097	0	G	T	consensus_score=408.5	frequency=1	major_base=T	major_cov=79/74	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=79/74	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=79/74
RA	4393	.	1	552097	0	C	.	bias_e_value=2109140	bias_p_value=1	consensus_score=611.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=.	major_cov=74/71	major_frequency=9.932e-01	minor_base=A	minor_cov=1/0	new_cov=74/71	polymorphism_frequency=9.932e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=0/0	total_cov=75/71
RA	4394	.	1	552673	0	T	C	consensus_score=230.9	frequency=1	major_base=C	major_cov=43/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/38
RA	4395	.	1	552952	0	A	T	consensus_score=195.5	frequency=1	major_base=T	major_cov=46/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/26
RA	4396	.	1	553873	0	G	A	consensus_score=418.2	frequency=1	major_base=A	major_cov=77/71	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=77/71	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=77/71
RA	4397	.	1	554230	0	G	A	consensus_score=305.6	frequency=1	major_base=A	major_cov=62/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/50
RA	4398	.	1	554832	0	T	C	consensus_score=239.5	frequency=1	major_base=C	major_cov=37/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/50
RA	4399	.	1	554853	0	C	T	bias_e_value=0.00219142	bias_p_value=1.03901e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=139.6	fisher_strand_p_value=4.17276e-11	frequency=2.444e-01	ks_quality_p_value=1	major_base=C	major_cov=16/52	major_frequency=7.556e-01	minor_base=T	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.444e-01	polymorphism_score=13.8	prediction=polymorphism	ref_cov=16/52	total_cov=38/52
RA	4400	.	1	554889	0	G	T	bias_e_value=0.000466229	bias_p_value=2.21051e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=192.7	fisher_strand_p_value=8.33836e-12	frequency=2.292e-01	ks_quality_p_value=1	major_base=G	major_cov=16/58	major_frequency=7.708e-01	minor_base=T	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.292e-01	polymorphism_score=16.9	prediction=polymorphism	ref_cov=16/58	total_cov=38/58
RA	4401	.	1	557110	0	T	C	consensus_score=327.8	frequency=1	major_base=C	major_cov=65/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/54
RA	4402	.	1	558033	0	G	A	consensus_score=314.8	frequency=1	major_base=A	major_cov=63/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/52
RA	4403	.	1	558052	1	.	A	consensus_score=306.4	frequency=1	major_base=A	major_cov=67/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=67/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/45
RA	4404	.	1	558082	0	G	T	consensus_score=332.0	frequency=1	major_base=T	major_cov=67/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=67/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/50
RA	4405	.	1	558105	0	T	C	consensus_score=329.6	frequency=1	major_base=C	major_cov=68/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=68/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/49
RA	4406	.	1	558161	0	C	G	consensus_score=312.9	frequency=1	major_base=G	major_cov=63/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/51
RA	4407	.	1	559806	0	T	A	consensus_score=361.2	frequency=1	major_base=A	major_cov=69/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=69/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=69/57
RA	4408	.	1	561217	0	T	C	consensus_score=315.4	frequency=1	major_base=C	major_cov=63/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/46
RA	4409	.	1	561875	0	G	A	consensus_score=254.7	frequency=1	major_base=A	major_cov=49/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/44
RA	4410	.	1	563118	0	A	G	consensus_score=241.2	frequency=1	major_base=G	major_cov=54/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/34
RA	4411	.	1	565662	0	T	C	consensus_score=234.7	frequency=1	major_base=C	major_cov=27/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/56
RA	4412	.	1	565841	0	A	G	consensus_score=279.9	frequency=1	major_base=G	major_cov=50/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/52
RA	4413	.	1	566271	0	A	G	consensus_score=208.2	frequency=1	major_base=G	major_cov=41/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/34
RA	4414	.	1	566288	0	T	C	consensus_score=186.5	frequency=1	major_base=C	major_cov=40/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/28
RA	4415	.	1	569018	0	C	T	consensus_score=260.3	frequency=1	major_base=T	major_cov=48/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/47
RA	4416	.	1	569315	0	T	C	bias_e_value=2104460	bias_p_value=0.99778	consensus_score=277.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.934104	major_base=C	major_cov=38/59	major_frequency=9.898e-01	minor_base=T	minor_cov=0/1	new_cov=38/59	polymorphism_frequency=9.898e-01	polymorphism_score=-5.0	prediction=consensus	ref_cov=0/1	total_cov=38/60
RA	4417	.	1	571287	0	A	C	consensus_score=113.1	frequency=1	major_base=C	major_cov=14/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/26
RA	4418	.	1	571762	0	G	A	consensus_score=211.2	frequency=1	major_base=A	major_cov=32/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/44
RA	4419	.	1	571819	0	T	G	consensus_score=174.0	frequency=1	major_base=G	major_cov=26/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/36
RA	4420	.	1	572184	0	T	C	consensus_score=214.4	frequency=1	major_base=C	major_cov=43/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/31
RA	4421	.	1	572813	0	G	T	consensus_score=245.2	frequency=1	major_base=T	major_cov=43/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/47
RA	4422	.	1	574574	0	A	G	bias_e_value=567445	bias_p_value=0.26904	consensus_score=199.1	fisher_strand_p_value=0.0767112	frequency=1	ks_quality_p_value=0.976538	major_base=G	major_cov=32/46	major_frequency=9.630e-01	minor_base=A	minor_cov=3/0	new_cov=32/46	polymorphism_frequency=9.630e-01	polymorphism_score=-5.2	prediction=consensus	ref_cov=3/0	total_cov=36/46
RA	4423	.	1	575771	0	G	A	consensus_score=204.0	frequency=1	major_base=A	major_cov=35/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/41
RA	4424	.	1	576540	0	C	G	bias_e_value=1743950	bias_p_value=0.826853	consensus_score=299.9	fisher_strand_p_value=0.472727	frequency=1	ks_quality_p_value=0.999833	major_base=G	major_cov=51/58	major_frequency=9.909e-01	minor_base=A	minor_cov=1/0	new_cov=51/58	polymorphism_frequency=9.909e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/58
RA	4425	.	1	576542	0	A	C	consensus_score=300.2	frequency=1	major_base=C	major_cov=52/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/58
RA	4426	.	1	578201	0	T	C	consensus_score=205.5	frequency=1	major_base=C	major_cov=37/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/38
RA	4427	.	1	578228	0	G	A	consensus_score=201.5	frequency=1	major_base=A	major_cov=35/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/40
RA	4428	.	1	578948	0	T	C	consensus_score=278.0	frequency=1	major_base=C	major_cov=46/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/54
RA	4429	.	1	579106	0	G	A	consensus_score=310.6	frequency=1	major_base=A	major_cov=45/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/66
RA	4430	.	1	580380	0	C	T	consensus_score=295.0	frequency=1	major_base=T	major_cov=51/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/55
RA	4431	.	1	583914	0	G	T	consensus_score=258.9	frequency=1	major_base=T	major_cov=40/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/49
RA	4432	.	1	583990	0	C	T	consensus_score=246.4	frequency=1	major_base=T	major_cov=41/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/49
RA	4433	.	1	584212	0	C	T	consensus_score=319.5	frequency=1	major_base=T	major_cov=58/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/57
RA	4434	.	1	584541	0	T	C	consensus_score=291.1	frequency=1	major_base=C	major_cov=53/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/51
RA	4435	.	1	584973	0	C	A	bias_e_value=3.1022e-05	bias_p_value=1.47084e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=171.4	fisher_strand_p_value=5.01634e-13	frequency=2.688e-01	ks_quality_p_value=1	major_base=C	major_cov=54/14	major_frequency=7.312e-01	minor_base=A	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.688e-01	polymorphism_score=28.5	prediction=polymorphism	ref_cov=54/14	total_cov=54/39
RA	4436	.	1	584997	0	G	A	bias_e_value=0.000106377	bias_p_value=5.04361e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=138.4	fisher_strand_p_value=1.79846e-12	frequency=2.809e-01	ks_quality_p_value=1	major_base=G	major_cov=50/14	major_frequency=7.191e-01	minor_base=A	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.809e-01	polymorphism_score=14.9	prediction=polymorphism	ref_cov=50/14	total_cov=50/40
RA	4437	.	1	585023	0	A	C	bias_e_value=0.00549493	bias_p_value=2.60529e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=154.4	fisher_strand_p_value=1.08908e-10	frequency=2.706e-01	ks_quality_p_value=0.999192	major_base=A	major_cov=46/16	major_frequency=7.294e-01	minor_base=C	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=2.706e-01	polymorphism_score=11.7	prediction=polymorphism	ref_cov=46/16	total_cov=46/40
RA	4438	.	1	585577	0	A	G	consensus_score=287.5	frequency=1	major_base=G	major_cov=55/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/48
RA	4439	.	1	586277	0	T	G	consensus_score=300.9	frequency=1	major_base=G	major_cov=49/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/55
RA	4440	.	1	587750	0	G	A	consensus_score=316.4	frequency=1	major_base=A	major_cov=50/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/66
RA	4441	.	1	588950	0	A	G	consensus_score=308.7	frequency=1	major_base=G	major_cov=54/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/53
RA	4442	.	1	590084	0	G	T	consensus_score=306.0	frequency=1	major_base=T	major_cov=58/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/51
RA	4443	.	1	590205	0	C	T	bias_e_value=4.5789e-06	bias_p_value=2.17098e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=110.7	fisher_strand_p_value=6.93615e-14	frequency=3.049e-01	ks_quality_p_value=1	major_base=C	major_cov=48/9	major_frequency=6.951e-01	minor_base=T	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=3.049e-01	polymorphism_score=19.6	prediction=polymorphism	ref_cov=48/9	total_cov=48/34
RA	4444	.	1	590617	0	A	G	consensus_score=262.6	frequency=1	major_base=G	major_cov=52/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/44
RA	4445	.	1	590656	0	A	G	consensus_score=268.3	frequency=1	major_base=G	major_cov=53/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/40
RA	4446	.	1	590968	0	A	G	consensus_score=337.7	frequency=1	major_base=G	major_cov=66/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/54
RA	4447	.	1	592979	0	C	T	consensus_score=353.1	frequency=1	major_base=T	major_cov=58/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/65
RA	4448	.	1	593451	0	C	A	bias_e_value=883371	bias_p_value=0.418829	consensus_score=204.7	fisher_strand_p_value=0.298459	frequency=1	ks_quality_p_value=0.475187	major_base=A	major_cov=49/31	major_frequency=9.524e-01	minor_base=C	minor_cov=1/3	new_cov=49/31	polymorphism_frequency=9.524e-01	polymorphism_score=1.5	prediction=consensus	ref_cov=1/3	total_cov=50/34
RA	4449	.	1	593468	1	.	G	bias_e_value=105328	bias_p_value=0.049939	consensus_reject=FREQUENCY_CUTOFF	consensus_score=86.6	fisher_strand_p_value=0.00869208	frequency=3.148e-01	ks_quality_p_value=1	major_base=.	major_cov=6/31	major_frequency=6.852e-01	minor_base=G	minor_cov=9/8	new_cov=9/8	polymorphism_frequency=3.148e-01	polymorphism_score=74.1	prediction=polymorphism	ref_cov=6/31	total_cov=15/39
RA	4450	.	1	593468	2	.	G	bias_e_value=105328	bias_p_value=0.049939	consensus_reject=FREQUENCY_CUTOFF	consensus_score=87.6	fisher_strand_p_value=0.00869208	frequency=3.148e-01	ks_quality_p_value=1	major_base=.	major_cov=6/31	major_frequency=6.852e-01	minor_base=G	minor_cov=9/8	new_cov=9/8	polymorphism_frequency=3.148e-01	polymorphism_score=72.7	prediction=polymorphism	ref_cov=6/31	total_cov=15/39
RA	4451	.	1	593468	3	.	A	bias_e_value=81164.3	bias_p_value=0.0384821	consensus_reject=FREQUENCY_CUTOFF	consensus_score=82.6	fisher_strand_p_value=0.00869208	frequency=3.148e-01	ks_quality_p_value=0.730677	major_base=.	major_cov=6/31	major_frequency=6.852e-01	minor_base=A	minor_cov=9/8	new_cov=9/8	polymorphism_frequency=3.148e-01	polymorphism_score=65.8	prediction=polymorphism	ref_cov=6/31	total_cov=15/39
RA	4452	.	1	593468	4	.	C	bias_e_value=104710	bias_p_value=0.0496459	consensus_reject=FREQUENCY_CUTOFF	consensus_score=86.0	fisher_strand_p_value=0.00869208	frequency=3.148e-01	ks_quality_p_value=0.992901	major_base=.	major_cov=6/31	major_frequency=6.852e-01	minor_base=C	minor_cov=9/8	new_cov=9/8	polymorphism_frequency=3.148e-01	polymorphism_score=70.9	prediction=polymorphism	ref_cov=6/31	total_cov=15/39
RA	4453	.	1	593468	5	.	A	bias_e_value=81164.3	bias_p_value=0.0384821	consensus_reject=FREQUENCY_CUTOFF	consensus_score=82.5	fisher_strand_p_value=0.00869208	frequency=3.148e-01	ks_quality_p_value=0.730677	major_base=.	major_cov=6/31	major_frequency=6.852e-01	minor_base=A	minor_cov=9/8	new_cov=9/8	polymorphism_frequency=3.148e-01	polymorphism_score=65.2	prediction=polymorphism	ref_cov=6/31	total_cov=15/39
RA	4454	.	1	593468	6	.	C	bias_e_value=105328	bias_p_value=0.049939	consensus_reject=FREQUENCY_CUTOFF	consensus_score=85.9	fisher_strand_p_value=0.00869208	frequency=3.148e-01	ks_quality_p_value=1	major_base=.	major_cov=6/31	major_frequency=6.852e-01	minor_base=C	minor_cov=9/8	new_cov=9/8	polymorphism_frequency=3.148e-01	polymorphism_score=72.8	prediction=polymorphism	ref_cov=6/31	total_cov=15/39
RA	4455	.	1	593508	0	T	C	bias_e_value=1409980	bias_p_value=0.668508	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-0.5	fisher_strand_p_value=0.490529	frequency=5.152e-01	ks_quality_p_value=0.624078	major_base=C	major_cov=9/8	major_frequency=5.152e-01	minor_base=T	minor_cov=6/10	new_cov=9/8	polymorphism_frequency=5.152e-01	polymorphism_score=29.1	prediction=polymorphism	ref_cov=6/10	total_cov=15/18
RA	4456	.	1	593521	0	A	G	bias_e_value=284989	bias_p_value=0.135121	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-2.0	fisher_strand_p_value=0.490529	frequency=4.848e-01	ks_quality_p_value=0.0611143	major_base=A	major_cov=9/8	major_frequency=5.152e-01	minor_base=G	minor_cov=6/10	new_cov=6/10	polymorphism_frequency=4.848e-01	polymorphism_score=33.5	prediction=polymorphism	ref_cov=9/8	total_cov=15/18
RA	4457	.	1	593525	0	C	T	bias_e_value=10287.4	bias_p_value=0.00487753	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-0.3	fisher_strand_p_value=0.490529	frequency=4.848e-01	ks_quality_p_value=0.00117559	major_base=C	major_cov=9/8	major_frequency=5.152e-01	minor_base=T	minor_cov=6/10	new_cov=6/10	polymorphism_frequency=4.848e-01	polymorphism_score=27.9	prediction=polymorphism	ref_cov=9/8	total_cov=15/18
RA	4458	.	1	593571	0	G	T	bias_e_value=75725.7	bias_p_value=0.0359035	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-0.8	fisher_strand_p_value=0.490529	frequency=4.848e-01	ks_quality_p_value=0.0119167	major_base=G	major_cov=9/8	major_frequency=5.152e-01	minor_base=T	minor_cov=6/10	new_cov=6/10	polymorphism_frequency=4.848e-01	polymorphism_score=38.3	prediction=polymorphism	ref_cov=9/8	total_cov=15/18
RA	4459	.	1	593572	0	A	G	bias_e_value=515650	bias_p_value=0.244483	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-0.6	fisher_strand_p_value=0.490529	frequency=4.848e-01	ks_quality_p_value=0.133866	major_base=A	major_cov=9/8	major_frequency=5.152e-01	minor_base=G	minor_cov=6/10	new_cov=6/10	polymorphism_frequency=4.848e-01	polymorphism_score=31.0	prediction=polymorphism	ref_cov=9/8	total_cov=15/18
RA	4460	.	1	595584	0	C	T	bias_e_value=2109140	bias_p_value=1	consensus_score=247.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999766	major_base=T	major_cov=44/48	major_frequency=9.892e-01	minor_base=G	minor_cov=0/1	new_cov=44/48	polymorphism_frequency=9.892e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/49
RA	4461	.	1	596390	0	G	A	bias_e_value=0.0135071	bias_p_value=6.40407e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=97.2	fisher_strand_p_value=2.81128e-10	frequency=2.667e-01	ks_quality_p_value=0.99035	major_base=G	major_cov=43/12	major_frequency=7.333e-01	minor_base=A	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.667e-01	polymorphism_score=18.7	prediction=polymorphism	ref_cov=43/12	total_cov=43/32
RA	4462	.	1	596436	0	G	A	consensus_score=272.8	frequency=1	major_base=A	major_cov=58/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/37
RA	4463	.	1	598362	0	G	A	bias_e_value=0.491226	bias_p_value=2.32903e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=146.6	fisher_strand_p_value=1.2112e-08	frequency=2.381e-01	ks_quality_p_value=1	major_base=G	major_cov=32/48	major_frequency=7.619e-01	minor_base=A	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.381e-01	polymorphism_score=21.2	prediction=polymorphism	ref_cov=32/48	total_cov=57/48
RA	4464	.	1	599492	0	G	T	consensus_score=27.9	frequency=1	major_base=T	major_cov=7/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/5
RA	4465	.	1	600485	0	C	T	consensus_score=263.1	frequency=1	major_base=T	major_cov=44/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/52
RA	4466	.	1	601088	0	C	T	consensus_score=243.3	frequency=1	major_base=T	major_cov=45/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/44
RA	4467	.	1	602000	0	T	C	consensus_score=320.2	frequency=1	major_base=C	major_cov=48/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/64
RA	4468	.	1	604534	0	C	T	consensus_score=250.6	frequency=1	major_base=T	major_cov=50/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/39
RA	4469	.	1	604741	0	A	G	consensus_score=230.5	frequency=1	major_base=G	major_cov=28/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/55
RA	4470	.	1	605121	0	G	A	consensus_score=234.4	frequency=1	major_base=A	major_cov=40/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/47
RA	4471	.	1	605905	0	T	C	consensus_score=304.6	frequency=1	major_base=C	major_cov=61/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/49
RA	4472	.	1	606127	0	T	A	consensus_score=297.0	frequency=1	major_base=A	major_cov=52/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/52
RA	4473	.	1	606748	0	C	T	consensus_score=313.2	frequency=1	major_base=T	major_cov=47/69	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/69	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/69
RA	4474	.	1	609390	0	A	G	consensus_score=268.1	frequency=1	major_base=G	major_cov=47/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/47
RA	4475	.	1	610269	0	C	T	consensus_score=219.7	frequency=1	major_base=T	major_cov=37/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/44
RA	4476	.	1	610508	0	T	C	consensus_score=362.3	frequency=1	major_base=C	major_cov=67/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=67/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/57
RA	4477	.	1	610640	0	A	G	consensus_score=378.2	frequency=1	major_base=G	major_cov=75/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=75/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=75/61
RA	4478	.	1	612307	0	A	C	bias_e_value=2108850	bias_p_value=0.999862	consensus_score=282.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.983441	major_base=C	major_cov=42/56	major_frequency=9.899e-01	minor_base=A	minor_cov=0/1	new_cov=42/56	polymorphism_frequency=9.899e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=0/1	total_cov=42/57
RA	4479	.	1	617755	0	A	G	bias_e_value=2109010	bias_p_value=0.999935	consensus_score=242.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.988611	major_base=G	major_cov=46/46	major_frequency=9.892e-01	minor_base=T	minor_cov=0/1	new_cov=46/46	polymorphism_frequency=9.892e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/47
RA	4480	.	1	619581	0	C	.	consensus_score=159.0	frequency=1	major_base=.	major_cov=19/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/20
RA	4481	.	1	620026	0	T	C	consensus_score=311.6	frequency=1	major_base=C	major_cov=49/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/59
RA	4482	.	1	620107	0	C	T	consensus_score=223.1	frequency=1	major_base=T	major_cov=45/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/37
RA	4483	.	1	622390	0	G	A	consensus_score=160.6	frequency=1	major_base=A	major_cov=28/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/32
RA	4484	.	1	623203	0	T	C	consensus_score=292.2	frequency=1	major_base=C	major_cov=57/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/45
RA	4485	.	1	623217	0	A	C	consensus_score=291.9	frequency=1	major_base=C	major_cov=57/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/45
RA	4486	.	1	624203	0	G	A	consensus_score=252.9	frequency=1	major_base=A	major_cov=44/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/49
RA	4487	.	1	625266	0	G	A	consensus_score=274.9	frequency=1	major_base=A	major_cov=63/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/37
RA	4488	.	1	625477	0	T	C	consensus_score=336.1	frequency=1	major_base=C	major_cov=61/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/61
RA	4489	.	1	625942	0	A	G	consensus_score=302.0	frequency=1	major_base=G	major_cov=49/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/60
RA	4490	.	1	626274	0	C	T	consensus_score=295.0	frequency=1	major_base=T	major_cov=50/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/54
RA	4491	.	1	626694	0	A	G	consensus_score=273.4	frequency=1	major_base=G	major_cov=55/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/41
RA	4492	.	1	627470	0	T	C	consensus_score=260.0	frequency=1	major_base=C	major_cov=40/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/52
RA	4493	.	1	627729	0	T	G	consensus_score=243.0	frequency=1	major_base=G	major_cov=37/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/48
RA	4494	.	1	628654	0	G	A	consensus_score=283.1	frequency=1	major_base=A	major_cov=55/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/48
RA	4495	.	1	628798	0	C	T	consensus_score=269.0	frequency=1	major_base=T	major_cov=53/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/46
RA	4496	.	1	628830	0	C	A	consensus_score=280.7	frequency=1	major_base=A	major_cov=54/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/45
RA	4497	.	1	628865	0	T	C	consensus_score=274.9	frequency=1	major_base=C	major_cov=46/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/50
RA	4498	.	1	628872	0	C	.	consensus_score=386.2	frequency=1	major_base=.	major_cov=44/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/46
RA	4499	.	1	629087	0	G	A	consensus_score=310.1	frequency=1	major_base=A	major_cov=59/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/56
RA	4500	.	1	629826	0	G	A	consensus_score=132.5	frequency=1	major_base=A	major_cov=26/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/24
RA	4501	.	1	630423	0	G	A	consensus_score=229.9	frequency=1	major_base=A	major_cov=42/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/42
RA	4502	.	1	631192	0	T	C	consensus_score=237.6	frequency=1	major_base=C	major_cov=41/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/44
RA	4503	.	1	632112	0	T	G	consensus_score=231.9	frequency=1	major_base=G	major_cov=50/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/34
RA	4504	.	1	632267	0	G	A	consensus_score=272.5	frequency=1	major_base=A	major_cov=59/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/41
RA	4505	.	1	632805	0	T	G	bias_e_value=4.07903e-05	bias_p_value=1.93397e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=158.8	fisher_strand_p_value=6.66027e-13	frequency=3.455e-01	ks_quality_p_value=1	major_base=T	major_cov=25/47	major_frequency=6.545e-01	minor_base=G	minor_cov=38/0	new_cov=38/0	polymorphism_frequency=3.455e-01	polymorphism_score=31.5	prediction=polymorphism	ref_cov=25/47	total_cov=63/47
RA	4506	.	1	633182	0	T	C	bias_e_value=2109140	bias_p_value=0.999999	consensus_score=375.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998309	major_base=C	major_cov=65/72	major_frequency=9.928e-01	minor_base=G	minor_cov=0/1	new_cov=65/72	polymorphism_frequency=9.928e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/73
RA	4507	.	1	633509	0	T	G	consensus_score=390.3	frequency=1	major_base=G	major_cov=74/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=74/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=74/62
RA	4508	.	1	633967	0	G	A	consensus_score=350.5	frequency=1	major_base=A	major_cov=75/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=75/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=75/53
RA	4509	.	1	634267	0	G	A	bias_e_value=2109140	bias_p_value=1	consensus_score=222.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=41/41	major_frequency=9.880e-01	minor_base=C	minor_cov=0/1	new_cov=41/41	polymorphism_frequency=9.880e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/42
RA	4510	.	1	634500	0	T	G	consensus_score=297.4	frequency=1	major_base=G	major_cov=59/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/47
RA	4511	.	1	635114	0	T	C	consensus_score=366.3	frequency=1	major_base=C	major_cov=69/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=69/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=69/61
RA	4512	.	1	635759	0	A	G	consensus_score=175.4	frequency=1	major_base=G	major_cov=12/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/52
RA	4513	.	1	635777	0	A	G	consensus_score=174.7	frequency=1	major_base=G	major_cov=8/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/55
RA	4514	.	1	635783	0	G	A	consensus_score=158.7	frequency=1	major_base=A	major_cov=6/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/52
RA	4515	.	1	635786	0	G	A	bias_e_value=2109140	bias_p_value=1	consensus_score=144.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=6/52	major_frequency=9.831e-01	minor_base=G	minor_cov=0/1	new_cov=6/52	polymorphism_frequency=9.831e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=6/53
RA	4516	.	1	635792	0	T	C	consensus_score=124.9	frequency=1	major_base=C	major_cov=1/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=1/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=1/47
RA	4517	.	1	635794	0	T	C	consensus_score=129.1	frequency=1	major_base=C	major_cov=1/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=1/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=1/47
RA	4518	.	1	635798	0	C	T	bias_e_value=2109140	bias_p_value=1	consensus_score=133.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=1/46	major_frequency=9.792e-01	minor_base=G	minor_cov=0/1	new_cov=1/46	polymorphism_frequency=9.792e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=1/47
RA	4519	.	1	635802	0	A	G	consensus_score=135.2	frequency=1	major_base=G	major_cov=1/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=1/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=1/47
RA	4520	.	1	635813	0	G	C	consensus_score=145.9	frequency=1	major_base=C	major_cov=4/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/52
RA	4521	.	1	636111	0	G	C	consensus_score=252.9	frequency=1	major_base=C	major_cov=44/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/47
RA	4522	.	1	636181	0	T	C	consensus_score=297.6	frequency=1	major_base=C	major_cov=51/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/53
RA	4523	.	1	636341	0	T	G	consensus_score=303.5	frequency=1	major_base=G	major_cov=49/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/58
RA	4524	.	1	636377	0	G	A	consensus_score=268.9	frequency=1	major_base=A	major_cov=47/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/50
RA	4525	.	1	636459	0	T	C	consensus_score=297.5	frequency=1	major_base=C	major_cov=49/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/56
RA	4526	.	1	636632	0	A	C	consensus_score=346.5	frequency=1	major_base=C	major_cov=68/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=68/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/53
RA	4527	.	1	636633	0	G	A	consensus_score=340.5	frequency=1	major_base=A	major_cov=68/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=68/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/53
RA	4528	.	1	636642	0	A	G	consensus_score=357.8	frequency=1	major_base=G	major_cov=70/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=70/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=70/55
RA	4529	.	1	636645	0	C	A	bias_e_value=2109140	bias_p_value=1	consensus_score=352.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=69/55	major_frequency=9.920e-01	minor_base=T	minor_cov=1/0	new_cov=69/55	polymorphism_frequency=9.920e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=70/55
RA	4530	.	1	636651	0	G	A	bias_e_value=1702180	bias_p_value=0.807047	consensus_score=339.1	fisher_strand_p_value=0.447154	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=68/54	major_frequency=9.919e-01	minor_base=G	minor_cov=0/1	new_cov=68/54	polymorphism_frequency=9.919e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=68/55
RA	4531	.	1	636702	0	T	C	consensus_score=319.8	frequency=1	major_base=C	major_cov=64/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/50
RA	4532	.	1	636717	0	A	G	bias_e_value=2109140	bias_p_value=1	consensus_score=307.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999357	major_base=G	major_cov=59/52	major_frequency=9.911e-01	minor_base=T	minor_cov=1/0	new_cov=59/52	polymorphism_frequency=9.911e-01	polymorphism_score=-5.2	prediction=consensus	ref_cov=0/0	total_cov=60/52
RA	4533	.	1	636747	0	G	C	bias_e_value=2109140	bias_p_value=1	consensus_score=311.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999839	major_base=C	major_cov=56/55	major_frequency=9.911e-01	minor_base=T	minor_cov=1/0	new_cov=56/55	polymorphism_frequency=9.911e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/55
RA	4534	.	1	636757	0	T	C	bias_e_value=2109140	bias_p_value=0.999998	consensus_score=281.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998146	major_base=C	major_cov=48/50	major_frequency=9.899e-01	minor_base=T	minor_cov=0/1	new_cov=48/50	polymorphism_frequency=9.899e-01	polymorphism_score=-5.3	prediction=consensus	ref_cov=0/1	total_cov=48/51
RA	4535	.	1	637032	0	T	C	consensus_score=269.6	frequency=1	major_base=C	major_cov=39/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/56
RA	4536	.	1	637035	0	A	G	consensus_score=272.6	frequency=1	major_base=G	major_cov=39/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/56
RA	4537	.	1	637194	0	G	A	consensus_score=253.1	frequency=1	major_base=A	major_cov=37/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/52
RA	4538	.	1	637212	0	T	C	consensus_score=243.1	frequency=1	major_base=C	major_cov=37/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/47
RA	4539	.	1	637214	0	A	G	consensus_score=235.1	frequency=1	major_base=G	major_cov=37/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/47
RA	4540	.	1	637215	0	A	C	consensus_score=242.2	frequency=1	major_base=C	major_cov=37/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/47
RA	4541	.	1	637265	0	A	G	consensus_score=274.9	frequency=1	major_base=G	major_cov=41/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/53
RA	4542	.	1	637315	0	C	T	consensus_score=270.2	frequency=1	major_base=T	major_cov=38/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/57
RA	4543	.	1	637449	0	T	C	consensus_score=330.0	frequency=1	major_base=C	major_cov=57/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/56
RA	4544	.	1	637497	0	G	A	consensus_score=324.7	frequency=1	major_base=A	major_cov=56/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/58
RA	4545	.	1	637575	0	T	G	consensus_score=261.8	frequency=1	major_base=G	major_cov=51/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/45
RA	4546	.	1	637599	0	A	T	consensus_score=269.4	frequency=1	major_base=T	major_cov=48/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/51
RA	4547	.	1	637628	0	G	T	consensus_score=234.7	frequency=1	major_base=T	major_cov=39/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/49
RA	4548	.	1	637643	0	G	A	consensus_score=257.5	frequency=1	major_base=A	major_cov=41/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/54
RA	4549	.	1	637773	0	G	T	consensus_score=242.2	frequency=1	major_base=T	major_cov=40/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/48
RA	4550	.	1	637933	0	A	G	consensus_score=254.7	frequency=1	major_base=G	major_cov=46/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/44
RA	4551	.	1	637966	0	C	G	consensus_score=248.0	frequency=1	major_base=G	major_cov=46/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/43
RA	4552	.	1	637981	0	G	A	consensus_score=245.9	frequency=1	major_base=A	major_cov=48/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/42
RA	4553	.	1	638085	0	A	G	consensus_score=375.0	frequency=1	major_base=G	major_cov=78/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=78/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=78/56
RA	4554	.	1	638140	0	G	A	consensus_score=389.4	frequency=1	major_base=A	major_cov=79/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=79/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=79/55
RA	4555	.	1	638211	0	A	C	consensus_score=357.6	frequency=1	major_base=C	major_cov=74/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=74/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=74/54
RA	4556	.	1	638265	0	A	G	consensus_score=298.1	frequency=1	major_base=G	major_cov=62/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/44
RA	4557	.	1	638364	0	C	G	consensus_score=289.8	frequency=1	major_base=G	major_cov=65/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/34
RA	4558	.	1	638368	0	A	G	consensus_score=263.5	frequency=1	major_base=G	major_cov=64/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/32
RA	4559	.	1	638409	0	G	A	consensus_score=290.0	frequency=1	major_base=A	major_cov=62/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/44
RA	4560	.	1	638452	0	G	A	bias_e_value=1196070	bias_p_value=0.567086	consensus_score=361.4	fisher_strand_p_value=0.507025	frequency=1	ks_quality_p_value=0.452367	major_base=A	major_cov=72/55	major_frequency=9.845e-01	minor_base=G	minor_cov=2/0	new_cov=72/55	polymorphism_frequency=9.845e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=2/0	total_cov=74/55
RA	4561	.	1	638526	0	A	G	consensus_score=340.9	frequency=1	major_base=G	major_cov=67/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=67/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/51
RA	4562	.	1	638683	0	T	C	consensus_score=236.3	frequency=1	major_base=C	major_cov=54/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/31
RA	4563	.	1	638700	0	A	G	bias_e_value=1661430	bias_p_value=0.787727	consensus_score=250.9	fisher_strand_p_value=0.423913	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=53/38	major_frequency=9.891e-01	minor_base=A	minor_cov=0/1	new_cov=53/38	polymorphism_frequency=9.891e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=53/39
RA	4564	.	1	638712	0	A	C	consensus_score=243.0	frequency=1	major_base=C	major_cov=46/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/39
RA	4565	.	1	638715	0	G	T	consensus_score=231.4	frequency=1	major_base=T	major_cov=46/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/39
RA	4566	.	1	638717	0	G	A	consensus_score=228.4	frequency=1	major_base=A	major_cov=46/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/39
RA	4567	.	1	638718	0	C	T	bias_e_value=1721670	bias_p_value=0.816288	consensus_score=225.6	fisher_strand_p_value=0.458824	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=46/38	major_frequency=9.882e-01	minor_base=C	minor_cov=0/1	new_cov=46/38	polymorphism_frequency=9.882e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=46/39
RA	4568	.	1	638724	0	C	T	consensus_score=238.4	frequency=1	major_base=T	major_cov=46/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/39
RA	4569	.	1	638726	0	A	G	consensus_score=241.7	frequency=1	major_base=G	major_cov=46/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/39
RA	4570	.	1	638740	0	G	A	consensus_score=283.3	frequency=1	major_base=A	major_cov=52/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/48
RA	4571	.	1	638741	0	A	T	consensus_score=277.2	frequency=1	major_base=T	major_cov=52/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/48
RA	4572	.	1	638751	0	T	G	consensus_score=291.0	frequency=1	major_base=G	major_cov=52/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/48
RA	4573	.	1	638781	0	C	T	bias_e_value=2109140	bias_p_value=1	consensus_score=296.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=59/49	major_frequency=9.908e-01	minor_base=A	minor_cov=1/0	new_cov=59/49	polymorphism_frequency=9.908e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/49
RA	4574	.	1	638822	0	G	A	bias_e_value=1736250	bias_p_value=0.823202	consensus_score=296.9	fisher_strand_p_value=0.46789	frequency=1	ks_quality_p_value=0.99983	major_base=A	major_cov=58/50	major_frequency=9.908e-01	minor_base=T	minor_cov=0/1	new_cov=58/50	polymorphism_frequency=9.908e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/51
RA	4575	.	1	638868	0	G	A	consensus_score=305.2	frequency=1	major_base=A	major_cov=60/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/51
RA	4576	.	1	638955	0	T	C	bias_e_value=1599330	bias_p_value=0.758282	consensus_score=283.9	fisher_strand_p_value=0.454545	frequency=1	ks_quality_p_value=0.860468	major_base=C	major_cov=54/44	major_frequency=9.899e-01	minor_base=A	minor_cov=0/1	new_cov=54/44	polymorphism_frequency=9.899e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=0/0	total_cov=54/45
RA	4577	.	1	639108	0	C	T	consensus_score=233.8	frequency=1	major_base=T	major_cov=50/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/36
RA	4578	.	1	639141	0	A	G	consensus_score=266.4	frequency=1	major_base=G	major_cov=52/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/40
RA	4579	.	1	639207	0	C	T	consensus_score=256.2	frequency=1	major_base=T	major_cov=51/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/43
RA	4580	.	1	639208	0	C	T	consensus_score=256.8	frequency=1	major_base=T	major_cov=51/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/43
RA	4581	.	1	639211	1	.	T	consensus_score=241.6	frequency=1	major_base=T	major_cov=46/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/43
RA	4582	.	1	639242	0	G	A	bias_e_value=1571590	bias_p_value=0.74513	consensus_score=253.8	fisher_strand_p_value=0.479167	frequency=1	ks_quality_p_value=0.78756	major_base=A	major_cov=50/45	major_frequency=9.896e-01	minor_base=.	minor_cov=0/1	new_cov=50/45	polymorphism_frequency=9.896e-01	polymorphism_score=-3.6	prediction=consensus	ref_cov=0/0	total_cov=50/46
RA	4583	.	1	639246	0	T	C	consensus_score=264.5	frequency=1	major_base=C	major_cov=50/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/46
RA	4584	.	1	639252	0	A	T	consensus_score=274.9	frequency=1	major_base=T	major_cov=50/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/49
RA	4585	.	1	639255	0	G	A	consensus_score=268.6	frequency=1	major_base=A	major_cov=50/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/49
RA	4586	.	1	639267	0	A	G	consensus_score=288.3	frequency=1	major_base=G	major_cov=52/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/51
RA	4587	.	1	639294	0	A	G	consensus_score=338.4	frequency=1	major_base=G	major_cov=52/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/64
RA	4588	.	1	639366	0	A	G	consensus_score=325.0	frequency=1	major_base=G	major_cov=63/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/54
RA	4589	.	1	639387	0	T	C	consensus_score=305.7	frequency=1	major_base=C	major_cov=55/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/55
RA	4590	.	1	639414	0	G	A	bias_e_value=1777950	bias_p_value=0.842974	consensus_score=257.1	fisher_strand_p_value=0.494845	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=47/49	major_frequency=9.897e-01	minor_base=G	minor_cov=1/0	new_cov=47/49	polymorphism_frequency=9.897e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=48/49
RA	4591	.	1	639417	0	A	G	consensus_score=281.1	frequency=1	major_base=G	major_cov=48/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/49
RA	4592	.	1	639429	0	C	T	consensus_score=273.7	frequency=1	major_base=T	major_cov=48/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/49
RA	4593	.	1	639473	0	A	G	consensus_score=240.4	frequency=1	major_base=G	major_cov=38/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/48
RA	4594	.	1	639477	0	A	G	consensus_score=236.7	frequency=1	major_base=G	major_cov=38/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/48
RA	4595	.	1	639674	0	C	T	consensus_score=362.3	frequency=1	major_base=T	major_cov=61/71	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/71	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/71
RA	4596	.	1	639931	0	G	C	consensus_score=188.9	frequency=1	major_base=C	major_cov=24/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/42
RA	4597	.	1	640588	0	G	A	consensus_score=193.5	frequency=1	major_base=A	major_cov=45/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/25
RA	4598	.	1	640682	0	G	T	consensus_score=233.9	frequency=1	major_base=T	major_cov=62/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/23
RA	4599	.	1	641296	0	A	G	bias_e_value=2109140	bias_p_value=1	consensus_score=185.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=49/20	major_frequency=9.857e-01	minor_base=A	minor_cov=1/0	new_cov=49/20	polymorphism_frequency=9.857e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=50/20
RA	4600	.	1	641326	0	G	C	consensus_score=216.6	frequency=1	major_base=C	major_cov=51/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/26
RA	4601	.	1	641647	0	A	T	consensus_score=248.0	frequency=1	major_base=T	major_cov=45/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/46
RA	4602	.	1	642245	0	C	T	consensus_score=264.7	frequency=1	major_base=T	major_cov=49/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/49
RA	4603	.	1	642248	0	C	T	consensus_score=282.5	frequency=1	major_base=T	major_cov=49/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/49
RA	4604	.	1	642354	0	G	A	consensus_score=264.8	frequency=1	major_base=A	major_cov=39/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/58
RA	4605	.	1	642383	0	T	C	consensus_score=271.5	frequency=1	major_base=C	major_cov=39/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/55
RA	4606	.	1	642384	0	G	A	consensus_score=254.8	frequency=1	major_base=A	major_cov=39/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/55
RA	4607	.	1	642503	0	T	C	consensus_score=293.3	frequency=1	major_base=C	major_cov=44/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/57
RA	4608	.	1	642507	0	G	A	consensus_score=271.9	frequency=1	major_base=A	major_cov=43/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/53
RA	4609	.	1	642560	0	G	T	consensus_score=329.8	frequency=1	major_base=T	major_cov=53/68	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/68	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/68
RA	4610	.	1	642579	0	C	T	consensus_score=347.6	frequency=1	major_base=T	major_cov=56/68	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/68	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/68
RA	4611	.	1	642612	0	T	C	consensus_score=383.4	frequency=1	major_base=C	major_cov=69/68	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=69/68	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=69/68
RA	4612	.	1	642626	0	T	C	consensus_score=388.8	frequency=1	major_base=C	major_cov=67/68	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=67/68	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/68
RA	4613	.	1	642930	0	T	G	consensus_score=336.7	frequency=1	major_base=G	major_cov=59/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/62
RA	4614	.	1	643050	0	A	C	consensus_score=278.4	frequency=1	major_base=C	major_cov=40/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/61
RA	4615	.	1	643069	0	A	G	consensus_score=275.3	frequency=1	major_base=G	major_cov=39/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/58
RA	4616	.	1	643111	0	T	C	consensus_score=287.3	frequency=1	major_base=C	major_cov=43/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/60
RA	4617	.	1	643149	0	A	G	consensus_score=329.8	frequency=1	major_base=G	major_cov=51/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/63
RA	4618	.	1	643185	0	T	C	consensus_score=336.6	frequency=1	major_base=C	major_cov=62/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/55
RA	4619	.	1	643195	0	A	G	consensus_score=340.5	frequency=1	major_base=G	major_cov=65/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/52
RA	4620	.	1	643512	0	C	A	consensus_score=289.0	frequency=1	major_base=A	major_cov=41/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/63
RA	4621	.	1	643542	0	C	T	consensus_score=273.6	frequency=1	major_base=T	major_cov=40/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/62
RA	4622	.	1	643713	0	G	T	consensus_score=219.6	frequency=1	major_base=T	major_cov=28/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/51
RA	4623	.	1	643714	0	C	T	consensus_score=220.2	frequency=1	major_base=T	major_cov=28/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/51
RA	4624	.	1	644060	0	A	G	consensus_score=304.1	frequency=1	major_base=G	major_cov=51/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/56
RA	4625	.	1	644061	0	T	C	consensus_score=296.9	frequency=1	major_base=C	major_cov=51/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/56
RA	4626	.	1	644074	0	A	C	consensus_score=300.9	frequency=1	major_base=C	major_cov=49/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/57
RA	4627	.	1	644079	0	C	T	consensus_score=305.3	frequency=1	major_base=T	major_cov=53/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/58
RA	4628	.	1	644106	0	C	T	consensus_score=312.8	frequency=1	major_base=T	major_cov=58/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/57
RA	4629	.	1	644107	0	A	G	consensus_score=332.4	frequency=1	major_base=G	major_cov=58/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/57
RA	4630	.	1	644142	0	C	T	consensus_score=293.3	frequency=1	major_base=T	major_cov=49/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/59
RA	4631	.	1	644211	0	C	T	consensus_score=273.5	frequency=1	major_base=T	major_cov=46/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/54
RA	4632	.	1	644214	0	A	G	consensus_score=287.0	frequency=1	major_base=G	major_cov=46/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/54
RA	4633	.	1	644223	0	C	T	consensus_score=278.6	frequency=1	major_base=T	major_cov=45/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/56
RA	4634	.	1	644232	0	C	T	consensus_score=273.3	frequency=1	major_base=T	major_cov=45/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/56
RA	4635	.	1	644241	0	A	G	bias_e_value=1616540	bias_p_value=0.766442	consensus_score=274.9	fisher_strand_p_value=0.4	frequency=1	ks_quality_p_value=0.999798	major_base=G	major_cov=39/60	major_frequency=9.900e-01	minor_base=A	minor_cov=1/0	new_cov=39/60	polymorphism_frequency=9.900e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=41/60
RA	4636	.	1	644245	0	C	T	consensus_score=276.3	frequency=1	major_base=T	major_cov=41/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/60
RA	4637	.	1	644247	0	T	G	consensus_score=284.5	frequency=1	major_base=G	major_cov=41/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/60
RA	4638	.	1	644295	0	C	T	consensus_score=233.0	frequency=1	major_base=T	major_cov=33/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/49
RA	4639	.	1	644298	0	T	C	consensus_score=226.4	frequency=1	major_base=C	major_cov=33/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/49
RA	4640	.	1	644301	0	C	T	consensus_score=222.8	frequency=1	major_base=T	major_cov=33/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/49
RA	4641	.	1	644304	0	G	A	consensus_score=223.5	frequency=1	major_base=A	major_cov=33/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/49
RA	4642	.	1	644313	0	C	T	consensus_score=284.9	frequency=1	major_base=T	major_cov=45/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/55
RA	4643	.	1	644337	0	T	C	consensus_score=289.6	frequency=1	major_base=C	major_cov=49/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/56
RA	4644	.	1	644340	0	C	G	consensus_score=285.2	frequency=1	major_base=G	major_cov=49/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/56
RA	4645	.	1	644364	0	C	T	consensus_score=326.2	frequency=1	major_base=T	major_cov=48/70	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/70	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/70
RA	4646	.	1	644370	0	G	A	consensus_score=321.2	frequency=1	major_base=A	major_cov=48/69	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/69	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/69
RA	4647	.	1	644379	0	T	G	consensus_score=329.1	frequency=1	major_base=G	major_cov=47/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/67
RA	4648	.	1	644382	0	C	A	consensus_score=310.5	frequency=1	major_base=A	major_cov=47/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/67
RA	4649	.	1	644405	0	C	T	bias_e_value=937860	bias_p_value=0.444664	consensus_score=319.9	fisher_strand_p_value=0.155372	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=46/73	major_frequency=9.835e-01	minor_base=A	minor_cov=2/0	new_cov=46/73	polymorphism_frequency=9.835e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/73
RA	4650	.	1	644451	0	A	G	consensus_score=357.5	frequency=1	major_base=G	major_cov=52/72	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/72	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/72
RA	4651	.	1	644467	0	C	T	consensus_score=333.3	frequency=1	major_base=T	major_cov=58/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/65
RA	4652	.	1	644586	0	T	C	consensus_score=254.3	frequency=1	major_base=C	major_cov=45/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/47
RA	4653	.	1	644602	0	T	C	consensus_score=233.3	frequency=1	major_base=C	major_cov=45/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/39
RA	4654	.	1	644604	0	G	A	consensus_score=242.9	frequency=1	major_base=A	major_cov=45/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/39
RA	4655	.	1	644607	0	T	C	consensus_score=238.5	frequency=1	major_base=C	major_cov=45/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/39
RA	4656	.	1	644637	0	T	C	consensus_score=262.6	frequency=1	major_base=C	major_cov=48/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/46
RA	4657	.	1	644649	0	T	C	consensus_score=295.7	frequency=1	major_base=C	major_cov=55/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/50
RA	4658	.	1	644655	0	T	C	consensus_score=285.3	frequency=1	major_base=C	major_cov=51/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/53
RA	4659	.	1	644667	0	C	T	consensus_score=297.3	frequency=1	major_base=T	major_cov=52/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/54
RA	4660	.	1	644676	0	G	A	consensus_score=298.2	frequency=1	major_base=A	major_cov=50/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/54
RA	4661	.	1	644692	0	A	G	consensus_score=297.2	frequency=1	major_base=G	major_cov=49/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/56
RA	4662	.	1	644700	0	T	C	consensus_score=329.2	frequency=1	major_base=C	major_cov=48/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/65
RA	4663	.	1	644752	0	T	C	consensus_score=312.0	frequency=1	major_base=C	major_cov=39/69	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/69	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/69
RA	4664	.	1	644796	0	C	T	consensus_score=332.5	frequency=1	major_base=T	major_cov=46/74	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/74	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/74
RA	4665	.	1	644814	0	T	C	consensus_score=318.6	frequency=1	major_base=C	major_cov=44/71	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/71	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/71
RA	4666	.	1	644817	0	A	C	consensus_score=318.6	frequency=1	major_base=C	major_cov=44/71	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/71	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/71
RA	4667	.	1	646015	0	C	T	consensus_score=338.6	frequency=1	major_base=T	major_cov=50/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/67
RA	4668	.	1	646576	0	G	A	consensus_score=318.6	frequency=1	major_base=A	major_cov=63/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/54
RA	4669	.	1	646663	0	C	A	consensus_score=279.8	frequency=1	major_base=A	major_cov=53/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/52
RA	4670	.	1	647018	1	.	G	bias_e_value=1323320	bias_p_value=0.627422	consensus_score=271.3	fisher_strand_p_value=0.297379	frequency=1	ks_quality_p_value=0.917997	major_base=G	major_cov=64/35	major_frequency=9.706e-01	minor_base=.	minor_cov=1/2	new_cov=64/35	polymorphism_frequency=9.706e-01	polymorphism_score=3.0	prediction=consensus	ref_cov=1/2	total_cov=65/37
RA	4671	.	1	647018	2	.	T	bias_e_value=1323320	bias_p_value=0.627422	consensus_score=273.0	fisher_strand_p_value=0.297379	frequency=1	ks_quality_p_value=0.917997	major_base=T	major_cov=64/35	major_frequency=9.706e-01	minor_base=.	minor_cov=1/2	new_cov=64/35	polymorphism_frequency=9.706e-01	polymorphism_score=2.3	prediction=consensus	ref_cov=1/2	total_cov=65/37
RA	4672	.	1	647087	0	C	T	consensus_score=304.3	frequency=1	major_base=T	major_cov=60/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/51
RA	4673	.	1	648741	0	A	G	consensus_score=137.0	frequency=1	major_base=G	major_cov=33/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/17
RA	4674	.	1	649119	0	T	C	consensus_score=320.5	frequency=1	major_base=C	major_cov=64/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/50
RA	4675	.	1	649377	0	T	C	consensus_score=262.9	frequency=1	major_base=C	major_cov=55/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/40
RA	4676	.	1	649451	0	G	A	consensus_score=318.4	frequency=1	major_base=A	major_cov=63/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/52
RA	4677	.	1	649641	0	A	C	consensus_score=279.1	frequency=1	major_base=C	major_cov=51/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/50
RA	4678	.	1	651662	0	T	G	bias_e_value=4.89015e-11	bias_p_value=2.31855e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=126.2	fisher_strand_p_value=5.38375e-19	frequency=4.022e-01	ks_quality_p_value=1	major_base=T	major_cov=7/48	major_frequency=5.978e-01	minor_base=G	minor_cov=37/0	new_cov=37/0	polymorphism_frequency=4.022e-01	polymorphism_score=18.5	prediction=polymorphism	ref_cov=7/48	total_cov=44/48
RA	4679	.	1	651689	0	T	G	bias_e_value=3.68892	bias_p_value=1.74901e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=194.6	fisher_strand_p_value=1.0231e-07	frequency=2.549e-01	ks_quality_p_value=1	major_base=T	major_cov=35/41	major_frequency=7.451e-01	minor_base=G	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=2.549e-01	polymorphism_score=18.9	prediction=polymorphism	ref_cov=35/41	total_cov=63/41
RA	4680	.	1	651828	0	T	G	consensus_score=338.6	frequency=1	major_base=G	major_cov=72/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=72/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=72/53
RA	4681	.	1	653673	0	C	T	consensus_score=280.8	frequency=1	major_base=T	major_cov=56/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/45
RA	4682	.	1	654771	0	A	G	consensus_score=385.2	frequency=1	major_base=G	major_cov=76/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=76/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=76/62
RA	4683	.	1	656344	0	T	C	consensus_score=341.4	frequency=1	major_base=C	major_cov=58/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/65
RA	4684	.	1	656793	0	C	A	bias_e_value=1732780	bias_p_value=0.821555	consensus_score=356.8	fisher_strand_p_value=0.465649	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=60/70	major_frequency=9.924e-01	minor_base=G	minor_cov=1/0	new_cov=60/70	polymorphism_frequency=9.924e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/70
RA	4685	.	1	657342	0	A	G	consensus_score=297.3	frequency=1	major_base=G	major_cov=52/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/56
RA	4686	.	1	657918	0	C	A	consensus_score=285.3	frequency=1	major_base=A	major_cov=60/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/44
RA	4687	.	1	658015	0	G	A	bias_e_value=2109140	bias_p_value=1	consensus_score=313.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=57/65	major_frequency=9.919e-01	minor_base=C	minor_cov=0/1	new_cov=57/65	polymorphism_frequency=9.919e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/67
RA	4688	.	1	660002	0	A	C	consensus_score=272.7	frequency=1	major_base=C	major_cov=47/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/47
RA	4689	.	1	660984	0	C	T	consensus_score=267.3	frequency=1	major_base=T	major_cov=52/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/46
RA	4690	.	1	663048	0	C	T	consensus_score=291.7	frequency=1	major_base=T	major_cov=53/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/54
RA	4691	.	1	666141	0	C	T	consensus_score=218.5	frequency=1	major_base=T	major_cov=34/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/47
RA	4692	.	1	666997	0	A	G	consensus_score=285.0	frequency=1	major_base=G	major_cov=53/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/47
RA	4693	.	1	667532	0	T	C	consensus_score=320.6	frequency=1	major_base=C	major_cov=59/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/51
RA	4694	.	1	668669	0	G	A	consensus_score=221.5	frequency=1	major_base=A	major_cov=52/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/28
RA	4695	.	1	669164	0	C	G	bias_e_value=2109140	bias_p_value=0.999999	consensus_score=304.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998414	major_base=G	major_cov=60/46	major_frequency=9.907e-01	minor_base=A	minor_cov=1/0	new_cov=60/46	polymorphism_frequency=9.907e-01	polymorphism_score=-5.2	prediction=consensus	ref_cov=0/0	total_cov=61/46
RA	4696	.	1	669564	0	G	T	consensus_score=247.6	frequency=1	major_base=T	major_cov=48/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/41
RA	4697	.	1	671276	0	A	G	consensus_score=319.6	frequency=1	major_base=G	major_cov=62/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/49
RA	4698	.	1	671499	0	T	C	consensus_score=275.4	frequency=1	major_base=C	major_cov=35/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/64
RA	4699	.	1	672521	0	A	G	consensus_score=310.8	frequency=1	major_base=G	major_cov=57/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/55
RA	4700	.	1	673304	0	G	A	consensus_score=236.4	frequency=1	major_base=A	major_cov=45/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/44
RA	4701	.	1	674021	0	T	C	consensus_score=223.2	frequency=1	major_base=C	major_cov=39/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/40
RA	4702	.	1	674316	0	A	C	consensus_score=227.2	frequency=1	major_base=C	major_cov=37/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/46
RA	4703	.	1	675014	0	C	G	consensus_score=242.6	frequency=1	major_base=G	major_cov=50/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/35
RA	4704	.	1	675207	0	A	G	consensus_score=284.2	frequency=1	major_base=G	major_cov=53/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/51
RA	4705	.	1	675473	0	C	T	bias_e_value=1560520	bias_p_value=0.739885	consensus_score=212.0	fisher_strand_p_value=0.455696	frequency=1	ks_quality_p_value=0.816396	major_base=T	major_cov=35/43	major_frequency=9.873e-01	minor_base=C	minor_cov=1/0	new_cov=35/43	polymorphism_frequency=9.873e-01	polymorphism_score=-5.2	prediction=consensus	ref_cov=1/0	total_cov=36/43
RA	4706	.	1	675833	0	T	C	consensus_score=199.8	frequency=1	major_base=C	major_cov=35/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/37
RA	4707	.	1	676876	0	A	C	consensus_score=298.5	frequency=1	major_base=C	major_cov=52/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/53
RA	4708	.	1	677702	0	G	A	consensus_score=127.8	frequency=1	major_base=A	major_cov=29/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/19
RA	4709	.	1	677805	0	T	C	consensus_score=173.1	frequency=1	major_base=C	major_cov=42/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/20
RA	4710	.	1	679610	0	C	T	consensus_score=224.5	frequency=1	major_base=T	major_cov=38/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/45
RA	4711	.	1	682714	0	T	C	bias_e_value=1873390	bias_p_value=0.888223	consensus_score=184.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.566136	major_base=C	major_cov=41/26	major_frequency=9.853e-01	minor_base=T	minor_cov=1/0	new_cov=41/26	polymorphism_frequency=9.853e-01	polymorphism_score=-5.1	prediction=consensus	ref_cov=1/0	total_cov=42/26
RA	4712	.	1	682723	0	A	G	bias_e_value=1930430	bias_p_value=0.915269	consensus_score=232.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.617681	major_base=G	major_cov=51/30	major_frequency=9.878e-01	minor_base=A	minor_cov=1/0	new_cov=51/30	polymorphism_frequency=9.878e-01	polymorphism_score=-5.5	prediction=consensus	ref_cov=1/0	total_cov=52/30
RA	4713	.	1	682908	0	T	C	consensus_score=325.2	frequency=1	major_base=C	major_cov=45/68	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/68	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/68
RA	4714	.	1	686828	0	C	T	consensus_score=159.9	frequency=1	major_base=T	major_cov=25/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/35
RA	4715	.	1	687243	0	A	G	consensus_score=197.4	frequency=1	major_base=G	major_cov=36/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/35
RA	4716	.	1	687858	0	G	T	bias_e_value=0.0729199	bias_p_value=3.45732e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=117.5	fisher_strand_p_value=1.62806e-09	frequency=2.676e-01	ks_quality_p_value=1	major_base=G	major_cov=12/40	major_frequency=7.324e-01	minor_base=T	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.676e-01	polymorphism_score=16.4	prediction=polymorphism	ref_cov=12/40	total_cov=31/40
RA	4717	.	1	687878	0	C	T	bias_e_value=0.072997	bias_p_value=3.46098e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=90.3	fisher_strand_p_value=1.62986e-09	frequency=2.794e-01	ks_quality_p_value=1	major_base=C	major_cov=11/38	major_frequency=7.206e-01	minor_base=T	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.794e-01	polymorphism_score=11.4	prediction=polymorphism	ref_cov=11/38	total_cov=30/38
RA	4718	.	1	691513	0	G	T	consensus_score=170.8	frequency=1	major_base=T	major_cov=29/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/36
RA	4719	.	1	691611	0	A	G	consensus_score=112.8	frequency=1	major_base=G	major_cov=16/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/25
RA	4720	.	1	691648	0	T	.	consensus_score=74.8	deleted=1	frequency=1	major_base=.	major_cov=9/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/11
RA	4721	.	1	691657	0	T	C	consensus_score=45.4	deleted=1	frequency=1	major_base=C	major_cov=9/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/9
RA	4722	.	1	691666	0	A	C	consensus_score=44.7	deleted=1	frequency=1	major_base=C	major_cov=9/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/9
RA	4723	.	1	692072	0	G	T	consensus_score=11.2	deleted=1	frequency=1	major_base=T	major_cov=4/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/2
RA	4724	.	1	692133	0	G	A	consensus_score=65.0	frequency=1	major_base=A	major_cov=12/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/14
RA	4725	.	1	692150	0	C	.	consensus_score=124.8	frequency=1	major_base=.	major_cov=13/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/17
RA	4726	.	1	693629	0	G	T	consensus_score=119.0	frequency=1	major_base=T	major_cov=17/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/26
RA	4727	.	1	694134	0	C	T	consensus_score=215.5	frequency=1	major_base=T	major_cov=46/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/33
RA	4728	.	1	696009	0	G	A	consensus_score=243.8	frequency=1	major_base=A	major_cov=40/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/48
RA	4729	.	1	698631	0	A	G	consensus_score=227.6	frequency=1	major_base=G	major_cov=52/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/31
RA	4730	.	1	698752	0	A	G	consensus_score=260.3	frequency=1	major_base=G	major_cov=57/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/38
RA	4731	.	1	699039	1	.	A	consensus_score=189.4	frequency=1	major_base=A	major_cov=31/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/36
RA	4732	.	1	699154	0	G	T	consensus_score=130.4	frequency=1	major_base=T	major_cov=23/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/27
RA	4733	.	1	704726	1	.	T	consensus_score=131.2	frequency=1	major_base=T	major_cov=22/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/30
RA	4734	.	1	706154	0	C	A	bias_e_value=1270470	bias_p_value=0.602362	consensus_score=250.2	fisher_strand_p_value=0.334863	frequency=1	ks_quality_p_value=0.759118	major_base=A	major_cov=43/52	major_frequency=9.596e-01	minor_base=C	minor_cov=3/1	new_cov=43/52	polymorphism_frequency=9.596e-01	polymorphism_score=1.8	prediction=consensus	ref_cov=3/1	total_cov=46/53
RA	4735	.	1	706357	0	G	A	consensus_score=178.9	frequency=1	major_base=A	major_cov=38/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/30
RA	4736	.	1	706366	0	G	A	consensus_score=177.1	frequency=1	major_base=A	major_cov=36/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/28
RA	4737	.	1	706434	0	A	G	bias_e_value=2108680	bias_p_value=0.999781	consensus_score=47.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.979145	major_base=G	major_cov=14/11	major_frequency=8.065e-01	minor_base=A	minor_cov=3/3	new_cov=14/11	polymorphism_frequency=8.065e-01	polymorphism_score=5.7	prediction=consensus	ref_cov=3/3	total_cov=17/14
RA	4738	.	1	707013	0	A	G	consensus_score=331.3	frequency=1	major_base=G	major_cov=56/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/59
RA	4739	.	1	708394	0	A	G	consensus_score=200.5	frequency=1	major_base=G	major_cov=33/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/38
RA	4740	.	1	709143	0	T	C	consensus_score=256.2	frequency=1	major_base=C	major_cov=47/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/45
RA	4741	.	1	709527	0	C	T	consensus_score=209.6	frequency=1	major_base=T	major_cov=42/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/36
RA	4742	.	1	712147	0	G	A	consensus_score=265.7	frequency=1	major_base=A	major_cov=51/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/46
RA	4743	.	1	712547	0	T	C	consensus_score=207.1	frequency=1	major_base=C	major_cov=45/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/32
RA	4744	.	1	716463	0	T	C	consensus_score=100.8	frequency=1	major_base=C	major_cov=23/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/14
RA	4745	.	1	717017	0	G	A	consensus_score=272.4	frequency=1	major_base=A	major_cov=53/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/42
RA	4746	.	1	717901	0	G	A	consensus_score=235.9	frequency=1	major_base=A	major_cov=42/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/45
RA	4747	.	1	720019	0	C	T	consensus_score=300.2	frequency=1	major_base=T	major_cov=54/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/56
RA	4748	.	1	720563	0	C	T	consensus_score=220.5	frequency=1	major_base=T	major_cov=38/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/41
RA	4749	.	1	721372	0	C	T	consensus_score=186.4	frequency=1	major_base=T	major_cov=24/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/44
RA	4750	.	1	723852	0	G	T	consensus_score=285.7	frequency=1	major_base=T	major_cov=49/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/55
RA	4751	.	1	725836	0	C	T	bias_e_value=2109080	bias_p_value=0.99997	consensus_score=363.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.992278	major_base=T	major_cov=68/60	major_frequency=9.922e-01	minor_base=C	minor_cov=1/0	new_cov=68/60	polymorphism_frequency=9.922e-01	polymorphism_score=-5.2	prediction=consensus	ref_cov=1/0	total_cov=69/60
RA	4752	.	1	728157	0	T	C	consensus_score=297.7	frequency=1	major_base=C	major_cov=45/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/59
RA	4753	.	1	728654	1	.	T	bias_e_value=2109140	bias_p_value=1	consensus_score=291.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999308	major_base=T	major_cov=41/66	major_frequency=9.907e-01	minor_base=G	minor_cov=0/1	new_cov=41/66	polymorphism_frequency=9.907e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/67
RA	4754	.	1	728665	0	G	A	consensus_score=298.3	frequency=1	major_base=A	major_cov=41/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/67
RA	4755	.	1	729178	0	G	A	bias_e_value=1636570	bias_p_value=0.775942	consensus_score=248.5	fisher_strand_p_value=0.410526	frequency=1	ks_quality_p_value=0.999776	major_base=A	major_cov=56/38	major_frequency=9.895e-01	minor_base=G	minor_cov=0/1	new_cov=56/38	polymorphism_frequency=9.895e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=56/39
RA	4756	.	1	729244	0	T	C	bias_e_value=1665780	bias_p_value=0.789791	consensus_score=240.6	fisher_strand_p_value=0.431818	frequency=1	ks_quality_p_value=0.987281	major_base=C	major_cov=50/37	major_frequency=9.886e-01	minor_base=T	minor_cov=0/1	new_cov=50/37	polymorphism_frequency=9.886e-01	polymorphism_score=-5.2	prediction=consensus	ref_cov=0/1	total_cov=50/38
RA	4757	.	1	731843	0	T	C	consensus_score=231.0	frequency=1	major_base=C	major_cov=40/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/46
RA	4758	.	1	732396	0	A	G	consensus_score=304.3	frequency=1	major_base=G	major_cov=59/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/46
RA	4759	.	1	733723	0	C	T	consensus_score=341.6	frequency=1	major_base=T	major_cov=68/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=68/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/51
RA	4760	.	1	734406	0	T	C	consensus_score=232.1	frequency=1	major_base=C	major_cov=42/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/41
RA	4761	.	1	735072	0	G	A	consensus_score=275.0	frequency=1	major_base=A	major_cov=58/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/42
RA	4762	.	1	735286	0	T	A	bias_e_value=0.0092632	bias_p_value=4.39193e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=152.0	fisher_strand_p_value=1.87721e-10	frequency=2.674e-01	ks_quality_p_value=1	major_base=T	major_cov=17/46	major_frequency=7.326e-01	minor_base=A	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.674e-01	polymorphism_score=12.4	prediction=polymorphism	ref_cov=17/46	total_cov=40/46
RA	4763	.	1	737344	0	A	G	consensus_score=153.4	frequency=1	major_base=G	major_cov=27/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/27
RA	4764	.	1	740251	0	A	G	consensus_score=301.6	frequency=1	major_base=G	major_cov=60/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/47
RA	4765	.	1	744305	0	G	A	consensus_score=211.7	frequency=1	major_base=A	major_cov=41/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/38
RA	4766	.	1	744578	0	C	T	consensus_score=246.2	frequency=1	major_base=T	major_cov=46/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/41
RA	4767	.	1	744643	0	A	C	consensus_score=242.8	frequency=1	major_base=C	major_cov=44/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/42
RA	4768	.	1	745226	0	G	T	consensus_score=205.1	frequency=1	major_base=T	major_cov=46/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/29
RA	4769	.	1	747418	0	C	T	consensus_score=215.7	frequency=1	major_base=T	major_cov=47/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/41
RA	4770	.	1	747450	0	A	G	consensus_score=255.3	frequency=1	major_base=G	major_cov=47/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/44
RA	4771	.	1	747588	0	C	T	consensus_score=239.9	frequency=1	major_base=T	major_cov=42/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/48
RA	4772	.	1	748192	0	C	T	consensus_score=232.1	frequency=1	major_base=T	major_cov=53/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/32
RA	4773	.	1	749642	0	T	C	consensus_score=239.4	frequency=1	major_base=C	major_cov=42/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/42
RA	4774	.	1	751555	0	A	T	bias_e_value=3.92491e-05	bias_p_value=1.8609e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=126.8	fisher_strand_p_value=6.39984e-13	frequency=3.188e-01	ks_quality_p_value=1	major_base=A	major_cov=6/41	major_frequency=6.812e-01	minor_base=T	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=3.188e-01	polymorphism_score=21.1	prediction=polymorphism	ref_cov=6/41	total_cov=28/41
RA	4775	.	1	753771	0	G	C	consensus_score=179.4	frequency=1	major_base=C	major_cov=38/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/28
RA	4776	.	1	753979	0	T	C	consensus_score=218.6	frequency=1	major_base=C	major_cov=39/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/41
RA	4777	.	1	754660	0	C	A	consensus_score=196.2	frequency=1	major_base=A	major_cov=36/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/37
RA	4778	.	1	754873	0	T	C	consensus_score=232.3	frequency=1	major_base=C	major_cov=30/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/51
RA	4779	.	1	754910	0	T	C	consensus_score=199.5	frequency=1	major_base=C	major_cov=28/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/44
RA	4780	.	1	755400	0	T	C	consensus_score=208.6	frequency=1	major_base=C	major_cov=36/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/41
RA	4781	.	1	755630	0	T	C	bias_e_value=2107780	bias_p_value=0.999352	consensus_score=218.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.964221	major_base=C	major_cov=36/45	major_frequency=9.878e-01	minor_base=T	minor_cov=0/1	new_cov=36/45	polymorphism_frequency=9.878e-01	polymorphism_score=-4.9	prediction=consensus	ref_cov=0/1	total_cov=36/46
RA	4782	.	1	755759	0	C	T	consensus_score=161.5	frequency=1	major_base=T	major_cov=32/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/30
RA	4783	.	1	755861	0	A	G	consensus_score=183.1	frequency=1	major_base=G	major_cov=31/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/36
RA	4784	.	1	756301	0	C	T	consensus_score=160.3	frequency=1	major_base=T	major_cov=25/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/35
RA	4785	.	1	756986	0	G	A	bias_e_value=2109140	bias_p_value=1	consensus_score=174.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=31/33	major_frequency=9.846e-01	minor_base=T	minor_cov=0/1	new_cov=31/33	polymorphism_frequency=9.846e-01	polymorphism_score=-6.5	prediction=consensus	ref_cov=0/0	total_cov=31/34
RA	4786	.	1	758553	0	C	T	consensus_score=197.6	frequency=1	major_base=T	major_cov=29/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/40
RA	4787	.	1	758912	0	C	T	consensus_score=161.9	frequency=1	major_base=T	major_cov=30/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/30
RA	4788	.	1	760637	0	G	A	consensus_score=257.0	frequency=1	major_base=A	major_cov=50/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/45
RA	4789	.	1	762009	0	T	C	consensus_score=191.1	frequency=1	major_base=C	major_cov=29/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/39
RA	4790	.	1	762802	0	C	T	consensus_score=186.6	frequency=1	major_base=T	major_cov=30/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/39
RA	4791	.	1	763959	0	C	T	consensus_score=201.2	frequency=1	major_base=T	major_cov=41/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/30
RA	4792	.	1	764320	0	G	A	consensus_score=107.2	frequency=1	major_base=A	major_cov=19/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/20
RA	4793	.	1	764882	0	C	T	consensus_score=242.4	frequency=1	major_base=T	major_cov=52/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/34
RA	4794	.	1	768115	0	G	T	consensus_score=232.0	frequency=1	major_base=T	major_cov=36/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/49
RA	4795	.	1	768141	0	G	A	consensus_score=229.8	frequency=1	major_base=A	major_cov=40/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/42
RA	4796	.	1	768602	1	.	T	consensus_score=206.7	frequency=1	major_base=T	major_cov=36/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/40
RA	4797	.	1	768932	0	T	G	consensus_score=185.1	frequency=1	major_base=G	major_cov=36/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/30
RA	4798	.	1	768948	0	C	T	consensus_score=190.9	frequency=1	major_base=T	major_cov=37/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/33
RA	4799	.	1	769676	0	C	T	consensus_score=178.2	frequency=1	major_base=T	major_cov=34/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/31
RA	4800	.	1	770372	0	T	C	consensus_score=216.4	frequency=1	major_base=C	major_cov=35/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/45
RA	4801	.	1	771509	0	C	T	consensus_score=216.3	frequency=1	major_base=T	major_cov=37/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/38
RA	4802	.	1	771733	0	A	G	consensus_score=225.5	frequency=1	major_base=G	major_cov=41/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/40
RA	4803	.	1	771980	0	T	C	consensus_score=234.1	frequency=1	major_base=C	major_cov=40/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/44
RA	4804	.	1	772162	0	C	T	consensus_score=213.6	frequency=1	major_base=T	major_cov=37/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/43
RA	4805	.	1	773388	0	C	T	consensus_score=116.3	frequency=1	major_base=T	major_cov=20/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/23
RA	4806	.	1	773515	0	G	A	consensus_score=36.8	deleted=1	frequency=1	major_base=A	major_cov=8/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/8
RA	4807	.	1	780703	0	A	G	consensus_score=183.8	frequency=1	major_base=G	major_cov=32/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/35
RA	4808	.	1	781946	0	A	G	consensus_score=298.7	frequency=1	major_base=G	major_cov=45/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/62
RA	4809	.	1	786745	0	G	T	consensus_score=155.3	frequency=1	major_base=T	major_cov=28/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/30
RA	4810	.	1	786918	0	G	T	consensus_score=270.1	frequency=1	major_base=T	major_cov=52/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/45
RA	4811	.	1	787626	0	A	G	consensus_score=150.0	frequency=1	major_base=G	major_cov=30/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/26
RA	4812	.	1	787743	0	G	A	bias_e_value=0.139509	bias_p_value=6.61451e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=29.2	fisher_strand_p_value=3.21803e-09	frequency=4.375e-01	ks_quality_p_value=1	major_base=G	major_cov=5/22	major_frequency=5.625e-01	minor_base=A	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=4.375e-01	polymorphism_score=21.5	prediction=polymorphism	ref_cov=5/22	total_cov=26/22
RA	4813	.	1	788497	0	T	C	bias_e_value=1700120	bias_p_value=0.80607	consensus_score=183.7	fisher_strand_p_value=0.447761	frequency=1	ks_quality_p_value=0.995938	major_base=C	major_cov=29/37	major_frequency=9.851e-01	minor_base=A	minor_cov=1/0	new_cov=29/37	polymorphism_frequency=9.851e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/37
RA	4814	.	1	789243	0	T	C	consensus_score=256.2	frequency=1	major_base=C	major_cov=46/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/46
RA	4815	.	1	790155	0	G	T	bias_e_value=1731630	bias_p_value=0.821009	consensus_score=227.3	fisher_strand_p_value=0.46988	frequency=1	ks_quality_p_value=0.989477	major_base=T	major_cov=44/38	major_frequency=9.880e-01	minor_base=G	minor_cov=0/1	new_cov=44/38	polymorphism_frequency=9.880e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=0/1	total_cov=44/39
RA	4816	.	1	791036	0	T	C	consensus_score=150.3	frequency=1	major_base=C	major_cov=23/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/32
RA	4817	.	1	791388	0	C	T	consensus_score=205.2	frequency=1	major_base=T	major_cov=34/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/38
RA	4818	.	1	791510	0	T	A	consensus_score=250.6	frequency=1	major_base=A	major_cov=44/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/44
RA	4819	.	1	792406	0	C	A	consensus_score=274.3	frequency=1	major_base=A	major_cov=48/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/47
RA	4820	.	1	792903	0	A	G	consensus_score=249.0	frequency=1	major_base=G	major_cov=42/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/47
RA	4821	.	1	793169	0	G	T	bias_e_value=0.179197	bias_p_value=8.49619e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=136.4	fisher_strand_p_value=4.32129e-09	frequency=2.090e-01	ks_quality_p_value=0.968952	major_base=G	major_cov=48/5	major_frequency=7.910e-01	minor_base=T	minor_cov=1/13	new_cov=1/13	polymorphism_frequency=2.090e-01	polymorphism_score=13.4	prediction=polymorphism	ref_cov=48/5	total_cov=49/19
RA	4822	.	1	793273	0	G	A	consensus_score=199.1	frequency=1	major_base=A	major_cov=48/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/24
RA	4823	.	1	793685	0	C	T	consensus_score=216.4	frequency=1	major_base=T	major_cov=36/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/44
RA	4824	.	1	793823	0	C	T	bias_e_value=0.00815768	bias_p_value=3.86777e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=87.1	fisher_strand_p_value=1.64384e-10	frequency=3.043e-01	ks_quality_p_value=1	major_base=C	major_cov=10/38	major_frequency=6.957e-01	minor_base=T	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=3.043e-01	polymorphism_score=12.8	prediction=polymorphism	ref_cov=10/38	total_cov=31/38
RA	4825	.	1	797660	0	G	A	consensus_score=211.6	frequency=1	major_base=A	major_cov=46/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/32
RA	4826	.	1	798065	0	T	C	consensus_score=213.3	frequency=1	major_base=C	major_cov=44/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/30
RA	4827	.	1	798637	0	C	T	consensus_score=259.4	frequency=1	major_base=T	major_cov=49/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/46
RA	4828	.	1	800937	0	T	C	consensus_score=104.4	frequency=1	major_base=C	major_cov=1/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=1/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=1/38
RA	4829	.	1	801896	0	C	.	bias_e_value=2109130	bias_p_value=0.999996	consensus_score=304.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.997159	major_base=.	major_cov=37/37	major_frequency=9.737e-01	minor_base=T	minor_cov=1/1	new_cov=37/37	polymorphism_frequency=9.737e-01	polymorphism_score=1.1	prediction=consensus	ref_cov=0/0	total_cov=38/38
RA	4830	.	1	801948	0	C	A	bias_e_value=2105940	bias_p_value=0.99848	consensus_score=253.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.945369	major_base=A	major_cov=44/45	major_frequency=9.889e-01	minor_base=.	minor_cov=0/1	new_cov=44/45	polymorphism_frequency=9.889e-01	polymorphism_score=-3.5	prediction=consensus	ref_cov=0/0	total_cov=44/46
RA	4831	.	1	802561	0	T	C	consensus_score=196.6	frequency=1	major_base=C	major_cov=36/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/33
RA	4832	.	1	802756	0	T	C	consensus_score=261.7	frequency=1	major_base=C	major_cov=44/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/49
RA	4833	.	1	803258	0	C	T	consensus_score=222.6	frequency=1	major_base=T	major_cov=32/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/51
RA	4834	.	1	803881	0	T	C	consensus_score=174.6	frequency=1	major_base=C	major_cov=27/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/34
RA	4835	.	1	805061	0	T	G	consensus_score=191.1	frequency=1	major_base=G	major_cov=38/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/30
RA	4836	.	1	806062	0	C	T	consensus_score=77.4	frequency=1	major_base=T	major_cov=17/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/13
RA	4837	.	1	807074	0	A	G	consensus_score=295.1	frequency=1	major_base=G	major_cov=40/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/66
RA	4838	.	1	809616	0	T	G	consensus_score=135.3	frequency=1	major_base=G	major_cov=26/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/25
RA	4839	.	1	809725	1	.	A	consensus_score=140.0	frequency=1	major_base=A	major_cov=35/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/19
RA	4840	.	1	813639	0	T	C	consensus_score=222.8	frequency=1	major_base=C	major_cov=40/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/41
RA	4841	.	1	814678	0	G	.	consensus_score=327.1	frequency=1	major_base=.	major_cov=28/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/49
RA	4842	.	1	816312	0	T	G	consensus_score=187.6	frequency=1	major_base=G	major_cov=29/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/36
RA	4843	.	1	818861	0	A	.	consensus_score=373.2	frequency=1	major_base=.	major_cov=42/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/46
RA	4844	.	1	820394	0	A	C	bias_e_value=0.00138524	bias_p_value=6.56779e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=123.8	fisher_strand_p_value=2.58803e-11	frequency=3.425e-01	ks_quality_p_value=1	major_base=A	major_cov=37/11	major_frequency=6.575e-01	minor_base=C	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=3.425e-01	polymorphism_score=10.3	prediction=polymorphism	ref_cov=37/11	total_cov=37/36
RA	4845	.	1	820524	0	G	A	consensus_score=221.7	frequency=1	major_base=A	major_cov=37/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/44
RA	4846	.	1	820707	0	C	A	consensus_score=90.7	frequency=1	major_base=A	major_cov=19/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/16
RA	4847	.	1	821965	0	T	G	consensus_score=262.5	frequency=1	major_base=G	major_cov=47/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/48
RA	4848	.	1	822163	0	A	G	bias_e_value=1237800	bias_p_value=0.586871	consensus_score=197.3	fisher_strand_p_value=0.243071	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=43/44	major_frequency=9.667e-01	minor_base=C	minor_cov=0/3	new_cov=43/44	polymorphism_frequency=9.667e-01	polymorphism_score=-3.5	prediction=consensus	ref_cov=0/0	total_cov=43/47
RA	4849	.	1	822235	0	T	G	consensus_score=243.5	frequency=1	major_base=G	major_cov=40/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/47
RA	4850	.	1	824098	0	T	C	consensus_score=282.4	frequency=1	major_base=C	major_cov=60/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/41
RA	4851	.	1	824336	0	G	A	consensus_score=243.2	frequency=1	major_base=A	major_cov=52/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/37
RA	4852	.	1	825364	0	G	A	consensus_score=242.8	frequency=1	major_base=A	major_cov=48/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/40
RA	4853	.	1	825664	0	T	C	bias_e_value=1753890	bias_p_value=0.831564	consensus_score=327.4	fisher_strand_p_value=0.478992	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=62/56	major_frequency=9.916e-01	minor_base=A	minor_cov=0/1	new_cov=62/56	polymorphism_frequency=9.916e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/57
RA	4854	.	1	826644	0	T	C	consensus_score=276.3	frequency=1	major_base=C	major_cov=50/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/45
RA	4855	.	1	826785	0	C	T	consensus_score=283.8	frequency=1	major_base=T	major_cov=51/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/52
RA	4856	.	1	829678	0	T	G	consensus_score=273.9	frequency=1	major_base=G	major_cov=52/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/46
RA	4857	.	1	830059	0	A	G	consensus_score=246.2	frequency=1	major_base=G	major_cov=45/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/43
RA	4858	.	1	830435	0	C	T	consensus_score=285.8	frequency=1	major_base=T	major_cov=39/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/66
RA	4859	.	1	831570	0	C	T	consensus_score=271.8	frequency=1	major_base=T	major_cov=41/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/58
RA	4860	.	1	831934	0	C	A	consensus_score=318.2	frequency=1	major_base=A	major_cov=62/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/54
RA	4861	.	1	832685	0	T	C	consensus_score=208.9	frequency=1	major_base=C	major_cov=41/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/33
RA	4862	.	1	833089	0	T	C	consensus_score=333.8	frequency=1	major_base=C	major_cov=79/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=79/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=79/38
RA	4863	.	1	833315	0	C	T	consensus_score=310.6	frequency=1	major_base=T	major_cov=57/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/57
RA	4864	.	1	833532	0	A	G	consensus_score=225.1	frequency=1	major_base=G	major_cov=30/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/48
RA	4865	.	1	835028	0	A	G	consensus_score=271.3	frequency=1	major_base=G	major_cov=37/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/60
RA	4866	.	1	835990	0	T	C	consensus_score=356.1	frequency=1	major_base=C	major_cov=49/73	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/73	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/73
RA	4867	.	1	840130	0	G	A	consensus_score=240.6	frequency=1	major_base=A	major_cov=38/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/47
RA	4868	.	1	841589	0	C	T	consensus_score=210.9	frequency=1	major_base=T	major_cov=44/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/33
RA	4869	.	1	842911	0	T	C	consensus_score=302.3	frequency=1	major_base=C	major_cov=56/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/52
RA	4870	.	1	844036	0	C	T	consensus_score=223.2	frequency=1	major_base=T	major_cov=38/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/44
RA	4871	.	1	844968	0	C	T	consensus_score=259.8	frequency=1	major_base=T	major_cov=49/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/45
RA	4872	.	1	845636	0	C	T	consensus_score=181.4	frequency=1	major_base=T	major_cov=36/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/32
RA	4873	.	1	846908	0	T	C	consensus_score=216.0	frequency=1	major_base=C	major_cov=40/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/38
RA	4874	.	1	847134	0	C	T	consensus_score=169.5	frequency=1	major_base=T	major_cov=20/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/41
RA	4875	.	1	847354	0	A	G	consensus_score=290.1	frequency=1	major_base=G	major_cov=60/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/40
RA	4876	.	1	847549	0	A	G	consensus_score=287.8	frequency=1	major_base=G	major_cov=52/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/51
RA	4877	.	1	847622	0	A	G	consensus_score=308.9	frequency=1	major_base=G	major_cov=53/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/60
RA	4878	.	1	848932	0	T	C	consensus_score=194.2	frequency=1	major_base=C	major_cov=36/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/35
RA	4879	.	1	849025	0	T	G	bias_e_value=0.0051738	bias_p_value=2.45303e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=116.8	fisher_strand_p_value=1.02192e-10	frequency=3.452e-01	ks_quality_p_value=1	major_base=T	major_cov=17/38	major_frequency=6.548e-01	minor_base=G	minor_cov=29/0	new_cov=29/0	polymorphism_frequency=3.452e-01	polymorphism_score=21.3	prediction=polymorphism	ref_cov=17/38	total_cov=51/38
RA	4880	.	1	849612	0	C	T	consensus_score=119.1	frequency=1	major_base=T	major_cov=17/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/26
RA	4881	.	1	849682	0	G	C	consensus_score=154.1	frequency=1	major_base=C	major_cov=25/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/29
RA	4882	.	1	849698	0	C	T	consensus_score=162.1	frequency=1	major_base=T	major_cov=23/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/34
RA	4883	.	1	849933	0	A	G	consensus_score=19.5	deleted=1	frequency=1	major_base=G	major_cov=5/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/4
RA	4884	.	1	849936	0	C	T	consensus_score=19.2	deleted=1	frequency=1	major_base=T	major_cov=5/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/4
RA	4885	.	1	849942	0	C	T	consensus_score=16.5	deleted=1	frequency=1	major_base=T	major_cov=5/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/3
RA	4886	.	1	849945	0	T	C	consensus_score=17.5	deleted=1	frequency=1	major_base=C	major_cov=5/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/3
RA	4887	.	1	851094	0	T	C	consensus_score=11.6	deleted=1	frequency=1	major_base=C	major_cov=5/1	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/1	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/1
RA	4888	.	1	851103	0	A	T	consensus_score=10.7	deleted=1	frequency=1	major_base=T	major_cov=5/1	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/1	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/1
RA	4889	.	1	851115	0	T	C	consensus_score=11.6	deleted=1	frequency=1	major_base=C	major_cov=5/1	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/1	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/1
RA	4890	.	1	851124	0	T	G	consensus_score=13.4	deleted=1	frequency=1	major_base=G	major_cov=5/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/2
RA	4891	.	1	851127	0	T	A	consensus_score=14.5	deleted=1	frequency=1	major_base=A	major_cov=5/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/2
RA	4892	.	1	851133	0	T	G	consensus_score=14.7	deleted=1	frequency=1	major_base=G	major_cov=5/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/2
RA	4893	.	1	851136	0	G	A	consensus_score=13.3	deleted=1	frequency=1	major_base=A	major_cov=5/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/2
RA	4894	.	1	851146	0	G	A	consensus_score=12.6	deleted=1	frequency=1	major_base=A	major_cov=5/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/2
RA	4895	.	1	851149	0	A	G	consensus_score=14.8	deleted=1	frequency=1	major_base=G	major_cov=5/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/2
RA	4896	.	1	851158	0	T	C	consensus_score=14.5	deleted=1	frequency=1	major_base=C	major_cov=5/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/2
RA	4897	.	1	851172	0	C	A	consensus_score=12.5	deleted=1	frequency=1	major_base=A	major_cov=5/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/2
RA	4898	.	1	851175	0	G	C	consensus_score=14.5	deleted=1	frequency=1	major_base=C	major_cov=5/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/2
RA	4899	.	1	851176	0	C	T	consensus_score=13.9	deleted=1	frequency=1	major_base=T	major_cov=5/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/2
RA	4900	.	1	851178	0	A	G	consensus_score=14.1	deleted=1	frequency=1	major_base=G	major_cov=5/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/2
RA	4901	.	1	851181	0	A	G	consensus_score=13.2	deleted=1	frequency=1	major_base=G	major_cov=5/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/2
RA	4902	.	1	851208	0	T	C	consensus_score=10.9	deleted=1	frequency=1	major_base=C	major_cov=4/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/2
RA	4903	.	1	851214	0	T	C	consensus_score=10.0	deleted=1	frequency=1	major_base=C	major_cov=4/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/2
RA	4904	.	1	851615	0	G	A	consensus_score=11.5	deleted=1	frequency=1	major_base=A	major_cov=2/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=2/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=2/4
RA	4905	.	1	851640	0	G	A	consensus_score=48.2	deleted=1	frequency=1	major_base=A	major_cov=5/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/14
RA	4906	.	1	851658	0	A	G	consensus_score=53.9	deleted=1	frequency=1	major_base=G	major_cov=6/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/15
RA	4907	.	1	851670	0	T	G	consensus_score=53.9	deleted=1	frequency=1	major_base=G	major_cov=6/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/15
RA	4908	.	1	851679	0	A	G	consensus_score=56.6	deleted=1	frequency=1	major_base=G	major_cov=6/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/16
RA	4909	.	1	851685	0	T	G	consensus_score=59.2	deleted=1	frequency=1	major_base=G	major_cov=6/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/16
RA	4910	.	1	851688	0	T	C	consensus_score=58.1	deleted=1	frequency=1	major_base=C	major_cov=6/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/16
RA	4911	.	1	851703	0	A	G	consensus_score=80.9	frequency=1	major_base=G	major_cov=13/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/17
RA	4912	.	1	851727	0	T	A	consensus_score=125.3	frequency=1	major_base=A	major_cov=15/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/31
RA	4913	.	1	851732	0	C	A	consensus_score=124.0	frequency=1	major_base=A	major_cov=15/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/31
RA	4914	.	1	851745	0	T	C	consensus_score=129.8	frequency=1	major_base=C	major_cov=17/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/32
RA	4915	.	1	851757	0	G	T	consensus_score=151.3	frequency=1	major_base=T	major_cov=19/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/39
RA	4916	.	1	851765	0	T	C	consensus_score=179.0	frequency=1	major_base=C	major_cov=21/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/41
RA	4917	.	1	851785	0	T	C	consensus_score=196.2	frequency=1	major_base=C	major_cov=24/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/44
RA	4918	.	1	851787	0	G	A	consensus_score=190.5	frequency=1	major_base=A	major_cov=24/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/44
RA	4919	.	1	851790	0	G	T	consensus_score=182.6	frequency=1	major_base=T	major_cov=24/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/44
RA	4920	.	1	851793	0	A	G	consensus_score=194.4	frequency=1	major_base=G	major_cov=24/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/44
RA	4921	.	1	851795	0	T	C	consensus_score=198.3	frequency=1	major_base=C	major_cov=24/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/44
RA	4922	.	1	851800	0	G	T	consensus_score=194.9	frequency=1	major_base=T	major_cov=24/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/44
RA	4923	.	1	851808	0	T	C	consensus_score=198.4	frequency=1	major_base=C	major_cov=24/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/44
RA	4924	.	1	851809	0	G	A	consensus_score=183.4	frequency=1	major_base=A	major_cov=24/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/44
RA	4925	.	1	851810	0	A	T	consensus_score=177.2	frequency=1	major_base=T	major_cov=24/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/44
RA	4926	.	1	851818	0	C	T	consensus_score=210.2	frequency=1	major_base=T	major_cov=25/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/48
RA	4927	.	1	851865	0	G	A	consensus_score=205.7	frequency=1	major_base=A	major_cov=27/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/49
RA	4928	.	1	851919	0	A	G	consensus_score=178.7	frequency=1	major_base=G	major_cov=24/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/39
RA	4929	.	1	851935	0	G	T	consensus_score=147.8	frequency=1	major_base=T	major_cov=14/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/38
RA	4930	.	1	851936	0	G	T	consensus_score=145.6	frequency=1	major_base=T	major_cov=14/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/38
RA	4931	.	1	851939	0	T	C	consensus_score=140.4	frequency=1	major_base=C	major_cov=14/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/38
RA	4932	.	1	851941	0	C	G	consensus_score=142.1	frequency=1	major_base=G	major_cov=14/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/38
RA	4933	.	1	851960	0	G	A	bias_e_value=2109140	bias_p_value=0.999998	consensus_score=81.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998219	major_base=A	major_cov=12/21	major_frequency=9.706e-01	minor_base=G	minor_cov=0/1	new_cov=12/21	polymorphism_frequency=9.706e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=0/1	total_cov=12/22
RA	4934	.	1	851961	0	T	C	consensus_score=96.5	frequency=1	major_base=C	major_cov=12/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/22
RA	4935	.	1	851970	0	T	C	consensus_score=83.1	frequency=1	major_base=C	major_cov=12/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/20
RA	4936	.	1	851973	0	A	G	consensus_score=84.1	frequency=1	major_base=G	major_cov=12/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/20
RA	4937	.	1	851981	0	C	T	consensus_score=76.8	frequency=1	major_base=T	major_cov=12/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/18
RA	4938	.	1	851994	0	G	A	consensus_score=68.8	frequency=1	major_base=A	major_cov=10/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/17
RA	4939	.	1	851997	0	T	C	consensus_score=69.9	frequency=1	major_base=C	major_cov=10/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/17
RA	4940	.	1	852015	0	C	T	consensus_score=55.3	frequency=1	major_base=T	major_cov=9/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/12
RA	4941	.	1	852018	0	T	C	consensus_score=55.8	frequency=1	major_base=C	major_cov=9/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/12
RA	4942	.	1	852024	0	C	A	consensus_score=43.6	frequency=1	major_base=A	major_cov=9/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/9
RA	4943	.	1	852041	0	A	G	consensus_score=29.8	frequency=1	major_base=G	major_cov=6/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/6
RA	4944	.	1	852054	0	A	G	consensus_score=16.0	frequency=1	major_base=G	major_cov=4/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/4
RA	4945	.	1	852075	0	T	A	consensus_score=11.3	frequency=1	major_base=A	major_cov=3/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/3
RA	4946	.	1	852279	0	C	T	consensus_score=22.0	frequency=1	major_base=T	major_cov=7/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/3
RA	4947	.	1	852306	0	T	C	consensus_score=29.0	frequency=1	major_base=C	major_cov=9/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/3
RA	4948	.	1	852311	0	C	T	consensus_score=25.1	frequency=1	major_base=T	major_cov=9/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/2
RA	4949	.	1	852314	0	C	T	consensus_score=24.8	frequency=1	major_base=T	major_cov=9/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/2
RA	4950	.	1	852318	0	A	G	consensus_score=23.2	frequency=1	major_base=G	major_cov=9/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/2
RA	4951	.	1	852319	0	C	T	consensus_score=24.9	frequency=1	major_base=T	major_cov=9/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/2
RA	4952	.	1	852325	0	T	C	consensus_score=41.9	frequency=1	major_base=C	major_cov=11/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/6
RA	4953	.	1	852342	0	T	C	consensus_score=48.1	frequency=1	major_base=C	major_cov=13/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/7
RA	4954	.	1	852350	0	G	A	consensus_score=45.9	frequency=1	major_base=A	major_cov=12/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/7
RA	4955	.	1	852354	0	C	T	consensus_score=46.4	frequency=1	major_base=T	major_cov=12/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/7
RA	4956	.	1	852360	0	A	C	consensus_score=49.1	frequency=1	major_base=C	major_cov=12/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/7
RA	4957	.	1	852369	0	C	T	consensus_score=50.2	frequency=1	major_base=T	major_cov=14/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/7
RA	4958	.	1	852378	0	T	C	consensus_score=71.7	frequency=1	major_base=C	major_cov=20/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/7
RA	4959	.	1	852398	0	G	T	consensus_score=81.0	frequency=1	major_base=T	major_cov=24/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/7
RA	4960	.	1	852417	0	C	A	consensus_score=109.5	frequency=1	major_base=A	major_cov=35/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/8
RA	4961	.	1	852425	0	C	T	consensus_score=128.8	frequency=1	major_base=T	major_cov=38/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/9
RA	4962	.	1	852429	0	A	G	bias_e_value=1071460	bias_p_value=0.508007	consensus_score=126.2	fisher_strand_p_value=0.191489	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=38/8	major_frequency=9.787e-01	minor_base=T	minor_cov=0/1	new_cov=38/8	polymorphism_frequency=9.787e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/9
RA	4963	.	1	852435	0	A	T	consensus_score=127.7	frequency=1	major_base=T	major_cov=38/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/10
RA	4964	.	1	852442	0	C	T	consensus_score=125.6	frequency=1	major_base=T	major_cov=38/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/10
RA	4965	.	1	852444	0	T	C	consensus_score=127.9	frequency=1	major_base=C	major_cov=38/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/10
RA	4966	.	1	852451	0	C	T	consensus_score=142.4	frequency=1	major_base=T	major_cov=39/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/13
RA	4967	.	1	852459	0	C	T	consensus_score=135.7	frequency=1	major_base=T	major_cov=39/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/15
RA	4968	.	1	852468	0	C	T	consensus_score=148.9	frequency=1	major_base=T	major_cov=40/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/15
RA	4969	.	1	852473	0	C	T	consensus_score=150.3	frequency=1	major_base=T	major_cov=44/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/15
RA	4970	.	1	852480	0	A	G	consensus_score=173.0	frequency=1	major_base=G	major_cov=48/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/15
RA	4971	.	1	852516	0	C	T	consensus_score=164.1	frequency=1	major_base=T	major_cov=47/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/13
RA	4972	.	1	852518	0	T	C	bias_e_value=1141720	bias_p_value=0.54132	consensus_score=161.7	fisher_strand_p_value=0.216667	frequency=1	ks_quality_p_value=0.979866	major_base=C	major_cov=47/12	major_frequency=9.833e-01	minor_base=A	minor_cov=0/1	new_cov=47/12	polymorphism_frequency=9.833e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/13
RA	4973	.	1	852519	0	G	A	consensus_score=152.4	frequency=1	major_base=A	major_cov=47/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/13
RA	4974	.	1	852546	0	G	A	consensus_score=174.1	frequency=1	major_base=A	major_cov=47/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/14
RA	4975	.	1	852552	0	A	G	consensus_score=170.6	frequency=1	major_base=G	major_cov=47/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/13
RA	4976	.	1	852557	0	A	T	consensus_score=159.6	frequency=1	major_base=T	major_cov=47/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/12
RA	4977	.	1	852564	0	A	G	consensus_score=147.9	frequency=1	major_base=G	major_cov=43/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/9
RA	4978	.	1	852566	0	A	T	consensus_score=139.2	frequency=1	major_base=T	major_cov=43/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/9
RA	4979	.	1	852578	0	C	T	consensus_score=135.3	frequency=1	major_base=T	major_cov=41/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/9
RA	4980	.	1	852582	0	C	T	consensus_score=137.8	frequency=1	major_base=T	major_cov=40/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/11
RA	4981	.	1	852600	0	C	T	consensus_score=136.8	frequency=1	major_base=T	major_cov=39/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/12
RA	4982	.	1	852610	0	A	G	consensus_score=145.8	frequency=1	major_base=G	major_cov=37/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/14
RA	4983	.	1	852612	0	C	A	consensus_score=136.0	frequency=1	major_base=A	major_cov=37/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/14
RA	4984	.	1	852621	0	A	G	consensus_score=119.3	frequency=1	major_base=G	major_cov=31/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/14
RA	4985	.	1	852627	0	C	T	consensus_score=110.9	frequency=1	major_base=T	major_cov=28/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/13
RA	4986	.	1	852630	0	T	C	consensus_score=112.1	frequency=1	major_base=C	major_cov=28/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/13
RA	4987	.	1	852633	0	A	C	consensus_score=110.2	frequency=1	major_base=C	major_cov=28/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/13
RA	4988	.	1	852639	0	A	G	consensus_score=122.5	frequency=1	major_base=G	major_cov=29/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/14
RA	4989	.	1	852648	0	A	G	consensus_score=103.7	frequency=1	major_base=G	major_cov=25/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/14
RA	4990	.	1	852651	0	T	C	consensus_score=103.4	frequency=1	major_base=C	major_cov=25/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/14
RA	4991	.	1	852666	0	G	T	consensus_score=91.4	frequency=1	major_base=T	major_cov=20/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/15
RA	4992	.	1	852669	0	A	G	consensus_score=97.8	frequency=1	major_base=G	major_cov=20/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/15
RA	4993	.	1	852672	0	C	T	consensus_score=90.9	frequency=1	major_base=T	major_cov=20/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/15
RA	4994	.	1	852675	0	G	A	consensus_score=90.0	frequency=1	major_base=A	major_cov=20/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/15
RA	4995	.	1	852681	0	G	A	consensus_score=96.1	frequency=1	major_base=A	major_cov=21/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/16
RA	4996	.	1	852684	0	C	T	consensus_score=98.1	frequency=1	major_base=T	major_cov=21/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/16
RA	4997	.	1	852690	0	T	G	consensus_score=107.7	frequency=1	major_base=G	major_cov=23/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/15
RA	4998	.	1	852705	0	A	G	consensus_score=112.5	frequency=1	major_base=G	major_cov=28/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/14
RA	4999	.	1	852722	0	G	A	consensus_score=121.7	frequency=1	major_base=A	major_cov=29/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/18
RA	5000	.	1	852731	0	C	T	consensus_score=125.0	frequency=1	major_base=T	major_cov=26/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/21
RA	5001	.	1	852741	0	A	G	consensus_score=144.7	frequency=1	major_base=G	major_cov=28/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/23
RA	5002	.	1	852770	0	T	C	consensus_score=171.5	frequency=1	major_base=C	major_cov=37/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/27
RA	5003	.	1	852774	0	T	C	consensus_score=175.7	frequency=1	major_base=C	major_cov=37/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/27
RA	5004	.	1	852783	0	C	T	consensus_score=179.7	frequency=1	major_base=T	major_cov=38/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/29
RA	5005	.	1	852789	0	C	T	consensus_score=178.7	frequency=1	major_base=T	major_cov=38/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/29
RA	5006	.	1	852803	0	T	C	consensus_score=195.5	frequency=1	major_base=C	major_cov=39/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/29
RA	5007	.	1	852805	1	.	T	consensus_score=183.1	frequency=1	major_base=T	major_cov=39/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/29
RA	5008	.	1	852809	0	T	C	bias_e_value=1599700	bias_p_value=0.75846	consensus_score=189.9	fisher_strand_p_value=0.426471	frequency=1	ks_quality_p_value=0.917557	major_base=C	major_cov=39/28	major_frequency=9.853e-01	minor_base=T	minor_cov=0/1	new_cov=39/28	polymorphism_frequency=9.853e-01	polymorphism_score=-5.4	prediction=consensus	ref_cov=0/1	total_cov=39/29
RA	5009	.	1	852816	0	T	.	consensus_score=251.4	frequency=1	major_base=.	major_cov=38/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/21
RA	5010	.	1	852817	0	T	.	consensus_score=251.4	frequency=1	major_base=.	major_cov=38/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/21
RA	5011	.	1	852829	0	C	T	consensus_score=175.4	frequency=1	major_base=T	major_cov=39/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/26
RA	5012	.	1	852837	0	T	C	consensus_score=179.2	frequency=1	major_base=C	major_cov=37/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/25
RA	5013	.	1	852842	0	T	C	consensus_score=193.3	frequency=1	major_base=C	major_cov=42/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/28
RA	5014	.	1	852857	0	T	C	consensus_score=212.7	frequency=1	major_base=C	major_cov=44/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/29
RA	5015	.	1	852863	0	A	G	consensus_score=218.4	frequency=1	major_base=G	major_cov=44/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/31
RA	5016	.	1	852871	0	T	C	bias_e_value=2109140	bias_p_value=1	consensus_score=213.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999649	major_base=C	major_cov=44/31	major_frequency=9.868e-01	minor_base=T	minor_cov=1/0	new_cov=44/31	polymorphism_frequency=9.868e-01	polymorphism_score=-5.2	prediction=consensus	ref_cov=1/0	total_cov=45/31
RA	5017	.	1	852884	0	A	G	consensus_score=237.7	frequency=1	major_base=G	major_cov=50/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/33
RA	5018	.	1	852890	0	A	G	consensus_score=249.2	frequency=1	major_base=G	major_cov=50/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/36
RA	5019	.	1	852932	0	G	T	consensus_score=252.6	frequency=1	major_base=T	major_cov=48/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/41
RA	5020	.	1	852935	0	A	G	consensus_score=246.5	frequency=1	major_base=G	major_cov=44/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/41
RA	5021	.	1	852941	0	T	C	consensus_score=248.3	frequency=1	major_base=C	major_cov=44/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/41
RA	5022	.	1	852946	0	T	C	consensus_score=244.6	frequency=1	major_base=C	major_cov=43/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/41
RA	5023	.	1	852958	0	T	C	consensus_score=221.3	frequency=1	major_base=C	major_cov=41/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/35
RA	5024	.	1	852970	0	C	T	consensus_score=181.4	frequency=1	major_base=T	major_cov=36/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/32
RA	5025	.	1	852971	0	T	C	consensus_score=186.7	frequency=1	major_base=C	major_cov=36/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/32
RA	5026	.	1	852989	0	C	T	consensus_score=169.3	frequency=1	major_base=T	major_cov=34/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/30
RA	5027	.	1	853007	0	T	C	consensus_score=145.0	frequency=1	major_base=C	major_cov=25/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/27
RA	5028	.	1	853013	0	C	T	consensus_score=138.0	frequency=1	major_base=T	major_cov=25/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/27
RA	5029	.	1	853022	0	G	A	consensus_score=140.7	frequency=1	major_base=A	major_cov=27/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/26
RA	5030	.	1	853040	0	G	A	consensus_score=119.0	frequency=1	major_base=A	major_cov=22/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/23
RA	5031	.	1	853043	0	G	A	consensus_score=119.1	frequency=1	major_base=A	major_cov=22/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/23
RA	5032	.	1	853045	0	C	T	consensus_score=118.3	frequency=1	major_base=T	major_cov=22/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/23
RA	5033	.	1	853061	0	A	C	consensus_score=125.7	frequency=1	major_base=C	major_cov=24/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/21
RA	5034	.	1	853063	0	G	T	consensus_score=125.2	frequency=1	major_base=T	major_cov=26/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/21
RA	5035	.	1	853067	0	G	A	consensus_score=125.1	frequency=1	major_base=A	major_cov=26/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/21
RA	5036	.	1	853073	0	C	T	consensus_score=105.1	frequency=1	major_base=T	major_cov=24/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/16
RA	5037	.	1	853076	0	T	C	consensus_score=111.4	frequency=1	major_base=C	major_cov=24/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/16
RA	5038	.	1	853079	0	A	T	consensus_score=105.1	frequency=1	major_base=T	major_cov=24/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/16
RA	5039	.	1	853085	0	G	A	consensus_score=140.1	frequency=1	major_base=A	major_cov=32/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/21
RA	5040	.	1	853091	0	A	G	consensus_score=164.9	frequency=1	major_base=G	major_cov=34/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/23
RA	5041	.	1	853097	0	C	T	consensus_score=152.8	frequency=1	major_base=T	major_cov=34/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/21
RA	5042	.	1	853100	0	G	T	consensus_score=152.8	frequency=1	major_base=T	major_cov=34/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/21
RA	5043	.	1	853103	0	G	T	consensus_score=153.8	frequency=1	major_base=T	major_cov=34/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/21
RA	5044	.	1	853109	0	A	G	consensus_score=167.3	frequency=1	major_base=G	major_cov=35/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/23
RA	5045	.	1	853112	0	T	A	consensus_score=152.5	frequency=1	major_base=A	major_cov=35/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/23
RA	5046	.	1	853124	0	G	C	consensus_score=161.6	frequency=1	major_base=C	major_cov=37/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/22
RA	5047	.	1	853133	0	A	T	consensus_score=153.6	frequency=1	major_base=T	major_cov=36/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/22
RA	5048	.	1	853139	0	T	G	consensus_score=179.7	frequency=1	major_base=G	major_cov=38/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/24
RA	5049	.	1	853148	0	G	A	consensus_score=170.4	frequency=1	major_base=A	major_cov=40/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/25
RA	5050	.	1	853154	0	A	G	consensus_score=193.1	frequency=1	major_base=G	major_cov=41/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/25
RA	5051	.	1	853157	0	C	T	consensus_score=176.6	frequency=1	major_base=T	major_cov=41/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/25
RA	5052	.	1	853175	0	A	G	consensus_score=249.7	frequency=1	major_base=G	major_cov=54/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/32
RA	5053	.	1	853181	0	C	A	consensus_score=238.5	frequency=1	major_base=A	major_cov=54/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/35
RA	5054	.	1	853190	0	G	A	consensus_score=255.6	frequency=1	major_base=A	major_cov=57/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/38
RA	5055	.	1	853238	0	G	A	consensus_score=269.1	frequency=1	major_base=A	major_cov=58/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/41
RA	5056	.	1	853244	0	G	A	consensus_score=292.7	frequency=1	major_base=A	major_cov=59/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/43
RA	5057	.	1	853261	0	T	G	consensus_score=285.1	frequency=1	major_base=G	major_cov=56/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/42
RA	5058	.	1	853273	0	C	T	consensus_score=264.3	frequency=1	major_base=T	major_cov=54/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/43
RA	5059	.	1	853281	0	T	C	consensus_score=274.7	frequency=1	major_base=C	major_cov=51/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/43
RA	5060	.	1	853298	0	A	G	consensus_score=270.1	frequency=1	major_base=G	major_cov=48/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/49
RA	5061	.	1	853322	0	A	G	consensus_score=240.4	frequency=1	major_base=G	major_cov=37/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/46
RA	5062	.	1	853338	0	T	C	consensus_score=239.7	frequency=1	major_base=C	major_cov=38/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/45
RA	5063	.	1	853382	0	T	C	consensus_score=237.0	frequency=1	major_base=C	major_cov=39/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/44
RA	5064	.	1	853451	0	A	G	consensus_score=209.5	frequency=1	major_base=G	major_cov=35/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/38
RA	5065	.	1	853508	0	G	T	consensus_score=195.8	frequency=1	major_base=T	major_cov=33/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/41
RA	5066	.	1	853550	0	C	T	consensus_score=166.4	frequency=1	major_base=T	major_cov=27/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/35
RA	5067	.	1	853602	0	G	A	consensus_score=160.8	frequency=1	major_base=A	major_cov=26/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/34
RA	5068	.	1	853611	0	T	C	consensus_score=174.2	frequency=1	major_base=C	major_cov=26/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/36
RA	5069	.	1	853658	0	T	C	consensus_score=203.0	frequency=1	major_base=C	major_cov=31/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/40
RA	5070	.	1	853671	0	T	C	consensus_score=195.2	frequency=1	major_base=C	major_cov=29/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/42
RA	5071	.	1	853677	0	C	T	consensus_score=188.8	frequency=1	major_base=T	major_cov=30/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/41
RA	5072	.	1	853686	0	C	T	consensus_score=199.1	frequency=1	major_base=T	major_cov=30/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/45
RA	5073	.	1	853701	0	T	C	consensus_score=227.0	frequency=1	major_base=C	major_cov=28/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/50
RA	5074	.	1	853734	0	T	C	consensus_score=211.7	frequency=1	major_base=C	major_cov=26/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/47
RA	5075	.	1	853739	0	T	C	consensus_score=196.8	frequency=1	major_base=C	major_cov=25/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/43
RA	5076	.	1	853742	0	A	G	consensus_score=197.3	frequency=1	major_base=G	major_cov=25/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/43
RA	5077	.	1	853770	0	C	A	consensus_score=172.0	frequency=1	major_base=A	major_cov=25/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/39
RA	5078	.	1	853773	0	A	G	consensus_score=182.8	frequency=1	major_base=G	major_cov=25/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/39
RA	5079	.	1	853779	0	C	T	consensus_score=166.2	frequency=1	major_base=T	major_cov=25/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/38
RA	5080	.	1	853791	0	G	A	consensus_score=151.2	frequency=1	major_base=A	major_cov=22/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/35
RA	5081	.	1	853800	0	C	T	consensus_score=150.5	frequency=1	major_base=T	major_cov=20/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/33
RA	5082	.	1	853802	0	T	G	consensus_score=149.2	frequency=1	major_base=G	major_cov=20/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/33
RA	5083	.	1	853809	0	C	T	consensus_score=137.3	frequency=1	major_base=T	major_cov=21/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/32
RA	5084	.	1	853811	0	T	C	consensus_score=151.6	frequency=1	major_base=C	major_cov=21/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/32
RA	5085	.	1	853839	0	T	C	consensus_score=158.6	frequency=1	major_base=C	major_cov=22/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/33
RA	5086	.	1	853845	0	T	C	consensus_score=132.3	frequency=1	major_base=C	major_cov=18/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/31
RA	5087	.	1	853848	0	T	C	consensus_score=140.6	frequency=1	major_base=C	major_cov=18/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/31
RA	5088	.	1	853857	0	A	G	consensus_score=126.3	frequency=1	major_base=G	major_cov=15/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/31
RA	5089	.	1	853863	0	T	C	consensus_score=124.1	frequency=1	major_base=C	major_cov=15/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/31
RA	5090	.	1	853866	0	A	G	consensus_score=129.7	frequency=1	major_base=G	major_cov=15/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/31
RA	5091	.	1	853899	0	T	C	consensus_score=112.9	frequency=1	major_base=C	major_cov=11/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/29
RA	5092	.	1	853908	0	A	G	consensus_score=102.7	frequency=1	major_base=G	major_cov=10/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/27
RA	5093	.	1	853915	0	G	A	consensus_score=80.7	frequency=1	major_base=A	major_cov=8/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/23
RA	5094	.	1	853935	0	C	G	consensus_score=86.3	frequency=1	major_base=G	major_cov=10/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/22
RA	5095	.	1	853938	0	T	C	consensus_score=88.2	frequency=1	major_base=C	major_cov=10/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/22
RA	5096	.	1	853944	0	T	C	consensus_score=72.0	frequency=1	major_base=C	major_cov=10/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/18
RA	5097	.	1	853947	0	G	A	consensus_score=73.9	frequency=1	major_base=A	major_cov=10/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/18
RA	5098	.	1	853950	0	C	T	consensus_score=72.0	frequency=1	major_base=T	major_cov=10/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/18
RA	5099	.	1	853958	0	T	C	consensus_score=61.7	frequency=1	major_base=C	major_cov=8/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/15
RA	5100	.	1	853959	0	T	C	consensus_score=63.0	frequency=1	major_base=C	major_cov=8/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/15
RA	5101	.	1	853962	0	C	T	consensus_score=60.8	frequency=1	major_base=T	major_cov=8/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/15
RA	5102	.	1	853965	0	T	C	consensus_score=58.0	frequency=1	major_base=C	major_cov=8/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/15
RA	5103	.	1	853973	0	C	A	consensus_score=58.2	frequency=1	major_base=A	major_cov=8/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/15
RA	5104	.	1	853998	0	T	A	consensus_score=50.2	frequency=1	major_base=A	major_cov=9/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/12
RA	5105	.	1	854001	0	G	T	consensus_score=50.8	frequency=1	major_base=T	major_cov=9/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/12
RA	5106	.	1	854031	0	A	G	consensus_score=52.7	frequency=1	major_base=G	major_cov=9/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/11
RA	5107	.	1	854033	0	C	A	consensus_score=49.1	frequency=1	major_base=A	major_cov=9/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/11
RA	5108	.	1	854037	0	C	T	consensus_score=49.4	frequency=1	major_base=T	major_cov=9/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/11
RA	5109	.	1	854057	0	C	T	consensus_score=37.0	frequency=1	major_base=T	major_cov=7/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/9
RA	5110	.	1	854058	0	C	T	consensus_score=37.7	frequency=1	major_base=T	major_cov=7/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/9
RA	5111	.	1	854061	0	A	T	consensus_score=38.8	frequency=1	major_base=T	major_cov=7/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/9
RA	5112	.	1	854067	0	G	A	consensus_score=44.0	frequency=1	major_base=A	major_cov=9/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/9
RA	5113	.	1	854078	0	T	C	consensus_score=35.1	frequency=1	major_base=C	major_cov=8/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/6
RA	5114	.	1	854115	0	A	G	consensus_score=27.0	frequency=1	major_base=G	major_cov=6/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/5
RA	5115	.	1	854121	0	G	A	consensus_score=17.9	frequency=1	major_base=A	major_cov=5/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/4
RA	5116	.	1	854129	0	C	T	consensus_score=18.8	frequency=1	major_base=T	major_cov=6/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/3
RA	5117	.	1	854134	0	G	A	consensus_score=21.5	frequency=1	major_base=A	major_cov=7/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/3
RA	5118	.	1	854138	0	A	G	consensus_score=17.7	frequency=1	major_base=G	major_cov=6/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/2
RA	5119	.	1	854151	0	G	A	consensus_score=12.6	frequency=1	major_base=A	major_cov=6/1	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/1	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/1
RA	5120	.	1	854157	0	T	C	consensus_score=14.2	frequency=1	major_base=C	major_cov=6/1	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/1	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/1
RA	5121	.	1	854160	0	A	G	consensus_score=13.2	frequency=1	major_base=G	major_cov=6/1	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/1	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/1
RA	5122	.	1	854161	0	A	C	consensus_score=13.9	frequency=1	major_base=C	major_cov=6/1	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/1	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/1
RA	5123	.	1	854166	0	C	T	consensus_score=13.2	frequency=1	major_base=T	major_cov=6/1	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/1	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/1
RA	5124	.	1	854171	0	G	C	consensus_score=14.5	frequency=1	major_base=C	major_cov=6/1	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/1	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/1
RA	5125	.	1	854175	0	G	A	consensus_score=12.2	frequency=1	major_base=A	major_cov=6/1	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/1	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/1
RA	5126	.	1	854180	0	A	G	consensus_score=14.9	frequency=1	major_base=G	major_cov=6/1	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/1	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/1
RA	5127	.	1	854181	0	C	T	consensus_score=13.2	frequency=1	major_base=T	major_cov=6/1	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/1	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/1
RA	5128	.	1	854214	0	G	A	consensus_score=29.0	frequency=1	major_base=A	major_cov=7/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/6
RA	5129	.	1	854217	0	T	C	consensus_score=31.8	frequency=1	major_base=C	major_cov=7/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/6
RA	5130	.	1	854219	0	C	T	consensus_score=29.1	frequency=1	major_base=T	major_cov=7/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/6
RA	5131	.	1	854226	0	G	A	consensus_score=28.8	frequency=1	major_base=A	major_cov=7/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/6
RA	5132	.	1	854228	0	T	C	consensus_score=30.7	frequency=1	major_base=C	major_cov=7/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/6
RA	5133	.	1	854229	0	A	G	consensus_score=29.6	frequency=1	major_base=G	major_cov=7/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/6
RA	5134	.	1	854238	0	A	G	consensus_score=37.5	frequency=1	major_base=G	major_cov=7/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/8
RA	5135	.	1	854244	0	T	C	consensus_score=38.1	frequency=1	major_base=C	major_cov=7/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/8
RA	5136	.	1	854250	0	T	C	consensus_score=50.5	frequency=1	major_base=C	major_cov=9/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/10
RA	5137	.	1	854253	0	T	C	consensus_score=50.1	frequency=1	major_base=C	major_cov=9/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/10
RA	5138	.	1	854271	0	T	C	consensus_score=53.5	frequency=1	major_base=C	major_cov=11/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/9
RA	5139	.	1	854277	0	C	T	consensus_score=48.5	frequency=1	major_base=T	major_cov=11/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/9
RA	5140	.	1	854281	0	T	C	consensus_score=50.5	frequency=1	major_base=C	major_cov=10/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/9
RA	5141	.	1	854282	0	T	C	consensus_score=50.6	frequency=1	major_base=C	major_cov=10/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/9
RA	5142	.	1	854286	0	A	G	consensus_score=51.3	frequency=1	major_base=G	major_cov=10/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/9
RA	5143	.	1	854291	0	C	T	consensus_score=45.9	frequency=1	major_base=T	major_cov=10/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/9
RA	5144	.	1	854295	0	G	A	consensus_score=46.0	frequency=1	major_base=A	major_cov=10/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/9
RA	5145	.	1	854299	0	C	T	bias_e_value=2109140	bias_p_value=1	consensus_score=39.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=9/9	major_frequency=9.474e-01	minor_base=C	minor_cov=1/0	new_cov=9/9	polymorphism_frequency=9.474e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=1/0	total_cov=10/9
RA	5146	.	1	854302	0	T	C	consensus_score=50.7	frequency=1	major_base=C	major_cov=10/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/9
RA	5147	.	1	854303	0	C	T	consensus_score=44.8	frequency=1	major_base=T	major_cov=10/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/9
RA	5148	.	1	854333	0	C	T	consensus_score=72.8	frequency=1	major_base=T	major_cov=13/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/15
RA	5149	.	1	854337	0	C	T	consensus_score=67.8	frequency=1	major_base=T	major_cov=12/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/15
RA	5150	.	1	854340	0	T	C	consensus_score=74.4	frequency=1	major_base=C	major_cov=12/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/15
RA	5151	.	1	854345	0	A	G	consensus_score=71.3	frequency=1	major_base=G	major_cov=12/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/14
RA	5152	.	1	854346	0	T	C	consensus_score=71.1	frequency=1	major_base=C	major_cov=12/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/14
RA	5153	.	1	854356	0	T	C	consensus_score=88.2	frequency=1	major_base=C	major_cov=16/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/16
RA	5154	.	1	854361	0	G	A	consensus_score=84.4	frequency=1	major_base=A	major_cov=17/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/16
RA	5155	.	1	854373	0	G	C	consensus_score=79.1	frequency=1	major_base=C	major_cov=15/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/15
RA	5156	.	1	854374	0	G	A	consensus_score=75.7	frequency=1	major_base=A	major_cov=15/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/15
RA	5157	.	1	854375	0	C	A	consensus_score=75.7	frequency=1	major_base=A	major_cov=15/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/15
RA	5158	.	1	854379	0	C	T	consensus_score=76.2	frequency=1	major_base=T	major_cov=15/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/15
RA	5159	.	1	854387	0	T	A	consensus_score=75.3	frequency=1	major_base=A	major_cov=15/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/15
RA	5160	.	1	854388	0	A	C	consensus_score=79.5	frequency=1	major_base=C	major_cov=15/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/15
RA	5161	.	1	854390	0	T	C	consensus_score=80.4	frequency=1	major_base=C	major_cov=15/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/15
RA	5162	.	1	854400	0	C	G	consensus_score=110.3	frequency=1	major_base=G	major_cov=19/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/20
RA	5163	.	1	854408	0	G	A	consensus_score=99.5	frequency=1	major_base=A	major_cov=19/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/20
RA	5164	.	1	854409	0	C	T	consensus_score=102.9	frequency=1	major_base=T	major_cov=19/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/20
RA	5165	.	1	854418	0	T	C	consensus_score=118.9	frequency=1	major_base=C	major_cov=23/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/19
RA	5166	.	1	854420	0	A	G	consensus_score=118.1	frequency=1	major_base=G	major_cov=23/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/19
RA	5167	.	1	854427	0	T	C	consensus_score=151.1	frequency=1	major_base=C	major_cov=30/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/23
RA	5168	.	1	854433	0	C	T	consensus_score=158.7	frequency=1	major_base=T	major_cov=33/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/26
RA	5169	.	1	854465	0	G	A	consensus_score=183.0	frequency=1	major_base=A	major_cov=38/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/31
RA	5170	.	1	854483	0	T	C	consensus_score=237.5	frequency=1	major_base=C	major_cov=42/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/40
RA	5171	.	1	854489	0	G	A	consensus_score=228.5	frequency=1	major_base=A	major_cov=43/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/42
RA	5172	.	1	854564	0	T	C	consensus_score=302.0	frequency=1	major_base=C	major_cov=52/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/51
RA	5173	.	1	854588	0	A	C	consensus_score=281.3	frequency=1	major_base=C	major_cov=50/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/53
RA	5174	.	1	854597	0	C	T	consensus_score=278.6	frequency=1	major_base=T	major_cov=51/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/52
RA	5175	.	1	854603	0	A	G	consensus_score=288.9	frequency=1	major_base=G	major_cov=53/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/51
RA	5176	.	1	854621	0	A	G	consensus_score=292.9	frequency=1	major_base=G	major_cov=51/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/51
RA	5177	.	1	854651	0	C	T	consensus_score=261.7	frequency=1	major_base=T	major_cov=48/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/49
RA	5178	.	1	854669	0	G	C	consensus_score=243.5	frequency=1	major_base=C	major_cov=39/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/49
RA	5179	.	1	854678	0	A	G	bias_e_value=1092560	bias_p_value=0.518012	consensus_score=201.9	fisher_strand_p_value=0.198135	frequency=1	ks_quality_p_value=0.997305	major_base=G	major_cov=33/43	major_frequency=9.744e-01	minor_base=A	minor_cov=2/0	new_cov=33/43	polymorphism_frequency=9.744e-01	polymorphism_score=-5.8	prediction=consensus	ref_cov=2/0	total_cov=35/43
RA	5180	.	1	854690	0	G	A	consensus_score=209.9	frequency=1	major_base=A	major_cov=33/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/41
RA	5181	.	1	854702	0	G	C	consensus_score=191.3	frequency=1	major_base=C	major_cov=28/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/42
RA	5182	.	1	854714	0	G	A	consensus_score=146.6	frequency=1	major_base=A	major_cov=23/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/31
RA	5183	.	1	854720	0	A	G	consensus_score=120.8	frequency=1	major_base=G	major_cov=22/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/21
RA	5184	.	1	854721	0	C	T	consensus_score=114.7	frequency=1	major_base=T	major_cov=22/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/21
RA	5185	.	1	854726	0	G	A	consensus_score=114.2	frequency=1	major_base=A	major_cov=22/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/21
RA	5186	.	1	854729	0	G	A	consensus_score=116.5	frequency=1	major_base=A	major_cov=22/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/21
RA	5187	.	1	854750	0	G	A	consensus_score=94.4	frequency=1	major_base=A	major_cov=17/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/19
RA	5188	.	1	854753	0	A	G	consensus_score=97.1	frequency=1	major_base=G	major_cov=17/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/19
RA	5189	.	1	854756	0	G	A	consensus_score=94.7	frequency=1	major_base=A	major_cov=17/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/19
RA	5190	.	1	854759	0	T	C	consensus_score=100.3	frequency=1	major_base=C	major_cov=17/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/19
RA	5191	.	1	854786	0	G	A	consensus_score=68.0	frequency=1	major_base=A	major_cov=11/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/15
RA	5192	.	1	854789	0	T	G	consensus_score=68.2	frequency=1	major_base=G	major_cov=11/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/15
RA	5193	.	1	854800	0	A	T	consensus_score=49.9	frequency=1	major_base=T	major_cov=8/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/11
RA	5194	.	1	854802	0	A	G	consensus_score=47.9	frequency=1	major_base=G	major_cov=8/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/11
RA	5195	.	1	854804	0	A	G	consensus_score=46.8	frequency=1	major_base=G	major_cov=8/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/11
RA	5196	.	1	854807	0	A	G	consensus_score=48.1	frequency=1	major_base=G	major_cov=8/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/11
RA	5197	.	1	854813	0	G	C	consensus_score=51.2	frequency=1	major_base=C	major_cov=8/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/11
RA	5198	.	1	854819	0	T	A	consensus_score=45.5	frequency=1	major_base=A	major_cov=8/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/11
RA	5199	.	1	854821	0	C	A	consensus_score=45.5	frequency=1	major_base=A	major_cov=8/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/11
RA	5200	.	1	854822	0	A	G	consensus_score=49.9	frequency=1	major_base=G	major_cov=8/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/11
RA	5201	.	1	854824	0	T	G	consensus_score=47.1	frequency=1	major_base=G	major_cov=8/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/11
RA	5202	.	1	854825	0	A	G	consensus_score=46.6	frequency=1	major_base=G	major_cov=8/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/11
RA	5203	.	1	854828	0	C	T	consensus_score=46.9	frequency=1	major_base=T	major_cov=8/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/11
RA	5204	.	1	854829	0	T	C	consensus_score=49.3	frequency=1	major_base=C	major_cov=8/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/11
RA	5205	.	1	854834	0	G	A	consensus_score=86.2	frequency=1	major_base=A	major_cov=14/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/19
RA	5206	.	1	854840	0	C	T	consensus_score=89.0	frequency=1	major_base=T	major_cov=15/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/19
RA	5207	.	1	854843	0	A	G	consensus_score=94.4	frequency=1	major_base=G	major_cov=15/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/19
RA	5208	.	1	854852	0	A	G	consensus_score=91.1	frequency=1	major_base=G	major_cov=15/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/19
RA	5209	.	1	854864	0	G	T	consensus_score=99.6	frequency=1	major_base=T	major_cov=16/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/22
RA	5210	.	1	854867	0	A	T	consensus_score=98.4	frequency=1	major_base=T	major_cov=16/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/22
RA	5211	.	1	854882	0	G	A	bias_e_value=2106410	bias_p_value=0.998704	consensus_score=119.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.949522	major_base=A	major_cov=21/22	major_frequency=9.773e-01	minor_base=T	minor_cov=0/1	new_cov=21/22	polymorphism_frequency=9.773e-01	polymorphism_score=-3.6	prediction=consensus	ref_cov=0/0	total_cov=21/23
RA	5212	.	1	854888	0	T	C	consensus_score=128.6	frequency=1	major_base=C	major_cov=21/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/24
RA	5213	.	1	854894	0	T	C	consensus_score=128.2	frequency=1	major_base=C	major_cov=21/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/24
RA	5214	.	1	854906	0	A	T	consensus_score=119.6	frequency=1	major_base=T	major_cov=21/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/22
RA	5215	.	1	854907	0	G	A	consensus_score=113.7	frequency=1	major_base=A	major_cov=21/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/22
RA	5216	.	1	854909	0	A	G	consensus_score=116.6	frequency=1	major_base=G	major_cov=21/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/22
RA	5217	.	1	854911	0	C	T	consensus_score=113.9	frequency=1	major_base=T	major_cov=21/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/22
RA	5218	.	1	854912	0	T	A	consensus_score=119.4	frequency=1	major_base=A	major_cov=21/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/22
RA	5219	.	1	854921	0	C	T	consensus_score=124.4	frequency=1	major_base=T	major_cov=23/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/25
RA	5220	.	1	854924	0	T	A	consensus_score=127.5	frequency=1	major_base=A	major_cov=23/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/25
RA	5221	.	1	854948	0	C	T	consensus_score=139.4	frequency=1	major_base=T	major_cov=27/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/26
RA	5222	.	1	855047	0	A	G	consensus_score=100.3	frequency=1	major_base=G	major_cov=22/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/16
RA	5223	.	1	855116	0	G	A	consensus_score=49.5	frequency=1	major_base=A	major_cov=9/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/11
RA	5224	.	1	855121	0	T	C	consensus_score=50.1	frequency=1	major_base=C	major_cov=9/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/10
RA	5225	.	1	855122	0	C	T	consensus_score=46.5	frequency=1	major_base=T	major_cov=9/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/10
RA	5226	.	1	855129	0	C	T	consensus_score=51.4	frequency=1	major_base=T	major_cov=10/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/11
RA	5227	.	1	855169	0	T	C	consensus_score=54.3	frequency=1	major_base=C	major_cov=8/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/12
RA	5228	.	1	855183	0	C	T	consensus_score=47.6	frequency=1	major_base=T	major_cov=8/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/12
RA	5229	.	1	855203	0	T	C	consensus_score=53.2	frequency=1	major_base=C	major_cov=8/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/12
RA	5230	.	1	855211	0	C	T	consensus_score=58.5	frequency=1	major_base=T	major_cov=10/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/13
RA	5231	.	1	855245	0	G	A	consensus_score=54.3	frequency=1	major_base=A	major_cov=10/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/12
RA	5232	.	1	855278	0	C	T	consensus_score=39.1	frequency=1	major_base=T	major_cov=7/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/10
RA	5233	.	1	855281	0	C	T	consensus_score=39.9	frequency=1	major_base=T	major_cov=7/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/10
RA	5234	.	1	855293	0	T	A	consensus_score=37.5	frequency=1	major_base=A	major_cov=7/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/9
RA	5235	.	1	855308	0	C	T	consensus_score=31.9	frequency=1	major_base=T	major_cov=5/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/9
RA	5236	.	1	855316	0	A	G	consensus_score=26.5	frequency=1	major_base=G	major_cov=4/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/7
RA	5237	.	1	855317	0	A	G	consensus_score=26.1	frequency=1	major_base=G	major_cov=4/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/7
RA	5238	.	1	855318	0	T	C	consensus_score=25.8	frequency=1	major_base=C	major_cov=4/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/7
RA	5239	.	1	855323	0	T	C	consensus_score=26.1	frequency=1	major_base=C	major_cov=4/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/7
RA	5240	.	1	855340	0	G	A	consensus_score=25.7	frequency=1	major_base=A	major_cov=4/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/7
RA	5241	.	1	855351	0	G	A	consensus_score=18.7	frequency=1	major_base=A	major_cov=3/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/6
RA	5242	.	1	855352	0	T	C	consensus_score=20.4	frequency=1	major_base=C	major_cov=3/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/6
RA	5243	.	1	855357	0	C	T	consensus_score=17.3	frequency=1	major_base=T	major_cov=3/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/6
RA	5244	.	1	855367	0	G	A	consensus_score=15.8	frequency=1	major_base=A	major_cov=3/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/5
RA	5245	.	1	855388	0	T	A	consensus_score=13.1	frequency=1	major_base=A	major_cov=2/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=2/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=2/5
RA	5246	.	1	855392	0	A	G	consensus_score=14.7	frequency=1	major_base=G	major_cov=2/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=2/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=2/5
RA	5247	.	1	855397	0	A	G	consensus_score=12.7	frequency=1	major_base=G	major_cov=2/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=2/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=2/5
RA	5248	.	1	855405	0	G	A	bias_e_value=2107830	bias_p_value=0.999377	consensus_score=10.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.964916	major_base=A	major_cov=2/5	major_frequency=8.750e-01	minor_base=G	minor_cov=0/1	new_cov=2/5	polymorphism_frequency=8.750e-01	polymorphism_score=-3.8	prediction=consensus	ref_cov=0/1	total_cov=2/6
RA	5249	.	1	855408	0	G	A	bias_e_value=2089570	bias_p_value=0.990718	consensus_score=10.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.866878	major_base=A	major_cov=2/5	major_frequency=8.750e-01	minor_base=G	minor_cov=0/1	new_cov=2/5	polymorphism_frequency=8.750e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=0/1	total_cov=2/6
RA	5250	.	1	855409	0	T	A	bias_e_value=2109140	bias_p_value=1	consensus_score=12.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=2/5	major_frequency=8.750e-01	minor_base=T	minor_cov=0/1	new_cov=2/5	polymorphism_frequency=8.750e-01	polymorphism_score=-2.8	prediction=consensus	ref_cov=0/1	total_cov=2/6
RA	5251	.	1	855412	0	G	A	bias_e_value=2107830	bias_p_value=0.999377	consensus_score=10.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.964916	major_base=A	major_cov=2/5	major_frequency=8.750e-01	minor_base=G	minor_cov=0/1	new_cov=2/5	polymorphism_frequency=8.750e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=0/1	total_cov=2/6
RA	5252	.	1	855415	0	A	G	bias_e_value=2107830	bias_p_value=0.999377	consensus_score=12.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.964916	major_base=G	major_cov=2/5	major_frequency=8.750e-01	minor_base=A	minor_cov=0/1	new_cov=2/5	polymorphism_frequency=8.750e-01	polymorphism_score=-3.9	prediction=consensus	ref_cov=0/1	total_cov=2/6
RA	5253	.	1	855420	0	T	C	bias_e_value=2109140	bias_p_value=1	consensus_score=11.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=2/5	major_frequency=8.750e-01	minor_base=T	minor_cov=0/1	new_cov=2/5	polymorphism_frequency=8.750e-01	polymorphism_score=-3.9	prediction=consensus	ref_cov=0/1	total_cov=2/6
RA	5254	.	1	855432	0	G	T	bias_e_value=2107830	bias_p_value=0.999377	consensus_score=12.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.964916	major_base=T	major_cov=2/5	major_frequency=8.750e-01	minor_base=G	minor_cov=0/1	new_cov=2/5	polymorphism_frequency=8.750e-01	polymorphism_score=-3.2	prediction=consensus	ref_cov=0/1	total_cov=2/6
RA	5255	.	1	855439	0	A	G	bias_e_value=2107830	bias_p_value=0.999377	consensus_score=10.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.964916	major_base=G	major_cov=2/5	major_frequency=8.750e-01	minor_base=A	minor_cov=0/1	new_cov=2/5	polymorphism_frequency=8.750e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=0/1	total_cov=2/6
RA	5256	.	1	855442	0	C	A	bias_e_value=2020950	bias_p_value=0.958184	consensus_score=13.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.725112	major_base=A	major_cov=2/5	major_frequency=8.750e-01	minor_base=C	minor_cov=0/1	new_cov=2/5	polymorphism_frequency=8.750e-01	polymorphism_score=-3.4	prediction=consensus	ref_cov=0/1	total_cov=2/6
RA	5257	.	1	855478	0	T	A	bias_e_value=1404840	bias_p_value=0.666072	consensus_score=10.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.304076	major_base=A	major_cov=1/5	major_frequency=8.571e-01	minor_base=T	minor_cov=0/1	new_cov=1/5	polymorphism_frequency=8.571e-01	polymorphism_score=-2.7	prediction=consensus	ref_cov=0/1	total_cov=1/6
RA	5258	.	1	855484	0	C	T	consensus_score=14.8	frequency=1	major_base=T	major_cov=1/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=1/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=1/6
RA	5259	.	1	855499	0	A	C	bias_e_value=2109140	bias_p_value=1	consensus_score=14.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=1/6	major_frequency=8.750e-01	minor_base=A	minor_cov=0/1	new_cov=1/6	polymorphism_frequency=8.750e-01	polymorphism_score=-3.1	prediction=consensus	ref_cov=0/1	total_cov=1/7
RA	5260	.	1	855502	0	G	A	bias_e_value=2107830	bias_p_value=0.999377	consensus_score=10.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.964916	major_base=A	major_cov=1/6	major_frequency=8.750e-01	minor_base=G	minor_cov=0/1	new_cov=1/6	polymorphism_frequency=8.750e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=0/1	total_cov=1/7
RA	5261	.	1	855511	0	T	A	bias_e_value=2072180	bias_p_value=0.982477	consensus_score=18.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.818731	major_base=A	major_cov=2/7	major_frequency=9.000e-01	minor_base=T	minor_cov=0/1	new_cov=2/7	polymorphism_frequency=9.000e-01	polymorphism_score=-2.9	prediction=consensus	ref_cov=0/1	total_cov=2/8
RA	5262	.	1	855517	0	A	T	bias_e_value=2109140	bias_p_value=1	consensus_score=19.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=2/7	major_frequency=9.000e-01	minor_base=A	minor_cov=0/1	new_cov=2/7	polymorphism_frequency=9.000e-01	polymorphism_score=-4.9	prediction=consensus	ref_cov=0/1	total_cov=2/8
RA	5263	.	1	855519	0	C	T	bias_e_value=2109140	bias_p_value=1	consensus_score=16.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=2/7	major_frequency=9.000e-01	minor_base=C	minor_cov=0/1	new_cov=2/7	polymorphism_frequency=9.000e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=0/1	total_cov=2/8
RA	5264	.	1	855520	0	C	T	consensus_score=22.2	frequency=1	major_base=T	major_cov=2/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=2/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=2/8
RA	5265	.	1	855526	0	G	A	bias_e_value=2109140	bias_p_value=1	consensus_score=22.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=3/8	major_frequency=9.167e-01	minor_base=G	minor_cov=0/1	new_cov=3/8	polymorphism_frequency=9.167e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=0/1	total_cov=3/9
RA	5266	.	1	855535	0	A	G	bias_e_value=2108250	bias_p_value=0.999576	consensus_score=37.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.971017	major_base=G	major_cov=4/12	major_frequency=9.412e-01	minor_base=A	minor_cov=0/1	new_cov=4/12	polymorphism_frequency=9.412e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=0/1	total_cov=4/13
RA	5267	.	1	855546	0	A	T	bias_e_value=2100470	bias_p_value=0.995886	consensus_score=41.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.910677	major_base=T	major_cov=6/12	major_frequency=9.474e-01	minor_base=A	minor_cov=0/1	new_cov=6/12	polymorphism_frequency=9.474e-01	polymorphism_score=-3.1	prediction=consensus	ref_cov=0/1	total_cov=6/13
RA	5268	.	1	855547	0	A	T	bias_e_value=2109110	bias_p_value=0.999983	consensus_score=43.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.994169	major_base=T	major_cov=6/12	major_frequency=9.474e-01	minor_base=A	minor_cov=0/1	new_cov=6/12	polymorphism_frequency=9.474e-01	polymorphism_score=-3.1	prediction=consensus	ref_cov=0/1	total_cov=6/13
RA	5269	.	1	855565	0	C	G	bias_e_value=2108570	bias_p_value=0.999731	consensus_score=44.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.97688	major_base=G	major_cov=6/12	major_frequency=9.474e-01	minor_base=C	minor_cov=0/1	new_cov=6/12	polymorphism_frequency=9.474e-01	polymorphism_score=-3.6	prediction=consensus	ref_cov=0/1	total_cov=6/13
RA	5270	.	1	855568	0	C	T	bias_e_value=2068470	bias_p_value=0.980717	consensus_score=40.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.810158	major_base=T	major_cov=6/12	major_frequency=9.474e-01	minor_base=C	minor_cov=0/1	new_cov=6/12	polymorphism_frequency=9.474e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=0/1	total_cov=6/13
RA	5271	.	1	855571	0	C	T	bias_e_value=2108570	bias_p_value=0.999731	consensus_score=37.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.97688	major_base=T	major_cov=6/12	major_frequency=9.474e-01	minor_base=C	minor_cov=0/1	new_cov=6/12	polymorphism_frequency=9.474e-01	polymorphism_score=-4.8	prediction=consensus	ref_cov=0/1	total_cov=6/13
RA	5272	.	1	855574	0	T	G	bias_e_value=2108570	bias_p_value=0.999731	consensus_score=45.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.97688	major_base=G	major_cov=6/12	major_frequency=9.474e-01	minor_base=T	minor_cov=0/1	new_cov=6/12	polymorphism_frequency=9.474e-01	polymorphism_score=-3.6	prediction=consensus	ref_cov=0/1	total_cov=6/13
RA	5273	.	1	855577	0	T	G	bias_e_value=2109110	bias_p_value=0.999983	consensus_score=44.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.994169	major_base=G	major_cov=6/12	major_frequency=9.474e-01	minor_base=T	minor_cov=0/1	new_cov=6/12	polymorphism_frequency=9.474e-01	polymorphism_score=-5.5	prediction=consensus	ref_cov=0/1	total_cov=6/13
RA	5274	.	1	855580	0	G	A	bias_e_value=2106320	bias_p_value=0.998663	consensus_score=40.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.948729	major_base=A	major_cov=6/12	major_frequency=9.474e-01	minor_base=G	minor_cov=0/1	new_cov=6/12	polymorphism_frequency=9.474e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=0/1	total_cov=6/13
RA	5275	.	1	855589	0	T	A	bias_e_value=2109140	bias_p_value=1	consensus_score=43.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=6/12	major_frequency=9.474e-01	minor_base=T	minor_cov=0/1	new_cov=6/12	polymorphism_frequency=9.474e-01	polymorphism_score=-3.2	prediction=consensus	ref_cov=0/1	total_cov=6/13
RA	5276	.	1	855592	0	A	T	bias_e_value=2109140	bias_p_value=1	consensus_score=42.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=6/12	major_frequency=9.474e-01	minor_base=A	minor_cov=0/1	new_cov=6/12	polymorphism_frequency=9.474e-01	polymorphism_score=-3.1	prediction=consensus	ref_cov=0/1	total_cov=6/13
RA	5277	.	1	855594	0	A	C	bias_e_value=2108570	bias_p_value=0.999731	consensus_score=48.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.97688	major_base=C	major_cov=6/12	major_frequency=9.474e-01	minor_base=A	minor_cov=0/1	new_cov=6/12	polymorphism_frequency=9.474e-01	polymorphism_score=-3.4	prediction=consensus	ref_cov=0/1	total_cov=6/13
RA	5278	.	1	855595	0	G	A	consensus_score=46.1	frequency=1	major_base=A	major_cov=6/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/13
RA	5279	.	1	855613	0	C	T	bias_e_value=1740680	bias_p_value=0.825304	consensus_score=82.7	fisher_strand_p_value=0.470588	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=18/15	major_frequency=9.706e-01	minor_base=C	minor_cov=0/1	new_cov=18/15	polymorphism_frequency=9.706e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=0/1	total_cov=18/16
RA	5280	.	1	855616	0	T	C	consensus_score=91.0	frequency=1	major_base=C	major_cov=18/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/16
RA	5281	.	1	855628	0	T	C	bias_e_value=2107840	bias_p_value=0.999382	consensus_score=93.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.965063	major_base=C	major_cov=19/18	major_frequency=9.737e-01	minor_base=T	minor_cov=0/1	new_cov=19/18	polymorphism_frequency=9.737e-01	polymorphism_score=-4.7	prediction=consensus	ref_cov=0/1	total_cov=19/19
RA	5282	.	1	855652	0	T	C	bias_e_value=1596060	bias_p_value=0.756735	consensus_score=137.8	fisher_strand_p_value=0.48	frequency=1	ks_quality_p_value=0.811412	major_base=C	major_cov=26/23	major_frequency=9.800e-01	minor_base=T	minor_cov=0/1	new_cov=26/23	polymorphism_frequency=9.800e-01	polymorphism_score=-5.2	prediction=consensus	ref_cov=0/1	total_cov=26/24
RA	5283	.	1	855658	0	G	T	consensus_score=146.3	frequency=1	major_base=T	major_cov=30/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/25
RA	5284	.	1	855673	0	G	C	consensus_score=171.6	frequency=1	major_base=C	major_cov=34/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/28
RA	5285	.	1	855680	0	C	G	consensus_score=182.0	frequency=1	major_base=G	major_cov=36/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/30
RA	5286	.	1	855718	0	G	A	consensus_score=199.1	frequency=1	major_base=A	major_cov=39/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/35
RA	5287	.	1	855721	0	A	G	consensus_score=213.0	frequency=1	major_base=G	major_cov=39/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/35
RA	5288	.	1	855727	0	T	C	consensus_score=221.4	frequency=1	major_base=C	major_cov=42/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/38
RA	5289	.	1	855739	0	T	C	consensus_score=246.0	frequency=1	major_base=C	major_cov=46/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/39
RA	5290	.	1	855766	0	G	A	consensus_score=195.1	frequency=1	major_base=A	major_cov=42/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/31
RA	5291	.	1	855769	0	C	T	consensus_score=200.7	frequency=1	major_base=T	major_cov=42/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/31
RA	5292	.	1	855772	0	A	G	consensus_score=200.9	frequency=1	major_base=G	major_cov=42/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/31
RA	5293	.	1	855796	0	C	T	consensus_score=209.9	frequency=1	major_base=T	major_cov=43/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/35
RA	5294	.	1	855798	0	A	G	consensus_score=224.1	frequency=1	major_base=G	major_cov=43/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/35
RA	5295	.	1	855814	0	G	A	consensus_score=211.4	frequency=1	major_base=A	major_cov=45/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/34
RA	5296	.	1	855817	0	T	C	consensus_score=229.1	frequency=1	major_base=C	major_cov=45/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/34
RA	5297	.	1	855829	0	T	C	consensus_score=228.7	frequency=1	major_base=C	major_cov=46/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/36
RA	5298	.	1	855859	0	C	T	consensus_score=213.1	frequency=1	major_base=T	major_cov=41/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/38
RA	5299	.	1	855865	0	C	A	consensus_score=219.0	frequency=1	major_base=A	major_cov=43/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/37
RA	5300	.	1	855883	0	C	T	consensus_score=215.5	frequency=1	major_base=T	major_cov=45/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/35
RA	5301	.	1	855897	0	G	A	consensus_score=214.8	frequency=1	major_base=A	major_cov=39/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/37
RA	5302	.	1	855898	0	C	T	consensus_score=210.5	frequency=1	major_base=T	major_cov=39/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/37
RA	5303	.	1	855901	0	G	A	consensus_score=204.1	frequency=1	major_base=A	major_cov=39/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/37
RA	5304	.	1	855915	0	G	A	consensus_score=206.0	frequency=1	major_base=A	major_cov=42/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/35
RA	5305	.	1	855946	0	G	A	consensus_score=206.1	frequency=1	major_base=A	major_cov=40/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/36
RA	5306	.	1	855964	0	T	G	consensus_score=209.3	frequency=1	major_base=G	major_cov=39/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/34
RA	5307	.	1	855966	0	A	G	consensus_score=211.8	frequency=1	major_base=G	major_cov=39/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/34
RA	5308	.	1	855967	0	G	A	consensus_score=198.2	frequency=1	major_base=A	major_cov=39/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/34
RA	5309	.	1	855979	0	A	G	consensus_score=238.8	frequency=1	major_base=G	major_cov=48/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/38
RA	5310	.	1	856012	0	C	T	consensus_score=245.8	frequency=1	major_base=T	major_cov=56/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/33
RA	5311	.	1	856015	0	G	A	consensus_score=238.3	frequency=1	major_base=A	major_cov=56/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/33
RA	5312	.	1	856027	0	A	G	consensus_score=255.2	frequency=1	major_base=G	major_cov=58/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/34
RA	5313	.	1	856036	0	G	A	consensus_score=243.2	frequency=1	major_base=A	major_cov=55/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/36
RA	5314	.	1	856042	0	C	T	consensus_score=239.3	frequency=1	major_base=T	major_cov=53/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/36
RA	5315	.	1	856048	0	T	A	consensus_score=241.0	frequency=1	major_base=A	major_cov=53/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/36
RA	5316	.	1	856054	0	A	G	consensus_score=242.4	frequency=1	major_base=G	major_cov=52/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/36
RA	5317	.	1	856066	0	A	G	consensus_score=231.9	frequency=1	major_base=G	major_cov=50/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/34
RA	5318	.	1	856087	0	T	G	consensus_score=247.2	frequency=1	major_base=G	major_cov=51/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/34
RA	5319	.	1	856088	0	G	C	consensus_score=236.4	frequency=1	major_base=C	major_cov=51/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/34
RA	5320	.	1	856097	0	T	C	consensus_score=250.0	frequency=1	major_base=C	major_cov=54/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/33
RA	5321	.	1	856108	0	T	C	consensus_score=252.7	frequency=1	major_base=C	major_cov=53/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/35
RA	5322	.	1	856117	0	A	G	consensus_score=257.6	frequency=1	major_base=G	major_cov=50/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/39
RA	5323	.	1	856129	0	G	A	consensus_score=239.0	frequency=1	major_base=A	major_cov=50/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/38
RA	5324	.	1	856138	0	T	C	consensus_score=238.0	frequency=1	major_base=C	major_cov=52/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/33
RA	5325	.	1	856153	0	A	T	consensus_score=218.7	frequency=1	major_base=T	major_cov=46/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/35
RA	5326	.	1	856171	0	G	A	consensus_score=231.1	frequency=1	major_base=A	major_cov=46/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/36
RA	5327	.	1	856177	0	A	G	consensus_score=217.5	frequency=1	major_base=G	major_cov=45/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/34
RA	5328	.	1	856219	0	G	A	consensus_score=208.8	frequency=1	major_base=A	major_cov=39/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/34
RA	5329	.	1	856276	0	A	G	consensus_score=165.4	frequency=1	major_base=G	major_cov=28/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/32
RA	5330	.	1	856306	0	A	G	consensus_score=170.9	frequency=1	major_base=G	major_cov=30/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/32
RA	5331	.	1	856324	0	G	A	consensus_score=168.8	frequency=1	major_base=A	major_cov=32/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/30
RA	5332	.	1	856345	0	A	G	consensus_score=176.6	frequency=1	major_base=G	major_cov=33/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/29
RA	5333	.	1	856371	0	T	C	consensus_score=176.7	frequency=1	major_base=C	major_cov=35/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/27
RA	5334	.	1	856378	0	T	C	consensus_score=175.9	frequency=1	major_base=C	major_cov=35/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/29
RA	5335	.	1	856384	0	T	C	consensus_score=169.9	frequency=1	major_base=C	major_cov=34/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/29
RA	5336	.	1	856387	0	T	A	consensus_score=174.6	frequency=1	major_base=A	major_cov=34/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/29
RA	5337	.	1	856429	0	T	C	consensus_score=161.2	frequency=1	major_base=C	major_cov=29/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/27
RA	5338	.	1	856432	0	A	T	bias_e_value=2109140	bias_p_value=1	consensus_score=144.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=28/27	major_frequency=9.821e-01	minor_base=C	minor_cov=1/0	new_cov=28/27	polymorphism_frequency=9.821e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/27
RA	5339	.	1	856434	0	T	C	consensus_score=153.5	frequency=1	major_base=C	major_cov=29/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/27
RA	5340	.	1	856440	0	C	A	consensus_score=158.1	frequency=1	major_base=A	major_cov=29/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/27
RA	5341	.	1	856444	0	G	C	consensus_score=154.3	frequency=1	major_base=C	major_cov=29/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/27
RA	5342	.	1	856455	0	C	T	bias_e_value=2109130	bias_p_value=0.999995	consensus_score=127.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.99674	major_base=T	major_cov=26/23	major_frequency=9.800e-01	minor_base=A	minor_cov=1/0	new_cov=26/23	polymorphism_frequency=9.800e-01	polymorphism_score=-5.8	prediction=consensus	ref_cov=0/0	total_cov=27/23
RA	5343	.	1	856456	0	A	G	consensus_score=142.8	frequency=1	major_base=G	major_cov=27/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/23
RA	5344	.	1	856457	0	C	T	consensus_score=131.7	frequency=1	major_base=T	major_cov=27/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/23
RA	5345	.	1	856458	0	C	T	consensus_score=133.1	frequency=1	major_base=T	major_cov=27/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/23
RA	5346	.	1	856459	0	G	A	consensus_score=132.3	frequency=1	major_base=A	major_cov=27/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/23
RA	5347	.	1	856473	0	C	T	consensus_score=149.4	frequency=1	major_base=T	major_cov=30/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/26
RA	5348	.	1	856477	0	G	A	consensus_score=158.4	frequency=1	major_base=A	major_cov=30/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/26
RA	5349	.	1	856504	0	C	T	consensus_score=151.5	frequency=1	major_base=T	major_cov=34/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/23
RA	5350	.	1	856506	0	G	A	bias_e_value=2109140	bias_p_value=1	consensus_score=149.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999374	major_base=A	major_cov=33/23	major_frequency=9.825e-01	minor_base=T	minor_cov=1/0	new_cov=33/23	polymorphism_frequency=9.825e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=0/0	total_cov=34/23
RA	5351	.	1	856545	0	T	C	consensus_score=179.3	frequency=1	major_base=C	major_cov=33/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/29
RA	5352	.	1	856555	0	A	G	consensus_score=147.9	frequency=1	major_base=G	major_cov=28/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/24
RA	5353	.	1	856558	0	T	C	consensus_score=148.0	frequency=1	major_base=C	major_cov=28/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/24
RA	5354	.	1	856560	0	G	A	consensus_score=138.4	frequency=1	major_base=A	major_cov=28/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/24
RA	5355	.	1	856608	0	G	A	consensus_score=115.3	frequency=1	major_base=A	major_cov=24/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/21
RA	5356	.	1	856615	0	T	C	consensus_score=122.0	frequency=1	major_base=C	major_cov=23/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/20
RA	5357	.	1	856619	0	C	T	consensus_score=106.0	frequency=1	major_base=T	major_cov=22/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/18
RA	5358	.	1	856636	0	A	T	consensus_score=102.3	frequency=1	major_base=T	major_cov=18/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/21
RA	5359	.	1	856646	0	A	G	consensus_score=111.5	frequency=1	major_base=G	major_cov=19/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/21
RA	5360	.	1	856658	0	C	T	consensus_score=97.3	frequency=1	major_base=T	major_cov=18/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/20
RA	5361	.	1	856670	0	C	T	consensus_score=98.3	frequency=1	major_base=T	major_cov=17/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/21
RA	5362	.	1	856714	0	A	G	consensus_score=97.4	frequency=1	major_base=G	major_cov=17/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/18
RA	5363	.	1	856733	0	A	C	consensus_score=85.9	frequency=1	major_base=C	major_cov=15/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/16
RA	5364	.	1	856754	0	A	G	consensus_score=62.7	frequency=1	major_base=G	major_cov=11/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/12
RA	5365	.	1	856757	0	T	C	consensus_score=62.3	frequency=1	major_base=C	major_cov=11/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/12
RA	5366	.	1	856762	0	T	C	consensus_score=47.4	frequency=1	major_base=C	major_cov=11/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/7
RA	5367	.	1	856763	0	G	A	consensus_score=42.0	frequency=1	major_base=A	major_cov=11/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/7
RA	5368	.	1	856778	0	G	A	consensus_score=41.0	frequency=1	major_base=A	major_cov=10/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/7
RA	5369	.	1	856786	0	T	C	consensus_score=38.8	frequency=1	major_base=C	major_cov=9/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/6
RA	5370	.	1	856788	0	T	A	consensus_score=34.2	frequency=1	major_base=A	major_cov=9/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/6
RA	5371	.	1	856790	0	C	A	consensus_score=33.6	frequency=1	major_base=A	major_cov=9/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/6
RA	5372	.	1	856793	0	G	A	consensus_score=35.6	frequency=1	major_base=A	major_cov=9/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/6
RA	5373	.	1	856798	0	C	T	consensus_score=36.4	frequency=1	major_base=T	major_cov=9/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/6
RA	5374	.	1	856817	0	A	G	consensus_score=24.5	frequency=1	major_base=G	major_cov=8/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/3
RA	5375	.	1	856823	0	A	G	consensus_score=23.5	frequency=1	major_base=G	major_cov=7/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/3
RA	5376	.	1	856829	0	T	G	consensus_score=25.1	frequency=1	major_base=G	major_cov=8/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/3
RA	5377	.	1	856838	0	T	C	consensus_score=31.7	frequency=1	major_base=C	major_cov=9/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/4
RA	5378	.	1	856841	0	G	A	consensus_score=30.6	frequency=1	major_base=A	major_cov=9/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/4
RA	5379	.	1	856858	0	A	C	consensus_score=28.3	frequency=1	major_base=C	major_cov=8/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/4
RA	5380	.	1	856862	0	C	T	consensus_score=19.7	frequency=1	major_base=T	major_cov=6/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/3
RA	5381	.	1	856864	0	T	A	consensus_score=18.1	frequency=1	major_base=A	major_cov=6/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/3
RA	5382	.	1	856865	0	T	C	consensus_score=19.9	frequency=1	major_base=C	major_cov=6/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/3
RA	5383	.	1	856883	0	G	T	consensus_score=13.4	frequency=1	major_base=T	major_cov=5/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/2
RA	5384	.	1	856892	0	A	G	consensus_score=17.2	frequency=1	major_base=G	major_cov=6/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/2
RA	5385	.	1	856913	0	G	A	consensus_score=16.3	frequency=1	major_base=A	major_cov=5/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/3
RA	5386	.	1	856915	0	C	T	consensus_score=16.8	frequency=1	major_base=T	major_cov=5/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/3
RA	5387	.	1	856916	0	A	G	consensus_score=17.3	frequency=1	major_base=G	major_cov=5/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/3
RA	5388	.	1	856919	0	G	A	consensus_score=17.5	frequency=1	major_base=A	major_cov=5/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/3
RA	5389	.	1	856922	0	G	A	consensus_score=17.0	frequency=1	major_base=A	major_cov=5/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/3
RA	5390	.	1	856928	0	G	A	consensus_score=19.8	frequency=1	major_base=A	major_cov=5/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/4
RA	5391	.	1	856940	0	G	A	consensus_score=24.5	frequency=1	major_base=A	major_cov=7/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/4
RA	5392	.	1	856946	0	C	T	consensus_score=24.6	frequency=1	major_base=T	major_cov=7/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/4
RA	5393	.	1	856961	0	C	A	consensus_score=26.3	frequency=1	major_base=A	major_cov=7/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/4
RA	5394	.	1	856967	0	A	G	consensus_score=24.8	frequency=1	major_base=G	major_cov=7/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/4
RA	5395	.	1	856971	0	C	T	consensus_score=25.2	frequency=1	major_base=T	major_cov=7/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/4
RA	5396	.	1	856995	0	C	T	consensus_score=29.8	frequency=1	major_base=T	major_cov=7/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/6
RA	5397	.	1	857017	0	C	T	consensus_score=31.9	frequency=1	major_base=T	major_cov=8/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/6
RA	5398	.	1	857033	0	C	T	consensus_score=32.3	frequency=1	major_base=T	major_cov=8/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/6
RA	5399	.	1	857036	0	A	G	consensus_score=33.3	frequency=1	major_base=G	major_cov=8/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/6
RA	5400	.	1	857039	0	A	G	consensus_score=33.4	frequency=1	major_base=G	major_cov=8/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/6
RA	5401	.	1	857087	0	C	T	consensus_score=74.2	frequency=1	major_base=T	major_cov=17/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/10
RA	5402	.	1	857090	0	A	G	consensus_score=69.5	frequency=1	major_base=G	major_cov=17/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/10
RA	5403	.	1	857107	0	G	A	consensus_score=68.0	frequency=1	major_base=A	major_cov=17/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/10
RA	5404	.	1	857108	0	A	G	consensus_score=73.6	frequency=1	major_base=G	major_cov=17/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/10
RA	5405	.	1	857123	0	G	A	consensus_score=78.7	frequency=1	major_base=A	major_cov=20/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/11
RA	5406	.	1	857132	0	C	A	consensus_score=84.1	frequency=1	major_base=A	major_cov=21/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/12
RA	5407	.	1	857137	0	T	C	consensus_score=87.0	frequency=1	major_base=C	major_cov=21/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/11
RA	5408	.	1	857189	0	T	C	consensus_score=113.5	frequency=1	major_base=C	major_cov=29/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/12
RA	5409	.	1	857192	0	A	G	consensus_score=124.0	frequency=1	major_base=G	major_cov=31/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/13
RA	5410	.	1	857204	0	G	A	consensus_score=129.2	frequency=1	major_base=A	major_cov=35/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/15
RA	5411	.	1	857222	0	T	C	consensus_score=175.7	frequency=1	major_base=C	major_cov=42/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/20
RA	5412	.	1	857240	0	C	T	consensus_score=174.3	frequency=1	major_base=T	major_cov=44/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/21
RA	5413	.	1	857288	0	A	G	consensus_score=211.8	frequency=1	major_base=G	major_cov=43/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/35
RA	5414	.	1	857291	0	T	C	consensus_score=221.6	frequency=1	major_base=C	major_cov=43/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/35
RA	5415	.	1	857330	0	G	A	consensus_score=256.7	frequency=1	major_base=A	major_cov=49/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/46
RA	5416	.	1	857336	0	G	T	consensus_score=253.1	frequency=1	major_base=T	major_cov=49/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/46
RA	5417	.	1	857343	0	G	A	consensus_score=275.7	frequency=1	major_base=A	major_cov=55/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/46
RA	5418	.	1	857378	0	C	T	consensus_score=257.4	frequency=1	major_base=T	major_cov=52/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/45
RA	5419	.	1	857381	0	A	G	consensus_score=282.6	frequency=1	major_base=G	major_cov=52/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/45
RA	5420	.	1	857405	0	G	A	consensus_score=282.1	frequency=1	major_base=A	major_cov=55/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/49
RA	5421	.	1	857438	0	G	T	consensus_score=255.1	frequency=1	major_base=T	major_cov=51/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/44
RA	5422	.	1	857485	0	T	C	consensus_score=224.6	frequency=1	major_base=C	major_cov=37/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/41
RA	5423	.	1	857516	0	G	A	consensus_score=202.5	frequency=1	major_base=A	major_cov=34/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/42
RA	5424	.	1	857522	0	C	T	consensus_score=185.6	frequency=1	major_base=T	major_cov=31/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/38
RA	5425	.	1	857545	0	C	T	consensus_score=183.8	frequency=1	major_base=T	major_cov=29/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/39
RA	5426	.	1	857555	0	G	A	consensus_score=218.6	frequency=1	major_base=A	major_cov=36/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/44
RA	5427	.	1	857576	0	T	C	consensus_score=220.4	frequency=1	major_base=C	major_cov=33/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/43
RA	5428	.	1	857585	0	T	C	consensus_score=204.3	frequency=1	major_base=C	major_cov=30/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/44
RA	5429	.	1	857591	0	G	A	consensus_score=211.2	frequency=1	major_base=A	major_cov=30/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/46
RA	5430	.	1	857643	0	A	G	consensus_score=194.4	frequency=1	major_base=G	major_cov=27/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/41
RA	5431	.	1	857663	0	G	A	consensus_score=183.1	frequency=1	major_base=A	major_cov=26/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/42
RA	5432	.	1	857681	0	C	T	consensus_score=163.1	frequency=1	major_base=T	major_cov=24/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/36
RA	5433	.	1	857686	0	T	C	consensus_score=162.0	frequency=1	major_base=C	major_cov=22/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/35
RA	5434	.	1	857696	0	G	A	consensus_score=128.3	frequency=1	major_base=A	major_cov=23/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/26
RA	5435	.	1	857699	0	A	T	consensus_score=130.3	frequency=1	major_base=T	major_cov=23/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/26
RA	5436	.	1	857852	0	T	C	consensus_score=159.1	frequency=1	major_base=C	major_cov=32/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/26
RA	5437	.	1	857859	0	T	C	consensus_score=152.6	frequency=1	major_base=C	major_cov=31/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/24
RA	5438	.	1	857861	0	G	C	consensus_score=149.3	frequency=1	major_base=C	major_cov=31/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/24
RA	5439	.	1	857862	0	G	T	consensus_score=154.3	frequency=1	major_base=T	major_cov=31/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/24
RA	5440	.	1	857898	0	G	A	consensus_score=138.2	frequency=1	major_base=A	major_cov=30/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/22
RA	5441	.	1	857933	0	A	G	consensus_score=165.4	frequency=1	major_base=G	major_cov=31/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/27
RA	5442	.	1	857944	0	T	C	consensus_score=146.0	frequency=1	major_base=C	major_cov=28/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/26
RA	5443	.	1	857945	0	A	G	consensus_score=148.3	frequency=1	major_base=G	major_cov=28/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/26
RA	5444	.	1	857977	0	T	C	consensus_score=146.4	frequency=1	major_base=C	major_cov=25/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/26
RA	5445	.	1	858014	0	T	G	consensus_score=130.6	frequency=1	major_base=G	major_cov=17/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/29
RA	5446	.	1	858026	0	C	T	consensus_score=115.1	frequency=1	major_base=T	major_cov=17/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/27
RA	5447	.	1	858056	0	A	G	consensus_score=107.1	frequency=1	major_base=G	major_cov=17/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/21
RA	5448	.	1	858059	0	G	A	consensus_score=99.9	frequency=1	major_base=A	major_cov=17/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/21
RA	5449	.	1	858065	0	A	G	consensus_score=100.1	frequency=1	major_base=G	major_cov=16/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/20
RA	5450	.	1	858092	0	G	A	consensus_score=83.7	frequency=1	major_base=A	major_cov=14/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/19
RA	5451	.	1	858115	0	C	T	consensus_score=132.7	frequency=1	major_base=T	major_cov=22/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/28
RA	5452	.	1	858175	0	T	C	consensus_score=156.1	frequency=1	major_base=C	major_cov=25/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/29
RA	5453	.	1	858186	0	C	T	consensus_score=137.8	frequency=1	major_base=T	major_cov=24/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/29
RA	5454	.	1	858201	0	G	T	consensus_score=144.1	frequency=1	major_base=T	major_cov=25/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/30
RA	5455	.	1	858204	0	A	G	consensus_score=148.1	frequency=1	major_base=G	major_cov=25/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/30
RA	5456	.	1	858209	0	G	A	consensus_score=154.6	frequency=1	major_base=A	major_cov=25/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/30
RA	5457	.	1	858210	0	G	A	consensus_score=154.3	frequency=1	major_base=A	major_cov=25/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/30
RA	5458	.	1	858213	0	G	A	consensus_score=154.6	frequency=1	major_base=A	major_cov=25/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/30
RA	5459	.	1	858242	0	G	A	consensus_score=155.0	frequency=1	major_base=A	major_cov=27/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/28
RA	5460	.	1	858277	0	T	C	consensus_score=157.0	frequency=1	major_base=C	major_cov=31/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/24
RA	5461	.	1	858301	0	T	C	consensus_score=185.4	frequency=1	major_base=C	major_cov=34/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/31
RA	5462	.	1	858378	0	T	C	consensus_score=212.8	frequency=1	major_base=C	major_cov=50/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/24
RA	5463	.	1	858421	0	C	T	consensus_score=271.8	frequency=1	major_base=T	major_cov=60/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/39
RA	5464	.	1	858461	0	C	T	consensus_score=288.5	frequency=1	major_base=T	major_cov=64/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/39
RA	5465	.	1	858577	0	C	T	consensus_score=230.9	frequency=1	major_base=T	major_cov=43/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/43
RA	5466	.	1	858589	0	T	C	consensus_score=240.2	frequency=1	major_base=C	major_cov=40/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/43
RA	5467	.	1	858627	0	T	C	bias_e_value=869678	bias_p_value=0.412337	consensus_score=230.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.138519	major_base=C	major_cov=41/44	major_frequency=9.884e-01	minor_base=T	minor_cov=0/1	new_cov=41/44	polymorphism_frequency=9.884e-01	polymorphism_score=-5.5	prediction=consensus	ref_cov=0/1	total_cov=41/45
RA	5468	.	1	858631	0	A	C	bias_e_value=1588740	bias_p_value=0.753265	consensus_score=236.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.385816	major_base=C	major_cov=41/44	major_frequency=9.884e-01	minor_base=.	minor_cov=0/1	new_cov=41/44	polymorphism_frequency=9.884e-01	polymorphism_score=-3.3	prediction=consensus	ref_cov=0/0	total_cov=41/45
RA	5469	.	1	858649	0	T	A	consensus_score=182.0	frequency=1	major_base=A	major_cov=30/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/38
RA	5470	.	1	858652	0	A	T	consensus_score=184.1	frequency=1	major_base=T	major_cov=30/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/38
RA	5471	.	1	858655	0	A	G	consensus_score=196.2	frequency=1	major_base=G	major_cov=30/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/38
RA	5472	.	1	858666	0	T	A	consensus_score=197.5	frequency=1	major_base=A	major_cov=35/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/38
RA	5473	.	1	858709	0	A	G	consensus_score=232.7	frequency=1	major_base=G	major_cov=36/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/45
RA	5474	.	1	858712	0	C	A	consensus_score=217.9	frequency=1	major_base=A	major_cov=36/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/45
RA	5475	.	1	858724	0	T	C	consensus_score=224.3	frequency=1	major_base=C	major_cov=35/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/45
RA	5476	.	1	858745	0	G	T	consensus_score=184.5	frequency=1	major_base=T	major_cov=29/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/40
RA	5477	.	1	858757	0	T	C	consensus_score=187.2	frequency=1	major_base=C	major_cov=35/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/34
RA	5478	.	1	858767	0	C	T	consensus_score=184.5	frequency=1	major_base=T	major_cov=35/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/34
RA	5479	.	1	858772	0	C	T	consensus_score=183.8	frequency=1	major_base=T	major_cov=35/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/31
RA	5480	.	1	858775	0	C	T	consensus_score=178.7	frequency=1	major_base=T	major_cov=35/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/31
RA	5481	.	1	858793	0	T	A	consensus_score=179.2	frequency=1	major_base=A	major_cov=38/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/31
RA	5482	.	1	858796	0	C	T	consensus_score=184.9	frequency=1	major_base=T	major_cov=38/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/31
RA	5483	.	1	858823	0	G	T	consensus_score=205.7	frequency=1	major_base=T	major_cov=41/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/35
RA	5484	.	1	858856	0	T	C	consensus_score=232.9	frequency=1	major_base=C	major_cov=43/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/38
RA	5485	.	1	858880	0	A	G	consensus_score=241.4	frequency=1	major_base=G	major_cov=49/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/35
RA	5486	.	1	858892	0	G	C	consensus_score=228.6	frequency=1	major_base=C	major_cov=48/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/35
RA	5487	.	1	858907	0	C	T	consensus_score=244.0	frequency=1	major_base=T	major_cov=51/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/35
RA	5488	.	1	858910	0	A	G	consensus_score=235.4	frequency=1	major_base=G	major_cov=51/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/35
RA	5489	.	1	858997	0	G	A	bias_e_value=2077220	bias_p_value=0.984866	consensus_score=231.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.831144	major_base=A	major_cov=44/41	major_frequency=9.884e-01	minor_base=T	minor_cov=1/0	new_cov=44/41	polymorphism_frequency=9.884e-01	polymorphism_score=-3.9	prediction=consensus	ref_cov=0/0	total_cov=45/41
RA	5490	.	1	859009	0	G	A	consensus_score=256.9	frequency=1	major_base=A	major_cov=50/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/44
RA	5491	.	1	859015	0	T	C	bias_e_value=2108520	bias_p_value=0.999707	consensus_score=249.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.975876	major_base=C	major_cov=45/45	major_frequency=9.890e-01	minor_base=A	minor_cov=1/0	new_cov=45/45	polymorphism_frequency=9.890e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=0/0	total_cov=46/45
RA	5492	.	1	859030	0	T	C	consensus_score=248.6	frequency=1	major_base=C	major_cov=42/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/44
RA	5493	.	1	859075	0	A	G	consensus_score=212.4	frequency=1	major_base=G	major_cov=40/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/37
RA	5494	.	1	859078	0	G	T	consensus_score=204.5	frequency=1	major_base=T	major_cov=40/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/37
RA	5495	.	1	859099	0	G	A	consensus_score=183.2	frequency=1	major_base=A	major_cov=32/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/35
RA	5496	.	1	859114	0	A	G	consensus_score=164.0	frequency=1	major_base=G	major_cov=25/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/32
RA	5497	.	1	859129	0	T	C	consensus_score=138.3	frequency=1	major_base=C	major_cov=22/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/29
RA	5498	.	1	859132	0	T	C	consensus_score=143.0	frequency=1	major_base=C	major_cov=22/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/29
RA	5499	.	1	859137	0	A	C	consensus_score=135.0	frequency=1	major_base=C	major_cov=20/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/27
RA	5500	.	1	859138	0	G	A	consensus_score=124.3	frequency=1	major_base=A	major_cov=20/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/27
RA	5501	.	1	859144	0	T	C	consensus_score=134.9	frequency=1	major_base=C	major_cov=20/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/27
RA	5502	.	1	859150	0	T	C	consensus_score=134.2	frequency=1	major_base=C	major_cov=20/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/27
RA	5503	.	1	859170	0	T	G	consensus_score=120.1	frequency=1	major_base=G	major_cov=19/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/26
RA	5504	.	1	859174	0	A	G	consensus_score=117.0	frequency=1	major_base=G	major_cov=17/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/26
RA	5505	.	1	859175	0	C	T	consensus_score=114.6	frequency=1	major_base=T	major_cov=17/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/26
RA	5506	.	1	859201	0	G	A	consensus_score=116.9	frequency=1	major_base=A	major_cov=19/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/25
RA	5507	.	1	859207	0	C	T	consensus_score=116.4	frequency=1	major_base=T	major_cov=20/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/24
RA	5508	.	1	859225	0	A	T	consensus_score=99.3	frequency=1	major_base=T	major_cov=19/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/19
RA	5509	.	1	859231	0	G	A	consensus_score=107.4	frequency=1	major_base=A	major_cov=19/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/20
RA	5510	.	1	859237	0	T	A	consensus_score=99.7	frequency=1	major_base=A	major_cov=17/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/20
RA	5511	.	1	859240	0	C	T	consensus_score=97.7	frequency=1	major_base=T	major_cov=17/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/20
RA	5512	.	1	859252	0	A	G	consensus_score=115.7	frequency=1	major_base=G	major_cov=21/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/20
RA	5513	.	1	859258	0	G	A	consensus_score=116.4	frequency=1	major_base=A	major_cov=24/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/19
RA	5514	.	1	859267	0	T	C	consensus_score=119.6	frequency=1	major_base=C	major_cov=26/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/17
RA	5515	.	1	859270	0	T	C	consensus_score=120.3	frequency=1	major_base=C	major_cov=26/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/17
RA	5516	.	1	859291	0	G	A	consensus_score=128.2	frequency=1	major_base=A	major_cov=28/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/21
RA	5517	.	1	859295	0	C	T	consensus_score=129.9	frequency=1	major_base=T	major_cov=28/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/21
RA	5518	.	1	859300	0	T	C	consensus_score=138.0	frequency=1	major_base=C	major_cov=28/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/21
RA	5519	.	1	859303	0	A	C	consensus_score=137.7	frequency=1	major_base=C	major_cov=28/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/21
RA	5520	.	1	859318	0	G	A	consensus_score=154.3	frequency=1	major_base=A	major_cov=34/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/24
RA	5521	.	1	859327	0	A	G	consensus_score=172.1	frequency=1	major_base=G	major_cov=36/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/24
RA	5522	.	1	859333	0	C	G	consensus_score=174.6	frequency=1	major_base=G	major_cov=36/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/25
RA	5523	.	1	859354	0	A	G	consensus_score=184.3	frequency=1	major_base=G	major_cov=39/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/29
RA	5524	.	1	859360	0	G	A	consensus_score=178.5	frequency=1	major_base=A	major_cov=39/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/29
RA	5525	.	1	859363	0	T	C	consensus_score=186.9	frequency=1	major_base=C	major_cov=39/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/29
RA	5526	.	1	859366	0	T	C	consensus_score=192.6	frequency=1	major_base=C	major_cov=39/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/29
RA	5527	.	1	859369	0	G	A	consensus_score=184.2	frequency=1	major_base=A	major_cov=39/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/29
RA	5528	.	1	859372	0	A	C	consensus_score=188.2	frequency=1	major_base=C	major_cov=39/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/29
RA	5529	.	1	859579	0	C	T	bias_e_value=2109140	bias_p_value=1	consensus_score=312.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999345	major_base=T	major_cov=55/55	major_frequency=9.910e-01	minor_base=C	minor_cov=1/0	new_cov=55/55	polymorphism_frequency=9.910e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=56/55
RA	5530	.	1	859600	0	T	C	consensus_score=307.3	frequency=1	major_base=C	major_cov=55/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/50
RA	5531	.	1	859704	0	G	A	consensus_score=210.5	frequency=1	major_base=A	major_cov=36/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/39
RA	5532	.	1	859715	0	A	G	consensus_score=188.9	frequency=1	major_base=G	major_cov=30/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/36
RA	5533	.	1	859724	0	T	C	consensus_score=191.9	frequency=1	major_base=C	major_cov=28/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/39
RA	5534	.	1	859754	0	T	A	consensus_score=176.1	frequency=1	major_base=A	major_cov=27/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/39
RA	5535	.	1	859777	0	G	A	consensus_score=138.7	frequency=1	major_base=A	major_cov=19/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/33
RA	5536	.	1	859790	0	A	G	consensus_score=102.1	frequency=1	major_base=G	major_cov=14/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/24
RA	5537	.	1	859797	0	T	A	consensus_score=84.4	frequency=1	major_base=A	major_cov=11/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/21
RA	5538	.	1	859801	0	G	C	consensus_score=65.4	frequency=1	major_base=C	major_cov=8/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/16
RA	5539	.	1	859803	0	T	C	consensus_score=66.3	frequency=1	major_base=C	major_cov=8/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/16
RA	5540	.	1	859805	0	G	A	consensus_score=59.5	frequency=1	major_base=A	major_cov=8/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/16
RA	5541	.	1	859811	0	A	.	consensus_score=97.2	frequency=1	major_base=.	major_cov=8/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/16
RA	5542	.	1	859813	0	T	G	consensus_score=65.1	frequency=1	major_base=G	major_cov=8/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/16
RA	5543	.	1	859816	0	C	A	consensus_score=59.9	frequency=1	major_base=A	major_cov=8/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/16
RA	5544	.	1	859817	1	.	A	consensus_score=62.6	frequency=1	major_base=A	major_cov=8/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/16
RA	5545	.	1	859818	0	T	C	bias_e_value=1830460	bias_p_value=0.867868	consensus_score=53.9	fisher_strand_p_value=0.536232	frequency=1	ks_quality_p_value=0.992453	major_base=C	major_cov=8/14	major_frequency=9.167e-01	minor_base=T	minor_cov=0/2	new_cov=8/14	polymorphism_frequency=9.167e-01	polymorphism_score=-4.6	prediction=consensus	ref_cov=0/2	total_cov=8/16
RA	5546	.	1	859821	0	G	A	consensus_score=62.3	frequency=1	major_base=A	major_cov=8/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/16
RA	5547	.	1	859822	0	C	A	consensus_score=61.5	frequency=1	major_base=A	major_cov=8/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/16
RA	5548	.	1	859823	0	T	C	consensus_score=61.5	frequency=1	major_base=C	major_cov=8/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/16
RA	5549	.	1	859826	0	C	T	consensus_score=59.7	frequency=1	major_base=T	major_cov=8/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/16
RA	5550	.	1	859829	0	T	C	consensus_score=66.4	frequency=1	major_base=C	major_cov=8/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/16
RA	5551	.	1	859834	0	C	T	consensus_score=59.3	frequency=1	major_base=T	major_cov=8/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/16
RA	5552	.	1	859839	0	G	.	consensus_score=98.3	frequency=1	major_base=.	major_cov=8/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/16
RA	5553	.	1	859841	0	A	T	consensus_score=58.7	frequency=1	major_base=T	major_cov=8/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/16
RA	5554	.	1	859843	0	C	.	consensus_score=98.6	frequency=1	major_base=.	major_cov=8/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/16
RA	5555	.	1	859844	0	A	.	consensus_score=98.6	frequency=1	major_base=.	major_cov=8/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/16
RA	5556	.	1	859855	0	T	C	consensus_score=76.6	frequency=1	major_base=C	major_cov=9/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/19
RA	5557	.	1	859857	0	G	A	consensus_score=72.2	frequency=1	major_base=A	major_cov=9/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/19
RA	5558	.	1	859858	0	A	C	consensus_score=78.2	frequency=1	major_base=C	major_cov=9/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/19
RA	5559	.	1	859864	0	T	C	consensus_score=77.2	frequency=1	major_base=C	major_cov=9/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/19
RA	5560	.	1	859868	0	G	A	consensus_score=74.5	frequency=1	major_base=A	major_cov=9/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/19
RA	5561	.	1	859871	0	T	C	consensus_score=72.5	frequency=1	major_base=C	major_cov=9/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/19
RA	5562	.	1	859873	0	T	G	consensus_score=76.0	frequency=1	major_base=G	major_cov=9/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/19
RA	5563	.	1	859882	0	A	G	consensus_score=96.9	frequency=1	major_base=G	major_cov=10/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/25
RA	5564	.	1	859888	0	A	C	consensus_score=90.9	frequency=1	major_base=C	major_cov=10/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/25
RA	5565	.	1	859890	0	A	G	consensus_score=97.2	frequency=1	major_base=G	major_cov=10/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/25
RA	5566	.	1	859892	0	T	C	consensus_score=96.6	frequency=1	major_base=C	major_cov=10/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/25
RA	5567	.	1	859903	0	T	C	consensus_score=119.7	frequency=1	major_base=C	major_cov=13/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/29
RA	5568	.	1	859931	0	G	A	consensus_score=138.5	frequency=1	major_base=A	major_cov=19/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/31
RA	5569	.	1	859937	0	C	G	consensus_score=137.2	frequency=1	major_base=G	major_cov=20/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/30
RA	5570	.	1	859949	0	A	G	consensus_score=131.5	frequency=1	major_base=G	major_cov=19/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/30
RA	5571	.	1	859950	0	A	G	consensus_score=134.4	frequency=1	major_base=G	major_cov=19/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/30
RA	5572	.	1	859955	0	T	C	consensus_score=138.4	frequency=1	major_base=C	major_cov=19/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/30
RA	5573	.	1	859964	0	G	A	consensus_score=98.2	frequency=1	major_base=A	major_cov=17/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/21
RA	5574	.	1	859966	0	T	C	consensus_score=108.5	frequency=1	major_base=C	major_cov=17/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/21
RA	5575	.	1	859969	0	C	A	consensus_score=100.8	frequency=1	major_base=A	major_cov=17/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/21
RA	5576	.	1	859970	0	A	T	consensus_score=100.3	frequency=1	major_base=T	major_cov=17/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/21
RA	5577	.	1	859982	0	A	G	consensus_score=148.5	frequency=1	major_base=G	major_cov=24/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/30
RA	5578	.	1	860012	0	A	G	consensus_score=191.1	frequency=1	major_base=G	major_cov=31/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/36
RA	5579	.	1	860019	0	T	C	consensus_score=197.2	frequency=1	major_base=C	major_cov=32/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/36
RA	5580	.	1	860039	0	A	G	consensus_score=218.4	frequency=1	major_base=G	major_cov=38/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/42
RA	5581	.	1	860049	0	T	C	consensus_score=233.1	frequency=1	major_base=C	major_cov=38/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/42
RA	5582	.	1	860051	0	C	T	consensus_score=212.5	frequency=1	major_base=T	major_cov=38/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/42
RA	5583	.	1	860056	0	C	T	consensus_score=211.3	frequency=1	major_base=T	major_cov=38/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/42
RA	5584	.	1	860057	0	T	C	consensus_score=234.1	frequency=1	major_base=C	major_cov=38/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/42
RA	5585	.	1	860059	0	G	A	consensus_score=214.6	frequency=1	major_base=A	major_cov=38/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/42
RA	5586	.	1	860066	0	T	A	consensus_score=221.1	frequency=1	major_base=A	major_cov=38/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/45
RA	5587	.	1	860084	0	G	A	consensus_score=234.7	frequency=1	major_base=A	major_cov=40/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/45
RA	5588	.	1	860207	0	T	C	consensus_score=207.4	frequency=1	major_base=C	major_cov=28/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/45
RA	5589	.	1	860246	0	A	G	consensus_score=171.9	frequency=1	major_base=G	major_cov=20/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/40
RA	5590	.	1	860279	0	T	C	consensus_score=166.1	frequency=1	major_base=C	major_cov=25/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/36
RA	5591	.	1	860294	0	C	T	consensus_score=161.8	frequency=1	major_base=T	major_cov=24/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/34
RA	5592	.	1	860321	0	T	C	consensus_score=158.3	frequency=1	major_base=C	major_cov=23/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/36
RA	5593	.	1	860332	0	C	T	consensus_score=168.9	frequency=1	major_base=T	major_cov=23/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/37
RA	5594	.	1	860343	0	T	G	consensus_score=165.2	frequency=1	major_base=G	major_cov=21/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/39
RA	5595	.	1	860344	0	G	A	consensus_score=166.0	frequency=1	major_base=A	major_cov=21/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/39
RA	5596	.	1	860389	0	T	C	consensus_score=152.8	frequency=1	major_base=C	major_cov=23/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/31
RA	5597	.	1	860500	0	C	T	consensus_score=136.9	frequency=1	major_base=T	major_cov=24/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/26
RA	5598	.	1	860596	0	C	T	consensus_score=211.0	frequency=1	major_base=T	major_cov=45/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/34
RA	5599	.	1	860672	0	G	C	consensus_score=248.5	frequency=1	major_base=C	major_cov=44/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/42
RA	5600	.	1	860689	0	G	A	consensus_score=230.2	frequency=1	major_base=A	major_cov=44/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/42
RA	5601	.	1	860737	0	A	G	consensus_score=266.4	frequency=1	major_base=G	major_cov=45/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/47
RA	5602	.	1	860753	0	T	C	consensus_score=252.5	frequency=1	major_base=C	major_cov=46/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/47
RA	5603	.	1	860794	0	T	C	consensus_score=281.9	frequency=1	major_base=C	major_cov=46/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/52
RA	5604	.	1	860846	0	G	A	consensus_score=254.8	frequency=1	major_base=A	major_cov=40/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/54
RA	5605	.	1	860848	0	C	T	consensus_score=268.7	frequency=1	major_base=T	major_cov=40/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/54
RA	5606	.	1	860863	0	T	G	consensus_score=257.5	frequency=1	major_base=G	major_cov=38/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/53
RA	5607	.	1	860868	0	G	A	consensus_score=256.1	frequency=1	major_base=A	major_cov=33/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/55
RA	5608	.	1	860884	0	C	T	consensus_score=247.1	frequency=1	major_base=T	major_cov=35/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/57
RA	5609	.	1	860895	0	G	A	consensus_score=232.4	frequency=1	major_base=A	major_cov=34/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/51
RA	5610	.	1	860896	0	T	C	consensus_score=245.0	frequency=1	major_base=C	major_cov=34/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/51
RA	5611	.	1	860903	0	T	C	consensus_score=227.6	frequency=1	major_base=C	major_cov=33/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/50
RA	5612	.	1	860904	0	A	G	bias_e_value=2109140	bias_p_value=0.999997	consensus_score=222.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.997359	major_base=G	major_cov=33/49	major_frequency=9.880e-01	minor_base=A	minor_cov=0/1	new_cov=33/49	polymorphism_frequency=9.880e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=33/50
RA	5613	.	1	860908	0	T	G	consensus_score=227.6	frequency=1	major_base=G	major_cov=33/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/50
RA	5614	.	1	860917	0	C	T	consensus_score=220.2	frequency=1	major_base=T	major_cov=32/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/49
RA	5615	.	1	860926	0	T	C	consensus_score=229.0	frequency=1	major_base=C	major_cov=34/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/49
RA	5616	.	1	860927	0	A	G	consensus_score=232.2	frequency=1	major_base=G	major_cov=34/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/49
RA	5617	.	1	860944	0	T	.	consensus_score=347.7	frequency=1	major_base=.	major_cov=31/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/51
RA	5618	.	1	860990	0	A	T	consensus_score=201.6	frequency=1	major_base=T	major_cov=26/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/49
RA	5619	.	1	861026	0	A	C	consensus_score=163.6	frequency=1	major_base=C	major_cov=20/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/40
RA	5620	.	1	861027	0	C	T	consensus_score=158.3	frequency=1	major_base=T	major_cov=20/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/40
RA	5621	.	1	861049	0	T	C	consensus_score=115.3	frequency=1	major_base=C	major_cov=17/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/26
RA	5622	.	1	861095	0	G	A	consensus_score=89.8	frequency=1	major_base=A	major_cov=15/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/19
RA	5623	.	1	861139	0	T	C	consensus_score=40.5	deleted=1	frequency=1	major_base=C	major_cov=8/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/8
RA	5624	.	1	861142	0	C	T	consensus_score=38.0	deleted=1	frequency=1	major_base=T	major_cov=8/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/8
RA	5625	.	1	861148	0	A	G	consensus_score=36.6	deleted=1	frequency=1	major_base=G	major_cov=7/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/8
RA	5626	.	1	861163	0	C	T	consensus_score=22.3	deleted=1	frequency=1	major_base=T	major_cov=5/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/5
RA	5627	.	1	861342	0	C	T	consensus_score=12.7	deleted=1	frequency=1	major_base=T	major_cov=3/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/4
RA	5628	.	1	861355	0	A	T	consensus_score=47.4	deleted=1	frequency=1	major_base=T	major_cov=9/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/10
RA	5629	.	1	861382	0	G	A	consensus_score=63.6	frequency=1	major_base=A	major_cov=11/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/14
RA	5630	.	1	861394	0	G	A	consensus_score=68.9	frequency=1	major_base=A	major_cov=12/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/15
RA	5631	.	1	861426	0	T	C	consensus_score=83.9	frequency=1	major_base=C	major_cov=12/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/18
RA	5632	.	1	861428	0	T	C	consensus_score=84.0	frequency=1	major_base=C	major_cov=12/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/18
RA	5633	.	1	861448	0	G	A	consensus_score=77.4	frequency=1	major_base=A	major_cov=12/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/18
RA	5634	.	1	861450	0	T	C	consensus_score=84.4	frequency=1	major_base=C	major_cov=12/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/18
RA	5635	.	1	861469	0	C	A	consensus_score=73.9	frequency=1	major_base=A	major_cov=11/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/18
RA	5636	.	1	861473	0	A	G	consensus_score=80.4	frequency=1	major_base=G	major_cov=11/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/18
RA	5637	.	1	861478	0	G	A	consensus_score=74.7	frequency=1	major_base=A	major_cov=11/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/18
RA	5638	.	1	861553	0	A	G	consensus_score=78.5	frequency=1	major_base=G	major_cov=11/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/18
RA	5639	.	1	861571	0	T	G	consensus_score=77.2	frequency=1	major_base=G	major_cov=13/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/15
RA	5640	.	1	861593	0	G	C	consensus_score=52.7	frequency=1	major_base=C	major_cov=9/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/12
RA	5641	.	1	861594	0	T	C	consensus_score=52.6	frequency=1	major_base=C	major_cov=9/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/12
RA	5642	.	1	861597	0	C	T	consensus_score=52.7	frequency=1	major_base=T	major_cov=9/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/12
RA	5643	.	1	861625	1	.	T	consensus_score=43.8	frequency=1	major_base=T	major_cov=7/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/10
RA	5644	.	1	861650	0	C	T	consensus_score=36.9	frequency=1	major_base=T	major_cov=6/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/10
RA	5645	.	1	861660	0	T	C	consensus_score=41.1	frequency=1	major_base=C	major_cov=7/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/9
RA	5646	.	1	861678	1	.	C	consensus_score=42.0	frequency=1	major_base=C	major_cov=8/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/9
RA	5647	.	1	861732	0	C	T	consensus_score=32.6	frequency=1	major_base=T	major_cov=8/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/6
RA	5648	.	1	861776	0	A	.	consensus_score=32.3	frequency=1	major_base=.	major_cov=5/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/4
RA	5649	.	1	861782	0	T	C	consensus_score=22.8	frequency=1	major_base=C	major_cov=5/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/5
RA	5650	.	1	861809	0	G	A	consensus_score=36.5	frequency=1	major_base=A	major_cov=8/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/7
RA	5651	.	1	861823	1	.	T	consensus_score=32.0	frequency=1	major_base=T	major_cov=6/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/7
RA	5652	.	1	861830	0	C	T	consensus_score=29.3	frequency=1	major_base=T	major_cov=6/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/7
RA	5653	.	1	861843	0	T	C	consensus_score=29.7	frequency=1	major_base=C	major_cov=6/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/6
RA	5654	.	1	861887	0	G	T	consensus_score=39.5	frequency=1	major_base=T	major_cov=9/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/7
RA	5655	.	1	861894	1	.	A	consensus_score=35.2	frequency=1	major_base=A	major_cov=8/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/7
RA	5656	.	1	861905	0	T	.	consensus_score=63.0	frequency=1	major_base=.	major_cov=8/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/8
RA	5657	.	1	861930	0	G	A	consensus_score=64.1	frequency=1	major_base=A	major_cov=15/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/11
RA	5658	.	1	861970	0	T	C	bias_e_value=2109140	bias_p_value=1	consensus_score=84.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=16/16	major_frequency=9.697e-01	minor_base=T	minor_cov=0/1	new_cov=16/16	polymorphism_frequency=9.697e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=16/17
RA	5659	.	1	861980	0	T	C	consensus_score=88.1	frequency=1	major_base=C	major_cov=16/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/17
RA	5660	.	1	861995	0	G	A	consensus_score=84.3	frequency=1	major_base=A	major_cov=16/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/17
RA	5661	.	1	862008	0	A	G	consensus_score=81.4	frequency=1	major_base=G	major_cov=16/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/14
RA	5662	.	1	862016	0	A	G	consensus_score=83.3	frequency=1	major_base=G	major_cov=16/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/14
RA	5663	.	1	862019	0	G	A	consensus_score=77.2	frequency=1	major_base=A	major_cov=16/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/14
RA	5664	.	1	862036	0	T	C	consensus_score=66.6	frequency=1	major_base=C	major_cov=15/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/11
RA	5665	.	1	862040	0	A	T	consensus_score=67.5	frequency=1	major_base=T	major_cov=15/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/11
RA	5666	.	1	862046	0	G	A	consensus_score=63.0	frequency=1	major_base=A	major_cov=15/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/11
RA	5667	.	1	862061	0	T	C	consensus_score=69.1	frequency=1	major_base=C	major_cov=16/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/10
RA	5668	.	1	862071	0	A	G	consensus_score=70.0	frequency=1	major_base=G	major_cov=17/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/10
RA	5669	.	1	862088	0	T	.	consensus_score=115.2	frequency=1	major_base=.	major_cov=19/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/9
RA	5670	.	1	862112	0	A	G	consensus_score=75.4	frequency=1	major_base=G	major_cov=19/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/9
RA	5671	.	1	862113	0	G	A	consensus_score=73.0	frequency=1	major_base=A	major_cov=19/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/9
RA	5672	.	1	862115	0	T	C	consensus_score=75.5	frequency=1	major_base=C	major_cov=19/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/9
RA	5673	.	1	862124	0	A	G	consensus_score=78.6	frequency=1	major_base=G	major_cov=20/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/9
RA	5674	.	1	862129	0	T	C	consensus_score=71.3	frequency=1	major_base=C	major_cov=18/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/9
RA	5675	.	1	862130	0	C	T	consensus_score=73.3	frequency=1	major_base=T	major_cov=18/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/9
RA	5676	.	1	862135	0	T	G	consensus_score=74.9	frequency=1	major_base=G	major_cov=19/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/9
RA	5677	.	1	862140	0	T	C	consensus_score=76.0	frequency=1	major_base=C	major_cov=19/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/9
RA	5678	.	1	862147	0	T	C	consensus_score=86.7	frequency=1	major_base=C	major_cov=20/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/12
RA	5679	.	1	862154	0	T	C	consensus_score=87.7	frequency=1	major_base=C	major_cov=22/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/11
RA	5680	.	1	862158	0	A	G	bias_e_value=2109140	bias_p_value=1	consensus_score=84.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=21/11	major_frequency=9.697e-01	minor_base=T	minor_cov=1/0	new_cov=21/11	polymorphism_frequency=9.697e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/11
RA	5681	.	1	862175	0	G	A	consensus_score=83.5	frequency=1	major_base=A	major_cov=22/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/10
RA	5682	.	1	862180	0	C	T	consensus_score=78.4	frequency=1	major_base=T	major_cov=21/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/9
RA	5683	.	1	862186	0	T	G	consensus_score=82.4	frequency=1	major_base=G	major_cov=21/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/9
RA	5684	.	1	862189	0	A	C	consensus_score=80.1	frequency=1	major_base=C	major_cov=21/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/9
RA	5685	.	1	862190	0	C	G	consensus_score=77.1	frequency=1	major_base=G	major_cov=21/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/9
RA	5686	.	1	862200	0	A	G	consensus_score=129.7	frequency=1	major_base=G	major_cov=32/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/14
RA	5687	.	1	862207	0	C	T	consensus_score=128.6	frequency=1	major_base=T	major_cov=32/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/15
RA	5688	.	1	862217	0	G	A	consensus_score=122.5	frequency=1	major_base=A	major_cov=32/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/15
RA	5689	.	1	862227	0	G	T	consensus_score=150.9	frequency=1	major_base=T	major_cov=36/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/20
RA	5690	.	1	862245	0	G	A	consensus_score=162.8	frequency=1	major_base=A	major_cov=41/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/20
RA	5691	.	1	862270	0	T	A	consensus_score=194.2	frequency=1	major_base=A	major_cov=43/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/24
RA	5692	.	1	862299	0	A	G	consensus_score=184.0	frequency=1	major_base=G	major_cov=41/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/26
RA	5693	.	1	862301	0	C	A	consensus_score=190.7	frequency=1	major_base=A	major_cov=41/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/26
RA	5694	.	1	862311	0	A	G	consensus_score=194.9	frequency=1	major_base=G	major_cov=41/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/27
RA	5695	.	1	862344	0	C	T	consensus_score=147.8	frequency=1	major_base=T	major_cov=37/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/20
RA	5696	.	1	862346	0	G	A	consensus_score=154.2	frequency=1	major_base=A	major_cov=37/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/20
RA	5697	.	1	862347	0	G	T	consensus_score=154.1	frequency=1	major_base=T	major_cov=37/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/20
RA	5698	.	1	862353	0	T	G	consensus_score=168.2	frequency=1	major_base=G	major_cov=39/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/20
RA	5699	.	1	862356	0	G	A	consensus_score=160.4	frequency=1	major_base=A	major_cov=39/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/20
RA	5700	.	1	862365	0	A	G	consensus_score=201.9	frequency=1	major_base=G	major_cov=44/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/27
RA	5701	.	1	862377	0	T	C	consensus_score=213.9	frequency=1	major_base=C	major_cov=46/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/29
RA	5702	.	1	862382	0	C	T	consensus_score=204.4	frequency=1	major_base=T	major_cov=45/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/29
RA	5703	.	1	862404	0	T	C	consensus_score=222.9	frequency=1	major_base=C	major_cov=45/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/32
RA	5704	.	1	862473	0	G	A	consensus_score=193.8	frequency=1	major_base=A	major_cov=37/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/35
RA	5705	.	1	862478	0	T	C	consensus_score=199.6	frequency=1	major_base=C	major_cov=37/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/35
RA	5706	.	1	862480	0	C	T	consensus_score=194.1	frequency=1	major_base=T	major_cov=37/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/35
RA	5707	.	1	862503	0	C	T	consensus_score=193.1	frequency=1	major_base=T	major_cov=32/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/37
RA	5708	.	1	862524	0	A	G	consensus_score=186.2	frequency=1	major_base=G	major_cov=35/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/33
RA	5709	.	1	862527	0	C	T	consensus_score=182.5	frequency=1	major_base=T	major_cov=35/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/33
RA	5710	.	1	862596	0	T	C	consensus_score=213.4	frequency=1	major_base=C	major_cov=40/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/37
RA	5711	.	1	862642	0	C	T	consensus_score=231.6	frequency=1	major_base=T	major_cov=47/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/38
RA	5712	.	1	862708	0	T	G	consensus_score=193.8	frequency=1	major_base=G	major_cov=39/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/33
RA	5713	.	1	862715	0	T	A	consensus_score=193.0	frequency=1	major_base=A	major_cov=37/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/32
RA	5714	.	1	862717	0	C	T	consensus_score=185.8	frequency=1	major_base=T	major_cov=37/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/32
RA	5715	.	1	862719	1	.	A	consensus_score=174.3	frequency=1	major_base=A	major_cov=36/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/30
RA	5716	.	1	862736	0	T	A	bias_e_value=1764230	bias_p_value=0.836465	consensus_score=182.5	fisher_strand_p_value=0.485714	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=36/33	major_frequency=9.857e-01	minor_base=C	minor_cov=0/1	new_cov=36/33	polymorphism_frequency=9.857e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/34
RA	5717	.	1	862766	0	C	T	consensus_score=165.1	frequency=1	major_base=T	major_cov=33/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/30
RA	5718	.	1	862772	0	T	.	consensus_score=52.7	frequency=1	major_base=.	major_cov=3/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/12
RA	5719	.	1	862773	0	T	.	consensus_score=52.7	frequency=1	major_base=.	major_cov=3/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/12
RA	5720	.	1	862774	0	A	.	consensus_score=52.7	frequency=1	major_base=.	major_cov=3/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/12
RA	5721	.	1	862777	0	T	.	consensus_score=58.8	frequency=1	major_base=.	major_cov=3/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/12
RA	5722	.	1	862778	0	T	.	consensus_score=58.8	frequency=1	major_base=.	major_cov=3/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/12
RA	5723	.	1	862784	0	C	.	bias_e_value=2077330	bias_p_value=0.984918	consensus_score=38.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.831424	major_base=.	major_cov=3/10	major_frequency=8.667e-01	minor_base=C	minor_cov=0/2	new_cov=3/10	polymorphism_frequency=8.667e-01	polymorphism_score=1.1	prediction=consensus	ref_cov=0/2	total_cov=3/12
RA	5724	.	1	862785	0	A	.	bias_e_value=2077330	bias_p_value=0.984918	consensus_score=38.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.831424	major_base=.	major_cov=3/10	major_frequency=8.667e-01	minor_base=A	minor_cov=0/2	new_cov=3/10	polymorphism_frequency=8.667e-01	polymorphism_score=1.0	prediction=consensus	ref_cov=0/2	total_cov=3/12
RA	5725	.	1	862786	0	T	.	bias_e_value=2109140	bias_p_value=1	consensus_score=38.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=.	major_cov=3/10	major_frequency=8.667e-01	minor_base=T	minor_cov=0/2	new_cov=3/10	polymorphism_frequency=8.667e-01	polymorphism_score=1.2	prediction=consensus	ref_cov=0/2	total_cov=3/12
RA	5726	.	1	862787	0	A	.	consensus_score=53.6	frequency=1	major_base=.	major_cov=3/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/12
RA	5727	.	1	862788	0	T	.	consensus_score=53.6	frequency=1	major_base=.	major_cov=3/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/12
RA	5728	.	1	862796	0	A	G	bias_e_value=1709340	bias_p_value=0.810442	consensus_score=132.8	fisher_strand_p_value=0.491497	frequency=1	ks_quality_p_value=0.918415	major_base=G	major_cov=23/24	major_frequency=9.592e-01	minor_base=.	minor_cov=0/2	new_cov=23/24	polymorphism_frequency=9.592e-01	polymorphism_score=0.3	prediction=consensus	ref_cov=0/0	total_cov=23/26
RA	5729	.	1	862801	0	C	T	consensus_score=144.5	frequency=1	major_base=T	major_cov=27/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/26
RA	5730	.	1	862811	0	G	A	consensus_score=122.7	frequency=1	major_base=A	major_cov=24/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/24
RA	5731	.	1	862813	0	A	G	consensus_score=127.8	frequency=1	major_base=G	major_cov=24/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/24
RA	5732	.	1	862834	0	A	G	consensus_score=108.8	frequency=1	major_base=G	major_cov=18/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/23
RA	5733	.	1	862836	0	G	A	consensus_score=112.6	frequency=1	major_base=A	major_cov=18/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/23
RA	5734	.	1	862845	0	C	A	consensus_score=106.9	frequency=1	major_base=A	major_cov=19/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/22
RA	5735	.	1	862860	1	.	G	bias_e_value=1765620	bias_p_value=0.837127	consensus_score=78.2	fisher_strand_p_value=0.486631	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=16/16	major_frequency=9.412e-01	minor_base=A	minor_cov=0/2	new_cov=16/16	polymorphism_frequency=9.412e-01	polymorphism_score=-5.5	prediction=consensus	ref_cov=0/0	total_cov=16/18
RA	5736	.	1	862892	0	G	A	consensus_score=60.2	frequency=1	major_base=A	major_cov=16/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/12
RA	5737	.	1	862921	0	C	T	consensus_score=107.5	frequency=1	major_base=T	major_cov=26/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/13
RA	5738	.	1	862924	0	G	C	consensus_score=104.6	frequency=1	major_base=C	major_cov=26/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/13
RA	5739	.	1	862951	0	G	A	bias_e_value=774725	bias_p_value=0.367317	consensus_score=92.1	fisher_strand_p_value=0.116667	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=26/12	major_frequency=9.500e-01	minor_base=C	minor_cov=0/2	new_cov=26/12	polymorphism_frequency=9.500e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=26/15
RA	5740	.	1	862954	0	C	T	consensus_score=108.2	frequency=1	major_base=T	major_cov=26/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/15
RA	5741	.	1	862955	0	A	G	consensus_score=117.0	frequency=1	major_base=G	major_cov=26/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/15
RA	5742	.	1	862962	1	.	G	consensus_score=104.2	frequency=1	major_base=G	major_cov=26/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/13
RA	5743	.	1	862967	0	T	.	consensus_score=161.4	frequency=1	major_base=.	major_cov=26/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/13
RA	5744	.	1	862968	0	T	C	consensus_score=104.7	frequency=1	major_base=C	major_cov=26/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/13
RA	5745	.	1	862987	0	C	T	consensus_score=162.4	frequency=1	major_base=T	major_cov=45/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/15
RA	5746	.	1	862997	0	C	A	consensus_score=164.7	frequency=1	major_base=A	major_cov=46/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/15
RA	5747	.	1	863013	0	T	C	consensus_score=177.8	frequency=1	major_base=C	major_cov=46/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/19
RA	5748	.	1	863047	0	A	G	consensus_score=198.5	frequency=1	major_base=G	major_cov=48/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/20
RA	5749	.	1	863065	0	G	A	consensus_score=182.7	frequency=1	major_base=A	major_cov=47/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/23
RA	5750	.	1	863102	0	C	T	consensus_score=192.8	frequency=1	major_base=T	major_cov=46/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/25
RA	5751	.	1	863119	0	A	G	consensus_score=197.1	frequency=1	major_base=G	major_cov=44/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/26
RA	5752	.	1	863143	0	T	C	consensus_score=169.8	frequency=1	major_base=C	major_cov=37/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/26
RA	5753	.	1	863144	0	A	G	consensus_score=169.7	frequency=1	major_base=G	major_cov=37/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/26
RA	5754	.	1	863155	0	C	T	consensus_score=181.3	frequency=1	major_base=T	major_cov=38/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/26
RA	5755	.	1	863170	0	G	C	consensus_score=180.2	frequency=1	major_base=C	major_cov=38/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/26
RA	5756	.	1	863171	0	C	T	consensus_score=175.7	frequency=1	major_base=T	major_cov=38/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/26
RA	5757	.	1	863201	0	T	G	consensus_score=185.7	frequency=1	major_base=G	major_cov=37/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/29
RA	5758	.	1	863219	0	G	C	bias_e_value=2109140	bias_p_value=1	consensus_score=164.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=32/27	major_frequency=9.833e-01	minor_base=A	minor_cov=1/0	new_cov=32/27	polymorphism_frequency=9.833e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/27
RA	5759	.	1	863221	0	G	A	bias_e_value=2109140	bias_p_value=1	consensus_score=159.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999435	major_base=A	major_cov=32/27	major_frequency=9.833e-01	minor_base=T	minor_cov=1/0	new_cov=32/27	polymorphism_frequency=9.833e-01	polymorphism_score=-5.8	prediction=consensus	ref_cov=0/0	total_cov=33/27
RA	5760	.	1	863230	0	T	C	consensus_score=147.4	frequency=1	major_base=C	major_cov=25/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/29
RA	5761	.	1	863245	0	T	G	consensus_score=146.5	frequency=1	major_base=G	major_cov=24/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/29
RA	5762	.	1	863341	0	C	T	consensus_score=258.0	frequency=1	major_base=T	major_cov=42/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/48
RA	5763	.	1	863353	0	T	C	consensus_score=245.9	frequency=1	major_base=C	major_cov=43/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/45
RA	5764	.	1	863365	0	C	T	bias_e_value=1751210	bias_p_value=0.830296	consensus_score=241.9	fisher_strand_p_value=0.477273	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=41/46	major_frequency=9.886e-01	minor_base=C	minor_cov=1/0	new_cov=41/46	polymorphism_frequency=9.886e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=42/46
RA	5765	.	1	863374	0	G	T	consensus_score=239.3	frequency=1	major_base=T	major_cov=41/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/47
RA	5766	.	1	863389	0	C	T	bias_e_value=647080	bias_p_value=0.306798	consensus_score=217.9	fisher_strand_p_value=0.0900343	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=37/48	major_frequency=9.659e-01	minor_base=G	minor_cov=3/0	new_cov=37/48	polymorphism_frequency=9.659e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/48
RA	5767	.	1	863401	0	T	C	consensus_score=251.1	frequency=1	major_base=C	major_cov=40/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/51
RA	5768	.	1	863414	0	G	A	consensus_score=250.4	frequency=1	major_base=A	major_cov=41/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/50
RA	5769	.	1	863419	0	A	G	consensus_score=255.1	frequency=1	major_base=G	major_cov=41/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/51
RA	5770	.	1	863443	0	C	T	bias_e_value=1669810	bias_p_value=0.791699	consensus_score=230.8	fisher_strand_p_value=0.428571	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=35/48	major_frequency=9.881e-01	minor_base=G	minor_cov=1/0	new_cov=35/48	polymorphism_frequency=9.881e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/48
RA	5771	.	1	863503	0	C	T	bias_e_value=1694550	bias_p_value=0.80343	consensus_score=175.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.442688	major_base=T	major_cov=27/43	major_frequency=9.859e-01	minor_base=A	minor_cov=0/1	new_cov=27/43	polymorphism_frequency=9.859e-01	polymorphism_score=-3.8	prediction=consensus	ref_cov=0/0	total_cov=27/44
RA	5772	.	1	863533	0	C	T	consensus_score=140.7	frequency=1	major_base=T	major_cov=24/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/28
RA	5773	.	1	863542	0	C	T	consensus_score=119.5	frequency=1	major_base=T	major_cov=24/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/22
RA	5774	.	1	863547	0	T	C	consensus_score=106.1	frequency=1	major_base=C	major_cov=21/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/18
RA	5775	.	1	863560	0	G	A	consensus_score=109.3	frequency=1	major_base=A	major_cov=25/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/16
RA	5776	.	1	863574	0	G	C	consensus_score=98.7	frequency=1	major_base=C	major_cov=23/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/12
RA	5777	.	1	863575	0	C	T	consensus_score=90.3	frequency=1	major_base=T	major_cov=23/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/12
RA	5778	.	1	863588	0	C	T	consensus_score=101.8	frequency=1	major_base=T	major_cov=26/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/13
RA	5779	.	1	863596	0	C	T	consensus_score=93.0	frequency=1	major_base=T	major_cov=25/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/11
RA	5780	.	1	863599	0	T	C	consensus_score=100.9	frequency=1	major_base=C	major_cov=25/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/11
RA	5781	.	1	863600	0	G	A	consensus_score=92.7	frequency=1	major_base=A	major_cov=25/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/11
RA	5782	.	1	863605	0	C	T	consensus_score=126.1	frequency=1	major_base=T	major_cov=30/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/18
RA	5783	.	1	863625	0	G	A	consensus_score=137.8	frequency=1	major_base=A	major_cov=31/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/18
RA	5784	.	1	863636	0	T	C	consensus_score=141.9	frequency=1	major_base=C	major_cov=33/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/18
RA	5785	.	1	863638	0	C	T	consensus_score=135.9	frequency=1	major_base=T	major_cov=33/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/18
RA	5786	.	1	863662	0	G	A	consensus_score=148.8	frequency=1	major_base=A	major_cov=35/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/18
RA	5787	.	1	863674	0	T	C	consensus_score=152.7	frequency=1	major_base=C	major_cov=39/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/17
RA	5788	.	1	863679	0	T	C	consensus_score=148.6	frequency=1	major_base=C	major_cov=38/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/16
RA	5789	.	1	863680	0	G	A	consensus_score=143.3	frequency=1	major_base=A	major_cov=38/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/16
RA	5790	.	1	863692	0	C	T	consensus_score=186.0	frequency=1	major_base=T	major_cov=46/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/21
RA	5791	.	1	863698	0	A	G	consensus_score=187.2	frequency=1	major_base=G	major_cov=46/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/20
RA	5792	.	1	863700	0	T	C	consensus_score=185.8	frequency=1	major_base=C	major_cov=46/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/20
RA	5793	.	1	863704	0	T	C	consensus_score=185.0	frequency=1	major_base=C	major_cov=46/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/20
RA	5794	.	1	863755	0	C	T	consensus_score=180.6	frequency=1	major_base=T	major_cov=44/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/21
RA	5795	.	1	863770	0	C	T	consensus_score=174.7	frequency=1	major_base=T	major_cov=42/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/21
RA	5796	.	1	863773	0	A	G	consensus_score=172.2	frequency=1	major_base=G	major_cov=42/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/21
RA	5797	.	1	863791	0	C	T	consensus_score=192.3	frequency=1	major_base=T	major_cov=45/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/24
RA	5798	.	1	863797	0	T	C	consensus_score=190.5	frequency=1	major_base=C	major_cov=44/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/24
RA	5799	.	1	863813	0	T	C	consensus_score=201.8	frequency=1	major_base=C	major_cov=48/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/25
RA	5800	.	1	863829	0	C	T	consensus_score=220.1	frequency=1	major_base=T	major_cov=49/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/30
RA	5801	.	1	863851	0	G	T	consensus_score=198.1	frequency=1	major_base=T	major_cov=47/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/25
RA	5802	.	1	863868	0	C	T	consensus_score=168.6	frequency=1	major_base=T	major_cov=42/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/22
RA	5803	.	1	863869	0	A	G	consensus_score=176.0	frequency=1	major_base=G	major_cov=42/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/22
RA	5804	.	1	863875	0	C	T	consensus_score=172.3	frequency=1	major_base=T	major_cov=42/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/22
RA	5805	.	1	863878	0	C	T	consensus_score=170.2	frequency=1	major_base=T	major_cov=42/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/22
RA	5806	.	1	863881	0	C	T	consensus_score=171.0	frequency=1	major_base=T	major_cov=42/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/22
RA	5807	.	1	863888	0	C	T	consensus_score=182.9	frequency=1	major_base=T	major_cov=45/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/22
RA	5808	.	1	863900	0	A	G	consensus_score=198.9	frequency=1	major_base=G	major_cov=45/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/29
RA	5809	.	1	863958	0	G	A	consensus_score=209.4	frequency=1	major_base=A	major_cov=46/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/31
RA	5810	.	1	863959	0	G	A	consensus_score=208.5	frequency=1	major_base=A	major_cov=46/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/31
RA	5811	.	1	863966	0	A	G	consensus_score=220.2	frequency=1	major_base=G	major_cov=46/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/31
RA	5812	.	1	863971	0	C	T	consensus_score=211.6	frequency=1	major_base=T	major_cov=46/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/31
RA	5813	.	1	863984	0	C	T	consensus_score=226.8	frequency=1	major_base=T	major_cov=49/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/34
RA	5814	.	1	863987	0	T	C	consensus_score=232.5	frequency=1	major_base=C	major_cov=49/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/34
RA	5815	.	1	863993	0	T	C	consensus_score=220.3	frequency=1	major_base=C	major_cov=46/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/34
RA	5816	.	1	863995	0	T	C	consensus_score=218.4	frequency=1	major_base=C	major_cov=46/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/34
RA	5817	.	1	864001	0	C	G	consensus_score=201.8	frequency=1	major_base=G	major_cov=42/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/32
RA	5818	.	1	864004	0	T	C	consensus_score=206.1	frequency=1	major_base=C	major_cov=42/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/32
RA	5819	.	1	864012	0	A	G	consensus_score=220.9	frequency=1	major_base=G	major_cov=43/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/34
RA	5820	.	1	864021	0	A	C	consensus_score=208.6	frequency=1	major_base=C	major_cov=38/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/37
RA	5821	.	1	864036	0	A	T	consensus_score=196.8	frequency=1	major_base=T	major_cov=35/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/39
RA	5822	.	1	864040	0	C	T	consensus_score=200.6	frequency=1	major_base=T	major_cov=35/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/39
RA	5823	.	1	864059	0	G	A	consensus_score=188.5	frequency=1	major_base=A	major_cov=30/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/39
RA	5824	.	1	864088	0	T	C	consensus_score=158.5	frequency=1	major_base=C	major_cov=25/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/33
RA	5825	.	1	864090	0	A	G	consensus_score=160.4	frequency=1	major_base=G	major_cov=25/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/33
RA	5826	.	1	864091	0	C	T	consensus_score=156.8	frequency=1	major_base=T	major_cov=25/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/33
RA	5827	.	1	864094	0	G	A	consensus_score=155.9	frequency=1	major_base=A	major_cov=25/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/33
RA	5828	.	1	864121	0	C	T	consensus_score=159.1	frequency=1	major_base=T	major_cov=25/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/31
RA	5829	.	1	864130	0	A	C	consensus_score=158.3	frequency=1	major_base=C	major_cov=25/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/31
RA	5830	.	1	864145	0	G	A	consensus_score=136.1	frequency=1	major_base=A	major_cov=24/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/27
RA	5831	.	1	864160	0	A	G	consensus_score=132.2	frequency=1	major_base=G	major_cov=23/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/24
RA	5832	.	1	864169	0	A	G	consensus_score=119.2	frequency=1	major_base=G	major_cov=21/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/22
RA	5833	.	1	864171	0	C	A	consensus_score=116.0	frequency=1	major_base=A	major_cov=21/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/22
RA	5834	.	1	864172	0	G	A	consensus_score=116.4	frequency=1	major_base=A	major_cov=21/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/22
RA	5835	.	1	864179	0	A	C	consensus_score=120.7	frequency=1	major_base=C	major_cov=21/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/22
RA	5836	.	1	864184	0	C	T	consensus_score=114.9	frequency=1	major_base=T	major_cov=21/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/22
RA	5837	.	1	864201	0	C	T	consensus_score=72.2	frequency=1	major_base=T	major_cov=15/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/13
RA	5838	.	1	864220	0	G	T	consensus_score=84.1	frequency=1	major_base=T	major_cov=17/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/15
RA	5839	.	1	864236	0	T	G	consensus_score=86.1	frequency=1	major_base=G	major_cov=20/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/12
RA	5840	.	1	864240	0	G	C	consensus_score=83.2	frequency=1	major_base=C	major_cov=19/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/12
RA	5841	.	1	864243	0	T	C	consensus_score=83.2	frequency=1	major_base=C	major_cov=19/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/12
RA	5842	.	1	864244	0	C	G	consensus_score=83.5	frequency=1	major_base=G	major_cov=19/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/12
RA	5843	.	1	864253	0	C	G	consensus_score=80.7	frequency=1	major_base=G	major_cov=19/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/11
RA	5844	.	1	864259	0	G	A	consensus_score=73.1	frequency=1	major_base=A	major_cov=18/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/10
RA	5845	.	1	864260	0	C	T	consensus_score=74.9	frequency=1	major_base=T	major_cov=18/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/10
RA	5846	.	1	864262	0	A	G	consensus_score=73.1	frequency=1	major_base=G	major_cov=18/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/10
RA	5847	.	1	864277	0	C	T	consensus_score=77.8	frequency=1	major_base=T	major_cov=15/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/14
RA	5848	.	1	864279	0	A	G	consensus_score=77.0	frequency=1	major_base=G	major_cov=15/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/14
RA	5849	.	1	864284	0	G	A	consensus_score=81.3	frequency=1	major_base=A	major_cov=16/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/15
RA	5850	.	1	864298	0	A	G	consensus_score=89.4	frequency=1	major_base=G	major_cov=15/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/18
RA	5851	.	1	864315	0	C	T	consensus_score=84.9	frequency=1	major_base=T	major_cov=13/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/19
RA	5852	.	1	864316	0	G	A	consensus_score=84.6	frequency=1	major_base=A	major_cov=13/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/19
RA	5853	.	1	864331	0	C	T	consensus_score=95.6	frequency=1	major_base=T	major_cov=15/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/21
RA	5854	.	1	864346	0	T	C	consensus_score=95.9	frequency=1	major_base=C	major_cov=14/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/23
RA	5855	.	1	864366	0	A	C	consensus_score=141.7	frequency=1	major_base=C	major_cov=24/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/26
RA	5856	.	1	864373	0	G	T	consensus_score=139.1	frequency=1	major_base=T	major_cov=24/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/26
RA	5857	.	1	864374	0	A	G	consensus_score=140.7	frequency=1	major_base=G	major_cov=24/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/26
RA	5858	.	1	864376	0	T	C	consensus_score=134.2	frequency=1	major_base=C	major_cov=24/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/26
RA	5859	.	1	864378	0	C	T	consensus_score=130.1	frequency=1	major_base=T	major_cov=24/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/26
RA	5860	.	1	864388	0	T	C	consensus_score=147.8	frequency=1	major_base=C	major_cov=26/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/26
RA	5861	.	1	864400	0	G	C	consensus_score=166.3	frequency=1	major_base=C	major_cov=32/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/28
RA	5862	.	1	864403	0	C	G	consensus_score=164.2	frequency=1	major_base=G	major_cov=32/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/28
RA	5863	.	1	864415	0	C	T	consensus_score=174.7	frequency=1	major_base=T	major_cov=34/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/31
RA	5864	.	1	864421	0	A	G	consensus_score=185.2	frequency=1	major_base=G	major_cov=36/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/31
RA	5865	.	1	864424	0	C	T	consensus_score=186.3	frequency=1	major_base=T	major_cov=36/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/31
RA	5866	.	1	864454	0	G	A	consensus_score=221.7	frequency=1	major_base=A	major_cov=40/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/40
RA	5867	.	1	864455	0	A	G	consensus_score=225.9	frequency=1	major_base=G	major_cov=40/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/40
RA	5868	.	1	864460	0	A	C	consensus_score=237.3	frequency=1	major_base=C	major_cov=42/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/44
RA	5869	.	1	864475	0	G	T	consensus_score=237.0	frequency=1	major_base=T	major_cov=39/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/44
RA	5870	.	1	864500	0	T	C	consensus_score=232.7	frequency=1	major_base=C	major_cov=41/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/42
RA	5871	.	1	864541	0	T	C	consensus_score=226.6	frequency=1	major_base=C	major_cov=40/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/41
RA	5872	.	1	864575	0	A	C	consensus_score=230.1	frequency=1	major_base=C	major_cov=40/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/42
RA	5873	.	1	864584	0	C	T	consensus_score=211.4	frequency=1	major_base=T	major_cov=38/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/40
RA	5874	.	1	864589	0	C	T	consensus_score=189.6	frequency=1	major_base=T	major_cov=31/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/36
RA	5875	.	1	864592	0	T	C	consensus_score=187.1	frequency=1	major_base=C	major_cov=31/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/36
RA	5876	.	1	864595	0	C	T	consensus_score=183.1	frequency=1	major_base=T	major_cov=31/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/36
RA	5877	.	1	864605	0	A	G	consensus_score=195.1	frequency=1	major_base=G	major_cov=32/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/38
RA	5878	.	1	864626	0	G	A	consensus_score=196.5	frequency=1	major_base=A	major_cov=31/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/41
RA	5879	.	1	864633	0	A	G	consensus_score=209.7	frequency=1	major_base=G	major_cov=33/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/42
RA	5880	.	1	864644	0	T	A	consensus_score=187.7	frequency=1	major_base=A	major_cov=28/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/39
RA	5881	.	1	864676	0	C	T	consensus_score=166.6	frequency=1	major_base=T	major_cov=26/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/36
RA	5882	.	1	864691	0	A	C	consensus_score=180.9	frequency=1	major_base=C	major_cov=29/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/35
RA	5883	.	1	864727	0	G	A	consensus_score=162.3	frequency=1	major_base=A	major_cov=30/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/31
RA	5884	.	1	864746	0	C	T	consensus_score=159.1	frequency=1	major_base=T	major_cov=26/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/34
RA	5885	.	1	864751	0	G	A	consensus_score=163.5	frequency=1	major_base=A	major_cov=26/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/35
RA	5886	.	1	864754	0	G	A	consensus_score=166.6	frequency=1	major_base=A	major_cov=26/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/35
RA	5887	.	1	864759	0	A	G	consensus_score=156.7	frequency=1	major_base=G	major_cov=24/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/33
RA	5888	.	1	864763	0	G	A	consensus_score=160.0	frequency=1	major_base=A	major_cov=24/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/33
RA	5889	.	1	864764	0	G	A	consensus_score=154.0	frequency=1	major_base=A	major_cov=24/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/33
RA	5890	.	1	864767	0	T	C	consensus_score=161.7	frequency=1	major_base=C	major_cov=24/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/33
RA	5891	.	1	864775	0	T	C	consensus_score=171.5	frequency=1	major_base=C	major_cov=27/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/33
RA	5892	.	1	864796	0	G	A	consensus_score=150.6	frequency=1	major_base=A	major_cov=32/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/24
RA	5893	.	1	864799	0	C	A	consensus_score=151.6	frequency=1	major_base=A	major_cov=32/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/24
RA	5894	.	1	864800	0	A	G	consensus_score=158.2	frequency=1	major_base=G	major_cov=32/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/24
RA	5895	.	1	864801	0	A	G	consensus_score=154.5	frequency=1	major_base=G	major_cov=32/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/24
RA	5896	.	1	864807	0	G	A	consensus_score=150.6	frequency=1	major_base=A	major_cov=32/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/24
RA	5897	.	1	864808	0	T	G	consensus_score=154.0	frequency=1	major_base=G	major_cov=32/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/24
RA	5898	.	1	864811	0	C	T	consensus_score=149.9	frequency=1	major_base=T	major_cov=32/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/24
RA	5899	.	1	864814	0	C	T	consensus_score=151.2	frequency=1	major_base=T	major_cov=32/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/24
RA	5900	.	1	864827	0	A	C	consensus_score=204.7	frequency=1	major_base=C	major_cov=37/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/36
RA	5901	.	1	864835	0	G	A	bias_e_value=2109140	bias_p_value=1	consensus_score=186.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=33/36	major_frequency=9.857e-01	minor_base=G	minor_cov=0/1	new_cov=33/36	polymorphism_frequency=9.857e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=33/37
RA	5902	.	1	864850	0	T	C	consensus_score=183.3	frequency=1	major_base=C	major_cov=33/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/35
RA	5903	.	1	864852	0	C	T	consensus_score=194.2	frequency=1	major_base=T	major_cov=33/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/35
RA	5904	.	1	864853	0	A	G	consensus_score=192.5	frequency=1	major_base=G	major_cov=33/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/35
RA	5905	.	1	864856	0	T	C	consensus_score=185.4	frequency=1	major_base=C	major_cov=33/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/35
RA	5906	.	1	864859	0	T	C	consensus_score=190.5	frequency=1	major_base=C	major_cov=33/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/35
RA	5907	.	1	864922	0	A	T	consensus_score=182.7	frequency=1	major_base=T	major_cov=37/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/29
RA	5908	.	1	864923	0	C	T	consensus_score=186.4	frequency=1	major_base=T	major_cov=37/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/29
RA	5909	.	1	864949	0	A	G	consensus_score=179.8	frequency=1	major_base=G	major_cov=35/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/29
RA	5910	.	1	864967	0	G	A	consensus_score=170.1	frequency=1	major_base=A	major_cov=35/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/26
RA	5911	.	1	864970	0	A	G	consensus_score=168.7	frequency=1	major_base=G	major_cov=35/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/26
RA	5912	.	1	864993	0	G	.	bias_e_value=2109140	bias_p_value=1	consensus_score=258.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=.	major_cov=35/27	major_frequency=9.841e-01	minor_base=G	minor_cov=1/0	new_cov=35/27	polymorphism_frequency=9.841e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=1/0	total_cov=36/27
RA	5913	.	1	864995	1	.	A	bias_e_value=2109140	bias_p_value=1	consensus_score=165.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=35/27	major_frequency=9.841e-01	minor_base=.	minor_cov=1/0	new_cov=35/27	polymorphism_frequency=9.841e-01	polymorphism_score=-4.6	prediction=consensus	ref_cov=1/0	total_cov=36/27
RA	5914	.	1	865021	0	C	T	consensus_score=159.2	frequency=1	major_base=T	major_cov=34/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/25
RA	5915	.	1	865051	0	G	A	consensus_score=149.0	frequency=1	major_base=A	major_cov=34/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/18
RA	5916	.	1	865057	0	G	C	consensus_score=144.9	frequency=1	major_base=C	major_cov=34/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/18
RA	5917	.	1	865103	0	G	A	consensus_score=153.2	frequency=1	major_base=A	major_cov=34/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/20
RA	5918	.	1	865114	0	A	G	consensus_score=141.9	frequency=1	major_base=G	major_cov=33/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/19
RA	5919	.	1	865135	0	A	G	consensus_score=163.5	frequency=1	major_base=G	major_cov=37/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/22
RA	5920	.	1	865141	0	A	G	consensus_score=175.0	frequency=1	major_base=G	major_cov=40/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/24
RA	5921	.	1	865147	0	C	T	consensus_score=166.1	frequency=1	major_base=T	major_cov=37/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/23
RA	5922	.	1	865153	0	G	A	consensus_score=161.9	frequency=1	major_base=A	major_cov=34/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/23
RA	5923	.	1	865161	0	G	A	consensus_score=163.1	frequency=1	major_base=A	major_cov=34/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/26
RA	5924	.	1	865165	0	A	G	consensus_score=154.2	frequency=1	major_base=G	major_cov=31/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/26
RA	5925	.	1	865182	0	A	G	consensus_score=191.4	frequency=1	major_base=G	major_cov=36/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/33
RA	5926	.	1	865189	0	G	A	consensus_score=195.4	frequency=1	major_base=A	major_cov=35/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/34
RA	5927	.	1	865204	0	T	C	consensus_score=200.1	frequency=1	major_base=C	major_cov=35/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/35
RA	5928	.	1	865208	0	C	T	consensus_score=195.8	frequency=1	major_base=T	major_cov=34/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/35
RA	5929	.	1	865219	0	G	A	consensus_score=191.6	frequency=1	major_base=A	major_cov=36/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/34
RA	5930	.	1	865237	0	G	A	consensus_score=204.3	frequency=1	major_base=A	major_cov=33/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/40
RA	5931	.	1	865245	0	T	C	consensus_score=191.3	frequency=1	major_base=C	major_cov=31/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/39
RA	5932	.	1	865251	0	C	G	consensus_score=188.4	frequency=1	major_base=G	major_cov=30/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/38
RA	5933	.	1	865277	0	A	G	consensus_score=190.4	frequency=1	major_base=G	major_cov=31/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/37
RA	5934	.	1	865282	0	T	C	consensus_score=164.9	frequency=1	major_base=C	major_cov=24/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/37
RA	5935	.	1	865283	0	T	C	consensus_score=164.0	frequency=1	major_base=C	major_cov=24/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/37
RA	5936	.	1	865289	0	T	G	consensus_score=163.2	frequency=1	major_base=G	major_cov=24/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/37
RA	5937	.	1	865291	0	C	T	consensus_score=157.6	frequency=1	major_base=T	major_cov=24/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/37
RA	5938	.	1	865318	0	G	A	consensus_score=181.5	frequency=1	major_base=A	major_cov=27/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/40
RA	5939	.	1	865332	0	C	T	consensus_score=178.9	frequency=1	major_base=T	major_cov=28/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/39
RA	5940	.	1	865361	0	T	G	consensus_score=214.1	frequency=1	major_base=G	major_cov=32/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/43
RA	5941	.	1	865372	0	G	A	consensus_score=207.5	frequency=1	major_base=A	major_cov=31/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/43
RA	5942	.	1	865374	0	G	A	consensus_score=201.4	frequency=1	major_base=A	major_cov=31/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/43
RA	5943	.	1	865391	0	A	G	consensus_score=214.1	frequency=1	major_base=G	major_cov=30/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/46
RA	5944	.	1	865405	0	A	G	consensus_score=208.9	frequency=1	major_base=G	major_cov=34/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/40
RA	5945	.	1	865408	0	C	T	consensus_score=201.2	frequency=1	major_base=T	major_cov=34/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/40
RA	5946	.	1	865424	0	C	A	consensus_score=189.7	frequency=1	major_base=A	major_cov=33/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/37
RA	5947	.	1	865439	0	C	T	bias_e_value=1774170	bias_p_value=0.841182	consensus_score=170.7	fisher_strand_p_value=0.492308	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=31/33	major_frequency=9.697e-01	minor_base=C	minor_cov=2/0	new_cov=31/33	polymorphism_frequency=9.697e-01	polymorphism_score=NA	prediction=consensus	ref_cov=2/0	total_cov=33/33
RA	5948	.	1	865442	0	A	G	consensus_score=178.5	frequency=1	major_base=G	major_cov=33/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/33
RA	5949	.	1	865443	0	A	C	consensus_score=187.3	frequency=1	major_base=C	major_cov=33/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/33
RA	5950	.	1	865489	0	C	T	consensus_score=189.2	frequency=1	major_base=T	major_cov=31/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/39
RA	5951	.	1	865509	0	G	A	consensus_score=206.0	frequency=1	major_base=A	major_cov=33/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/43
RA	5952	.	1	865521	1	.	T	consensus_score=207.3	frequency=1	major_base=T	major_cov=30/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/44
RA	5953	.	1	865537	0	C	A	consensus_score=193.4	frequency=1	major_base=A	major_cov=31/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/40
RA	5954	.	1	865542	0	G	A	consensus_score=196.4	frequency=1	major_base=A	major_cov=32/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/40
RA	5955	.	1	865553	0	C	T	consensus_score=197.8	frequency=1	major_base=T	major_cov=32/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/41
RA	5956	.	1	865586	0	G	C	consensus_score=197.1	frequency=1	major_base=C	major_cov=25/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/44
RA	5957	.	1	865610	0	A	C	consensus_score=162.3	frequency=1	major_base=C	major_cov=22/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/37
RA	5958	.	1	865613	0	C	T	consensus_score=156.3	frequency=1	major_base=T	major_cov=22/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/37
RA	5959	.	1	865634	0	A	G	consensus_score=174.9	frequency=1	major_base=G	major_cov=25/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/39
RA	5960	.	1	865643	0	A	G	consensus_score=175.3	frequency=1	major_base=G	major_cov=23/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/41
RA	5961	.	1	865658	0	T	C	consensus_score=167.9	frequency=1	major_base=C	major_cov=20/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/42
RA	5962	.	1	865661	0	T	C	consensus_score=173.8	frequency=1	major_base=C	major_cov=20/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/42
RA	5963	.	1	865670	0	C	T	consensus_score=158.9	frequency=1	major_base=T	major_cov=21/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/40
RA	5964	.	1	865679	0	G	A	consensus_score=174.7	frequency=1	major_base=A	major_cov=22/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/42
RA	5965	.	1	865695	0	G	A	consensus_score=161.7	frequency=1	major_base=A	major_cov=20/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/40
RA	5966	.	1	865717	0	G	A	consensus_score=152.8	frequency=1	major_base=A	major_cov=20/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/37
RA	5967	.	1	865721	0	A	C	consensus_score=141.2	frequency=1	major_base=C	major_cov=20/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/34
RA	5968	.	1	865779	0	T	C	consensus_score=133.3	frequency=1	major_base=C	major_cov=25/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/33
RA	5969	.	1	865785	0	T	C	consensus_score=130.7	frequency=1	major_base=C	major_cov=24/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/34
RA	5970	.	1	865817	0	G	T	consensus_score=132.7	frequency=1	major_base=T	major_cov=28/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/35
RA	5971	.	1	865821	0	G	C	consensus_score=136.8	frequency=1	major_base=C	major_cov=28/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/35
RA	5972	.	1	865822	0	G	A	consensus_score=134.5	frequency=1	major_base=A	major_cov=28/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/35
RA	5973	.	1	865829	0	C	A	consensus_score=145.4	frequency=1	major_base=A	major_cov=29/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/38
RA	5974	.	1	865951	0	C	T	consensus_score=135.3	frequency=1	major_base=T	major_cov=29/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/31
RA	5975	.	1	866006	0	A	.	consensus_score=133.6	frequency=1	major_base=.	major_cov=22/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/21
RA	5976	.	1	866053	0	A	G	consensus_score=141.5	frequency=1	major_base=G	major_cov=29/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/27
RA	5977	.	1	866062	0	C	T	consensus_score=132.1	frequency=1	major_base=T	major_cov=27/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/24
RA	5978	.	1	866115	0	C	T	consensus_score=177.0	frequency=1	major_base=T	major_cov=34/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/31
RA	5979	.	1	866118	0	C	T	consensus_score=174.3	frequency=1	major_base=T	major_cov=34/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/31
RA	5980	.	1	866136	0	G	T	consensus_score=190.3	frequency=1	major_base=T	major_cov=38/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/32
RA	5981	.	1	866141	0	T	C	consensus_score=197.2	frequency=1	major_base=C	major_cov=38/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/33
RA	5982	.	1	866207	0	C	T	consensus_score=210.3	frequency=1	major_base=T	major_cov=38/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/40
RA	5983	.	1	866244	0	T	C	consensus_score=249.9	frequency=1	major_base=C	major_cov=45/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/48
RA	5984	.	1	866286	0	C	T	consensus_score=255.6	frequency=1	major_base=T	major_cov=44/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/49
RA	5985	.	1	866290	0	C	T	consensus_score=248.4	frequency=1	major_base=T	major_cov=42/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/49
RA	5986	.	1	866336	0	C	A	consensus_score=283.4	frequency=1	major_base=A	major_cov=45/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/58
RA	5987	.	1	866337	0	G	A	consensus_score=285.4	frequency=1	major_base=A	major_cov=45/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/58
RA	5988	.	1	866348	0	C	A	consensus_score=286.8	frequency=1	major_base=A	major_cov=46/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/59
RA	5989	.	1	866356	0	A	G	consensus_score=293.6	frequency=1	major_base=G	major_cov=45/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/59
RA	5990	.	1	866517	0	C	T	bias_e_value=1353470	bias_p_value=0.641718	consensus_score=196.5	fisher_strand_p_value=0.453333	frequency=1	ks_quality_p_value=0.626863	major_base=T	major_cov=33/41	major_frequency=9.867e-01	minor_base=C	minor_cov=1/0	new_cov=33/41	polymorphism_frequency=9.867e-01	polymorphism_score=-5.0	prediction=consensus	ref_cov=1/0	total_cov=34/41
RA	5991	.	1	866610	0	A	G	bias_e_value=1728910	bias_p_value=0.81972	consensus_score=199.1	fisher_strand_p_value=0.472222	frequency=1	ks_quality_p_value=0.981012	major_base=G	major_cov=38/33	major_frequency=9.861e-01	minor_base=A	minor_cov=0/1	new_cov=38/33	polymorphism_frequency=9.861e-01	polymorphism_score=-5.1	prediction=consensus	ref_cov=0/1	total_cov=38/34
RA	5992	.	1	866619	0	A	G	bias_e_value=1739030	bias_p_value=0.824519	consensus_score=212.1	fisher_strand_p_value=0.473684	frequency=1	ks_quality_p_value=0.991266	major_base=G	major_cov=40/35	major_frequency=9.868e-01	minor_base=A	minor_cov=0/1	new_cov=40/35	polymorphism_frequency=9.868e-01	polymorphism_score=-5.1	prediction=consensus	ref_cov=0/1	total_cov=40/36
RA	5993	.	1	866808	0	T	C	bias_e_value=1666290	bias_p_value=0.790032	consensus_score=236.6	fisher_strand_p_value=0.428571	frequency=1	ks_quality_p_value=0.995421	major_base=C	major_cov=48/35	major_frequency=9.881e-01	minor_base=T	minor_cov=0/1	new_cov=48/35	polymorphism_frequency=9.881e-01	polymorphism_score=-4.9	prediction=consensus	ref_cov=0/1	total_cov=48/36
RA	5994	.	1	867029	0	C	T	consensus_score=195.1	frequency=1	major_base=T	major_cov=39/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/30
RA	5995	.	1	867050	0	A	C	consensus_score=204.9	frequency=1	major_base=C	major_cov=39/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/33
RA	5996	.	1	867701	0	C	A	consensus_score=249.6	frequency=1	major_base=A	major_cov=49/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/44
RA	5997	.	1	868829	0	C	T	consensus_score=200.5	frequency=1	major_base=T	major_cov=28/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/46
RA	5998	.	1	872073	0	T	C	consensus_score=289.2	frequency=1	major_base=C	major_cov=60/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/43
RA	5999	.	1	872558	0	C	G	consensus_score=325.3	frequency=1	major_base=G	major_cov=57/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/54
RA	6000	.	1	872665	0	C	T	consensus_score=309.9	frequency=1	major_base=T	major_cov=57/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/52
RA	6001	.	1	873298	0	C	T	consensus_score=364.3	frequency=1	major_base=T	major_cov=66/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/60
RA	6002	.	1	875485	1	.	T	bias_e_value=2085320	bias_p_value=0.988706	consensus_score=288.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.853522	major_base=T	major_cov=51/48	major_frequency=9.900e-01	minor_base=.	minor_cov=1/0	new_cov=51/48	polymorphism_frequency=9.900e-01	polymorphism_score=-3.6	prediction=consensus	ref_cov=1/0	total_cov=52/48
RA	6003	.	1	879239	0	A	C	consensus_score=282.3	frequency=1	major_base=C	major_cov=56/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/43
RA	6004	.	1	882984	0	A	C	bias_e_value=1544230	bias_p_value=0.732159	consensus_score=229.0	fisher_strand_p_value=0.364706	frequency=1	ks_quality_p_value=0.99888	major_base=C	major_cov=30/54	major_frequency=9.882e-01	minor_base=T	minor_cov=1/0	new_cov=30/54	polymorphism_frequency=9.882e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/54
RA	6005	.	1	884175	0	G	A	consensus_score=270.1	frequency=1	major_base=A	major_cov=47/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/52
RA	6006	.	1	884189	0	A	G	consensus_score=272.0	frequency=1	major_base=G	major_cov=45/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/52
RA	6007	.	1	884222	0	T	A	consensus_score=319.6	frequency=1	major_base=A	major_cov=52/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/60
RA	6008	.	1	884678	0	G	T	consensus_score=258.1	frequency=1	major_base=T	major_cov=48/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/46
RA	6009	.	1	884890	0	C	T	consensus_score=290.4	frequency=1	major_base=T	major_cov=60/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/45
RA	6010	.	1	885369	0	A	C	consensus_score=267.5	frequency=1	major_base=C	major_cov=50/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/45
RA	6011	.	1	888350	0	A	G	consensus_score=281.6	frequency=1	major_base=G	major_cov=48/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/53
RA	6012	.	1	888872	0	C	T	consensus_score=313.3	frequency=1	major_base=T	major_cov=52/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/63
RA	6013	.	1	891069	0	G	A	bias_e_value=0.000276127	bias_p_value=1.30919e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=133.0	fisher_strand_p_value=4.83912e-12	frequency=2.439e-01	ks_quality_p_value=1	major_base=G	major_cov=10/52	major_frequency=7.561e-01	minor_base=A	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.439e-01	polymorphism_score=13.5	prediction=polymorphism	ref_cov=10/52	total_cov=30/52
RA	6014	.	1	891083	0	A	T	bias_e_value=0.0234472	bias_p_value=1.11169e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=171.7	fisher_strand_p_value=4.9574e-10	frequency=2.143e-01	ks_quality_p_value=1	major_base=A	major_cov=14/52	major_frequency=7.857e-01	minor_base=T	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.143e-01	polymorphism_score=12.1	prediction=polymorphism	ref_cov=14/52	total_cov=32/52
RA	6015	.	1	892261	0	T	C	consensus_score=318.4	frequency=1	major_base=C	major_cov=50/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/64
RA	6016	.	1	892432	0	T	G	consensus_score=249.6	frequency=1	major_base=G	major_cov=41/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/50
RA	6017	.	1	892465	0	A	G	consensus_score=267.3	frequency=1	major_base=G	major_cov=43/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/49
RA	6018	.	1	892662	0	C	T	consensus_score=308.1	frequency=1	major_base=T	major_cov=45/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/63
RA	6019	.	1	894621	0	A	G	consensus_score=251.8	frequency=1	major_base=G	major_cov=49/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/43
RA	6020	.	1	894704	0	A	G	consensus_score=234.9	frequency=1	major_base=G	major_cov=41/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/43
RA	6021	.	1	894741	0	C	T	consensus_score=242.3	frequency=1	major_base=T	major_cov=37/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/51
RA	6022	.	1	895001	0	C	T	consensus_score=230.6	frequency=1	major_base=T	major_cov=48/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/36
RA	6023	.	1	895451	0	C	T	consensus_score=178.3	frequency=1	major_base=T	major_cov=44/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/20
RA	6024	.	1	896967	0	A	G	consensus_score=241.5	frequency=1	major_base=G	major_cov=50/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/37
RA	6025	.	1	897333	0	A	G	consensus_score=264.8	frequency=1	major_base=G	major_cov=51/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/45
RA	6026	.	1	898170	0	C	T	consensus_score=271.5	frequency=1	major_base=T	major_cov=39/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/56
RA	6027	.	1	898526	0	T	G	consensus_score=248.5	frequency=1	major_base=G	major_cov=50/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/35
RA	6028	.	1	898850	0	G	A	consensus_score=190.7	frequency=1	major_base=A	major_cov=28/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/42
RA	6029	.	1	900158	0	T	C	consensus_score=278.2	frequency=1	major_base=C	major_cov=46/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/50
RA	6030	.	1	900240	0	T	C	consensus_score=271.9	frequency=1	major_base=C	major_cov=42/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/52
RA	6031	.	1	901399	0	G	C	consensus_score=172.8	frequency=1	major_base=C	major_cov=31/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/32
RA	6032	.	1	901747	0	G	A	consensus_score=308.2	frequency=1	major_base=A	major_cov=65/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/49
RA	6033	.	1	902089	0	T	C	consensus_score=315.8	frequency=1	major_base=C	major_cov=55/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/55
RA	6034	.	1	903288	0	A	G	consensus_score=243.1	frequency=1	major_base=G	major_cov=45/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/44
RA	6035	.	1	904092	0	G	A	consensus_score=175.1	frequency=1	major_base=A	major_cov=29/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/35
RA	6036	.	1	905496	0	T	C	consensus_score=267.1	frequency=1	major_base=C	major_cov=54/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/41
RA	6037	.	1	905756	0	C	T	consensus_score=249.9	frequency=1	major_base=T	major_cov=50/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/41
RA	6038	.	1	906358	0	C	T	bias_e_value=2109140	bias_p_value=1	consensus_score=292.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999824	major_base=T	major_cov=51/55	major_frequency=9.907e-01	minor_base=G	minor_cov=0/1	new_cov=51/55	polymorphism_frequency=9.907e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/56
RA	6039	.	1	906551	0	T	C	consensus_score=131.2	frequency=1	major_base=C	major_cov=21/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/25
RA	6040	.	1	906972	0	G	A	consensus_score=266.5	frequency=1	major_base=A	major_cov=49/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/48
RA	6041	.	1	908434	0	C	T	consensus_score=240.2	frequency=1	major_base=T	major_cov=40/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/44
RA	6042	.	1	909515	0	T	C	consensus_score=339.3	frequency=1	major_base=C	major_cov=67/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=67/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/63
RA	6043	.	1	909913	0	A	G	bias_e_value=0.013858	bias_p_value=6.57045e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=87.6	fisher_strand_p_value=2.85981e-10	frequency=2.836e-01	ks_quality_p_value=1	major_base=A	major_cov=9/39	major_frequency=7.164e-01	minor_base=G	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.836e-01	polymorphism_score=14.3	prediction=polymorphism	ref_cov=9/39	total_cov=28/39
RA	6044	.	1	909942	0	T	G	bias_e_value=0.00273071	bias_p_value=1.2947e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=116.8	fisher_strand_p_value=5.24795e-11	frequency=3.333e-01	ks_quality_p_value=1	major_base=T	major_cov=11/37	major_frequency=6.667e-01	minor_base=G	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=3.333e-01	polymorphism_score=14.5	prediction=polymorphism	ref_cov=11/37	total_cov=35/37
RA	6045	.	1	910327	0	A	G	consensus_score=306.2	frequency=1	major_base=G	major_cov=49/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/60
RA	6046	.	1	911500	0	C	T	consensus_score=362.8	frequency=1	major_base=T	major_cov=69/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=69/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=69/63
RA	6047	.	1	912131	0	C	T	consensus_score=249.5	frequency=1	major_base=T	major_cov=42/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/50
RA	6048	.	1	913622	0	G	A	consensus_score=258.4	frequency=1	major_base=A	major_cov=55/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/40
RA	6049	.	1	915140	0	G	A	consensus_score=259.9	frequency=1	major_base=A	major_cov=59/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/37
RA	6050	.	1	915721	0	G	T	consensus_score=249.3	frequency=1	major_base=T	major_cov=43/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/44
RA	6051	.	1	916187	0	C	T	consensus_score=260.7	frequency=1	major_base=T	major_cov=51/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/45
RA	6052	.	1	917299	0	T	C	consensus_score=228.3	frequency=1	major_base=C	major_cov=42/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/41
RA	6053	.	1	917693	0	A	G	consensus_score=222.2	frequency=1	major_base=G	major_cov=39/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/41
RA	6054	.	1	919069	0	T	C	consensus_score=207.7	frequency=1	major_base=C	major_cov=43/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/29
RA	6055	.	1	919170	0	G	A	consensus_score=191.2	frequency=1	major_base=A	major_cov=41/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/31
RA	6056	.	1	919382	0	C	T	consensus_score=233.2	frequency=1	major_base=T	major_cov=48/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/34
RA	6057	.	1	921457	0	C	G	consensus_score=212.9	frequency=1	major_base=G	major_cov=39/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/35
RA	6058	.	1	921660	1	.	T	consensus_score=205.9	frequency=1	major_base=T	major_cov=48/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/28
RA	6059	.	1	922977	0	T	G	consensus_score=96.2	frequency=1	major_base=G	major_cov=19/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/16
RA	6060	.	1	923596	0	A	G	consensus_score=259.9	frequency=1	major_base=G	major_cov=52/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/41
RA	6061	.	1	925915	0	T	G	consensus_score=282.9	frequency=1	major_base=G	major_cov=50/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/51
RA	6062	.	1	926061	0	T	C	consensus_score=256.0	frequency=1	major_base=C	major_cov=34/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/55
RA	6063	.	1	926112	0	C	A	consensus_score=205.2	frequency=1	major_base=A	major_cov=28/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/49
RA	6064	.	1	926649	0	G	A	consensus_score=134.2	frequency=1	major_base=A	major_cov=20/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/30
RA	6065	.	1	928701	0	C	T	consensus_score=188.6	frequency=1	major_base=T	major_cov=30/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/41
RA	6066	.	1	928874	0	G	A	consensus_score=133.5	frequency=1	major_base=A	major_cov=21/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/27
RA	6067	.	1	929634	0	C	A	consensus_score=244.1	frequency=1	major_base=A	major_cov=45/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/45
RA	6068	.	1	930967	0	G	T	bias_e_value=1746440	bias_p_value=0.828033	consensus_score=268.6	fisher_strand_p_value=0.474227	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=51/45	major_frequency=9.897e-01	minor_base=G	minor_cov=0/1	new_cov=51/45	polymorphism_frequency=9.897e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=51/46
RA	6069	.	1	932475	0	T	C	consensus_score=251.8	frequency=1	major_base=C	major_cov=60/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/27
RA	6070	.	1	936603	0	G	A	consensus_score=250.4	frequency=1	major_base=A	major_cov=49/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/43
RA	6071	.	1	937989	0	G	A	consensus_score=236.4	frequency=1	major_base=A	major_cov=45/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/38
RA	6072	.	1	939545	0	G	A	consensus_score=308.9	frequency=1	major_base=A	major_cov=49/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/64
RA	6073	.	1	940346	0	C	T	consensus_score=281.8	frequency=1	major_base=T	major_cov=51/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/53
RA	6074	.	1	942155	0	T	C	consensus_score=265.0	frequency=1	major_base=C	major_cov=51/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/45
RA	6075	.	1	944006	0	T	C	bias_e_value=2109140	bias_p_value=1	consensus_score=287.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999817	major_base=C	major_cov=51/53	major_frequency=9.905e-01	minor_base=G	minor_cov=0/1	new_cov=51/53	polymorphism_frequency=9.905e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/54
RA	6076	.	1	944205	0	T	C	consensus_score=202.2	frequency=1	major_base=C	major_cov=33/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/40
RA	6077	.	1	944285	0	C	A	consensus_score=219.0	frequency=1	major_base=A	major_cov=39/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/43
RA	6078	.	1	944810	0	G	A	consensus_score=317.8	frequency=1	major_base=A	major_cov=63/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/54
RA	6079	.	1	945927	0	T	C	consensus_score=274.8	frequency=1	major_base=C	major_cov=60/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/36
RA	6080	.	1	947175	0	C	.	consensus_score=424.4	frequency=1	major_base=.	major_cov=51/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/49
RA	6081	.	1	948072	0	G	T	consensus_score=268.0	frequency=1	major_base=T	major_cov=44/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/54
RA	6082	.	1	952307	0	G	A	consensus_score=203.0	frequency=1	major_base=A	major_cov=34/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/38
RA	6083	.	1	953736	0	T	G	bias_e_value=1778260	bias_p_value=0.843119	consensus_score=284.6	fisher_strand_p_value=0.495146	frequency=1	ks_quality_p_value=0.99981	major_base=G	major_cov=50/52	major_frequency=9.903e-01	minor_base=A	minor_cov=1/0	new_cov=50/52	polymorphism_frequency=9.903e-01	polymorphism_score=-4.9	prediction=consensus	ref_cov=0/0	total_cov=51/52
RA	6084	.	1	954782	0	C	T	bias_e_value=2109140	bias_p_value=1	consensus_score=308.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=57/51	major_frequency=9.908e-01	minor_base=A	minor_cov=1/0	new_cov=57/51	polymorphism_frequency=9.908e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/51
RA	6085	.	1	955182	0	T	C	consensus_score=234.4	frequency=1	major_base=C	major_cov=38/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/48
RA	6086	.	1	958335	0	C	T	bias_e_value=2109140	bias_p_value=1	consensus_score=273.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=41/55	major_frequency=9.897e-01	minor_base=G	minor_cov=0/1	new_cov=41/55	polymorphism_frequency=9.897e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/56
RA	6087	.	1	958847	0	C	T	consensus_score=270.1	frequency=1	major_base=T	major_cov=34/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/62
RA	6088	.	1	959506	0	A	G	consensus_score=229.9	frequency=1	major_base=G	major_cov=39/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/41
RA	6089	.	1	959621	0	T	C	consensus_score=219.5	frequency=1	major_base=C	major_cov=42/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/37
RA	6090	.	1	959718	0	T	C	consensus_score=233.1	frequency=1	major_base=C	major_cov=44/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/39
RA	6091	.	1	960047	0	C	T	bias_e_value=4.00524e-08	bias_p_value=1.89899e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=66.2	fisher_strand_p_value=5.44443e-16	frequency=3.827e-01	ks_quality_p_value=0.963963	major_base=C	major_cov=43/7	major_frequency=6.173e-01	minor_base=T	minor_cov=0/31	new_cov=0/31	polymorphism_frequency=3.827e-01	polymorphism_score=30.4	prediction=polymorphism	ref_cov=43/7	total_cov=43/38
RA	6092	.	1	960536	1	.	C	bias_e_value=1213180	bias_p_value=0.575201	consensus_score=135.4	fisher_strand_p_value=0.235294	frequency=1	ks_quality_p_value=0.998401	major_base=C	major_cov=26/23	major_frequency=9.608e-01	minor_base=.	minor_cov=0/2	new_cov=26/23	polymorphism_frequency=9.608e-01	polymorphism_score=-1.3	prediction=consensus	ref_cov=0/2	total_cov=26/25
RA	6093	.	1	960553	0	T	G	consensus_score=138.1	frequency=1	major_base=G	major_cov=28/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/23
RA	6094	.	1	960932	0	T	C	consensus_score=253.3	frequency=1	major_base=C	major_cov=42/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/45
RA	6095	.	1	964111	0	C	G	consensus_score=335.7	frequency=1	major_base=G	major_cov=55/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/61
RA	6096	.	1	965339	0	A	G	consensus_score=329.5	frequency=1	major_base=G	major_cov=59/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/59
RA	6097	.	1	966711	0	G	A	bias_e_value=1730450	bias_p_value=0.820454	consensus_score=305.7	fisher_strand_p_value=0.464286	frequency=1	ks_quality_p_value=0.999839	major_base=A	major_cov=51/60	major_frequency=9.911e-01	minor_base=C	minor_cov=1/0	new_cov=51/60	polymorphism_frequency=9.911e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/60
RA	6098	.	1	966911	0	G	A	consensus_score=205.1	frequency=1	major_base=A	major_cov=31/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/44
RA	6099	.	1	968696	0	T	C	consensus_score=246.8	frequency=1	major_base=C	major_cov=44/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/45
RA	6100	.	1	968751	0	C	T	bias_e_value=1738770	bias_p_value=0.824398	consensus_score=279.1	fisher_strand_p_value=0.469388	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=52/45	major_frequency=9.898e-01	minor_base=G	minor_cov=0/1	new_cov=52/45	polymorphism_frequency=9.898e-01	polymorphism_score=-5.5	prediction=consensus	ref_cov=0/0	total_cov=52/46
RA	6101	.	1	969014	0	T	G	consensus_score=226.0	frequency=1	major_base=G	major_cov=28/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/52
RA	6102	.	1	969839	0	A	G	consensus_score=267.5	frequency=1	major_base=G	major_cov=57/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/38
RA	6103	.	1	970503	0	T	G	consensus_score=278.2	frequency=1	major_base=G	major_cov=52/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/48
RA	6104	.	1	970518	0	G	A	consensus_score=288.8	frequency=1	major_base=A	major_cov=53/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/52
RA	6105	.	1	973580	0	G	A	consensus_score=237.5	frequency=1	major_base=A	major_cov=46/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/41
RA	6106	.	1	973682	0	T	C	consensus_score=220.3	frequency=1	major_base=C	major_cov=38/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/42
RA	6107	.	1	975280	0	T	C	consensus_score=228.7	frequency=1	major_base=C	major_cov=40/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/40
RA	6108	.	1	975299	0	C	T	consensus_score=208.2	frequency=1	major_base=T	major_cov=38/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/36
RA	6109	.	1	978939	0	A	G	consensus_score=123.0	frequency=1	major_base=G	major_cov=18/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/26
RA	6110	.	1	981779	0	T	C	consensus_score=213.5	frequency=1	major_base=C	major_cov=38/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/36
RA	6111	.	1	984960	0	G	A	consensus_score=273.7	frequency=1	major_base=A	major_cov=42/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/55
RA	6112	.	1	985108	0	C	T	consensus_score=237.4	frequency=1	major_base=T	major_cov=33/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/50
RA	6113	.	1	986276	0	C	T	consensus_score=188.0	frequency=1	major_base=T	major_cov=35/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/35
RA	6114	.	1	987283	0	C	A	consensus_score=271.6	frequency=1	major_base=A	major_cov=51/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/48
RA	6115	.	1	987623	0	T	C	consensus_score=204.0	frequency=1	major_base=C	major_cov=30/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/53
RA	6116	.	1	989227	0	T	C	consensus_score=246.0	frequency=1	major_base=C	major_cov=43/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/43
RA	6117	.	1	989994	0	C	T	consensus_score=185.3	frequency=1	major_base=T	major_cov=35/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/33
RA	6118	.	1	992094	0	A	G	consensus_score=188.9	frequency=1	major_base=G	major_cov=27/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/41
RA	6119	.	1	993935	0	T	C	consensus_score=218.5	frequency=1	major_base=C	major_cov=43/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/34
RA	6120	.	1	996788	0	C	T	consensus_score=178.4	frequency=1	major_base=T	major_cov=37/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/30
RA	6121	.	1	997229	0	T	G	consensus_score=196.6	frequency=1	major_base=G	major_cov=39/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/32
RA	6122	.	1	997466	0	T	C	consensus_score=196.9	frequency=1	major_base=C	major_cov=34/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/36
RA	6123	.	1	997611	0	A	C	consensus_score=129.4	frequency=1	major_base=C	major_cov=31/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/16
RA	6124	.	1	997742	0	G	A	consensus_score=185.7	frequency=1	major_base=A	major_cov=46/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/25
RA	6125	.	1	998480	0	T	G	consensus_score=319.3	frequency=1	major_base=G	major_cov=47/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/67
RA	6126	.	1	999930	0	C	T	consensus_score=13.3	deleted=1	frequency=1	major_base=T	major_cov=3/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/4
RA	6127	.	1	999934	0	G	A	consensus_score=13.6	deleted=1	frequency=1	major_base=A	major_cov=3/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/4
RA	6128	.	1	999948	0	C	G	consensus_score=17.5	deleted=1	frequency=1	major_base=G	major_cov=3/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/5
RA	6129	.	1	999949	0	T	A	consensus_score=16.6	deleted=1	frequency=1	major_base=A	major_cov=3/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/5
RA	6130	.	1	999962	0	C	G	consensus_score=23.3	deleted=1	frequency=1	major_base=G	major_cov=4/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/6
RA	6131	.	1	999977	0	A	G	consensus_score=23.6	deleted=1	frequency=1	major_base=G	major_cov=4/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/6
RA	6132	.	1	999984	0	A	.	consensus_score=37.0	deleted=1	frequency=1	major_base=.	major_cov=4/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/6
RA	6133	.	1	999985	0	T	.	consensus_score=37.0	deleted=1	frequency=1	major_base=.	major_cov=4/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/6
RA	6134	.	1	999986	0	T	.	consensus_score=37.0	deleted=1	frequency=1	major_base=.	major_cov=4/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/6
RA	6135	.	1	1000000	0	G	A	consensus_score=33.0	deleted=1	frequency=1	major_base=A	major_cov=8/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/6
RA	6136	.	1	1000002	0	T	C	consensus_score=35.1	deleted=1	frequency=1	major_base=C	major_cov=8/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/6
RA	6137	.	1	1000014	0	A	T	bias_e_value=1669810	bias_p_value=0.791699	consensus_score=29.7	deleted=1	fisher_strand_p_value=0.428571	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=8/5	major_frequency=9.286e-01	minor_base=G	minor_cov=0/1	new_cov=8/5	polymorphism_frequency=9.286e-01	polymorphism_score=-5.4	prediction=consensus	ref_cov=0/0	total_cov=8/6
RA	6138	.	1	1000015	0	A	G	consensus_score=33.6	deleted=1	frequency=1	major_base=G	major_cov=8/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/6
RA	6139	.	1	1000016	0	C	T	consensus_score=32.8	deleted=1	frequency=1	major_base=T	major_cov=8/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/6
RA	6140	.	1	1000018	0	G	A	consensus_score=32.6	deleted=1	frequency=1	major_base=A	major_cov=8/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/6
RA	6141	.	1	1000045	0	G	A	consensus_score=57.9	deleted=1	frequency=1	major_base=A	major_cov=13/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/10
RA	6142	.	1	1000047	0	C	T	consensus_score=57.9	deleted=1	frequency=1	major_base=T	major_cov=13/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/10
RA	6143	.	1	1000080	0	G	A	consensus_score=60.5	frequency=1	major_base=A	major_cov=14/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/10
RA	6144	.	1	1000081	0	A	G	consensus_score=64.7	frequency=1	major_base=G	major_cov=14/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/10
RA	6145	.	1	1000083	0	C	T	consensus_score=60.0	frequency=1	major_base=T	major_cov=14/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/10
RA	6146	.	1	1000090	0	A	G	consensus_score=64.6	frequency=1	major_base=G	major_cov=14/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/10
RA	6147	.	1	1000094	0	A	C	consensus_score=62.3	frequency=1	major_base=C	major_cov=14/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/10
RA	6148	.	1	1000096	0	T	G	consensus_score=60.8	frequency=1	major_base=G	major_cov=14/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/10
RA	6149	.	1	1000099	0	A	T	consensus_score=62.2	frequency=1	major_base=T	major_cov=14/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/10
RA	6150	.	1	1000105	0	A	T	consensus_score=86.7	frequency=1	major_base=T	major_cov=17/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/16
RA	6151	.	1	1000118	0	G	A	consensus_score=82.3	frequency=1	major_base=A	major_cov=17/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/15
RA	6152	.	1	1000127	0	A	G	consensus_score=83.0	frequency=1	major_base=G	major_cov=17/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/15
RA	6153	.	1	1000134	0	T	C	consensus_score=89.3	frequency=1	major_base=C	major_cov=17/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/15
RA	6154	.	1	1000155	0	G	A	consensus_score=93.0	frequency=1	major_base=A	major_cov=19/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/17
RA	6155	.	1	1000187	0	A	C	consensus_score=108.6	frequency=1	major_base=C	major_cov=18/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/21
RA	6156	.	1	1000201	0	G	T	consensus_score=91.1	frequency=1	major_base=T	major_cov=16/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/20
RA	6157	.	1	1000202	0	G	T	consensus_score=91.3	frequency=1	major_base=T	major_cov=16/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/20
RA	6158	.	1	1000216	0	G	T	consensus_score=99.9	frequency=1	major_base=T	major_cov=16/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/20
RA	6159	.	1	1000219	0	A	G	consensus_score=93.3	frequency=1	major_base=G	major_cov=16/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/20
RA	6160	.	1	1000220	0	A	G	consensus_score=96.2	frequency=1	major_base=G	major_cov=16/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/20
RA	6161	.	1	1000236	0	C	T	consensus_score=82.5	frequency=1	major_base=T	major_cov=13/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/19
RA	6162	.	1	1000241	0	A	G	consensus_score=64.2	frequency=1	major_base=G	major_cov=8/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/16
RA	6163	.	1	1000244	0	G	.	consensus_score=98.5	frequency=1	major_base=.	major_cov=8/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/16
RA	6164	.	1	1000245	0	A	.	consensus_score=98.5	frequency=1	major_base=.	major_cov=8/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/16
RA	6165	.	1	1000246	0	T	.	consensus_score=98.5	frequency=1	major_base=.	major_cov=8/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/16
RA	6166	.	1	1000247	0	C	.	consensus_score=98.5	frequency=1	major_base=.	major_cov=8/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/16
RA	6167	.	1	1000248	0	A	.	consensus_score=98.5	frequency=1	major_base=.	major_cov=8/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/16
RA	6168	.	1	1000249	0	T	.	consensus_score=98.5	frequency=1	major_base=.	major_cov=8/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/16
RA	6169	.	1	1000251	0	A	.	consensus_score=98.4	frequency=1	major_base=.	major_cov=8/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/16
RA	6170	.	1	1000252	0	T	G	consensus_score=65.7	frequency=1	major_base=G	major_cov=8/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/16
RA	6171	.	1	1000255	0	C	.	consensus_score=96.8	frequency=1	major_base=.	major_cov=8/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/16
RA	6172	.	1	1000256	0	A	G	consensus_score=62.8	frequency=1	major_base=G	major_cov=8/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/16
RA	6173	.	1	1000260	0	C	.	consensus_score=96.8	frequency=1	major_base=.	major_cov=8/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/16
RA	6174	.	1	1000261	0	G	.	consensus_score=96.8	frequency=1	major_base=.	major_cov=8/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/16
RA	6175	.	1	1000262	0	C	.	consensus_score=96.8	frequency=1	major_base=.	major_cov=8/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/16
RA	6176	.	1	1000263	0	G	.	consensus_score=96.8	frequency=1	major_base=.	major_cov=8/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/16
RA	6177	.	1	1000266	0	C	T	consensus_score=66.0	frequency=1	major_base=T	major_cov=8/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/16
RA	6178	.	1	1000298	0	C	T	consensus_score=110.5	frequency=1	major_base=T	major_cov=16/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/27
RA	6179	.	1	1000307	0	G	A	consensus_score=118.7	frequency=1	major_base=A	major_cov=17/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/28
RA	6180	.	1	1000317	0	T	C	bias_e_value=1569290	bias_p_value=0.744039	consensus_score=125.2	fisher_strand_p_value=0.377778	frequency=1	ks_quality_p_value=0.995968	major_base=C	major_cov=16/28	major_frequency=9.778e-01	minor_base=.	minor_cov=1/0	new_cov=16/28	polymorphism_frequency=9.778e-01	polymorphism_score=-2.9	prediction=consensus	ref_cov=0/0	total_cov=17/28
RA	6181	.	1	1000318	0	C	T	bias_e_value=1565370	bias_p_value=0.742182	consensus_score=113.5	fisher_strand_p_value=0.377778	frequency=1	ks_quality_p_value=0.99095	major_base=T	major_cov=16/28	major_frequency=9.778e-01	minor_base=C	minor_cov=1/0	new_cov=16/28	polymorphism_frequency=9.778e-01	polymorphism_score=-4.9	prediction=consensus	ref_cov=1/0	total_cov=17/28
RA	6182	.	1	1000332	0	T	A	consensus_score=127.0	frequency=1	major_base=A	major_cov=19/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/28
RA	6183	.	1	1000339	0	A	G	consensus_score=136.3	frequency=1	major_base=G	major_cov=20/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/28
RA	6184	.	1	1000347	0	G	A	consensus_score=118.7	frequency=1	major_base=A	major_cov=22/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/23
RA	6185	.	1	1000350	0	A	G	consensus_score=128.7	frequency=1	major_base=G	major_cov=22/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/23
RA	6186	.	1	1000359	0	A	T	consensus_score=135.2	frequency=1	major_base=T	major_cov=28/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/23
RA	6187	.	1	1000368	0	G	A	consensus_score=139.9	frequency=1	major_base=A	major_cov=28/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/24
RA	6188	.	1	1000389	0	A	G	consensus_score=173.3	frequency=1	major_base=G	major_cov=29/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/31
RA	6189	.	1	1000395	0	A	C	consensus_score=173.1	frequency=1	major_base=C	major_cov=28/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/32
RA	6190	.	1	1000407	0	T	C	consensus_score=175.9	frequency=1	major_base=C	major_cov=29/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/32
RA	6191	.	1	1000422	0	T	G	consensus_score=196.2	frequency=1	major_base=G	major_cov=38/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/30
RA	6192	.	1	1000452	0	G	A	consensus_score=201.9	frequency=1	major_base=A	major_cov=40/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/36
RA	6193	.	1	1000463	0	A	G	consensus_score=215.5	frequency=1	major_base=G	major_cov=40/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/34
RA	6194	.	1	1000466	0	C	T	consensus_score=197.4	frequency=1	major_base=T	major_cov=40/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/34
RA	6195	.	1	1000470	0	A	G	consensus_score=204.2	frequency=1	major_base=G	major_cov=40/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/34
RA	6196	.	1	1000517	0	A	G	consensus_score=209.7	frequency=1	major_base=G	major_cov=38/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/38
RA	6197	.	1	1000543	0	A	G	consensus_score=216.1	frequency=1	major_base=G	major_cov=36/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/38
RA	6198	.	1	1000553	0	A	G	consensus_score=212.7	frequency=1	major_base=G	major_cov=36/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/37
RA	6199	.	1	1000581	0	T	C	consensus_score=152.2	frequency=1	major_base=C	major_cov=26/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/30
RA	6200	.	1	1000604	0	T	C	bias_e_value=2108740	bias_p_value=0.99981	consensus_score=141.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.980583	major_base=C	major_cov=21/29	major_frequency=9.804e-01	minor_base=G	minor_cov=0/1	new_cov=21/29	polymorphism_frequency=9.804e-01	polymorphism_score=-3.6	prediction=consensus	ref_cov=0/0	total_cov=21/30
RA	6201	.	1	1000613	0	T	C	consensus_score=138.7	frequency=1	major_base=C	major_cov=21/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/30
RA	6202	.	1	1000622	0	C	T	consensus_score=119.3	frequency=1	major_base=T	major_cov=18/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/25
RA	6203	.	1	1000630	0	A	G	consensus_score=102.4	frequency=1	major_base=G	major_cov=16/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/22
RA	6204	.	1	1000631	0	G	A	consensus_score=103.3	frequency=1	major_base=A	major_cov=16/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/22
RA	6205	.	1	1000637	0	T	C	consensus_score=106.2	frequency=1	major_base=C	major_cov=16/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/22
RA	6206	.	1	1000643	0	C	T	consensus_score=89.4	frequency=1	major_base=T	major_cov=14/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/22
RA	6207	.	1	1000646	0	T	A	consensus_score=92.7	frequency=1	major_base=A	major_cov=14/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/22
RA	6208	.	1	1000667	0	A	G	consensus_score=73.0	frequency=1	major_base=G	major_cov=8/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/19
RA	6209	.	1	1000676	0	T	G	consensus_score=59.3	frequency=1	major_base=G	major_cov=7/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/16
RA	6210	.	1	1000682	0	T	A	consensus_score=58.5	deleted=1	frequency=1	major_base=A	major_cov=7/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/16
RA	6211	.	1	1000687	0	C	T	consensus_score=51.0	deleted=1	frequency=1	major_base=T	major_cov=6/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/15
RA	6212	.	1	1000688	0	C	G	consensus_score=56.5	deleted=1	frequency=1	major_base=G	major_cov=6/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/15
RA	6213	.	1	1003443	0	T	C	consensus_score=331.7	frequency=1	major_base=C	major_cov=60/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/54
RA	6214	.	1	1003774	0	A	G	consensus_score=239.1	frequency=1	major_base=G	major_cov=43/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/40
RA	6215	.	1	1004069	0	G	A	consensus_score=170.4	frequency=1	major_base=A	major_cov=37/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/26
RA	6216	.	1	1004132	0	C	T	consensus_score=160.6	frequency=1	major_base=T	major_cov=32/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/28
RA	6217	.	1	1004216	0	G	A	consensus_score=164.0	frequency=1	major_base=A	major_cov=32/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/29
RA	6218	.	1	1005974	0	A	G	bias_e_value=1527110	bias_p_value=0.724044	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=8.1	deleted=1	fisher_strand_p_value=0.356347	frequency=3.500e-01	ks_quality_p_value=1	major_base=A	major_cov=9/4	major_frequency=6.500e-01	minor_base=G	minor_cov=3/4	new_cov=3/4	polymorphism_frequency=3.500e-01	polymorphism_score=10.3	prediction=polymorphism	ref_cov=9/4	total_cov=12/8
RA	6219	.	1	1005989	0	A	G	bias_e_value=1978440	bias_p_value=0.938028	consensus_reject=FREQUENCY_CUTOFF	consensus_score=15.2	fisher_strand_p_value=0.695609	frequency=3.667e-01	ks_quality_p_value=0.962139	major_base=A	major_cov=13/6	major_frequency=6.333e-01	minor_base=G	minor_cov=6/5	new_cov=6/5	polymorphism_frequency=3.667e-01	polymorphism_score=19.2	prediction=polymorphism	ref_cov=13/6	total_cov=19/11
RA	6220	.	1	1005998	0	G	C	bias_e_value=1357360	bias_p_value=0.643561	consensus_reject=FREQUENCY_CUTOFF	consensus_score=33.8	fisher_strand_p_value=0.303492	frequency=3.784e-01	ks_quality_p_value=0.941199	major_base=G	major_cov=16/7	major_frequency=6.216e-01	minor_base=C	minor_cov=7/7	new_cov=7/7	polymorphism_frequency=3.784e-01	polymorphism_score=39.7	prediction=polymorphism	ref_cov=16/7	total_cov=23/14
RA	6221	.	1	1006004	0	A	T	bias_e_value=2034510	bias_p_value=0.964616	consensus_reject=FREQUENCY_CUTOFF	consensus_score=42.6	fisher_strand_p_value=0.746053	frequency=3.902e-01	ks_quality_p_value=1	major_base=A	major_cov=16/9	major_frequency=6.098e-01	minor_base=T	minor_cov=9/7	new_cov=9/7	polymorphism_frequency=3.902e-01	polymorphism_score=44.4	prediction=polymorphism	ref_cov=16/9	total_cov=25/16
RA	6222	.	1	1006007	0	A	T	bias_e_value=1969100	bias_p_value=0.933603	consensus_reject=FREQUENCY_CUTOFF	consensus_score=38.3	fisher_strand_p_value=0.746053	frequency=3.902e-01	ks_quality_p_value=0.882605	major_base=A	major_cov=16/9	major_frequency=6.098e-01	minor_base=T	minor_cov=9/7	new_cov=9/7	polymorphism_frequency=3.902e-01	polymorphism_score=46.9	prediction=polymorphism	ref_cov=16/9	total_cov=25/16
RA	6223	.	1	1006013	0	A	C	bias_e_value=1851650	bias_p_value=0.877917	consensus_reject=FREQUENCY_CUTOFF	consensus_score=25.4	fisher_strand_p_value=0.566074	frequency=4.255e-01	ks_quality_p_value=0.968971	major_base=A	major_cov=16/11	major_frequency=5.745e-01	minor_base=C	minor_cov=10/10	new_cov=10/10	polymorphism_frequency=4.255e-01	polymorphism_score=51.4	prediction=polymorphism	ref_cov=16/11	total_cov=26/21
RA	6224	.	1	1006016	0	G	A	bias_e_value=2048710	bias_p_value=0.971345	consensus_reject=FREQUENCY_CUTOFF	consensus_score=28.2	fisher_strand_p_value=0.770362	frequency=4.167e-01	ks_quality_p_value=1	major_base=G	major_cov=16/12	major_frequency=5.833e-01	minor_base=A	minor_cov=10/10	new_cov=10/10	polymorphism_frequency=4.167e-01	polymorphism_score=34.4	prediction=polymorphism	ref_cov=16/12	total_cov=26/22
RA	6225	.	1	1006022	0	G	A	bias_e_value=2055340	bias_p_value=0.97449	consensus_reject=FREQUENCY_CUTOFF	consensus_score=30.3	fisher_strand_p_value=0.782797	frequency=4.118e-01	ks_quality_p_value=1	major_base=G	major_cov=17/13	major_frequency=5.882e-01	minor_base=A	minor_cov=11/10	new_cov=11/10	polymorphism_frequency=4.118e-01	polymorphism_score=37.2	prediction=polymorphism	ref_cov=17/13	total_cov=28/23
RA	6226	.	1	1006026	0	G	T	bias_e_value=2055340	bias_p_value=0.97449	consensus_reject=FREQUENCY_CUTOFF	consensus_score=28.6	fisher_strand_p_value=0.782797	frequency=5.882e-01	ks_quality_p_value=1	major_base=T	major_cov=17/13	major_frequency=5.882e-01	minor_base=G	minor_cov=11/10	new_cov=17/13	polymorphism_frequency=5.882e-01	polymorphism_score=57.5	prediction=polymorphism	ref_cov=11/10	total_cov=28/23
RA	6227	.	1	1006046	0	G	A	bias_e_value=45994.9	bias_p_value=0.0218074	consensus_reject=FREQUENCY_CUTOFF	consensus_score=29.9	fisher_strand_p_value=0.803595	frequency=4.242e-01	ks_quality_p_value=0.00403082	major_base=G	major_cov=20/18	major_frequency=5.758e-01	minor_base=A	minor_cov=13/15	new_cov=13/15	polymorphism_frequency=4.242e-01	polymorphism_score=54.5	prediction=polymorphism	ref_cov=20/18	total_cov=33/33
RA	6228	.	1	1006049	0	T	C	bias_e_value=2059250	bias_p_value=0.976343	consensus_reject=FREQUENCY_CUTOFF	consensus_score=27.2	fisher_strand_p_value=0.803595	frequency=4.242e-01	ks_quality_p_value=0.983729	major_base=T	major_cov=20/18	major_frequency=5.758e-01	minor_base=C	minor_cov=13/15	new_cov=13/15	polymorphism_frequency=4.242e-01	polymorphism_score=56.1	prediction=polymorphism	ref_cov=20/18	total_cov=33/33
RA	6229	.	1	1006054	0	T	C	bias_e_value=1939540	bias_p_value=0.919585	consensus_reject=FREQUENCY_CUTOFF	consensus_score=22.0	fisher_strand_p_value=0.640324	frequency=4.384e-01	ks_quality_p_value=0.978844	major_base=T	major_cov=22/19	major_frequency=5.616e-01	minor_base=C	minor_cov=15/17	new_cov=15/17	polymorphism_frequency=4.384e-01	polymorphism_score=67.5	prediction=polymorphism	ref_cov=22/19	total_cov=37/36
RA	6230	.	1	1006071	0	G	T	bias_e_value=1310750	bias_p_value=0.621461	consensus_reject=FREQUENCY_CUTOFF	consensus_score=40.3	fisher_strand_p_value=0.382831	frequency=4.699e-01	ks_quality_p_value=0.701173	major_base=G	major_cov=25/19	major_frequency=5.301e-01	minor_base=T	minor_cov=18/21	new_cov=18/21	polymorphism_frequency=4.699e-01	polymorphism_score=103.1	prediction=polymorphism	ref_cov=25/19	total_cov=43/40
RA	6231	.	1	1006084	0	T	C	bias_e_value=1817070	bias_p_value=0.861521	consensus_reject=FREQUENCY_CUTOFF	consensus_score=14.6	fisher_strand_p_value=0.522269	frequency=4.773e-01	ks_quality_p_value=1	major_base=T	major_cov=25/21	major_frequency=5.227e-01	minor_base=C	minor_cov=19/23	new_cov=19/23	polymorphism_frequency=4.773e-01	polymorphism_score=89.4	prediction=polymorphism	ref_cov=25/21	total_cov=44/44
RA	6232	.	1	1006087	0	A	T	bias_e_value=1817070	bias_p_value=0.861521	consensus_reject=FREQUENCY_CUTOFF	consensus_score=47.3	fisher_strand_p_value=0.522269	frequency=4.773e-01	ks_quality_p_value=1	major_base=A	major_cov=25/21	major_frequency=5.227e-01	minor_base=T	minor_cov=19/23	new_cov=19/23	polymorphism_frequency=4.773e-01	polymorphism_score=128.2	prediction=polymorphism	ref_cov=25/21	total_cov=44/44
RA	6233	.	1	1006100	0	A	G	bias_e_value=1363420	bias_p_value=0.646433	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=4.7	fisher_strand_p_value=0.536173	frequency=4.894e-01	ks_quality_p_value=0.537039	major_base=A	major_cov=26/22	major_frequency=5.106e-01	minor_base=G	minor_cov=21/25	new_cov=21/25	polymorphism_frequency=4.894e-01	polymorphism_score=98.9	prediction=polymorphism	ref_cov=26/22	total_cov=47/47
RA	6234	.	1	1006135	0	T	C	bias_e_value=1998790	bias_p_value=0.947681	consensus_reject=FREQUENCY_CUTOFF	consensus_score=17.1	fisher_strand_p_value=0.694477	frequency=4.808e-01	ks_quality_p_value=1	major_base=T	major_cov=30/24	major_frequency=5.192e-01	minor_base=C	minor_cov=25/25	new_cov=25/25	polymorphism_frequency=4.808e-01	polymorphism_score=109.7	prediction=polymorphism	ref_cov=30/24	total_cov=55/49
RA	6235	.	1	1006140	0	C	T	bias_e_value=1981840	bias_p_value=0.939644	consensus_reject=FREQUENCY_CUTOFF	consensus_score=26.4	fisher_strand_p_value=0.695198	frequency=4.757e-01	ks_quality_p_value=0.968539	major_base=C	major_cov=30/24	major_frequency=5.243e-01	minor_base=T	minor_cov=25/24	new_cov=25/24	polymorphism_frequency=4.757e-01	polymorphism_score=97.8	prediction=polymorphism	ref_cov=30/24	total_cov=55/48
RA	6236	.	1	1006143	0	C	T	bias_e_value=231391	bias_p_value=0.109709	consensus_reject=FREQUENCY_CUTOFF	consensus_score=26.9	fisher_strand_p_value=0.842573	frequency=4.706e-01	ks_quality_p_value=0.0272806	major_base=C	major_cov=30/24	major_frequency=5.294e-01	minor_base=T	minor_cov=25/23	new_cov=25/23	polymorphism_frequency=4.706e-01	polymorphism_score=98.7	prediction=polymorphism	ref_cov=30/24	total_cov=55/48
RA	6237	.	1	1006144	0	C	T	bias_e_value=100227	bias_p_value=0.04752	consensus_reject=FREQUENCY_CUTOFF	consensus_score=24.1	fisher_strand_p_value=0.695198	frequency=4.757e-01	ks_quality_p_value=0.0117743	major_base=C	major_cov=30/24	major_frequency=5.243e-01	minor_base=T	minor_cov=25/24	new_cov=25/24	polymorphism_frequency=4.757e-01	polymorphism_score=100.4	prediction=polymorphism	ref_cov=30/24	total_cov=55/48
RA	6238	.	1	1006148	1	.	T	bias_e_value=1.79992e-06	bias_p_value=8.53387e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=65.8	fisher_strand_p_value=0.695198	frequency=4.757e-01	ks_quality_p_value=3.80475e-14	major_base=.	major_cov=30/24	major_frequency=5.243e-01	minor_base=T	minor_cov=25/24	new_cov=25/24	polymorphism_frequency=4.757e-01	polymorphism_score=208.8	prediction=polymorphism	ref_cov=30/24	total_cov=55/48
RA	6239	.	1	1006149	0	C	A	bias_e_value=3.85305e-05	bias_p_value=1.82683e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=38.9	fisher_strand_p_value=0.695198	frequency=4.757e-01	ks_quality_p_value=9.03129e-13	major_base=C	major_cov=30/24	major_frequency=5.243e-01	minor_base=A	minor_cov=25/24	new_cov=25/24	polymorphism_frequency=4.757e-01	polymorphism_score=132.0	prediction=polymorphism	ref_cov=30/24	total_cov=55/48
RA	6240	.	1	1006150	0	G	T	bias_e_value=42.6558	bias_p_value=2.02242e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=41.6	fisher_strand_p_value=0.695198	frequency=4.757e-01	ks_quality_p_value=2.00886e-06	major_base=G	major_cov=30/24	major_frequency=5.243e-01	minor_base=T	minor_cov=25/24	new_cov=25/24	polymorphism_frequency=4.757e-01	polymorphism_score=129.2	prediction=polymorphism	ref_cov=30/24	total_cov=55/48
RA	6241	.	1	1006153	0	G	A	bias_e_value=87666.5	bias_p_value=0.041565	consensus_reject=FREQUENCY_CUTOFF	consensus_score=25.4	fisher_strand_p_value=0.695198	frequency=4.757e-01	ks_quality_p_value=0.0100204	major_base=G	major_cov=30/24	major_frequency=5.243e-01	minor_base=A	minor_cov=25/24	new_cov=25/24	polymorphism_frequency=4.757e-01	polymorphism_score=99.0	prediction=polymorphism	ref_cov=30/24	total_cov=55/48
RA	6242	.	1	1006163	1	.	T	bias_e_value=1692520	bias_p_value=0.802467	consensus_reject=FREQUENCY_CUTOFF	consensus_score=50.3	fisher_strand_p_value=0.441508	frequency=5.000e-01	ks_quality_p_value=1	major_base=.	major_cov=30/24	major_frequency=5.000e-01	minor_base=T	minor_cov=25/29	new_cov=25/29	polymorphism_frequency=5.000e-01	polymorphism_score=232.6	prediction=polymorphism	ref_cov=30/24	total_cov=55/53
RA	6243	.	1	1006163	2	.	C	bias_e_value=1692520	bias_p_value=0.802467	consensus_reject=FREQUENCY_CUTOFF	consensus_score=54.2	fisher_strand_p_value=0.441508	frequency=5.000e-01	ks_quality_p_value=1	major_base=.	major_cov=30/24	major_frequency=5.000e-01	minor_base=C	minor_cov=25/29	new_cov=25/29	polymorphism_frequency=5.000e-01	polymorphism_score=261.4	prediction=polymorphism	ref_cov=30/24	total_cov=55/53
RA	6244	.	1	1006252	0	T	.	bias_e_value=28910.4	bias_p_value=0.0137072	consensus_reject=FREQUENCY_CUTOFF	consensus_score=20.6	fisher_strand_p_value=0.277233	frequency=6.047e-01	ks_quality_p_value=0.00679705	major_base=.	major_cov=24/28	major_frequency=6.047e-01	minor_base=T	minor_cov=20/14	new_cov=24/28	polymorphism_frequency=6.047e-01	polymorphism_score=141.6	prediction=polymorphism	ref_cov=20/14	total_cov=44/42
RA	6245	.	1	1006253	0	C	.	bias_e_value=606595	bias_p_value=0.287603	consensus_reject=FREQUENCY_CUTOFF	consensus_score=12.9	fisher_strand_p_value=0.277233	frequency=6.047e-01	ks_quality_p_value=0.296527	major_base=.	major_cov=24/28	major_frequency=6.047e-01	minor_base=C	minor_cov=20/14	new_cov=24/28	polymorphism_frequency=6.047e-01	polymorphism_score=156.6	prediction=polymorphism	ref_cov=20/14	total_cov=44/42
RA	6246	.	1	1007331	0	G	A	consensus_score=146.5	frequency=1	major_base=A	major_cov=23/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/31
RA	6247	.	1	1009963	0	G	A	consensus_score=199.1	frequency=1	major_base=A	major_cov=33/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/42
RA	6248	.	1	1010615	0	G	A	consensus_score=179.0	frequency=1	major_base=A	major_cov=39/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/27
RA	6249	.	1	1012667	0	C	A	consensus_score=258.7	frequency=1	major_base=A	major_cov=48/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/46
RA	6250	.	1	1013316	0	G	A	bias_e_value=2093590	bias_p_value=0.992624	consensus_score=202.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.881027	major_base=A	major_cov=32/43	major_frequency=9.868e-01	minor_base=.	minor_cov=0/1	new_cov=32/43	polymorphism_frequency=9.868e-01	polymorphism_score=-3.4	prediction=consensus	ref_cov=0/0	total_cov=32/44
RA	6251	.	1	1015201	0	G	A	consensus_score=272.1	frequency=1	major_base=A	major_cov=50/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/46
RA	6252	.	1	1015579	0	A	G	consensus_score=120.7	frequency=1	major_base=G	major_cov=24/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/19
RA	6253	.	1	1016171	0	G	T	consensus_score=215.0	frequency=1	major_base=T	major_cov=46/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/33
RA	6254	.	1	1016238	0	G	T	consensus_score=263.4	frequency=1	major_base=T	major_cov=55/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/43
RA	6255	.	1	1018917	0	T	C	bias_e_value=1687060	bias_p_value=0.799879	consensus_score=174.7	fisher_strand_p_value=0.438356	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=31/41	major_frequency=9.863e-01	minor_base=G	minor_cov=1/0	new_cov=31/41	polymorphism_frequency=9.863e-01	polymorphism_score=-6.0	prediction=consensus	ref_cov=0/0	total_cov=32/41
RA	6256	.	1	1019166	0	G	A	consensus_score=151.8	frequency=1	major_base=A	major_cov=28/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/27
RA	6257	.	1	1019169	0	G	.	bias_e_value=2109140	bias_p_value=1	consensus_score=217.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999301	major_base=.	major_cov=27/26	major_frequency=9.815e-01	minor_base=A	minor_cov=0/1	new_cov=27/26	polymorphism_frequency=9.815e-01	polymorphism_score=-2.8	prediction=consensus	ref_cov=1/0	total_cov=28/27
RA	6258	.	1	1020321	0	A	G	consensus_score=205.6	frequency=1	major_base=G	major_cov=35/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/37
RA	6259	.	1	1020427	0	G	A	consensus_score=202.6	frequency=1	major_base=A	major_cov=32/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/44
RA	6260	.	1	1020617	0	C	T	consensus_score=214.1	frequency=1	major_base=T	major_cov=35/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/41
RA	6261	.	1	1022826	0	T	C	consensus_score=179.9	frequency=1	major_base=C	major_cov=38/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/25
RA	6262	.	1	1024260	0	T	G	bias_e_value=2109140	bias_p_value=1	consensus_score=200.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=38/34	major_frequency=9.863e-01	minor_base=T	minor_cov=1/0	new_cov=38/34	polymorphism_frequency=9.863e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=39/34
RA	6263	.	1	1025786	0	A	C	bias_e_value=2.16876e-08	bias_p_value=1.02827e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=97.3	fisher_strand_p_value=2.79313e-16	frequency=4.267e-01	ks_quality_p_value=1	major_base=A	major_cov=38/5	major_frequency=5.733e-01	minor_base=C	minor_cov=0/32	new_cov=0/32	polymorphism_frequency=4.267e-01	polymorphism_score=11.6	prediction=polymorphism	ref_cov=38/5	total_cov=38/37
RA	6264	.	1	1027483	0	G	T	consensus_score=270.2	frequency=1	major_base=T	major_cov=50/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/49
RA	6265	.	1	1028007	0	T	C	consensus_score=242.7	frequency=1	major_base=C	major_cov=44/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/43
RA	6266	.	1	1028310	0	T	C	consensus_score=129.7	frequency=1	major_base=C	major_cov=23/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/25
RA	6267	.	1	1029085	0	C	T	consensus_score=182.4	frequency=1	major_base=T	major_cov=39/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/29
RA	6268	.	1	1029573	1	.	T	consensus_score=220.4	frequency=1	major_base=T	major_cov=23/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/53
RA	6269	.	1	1030847	0	G	A	consensus_score=94.1	frequency=1	major_base=A	major_cov=16/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/20
RA	6270	.	1	1033202	0	T	C	consensus_score=282.6	frequency=1	major_base=C	major_cov=44/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/53
RA	6271	.	1	1034982	0	A	G	consensus_score=55.3	frequency=1	major_base=G	major_cov=12/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/13
RA	6272	.	1	1034983	0	C	T	consensus_score=53.9	frequency=1	major_base=T	major_cov=12/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/13
RA	6273	.	1	1034984	0	T	A	consensus_score=54.4	frequency=1	major_base=A	major_cov=12/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/13
RA	6274	.	1	1034992	0	A	G	bias_e_value=2109130	bias_p_value=0.999995	consensus_score=54.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.996928	major_base=G	major_cov=12/13	major_frequency=9.615e-01	minor_base=A	minor_cov=1/0	new_cov=12/13	polymorphism_frequency=9.615e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=1/0	total_cov=13/13
RA	6275	.	1	1034993	1	.	T	bias_e_value=2109140	bias_p_value=1	consensus_score=53.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=12/13	major_frequency=9.615e-01	minor_base=.	minor_cov=1/0	new_cov=12/13	polymorphism_frequency=9.615e-01	polymorphism_score=-2.8	prediction=consensus	ref_cov=1/0	total_cov=13/13
RA	6276	.	1	1034996	0	T	G	bias_e_value=1909440	bias_p_value=0.905317	consensus_score=50.5	fisher_strand_p_value=0.597701	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=12/13	major_frequency=8.621e-01	minor_base=T	minor_cov=3/1	new_cov=12/13	polymorphism_frequency=8.621e-01	polymorphism_score=4.0	prediction=consensus	ref_cov=3/1	total_cov=15/14
RA	6277	.	1	1034997	0	T	G	bias_e_value=1909440	bias_p_value=0.905317	consensus_score=50.3	fisher_strand_p_value=0.597701	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=12/13	major_frequency=8.621e-01	minor_base=T	minor_cov=3/1	new_cov=12/13	polymorphism_frequency=8.621e-01	polymorphism_score=4.6	prediction=consensus	ref_cov=3/1	total_cov=15/14
RA	6278	.	1	1034999	0	G	.	bias_e_value=1909440	bias_p_value=0.905317	consensus_score=54.7	fisher_strand_p_value=0.597701	frequency=1	ks_quality_p_value=1	major_base=.	major_cov=12/13	major_frequency=8.621e-01	minor_base=G	minor_cov=3/1	new_cov=12/13	polymorphism_frequency=8.621e-01	polymorphism_score=11.7	prediction=consensus	ref_cov=3/1	total_cov=15/14
RA	6279	.	1	1035004	0	T	A	bias_e_value=1909440	bias_p_value=0.905317	consensus_score=52.6	fisher_strand_p_value=0.597701	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=12/13	major_frequency=8.621e-01	minor_base=T	minor_cov=3/1	new_cov=12/13	polymorphism_frequency=8.621e-01	polymorphism_score=5.8	prediction=consensus	ref_cov=3/1	total_cov=15/14
RA	6280	.	1	1035005	0	A	G	bias_e_value=1508890	bias_p_value=0.715405	consensus_score=44.3	fisher_strand_p_value=0.597701	frequency=1	ks_quality_p_value=0.582346	major_base=G	major_cov=12/13	major_frequency=8.621e-01	minor_base=A	minor_cov=3/1	new_cov=12/13	polymorphism_frequency=8.621e-01	polymorphism_score=1.9	prediction=consensus	ref_cov=3/1	total_cov=15/14
RA	6281	.	1	1040937	0	A	G	consensus_score=217.1	frequency=1	major_base=G	major_cov=35/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/40
RA	6282	.	1	1041066	0	T	C	consensus_score=204.9	frequency=1	major_base=C	major_cov=36/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/35
RA	6283	.	1	1041575	0	C	A	consensus_score=238.7	frequency=1	major_base=A	major_cov=41/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/43
RA	6284	.	1	1041999	0	T	C	consensus_score=297.2	frequency=1	major_base=C	major_cov=55/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/48
RA	6285	.	1	1042169	0	G	A	consensus_score=283.8	frequency=1	major_base=A	major_cov=44/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/55
RA	6286	.	1	1045282	0	A	G	consensus_score=378.8	frequency=1	major_base=G	major_cov=89/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=89/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=89/42
RA	6287	.	1	1047106	0	G	A	bias_e_value=0.0295179	bias_p_value=1.39952e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=155.9	fisher_strand_p_value=6.30873e-10	frequency=2.421e-01	ks_quality_p_value=1	major_base=G	major_cov=50/22	major_frequency=7.579e-01	minor_base=A	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=2.421e-01	polymorphism_score=13.5	prediction=polymorphism	ref_cov=50/22	total_cov=50/45
RA	6288	.	1	1048574	0	T	C	consensus_score=253.1	frequency=1	major_base=C	major_cov=36/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/51
RA	6289	.	1	1049282	0	G	A	consensus_score=327.0	frequency=1	major_base=A	major_cov=67/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=67/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/46
RA	6290	.	1	1050633	0	T	C	consensus_score=316.4	frequency=1	major_base=C	major_cov=54/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/59
RA	6291	.	1	1051118	1	.	A	consensus_score=232.7	frequency=1	major_base=A	major_cov=41/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/42
RA	6292	.	1	1053609	0	C	T	consensus_score=263.5	frequency=1	major_base=T	major_cov=55/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/41
RA	6293	.	1	1053650	0	A	G	consensus_score=293.7	frequency=1	major_base=G	major_cov=55/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/51
RA	6294	.	1	1053730	0	A	G	consensus_score=292.6	frequency=1	major_base=G	major_cov=50/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/53
RA	6295	.	1	1053819	0	T	G	consensus_score=273.0	frequency=1	major_base=G	major_cov=41/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/57
RA	6296	.	1	1054118	0	G	A	consensus_score=256.1	frequency=1	major_base=A	major_cov=38/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/53
RA	6297	.	1	1054987	0	G	A	consensus_score=217.4	frequency=1	major_base=A	major_cov=45/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/34
RA	6298	.	1	1055588	0	A	G	bias_e_value=2109140	bias_p_value=1	consensus_score=398.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999589	major_base=G	major_cov=74/65	major_frequency=9.929e-01	minor_base=A	minor_cov=1/0	new_cov=74/65	polymorphism_frequency=9.929e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=75/65
RA	6299	.	1	1055664	0	A	C	consensus_score=376.7	frequency=1	major_base=C	major_cov=62/68	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/68	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/68
RA	6300	.	1	1057055	0	G	A	bias_e_value=1580180	bias_p_value=0.749206	consensus_score=202.0	fisher_strand_p_value=0.381579	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=47/28	major_frequency=9.868e-01	minor_base=C	minor_cov=0/1	new_cov=47/28	polymorphism_frequency=9.868e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/29
RA	6301	.	1	1058310	0	A	G	consensus_score=212.4	frequency=1	major_base=G	major_cov=43/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/35
RA	6302	.	1	1059064	0	C	A	consensus_score=219.3	frequency=1	major_base=A	major_cov=35/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/46
RA	6303	.	1	1059227	0	T	C	consensus_score=235.7	frequency=1	major_base=C	major_cov=39/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/43
RA	6304	.	1	1059944	0	A	C	consensus_score=112.7	frequency=1	major_base=C	major_cov=4/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/38
RA	6305	.	1	1060648	0	C	T	consensus_score=251.1	frequency=1	major_base=T	major_cov=53/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/48
RA	6306	.	1	1063909	0	A	C	consensus_score=212.7	frequency=1	major_base=C	major_cov=37/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/39
RA	6307	.	1	1065749	0	T	C	consensus_score=133.5	frequency=1	major_base=C	major_cov=29/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/20
RA	6308	.	1	1065773	0	G	A	consensus_score=164.5	frequency=1	major_base=A	major_cov=29/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/29
RA	6309	.	1	1066757	0	T	C	consensus_score=289.3	frequency=1	major_base=C	major_cov=55/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/44
RA	6310	.	1	1068615	0	C	T	consensus_score=159.1	frequency=1	major_base=T	major_cov=28/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/31
RA	6311	.	1	1071599	0	C	T	consensus_score=230.5	frequency=1	major_base=T	major_cov=42/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/45
RA	6312	.	1	1073429	0	T	G	bias_e_value=0.0472476	bias_p_value=2.24013e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=75.4	fisher_strand_p_value=1.03275e-09	frequency=4.328e-01	ks_quality_p_value=1	major_base=T	major_cov=12/26	major_frequency=5.672e-01	minor_base=G	minor_cov=29/0	new_cov=29/0	polymorphism_frequency=4.328e-01	polymorphism_score=14.9	prediction=polymorphism	ref_cov=12/26	total_cov=42/26
RA	6313	.	1	1073517	0	G	A	consensus_score=168.5	frequency=1	major_base=A	major_cov=34/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/29
RA	6314	.	1	1073888	0	G	A	bias_e_value=2109130	bias_p_value=0.999993	consensus_score=249.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.996185	major_base=A	major_cov=52/39	major_frequency=9.891e-01	minor_base=G	minor_cov=1/0	new_cov=52/39	polymorphism_frequency=9.891e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=54/39
RA	6315	.	1	1075172	0	A	C	consensus_score=156.7	frequency=1	major_base=C	major_cov=31/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/24
RA	6316	.	1	1075837	0	A	C	consensus_score=207.5	frequency=1	major_base=C	major_cov=43/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/34
RA	6317	.	1	1076642	0	T	C	consensus_score=221.6	frequency=1	major_base=C	major_cov=35/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/44
RA	6318	.	1	1077590	0	T	C	consensus_score=164.3	frequency=1	major_base=C	major_cov=30/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/28
RA	6319	.	1	1078553	0	T	C	consensus_score=262.2	frequency=1	major_base=C	major_cov=35/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/59
RA	6320	.	1	1078639	0	C	T	bias_e_value=2037010	bias_p_value=0.965798	consensus_score=298.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.750128	major_base=T	major_cov=43/62	major_frequency=9.906e-01	minor_base=C	minor_cov=0/1	new_cov=43/62	polymorphism_frequency=9.906e-01	polymorphism_score=-5.4	prediction=consensus	ref_cov=0/1	total_cov=43/63
RA	6321	.	1	1079125	0	T	C	consensus_score=233.0	frequency=1	major_base=C	major_cov=41/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/40
RA	6322	.	1	1079679	0	C	T	bias_e_value=2109140	bias_p_value=1	consensus_score=203.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=32/43	major_frequency=9.868e-01	minor_base=C	minor_cov=0/1	new_cov=32/43	polymorphism_frequency=9.868e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=32/44
RA	6323	.	1	1079730	0	C	A	consensus_score=168.8	frequency=1	major_base=A	major_cov=25/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/38
RA	6324	.	1	1080207	0	T	C	consensus_score=229.0	frequency=1	major_base=C	major_cov=47/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/35
RA	6325	.	1	1080433	0	T	C	consensus_score=171.6	frequency=1	major_base=C	major_cov=25/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/37
RA	6326	.	1	1082049	0	A	G	consensus_score=187.2	frequency=1	major_base=G	major_cov=29/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/37
RA	6327	.	1	1084046	0	T	A	bias_e_value=0.0534718	bias_p_value=2.53524e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=96.7	fisher_strand_p_value=1.17583e-09	frequency=2.549e-01	ks_quality_p_value=1	major_base=T	major_cov=3/35	major_frequency=7.451e-01	minor_base=A	minor_cov=13/0	new_cov=13/0	polymorphism_frequency=2.549e-01	polymorphism_score=11.0	prediction=polymorphism	ref_cov=3/35	total_cov=16/35
RA	6328	.	1	1086760	0	T	C	consensus_score=155.7	frequency=1	major_base=C	major_cov=25/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/32
RA	6329	.	1	1086922	0	A	G	consensus_score=141.9	frequency=1	major_base=G	major_cov=19/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/34
RA	6330	.	1	1089761	0	G	A	consensus_score=194.2	frequency=1	major_base=A	major_cov=32/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/40
RA	6331	.	1	1091131	0	T	C	consensus_score=175.4	frequency=1	major_base=C	major_cov=30/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/31
RA	6332	.	1	1091709	0	A	G	consensus_score=232.3	frequency=1	major_base=G	major_cov=38/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/44
RA	6333	.	1	1092214	0	T	C	consensus_score=207.1	frequency=1	major_base=C	major_cov=30/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/46
RA	6334	.	1	1092331	0	G	C	consensus_score=199.0	frequency=1	major_base=C	major_cov=38/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/31
RA	6335	.	1	1092521	0	G	A	bias_e_value=0.00099933	bias_p_value=4.73808e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=74.6	fisher_strand_p_value=1.84237e-11	frequency=3.521e-01	ks_quality_p_value=1	major_base=G	major_cov=10/36	major_frequency=6.479e-01	minor_base=A	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=3.521e-01	polymorphism_score=20.6	prediction=polymorphism	ref_cov=10/36	total_cov=35/36
RA	6336	.	1	1093886	0	C	G	bias_e_value=1608590	bias_p_value=0.762677	consensus_score=126.4	fisher_strand_p_value=0.395833	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=18/29	major_frequency=9.792e-01	minor_base=C	minor_cov=1/0	new_cov=18/29	polymorphism_frequency=9.792e-01	polymorphism_score=-6.2	prediction=consensus	ref_cov=1/0	total_cov=19/29
RA	6337	.	1	1094515	0	G	A	consensus_score=216.8	frequency=1	major_base=A	major_cov=44/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/36
RA	6338	.	1	1094993	0	A	T	consensus_score=181.0	frequency=1	major_base=T	major_cov=31/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/36
RA	6339	.	1	1096631	0	C	T	consensus_score=269.8	frequency=1	major_base=T	major_cov=53/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/46
RA	6340	.	1	1096712	0	T	C	consensus_score=310.3	frequency=1	major_base=C	major_cov=52/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/54
RA	6341	.	1	1097221	0	G	A	consensus_score=197.9	frequency=1	major_base=A	major_cov=40/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/34
RA	6342	.	1	1097720	0	A	C	consensus_score=275.5	frequency=1	major_base=C	major_cov=48/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/50
RA	6343	.	1	1097797	0	T	C	bias_e_value=1742780	bias_p_value=0.826299	consensus_score=223.7	fisher_strand_p_value=0.47191	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=47/41	major_frequency=9.888e-01	minor_base=T	minor_cov=0/1	new_cov=47/41	polymorphism_frequency=9.888e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=47/42
RA	6344	.	1	1098855	0	T	C	consensus_score=175.7	frequency=1	major_base=C	major_cov=29/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/32
RA	6345	.	1	1101438	0	T	G	consensus_score=14.7	frequency=1	major_base=G	major_cov=2/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=2/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=2/5
RA	6346	.	1	1102421	0	A	G	consensus_score=192.7	frequency=1	major_base=G	major_cov=40/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/28
RA	6347	.	1	1104183	0	A	G	consensus_score=55.6	frequency=1	major_base=G	major_cov=7/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/15
RA	6348	.	1	1104186	0	T	C	consensus_score=54.4	frequency=1	major_base=C	major_cov=7/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/15
RA	6349	.	1	1104210	0	T	C	consensus_score=68.6	frequency=1	major_base=C	major_cov=10/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/16
RA	6350	.	1	1104233	0	G	A	consensus_score=75.6	frequency=1	major_base=A	major_cov=14/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/17
RA	6351	.	1	1104237	0	T	C	consensus_score=83.8	frequency=1	major_base=C	major_cov=14/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/17
RA	6352	.	1	1104239	0	T	A	consensus_score=79.7	frequency=1	major_base=A	major_cov=14/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/17
RA	6353	.	1	1104709	0	G	A	consensus_score=156.1	frequency=1	major_base=A	major_cov=34/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/25
RA	6354	.	1	1105703	0	C	T	consensus_score=150.1	frequency=1	major_base=T	major_cov=25/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/31
RA	6355	.	1	1106604	0	T	C	consensus_score=272.4	frequency=1	major_base=C	major_cov=35/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/61
RA	6356	.	1	1107152	0	A	C	consensus_score=186.1	frequency=1	major_base=C	major_cov=32/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/33
RA	6357	.	1	1107268	0	G	A	consensus_score=134.7	frequency=1	major_base=A	major_cov=29/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/22
RA	6358	.	1	1107417	0	T	A	bias_e_value=796.475	bias_p_value=0.00037763	consensus_reject=FREQUENCY_CUTOFF	consensus_score=72.1	fisher_strand_p_value=3.33978e-05	frequency=3.023e-01	ks_quality_p_value=1	major_base=T	major_cov=10/20	major_frequency=6.977e-01	minor_base=A	minor_cov=13/0	new_cov=13/0	polymorphism_frequency=3.023e-01	polymorphism_score=10.2	prediction=polymorphism	ref_cov=10/20	total_cov=24/20
RA	6359	.	1	1107907	0	G	A	consensus_score=132.8	frequency=1	major_base=A	major_cov=24/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/26
RA	6360	.	1	1108203	0	A	G	consensus_score=146.4	frequency=1	major_base=G	major_cov=25/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/26
RA	6361	.	1	1109367	0	C	T	consensus_score=32.4	frequency=1	major_base=T	major_cov=4/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/10
RA	6362	.	1	1111341	0	C	A	consensus_score=109.3	frequency=1	major_base=A	major_cov=18/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/24
RA	6363	.	1	1111950	0	G	A	consensus_score=55.1	frequency=1	major_base=A	major_cov=14/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/8
RA	6364	.	1	1113330	0	G	T	consensus_score=236.4	frequency=1	major_base=T	major_cov=37/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/50
RA	6365	.	1	1114989	0	A	G	consensus_score=217.0	frequency=1	major_base=G	major_cov=37/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/43
RA	6366	.	1	1116434	0	G	A	consensus_score=208.0	frequency=1	major_base=A	major_cov=38/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/43
RA	6367	.	1	1117113	0	G	A	consensus_score=228.5	frequency=1	major_base=A	major_cov=44/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/40
RA	6368	.	1	1120832	0	C	T	consensus_score=234.0	frequency=1	major_base=T	major_cov=35/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/52
RA	6369	.	1	1121122	0	T	C	consensus_score=211.8	frequency=1	major_base=C	major_cov=37/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/36
RA	6370	.	1	1121746	0	C	A	consensus_score=200.0	frequency=1	major_base=A	major_cov=31/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/42
RA	6371	.	1	1122483	0	C	A	consensus_score=233.1	frequency=1	major_base=A	major_cov=38/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/44
RA	6372	.	1	1122770	0	C	T	consensus_score=180.0	frequency=1	major_base=T	major_cov=37/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/29
RA	6373	.	1	1124776	0	T	G	consensus_score=263.2	frequency=1	major_base=G	major_cov=43/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/50
RA	6374	.	1	1125556	0	G	A	consensus_score=212.0	frequency=1	major_base=A	major_cov=32/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/46
RA	6375	.	1	1126791	0	T	C	consensus_score=224.1	frequency=1	major_base=C	major_cov=39/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/43
RA	6376	.	1	1126816	0	A	G	consensus_score=247.0	frequency=1	major_base=G	major_cov=38/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/48
RA	6377	.	1	1126975	0	G	A	consensus_score=207.4	frequency=1	major_base=A	major_cov=28/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/46
RA	6378	.	1	1129460	0	A	G	bias_e_value=2109140	bias_p_value=1	consensus_score=220.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=34/43	major_frequency=9.872e-01	minor_base=A	minor_cov=0/1	new_cov=34/43	polymorphism_frequency=9.872e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=34/44
RA	6379	.	1	1130181	0	T	G	consensus_score=161.1	frequency=1	major_base=G	major_cov=27/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/30
RA	6380	.	1	1130827	0	A	G	consensus_score=149.7	frequency=1	major_base=G	major_cov=22/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/34
RA	6381	.	1	1130948	0	T	C	consensus_score=192.2	frequency=1	major_base=C	major_cov=38/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/30
RA	6382	.	1	1131005	0	A	G	consensus_score=214.5	frequency=1	major_base=G	major_cov=37/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/38
RA	6383	.	1	1137514	0	A	C	consensus_score=10.0	deleted=1	frequency=1	major_base=C	major_cov=3/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/8
RA	6384	.	1	1137688	0	C	T	consensus_score=262.7	frequency=1	major_base=T	major_cov=41/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/50
RA	6385	.	1	1138024	0	C	T	bias_e_value=2109140	bias_p_value=1	consensus_score=190.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=41/30	major_frequency=9.861e-01	minor_base=C	minor_cov=1/0	new_cov=41/30	polymorphism_frequency=9.861e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=42/30
RA	6386	.	1	1138302	0	T	C	bias_e_value=2109140	bias_p_value=0.999999	consensus_score=195.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998345	major_base=C	major_cov=41/28	major_frequency=9.857e-01	minor_base=T	minor_cov=1/0	new_cov=41/28	polymorphism_frequency=9.857e-01	polymorphism_score=-5.0	prediction=consensus	ref_cov=1/0	total_cov=42/28
RA	6387	.	1	1138600	0	T	C	consensus_score=173.4	frequency=1	major_base=C	major_cov=34/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/27
RA	6388	.	1	1138697	0	G	A	consensus_score=186.2	frequency=1	major_base=A	major_cov=35/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/31
RA	6389	.	1	1139745	0	T	G	consensus_score=149.5	frequency=1	major_base=G	major_cov=26/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/26
RA	6390	.	1	1139779	0	C	A	consensus_score=153.3	frequency=1	major_base=A	major_cov=28/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/27
RA	6391	.	1	1139860	0	A	G	consensus_score=128.1	frequency=1	major_base=G	major_cov=23/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/24
RA	6392	.	1	1141574	0	T	G	consensus_score=145.8	frequency=1	major_base=G	major_cov=23/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/30
RA	6393	.	1	1141776	0	C	T	consensus_score=81.5	frequency=1	major_base=T	major_cov=18/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/13
RA	6394	.	1	1141795	0	A	C	consensus_score=99.8	frequency=1	major_base=C	major_cov=20/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/17
RA	6395	.	1	1142119	0	C	T	consensus_score=157.3	frequency=1	major_base=T	major_cov=29/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/29
RA	6396	.	1	1143459	0	T	C	consensus_score=199.8	frequency=1	major_base=C	major_cov=41/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/33
RA	6397	.	1	1143648	0	C	T	consensus_score=212.6	frequency=1	major_base=T	major_cov=45/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/34
RA	6398	.	1	1143864	0	T	C	consensus_score=151.7	frequency=1	major_base=C	major_cov=21/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/32
RA	6399	.	1	1149442	0	G	A	consensus_score=232.2	frequency=1	major_base=A	major_cov=37/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/48
RA	6400	.	1	1150974	0	A	C	consensus_score=108.9	frequency=1	major_base=C	major_cov=18/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/23
RA	6401	.	1	1151494	0	G	A	consensus_score=107.7	frequency=1	major_base=A	major_cov=29/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/12
RA	6402	.	1	1151665	0	G	A	consensus_score=95.7	frequency=1	major_base=A	major_cov=19/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/18
RA	6403	.	1	1152167	0	A	C	consensus_score=63.3	frequency=1	major_base=C	major_cov=8/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/15
RA	6404	.	1	1152681	0	A	G	consensus_score=159.0	frequency=1	major_base=G	major_cov=28/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/30
RA	6405	.	1	1155851	0	A	C	consensus_score=148.3	frequency=1	major_base=C	major_cov=28/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/24
RA	6406	.	1	1158036	0	A	C	consensus_score=203.1	frequency=1	major_base=C	major_cov=40/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/33
RA	6407	.	1	1158128	0	A	G	consensus_score=203.8	frequency=1	major_base=G	major_cov=30/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/43
RA	6408	.	1	1160135	0	G	T	consensus_score=151.6	frequency=1	major_base=T	major_cov=29/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/27
RA	6409	.	1	1160336	0	A	G	consensus_score=216.5	frequency=1	major_base=G	major_cov=49/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/30
RA	6410	.	1	1160338	0	C	T	bias_e_value=2103510	bias_p_value=0.997329	consensus_score=187.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.927813	major_base=T	major_cov=47/30	major_frequency=9.872e-01	minor_base=C	minor_cov=1/0	new_cov=47/30	polymorphism_frequency=9.872e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=49/30
RA	6411	.	1	1160459	0	A	C	consensus_score=238.5	frequency=1	major_base=C	major_cov=37/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/46
RA	6412	.	1	1162870	0	C	T	consensus_score=224.1	frequency=1	major_base=T	major_cov=42/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/42
RA	6413	.	1	1165501	0	C	T	consensus_score=149.6	frequency=1	major_base=T	major_cov=27/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/29
RA	6414	.	1	1167554	0	G	A	consensus_score=259.9	frequency=1	major_base=A	major_cov=58/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/38
RA	6415	.	1	1168255	0	T	C	consensus_score=119.0	frequency=1	major_base=C	major_cov=42/1	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/1	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/1
RA	6416	.	1	1168301	0	G	A	consensus_score=137.5	frequency=1	major_base=A	major_cov=42/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/6
RA	6417	.	1	1169738	0	C	T	bias_e_value=2109140	bias_p_value=1	consensus_score=234.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=52/36	major_frequency=9.888e-01	minor_base=C	minor_cov=1/0	new_cov=52/36	polymorphism_frequency=9.888e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=53/36
RA	6418	.	1	1169833	0	T	C	consensus_score=266.8	frequency=1	major_base=C	major_cov=57/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/36
RA	6419	.	1	1173661	0	C	T	bias_e_value=1729420	bias_p_value=0.819962	consensus_score=166.6	fisher_strand_p_value=0.463768	frequency=1	ks_quality_p_value=0.999574	major_base=T	major_cov=37/31	major_frequency=9.855e-01	minor_base=G	minor_cov=0/1	new_cov=37/31	polymorphism_frequency=9.855e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/32
RA	6420	.	1	1175289	0	G	A	consensus_score=190.9	frequency=1	major_base=A	major_cov=25/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/44
RA	6421	.	1	1175581	0	A	C	consensus_score=27.2	frequency=1	major_base=C	major_cov=2/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=2/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=2/10
RA	6422	.	1	1175808	0	T	C	consensus_score=182.1	frequency=1	major_base=C	major_cov=38/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/29
RA	6423	.	1	1176342	0	T	C	bias_e_value=1625600	bias_p_value=0.770739	consensus_score=158.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.404638	major_base=C	major_cov=28/28	major_frequency=9.825e-01	minor_base=.	minor_cov=0/1	new_cov=28/28	polymorphism_frequency=9.825e-01	polymorphism_score=-3.1	prediction=consensus	ref_cov=0/0	total_cov=28/29
RA	6424	.	1	1176999	0	G	T	consensus_score=179.9	frequency=1	major_base=T	major_cov=36/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/31
RA	6425	.	1	1177646	0	G	A	bias_e_value=1672560	bias_p_value=0.793005	consensus_score=152.8	fisher_strand_p_value=0.444444	frequency=1	ks_quality_p_value=0.967761	major_base=A	major_cov=35/27	major_frequency=9.841e-01	minor_base=G	minor_cov=0/1	new_cov=35/27	polymorphism_frequency=9.841e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=35/28
RA	6426	.	1	1177734	0	C	A	consensus_score=181.5	frequency=1	major_base=A	major_cov=38/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/29
RA	6427	.	1	1178469	1	.	G	consensus_score=277.6	frequency=1	major_base=G	major_cov=53/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/43
RA	6428	.	1	1178769	0	G	A	consensus_score=204.0	frequency=1	major_base=A	major_cov=44/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/27
RA	6429	.	1	1178815	0	A	G	consensus_score=211.2	frequency=1	major_base=G	major_cov=44/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/30
RA	6430	.	1	1179707	0	A	G	consensus_score=155.1	frequency=1	major_base=G	major_cov=26/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/29
RA	6431	.	1	1180276	0	G	T	consensus_score=16.7	frequency=1	major_base=T	major_cov=7/1	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/1	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/1
RA	6432	.	1	1180891	0	C	T	consensus_score=193.0	frequency=1	major_base=T	major_cov=35/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/37
RA	6433	.	1	1181053	0	T	C	consensus_score=169.1	frequency=1	major_base=C	major_cov=30/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/32
RA	6434	.	1	1181533	0	G	T	bias_e_value=0.0164788	bias_p_value=7.81302e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=97.4	fisher_strand_p_value=3.48038e-10	frequency=3.281e-01	ks_quality_p_value=0.984854	major_base=G	major_cov=9/34	major_frequency=6.719e-01	minor_base=T	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=3.281e-01	polymorphism_score=17.4	prediction=polymorphism	ref_cov=9/34	total_cov=30/34
RA	6435	.	1	1181539	0	C	A	bias_e_value=0.0390112	bias_p_value=1.84962e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=112.9	fisher_strand_p_value=8.44893e-10	frequency=2.903e-01	ks_quality_p_value=1	major_base=C	major_cov=8/36	major_frequency=7.097e-01	minor_base=A	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.903e-01	polymorphism_score=14.4	prediction=polymorphism	ref_cov=8/36	total_cov=30/36
RA	6436	.	1	1181563	0	A	T	bias_e_value=3.57495	bias_p_value=1.69498e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=127.3	fisher_strand_p_value=9.8956e-08	frequency=2.353e-01	ks_quality_p_value=1	major_base=A	major_cov=14/38	major_frequency=7.647e-01	minor_base=T	minor_cov=16/0	new_cov=16/0	polymorphism_frequency=2.353e-01	polymorphism_score=10.9	prediction=polymorphism	ref_cov=14/38	total_cov=31/38
RA	6437	.	1	1181574	0	C	T	bias_e_value=42153.6	bias_p_value=0.0199861	consensus_score=144.1	fisher_strand_p_value=0.0029242	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=23/35	major_frequency=8.923e-01	minor_base=G	minor_cov=7/0	new_cov=23/35	polymorphism_frequency=8.923e-01	polymorphism_score=-2.9	prediction=consensus	ref_cov=2/0	total_cov=32/35
RA	6438	.	1	1184361	0	G	A	consensus_score=177.2	frequency=1	major_base=A	major_cov=44/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/24
RA	6439	.	1	1184455	0	G	A	consensus_score=172.7	frequency=1	major_base=A	major_cov=38/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/26
RA	6440	.	1	1185405	0	T	C	bias_e_value=2079160	bias_p_value=0.985784	consensus_score=127.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.836193	major_base=C	major_cov=27/26	major_frequency=9.815e-01	minor_base=G	minor_cov=0/1	new_cov=27/26	polymorphism_frequency=9.815e-01	polymorphism_score=-5.8	prediction=consensus	ref_cov=0/0	total_cov=27/27
RA	6441	.	1	1186156	0	A	G	consensus_score=162.7	frequency=1	major_base=G	major_cov=32/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/27
RA	6442	.	1	1186183	0	G	A	consensus_score=168.4	frequency=1	major_base=A	major_cov=33/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/29
RA	6443	.	1	1187950	0	G	A	consensus_score=180.2	frequency=1	major_base=A	major_cov=29/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/37
RA	6444	.	1	1187974	0	C	T	consensus_score=152.1	frequency=1	major_base=T	major_cov=25/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/32
RA	6445	.	1	1188025	0	G	A	consensus_score=129.9	frequency=1	major_base=A	major_cov=17/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/35
RA	6446	.	1	1188113	0	C	T	bias_e_value=294113	bias_p_value=0.139447	consensus_score=134.6	fisher_strand_p_value=0.031219	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=27/29	major_frequency=9.032e-01	minor_base=C	minor_cov=0/6	new_cov=27/29	polymorphism_frequency=9.032e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=0/6	total_cov=27/35
RA	6447	.	1	1188118	0	A	G	consensus_score=167.6	frequency=1	major_base=G	major_cov=27/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/36
RA	6448	.	1	1188134	0	A	G	consensus_score=174.6	frequency=1	major_base=G	major_cov=27/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/36
RA	6449	.	1	1189271	0	T	G	consensus_score=264.1	frequency=1	major_base=G	major_cov=50/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/41
RA	6450	.	1	1190736	0	G	A	consensus_score=62.1	frequency=1	major_base=A	major_cov=11/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/13
RA	6451	.	1	1190829	0	C	T	consensus_score=132.1	frequency=1	major_base=T	major_cov=29/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/18
RA	6452	.	1	1191463	0	G	A	consensus_score=157.1	frequency=1	major_base=A	major_cov=39/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/16
RA	6453	.	1	1191960	0	C	T	consensus_score=281.3	frequency=1	major_base=T	major_cov=49/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/51
RA	6454	.	1	1191980	0	T	C	consensus_score=283.7	frequency=1	major_base=C	major_cov=49/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/52
RA	6455	.	1	1193184	1	.	T	consensus_score=213.4	frequency=1	major_base=T	major_cov=32/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/46
RA	6456	.	1	1193537	0	C	T	consensus_score=233.2	frequency=1	major_base=T	major_cov=47/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/35
RA	6457	.	1	1193906	0	A	G	consensus_score=196.9	frequency=1	major_base=G	major_cov=32/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/37
RA	6458	.	1	1194277	0	A	T	consensus_score=167.2	frequency=1	major_base=T	major_cov=33/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/27
RA	6459	.	1	1194627	0	T	C	bias_e_value=455166	bias_p_value=0.215806	consensus_score=242.5	fisher_strand_p_value=0.0554429	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=39/44	major_frequency=9.540e-01	minor_base=.	minor_cov=4/0	new_cov=39/44	polymorphism_frequency=9.540e-01	polymorphism_score=0.5	prediction=consensus	ref_cov=0/0	total_cov=43/44
RA	6460	.	1	1195757	0	G	.	consensus_score=35.5	deleted=1	frequency=1	major_base=.	major_cov=5/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/5
RA	6461	.	1	1195758	0	T	.	consensus_score=35.5	deleted=1	frequency=1	major_base=.	major_cov=5/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/5
RA	6462	.	1	1195759	0	A	.	consensus_score=35.5	deleted=1	frequency=1	major_base=.	major_cov=5/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/5
RA	6463	.	1	1195760	0	T	.	consensus_score=35.5	deleted=1	frequency=1	major_base=.	major_cov=5/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/5
RA	6464	.	1	1197682	0	T	C	consensus_score=97.8	frequency=1	major_base=C	major_cov=23/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/14
RA	6465	.	1	1197698	0	G	C	consensus_score=123.0	frequency=1	major_base=C	major_cov=28/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/16
RA	6466	.	1	1197736	0	A	C	consensus_score=153.5	frequency=1	major_base=C	major_cov=35/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/21
RA	6467	.	1	1197745	0	A	G	consensus_score=170.7	frequency=1	major_base=G	major_cov=36/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/24
RA	6468	.	1	1197847	0	C	A	consensus_score=206.6	frequency=1	major_base=A	major_cov=45/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/31
RA	6469	.	1	1197929	0	C	T	bias_e_value=1738370	bias_p_value=0.824207	consensus_score=219.2	fisher_strand_p_value=0.469136	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=43/37	major_frequency=9.877e-01	minor_base=A	minor_cov=0/1	new_cov=43/37	polymorphism_frequency=9.877e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/38
RA	6470	.	1	1197943	0	C	T	bias_e_value=1704830	bias_p_value=0.808303	consensus_score=207.4	fisher_strand_p_value=0.448718	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=43/34	major_frequency=9.872e-01	minor_base=A	minor_cov=0/1	new_cov=43/34	polymorphism_frequency=9.872e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/35
RA	6471	.	1	1197952	0	C	T	consensus_score=216.8	frequency=1	major_base=T	major_cov=41/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/36
RA	6472	.	1	1197970	0	C	T	consensus_score=204.2	frequency=1	major_base=T	major_cov=40/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/37
RA	6473	.	1	1197979	0	G	A	consensus_score=199.4	frequency=1	major_base=A	major_cov=37/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/37
RA	6474	.	1	1198013	0	G	A	bias_e_value=2107760	bias_p_value=0.999345	consensus_score=175.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.964028	major_base=A	major_cov=33/33	major_frequency=9.851e-01	minor_base=G	minor_cov=1/0	new_cov=33/33	polymorphism_frequency=9.851e-01	polymorphism_score=-5.2	prediction=consensus	ref_cov=1/0	total_cov=34/33
RA	6475	.	1	1198022	0	G	C	bias_e_value=2072370	bias_p_value=0.982566	consensus_score=188.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.819175	major_base=C	major_cov=33/33	major_frequency=9.851e-01	minor_base=G	minor_cov=1/0	new_cov=33/33	polymorphism_frequency=9.851e-01	polymorphism_score=-3.6	prediction=consensus	ref_cov=1/0	total_cov=34/33
RA	6476	.	1	1198049	0	T	C	consensus_score=187.8	frequency=1	major_base=C	major_cov=33/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/32
RA	6477	.	1	1198052	0	A	G	consensus_score=187.9	frequency=1	major_base=G	major_cov=33/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/32
RA	6478	.	1	1198058	0	G	A	consensus_score=175.9	frequency=1	major_base=A	major_cov=34/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/32
RA	6479	.	1	1198063	0	T	C	consensus_score=184.5	frequency=1	major_base=C	major_cov=33/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/32
RA	6480	.	1	1198067	0	G	A	consensus_score=174.9	frequency=1	major_base=A	major_cov=33/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/32
RA	6481	.	1	1198070	0	A	T	consensus_score=174.9	frequency=1	major_base=T	major_cov=33/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/32
RA	6482	.	1	1198076	0	C	T	bias_e_value=2109090	bias_p_value=0.999975	consensus_score=187.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.993001	major_base=T	major_cov=33/34	major_frequency=9.853e-01	minor_base=C	minor_cov=1/0	new_cov=33/34	polymorphism_frequency=9.853e-01	polymorphism_score=-4.9	prediction=consensus	ref_cov=1/0	total_cov=34/34
RA	6483	.	1	1198091	0	T	A	consensus_score=187.2	frequency=1	major_base=A	major_cov=36/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/30
RA	6484	.	1	1198099	0	C	G	consensus_score=175.0	frequency=1	major_base=G	major_cov=32/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/29
RA	6485	.	1	1198100	0	C	T	consensus_score=158.2	frequency=1	major_base=T	major_cov=32/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/29
RA	6486	.	1	1198103	0	A	T	consensus_score=162.2	frequency=1	major_base=T	major_cov=32/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/29
RA	6487	.	1	1198109	0	C	A	consensus_score=172.2	frequency=1	major_base=A	major_cov=33/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/31
RA	6488	.	1	1198118	0	T	G	consensus_score=179.5	frequency=1	major_base=G	major_cov=33/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/32
RA	6489	.	1	1198124	0	G	C	consensus_score=143.1	frequency=1	major_base=C	major_cov=28/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/22
RA	6490	.	1	1198127	0	C	T	consensus_score=132.9	frequency=1	major_base=T	major_cov=28/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/22
RA	6491	.	1	1198131	0	C	T	consensus_score=130.8	frequency=1	major_base=T	major_cov=28/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/22
RA	6492	.	1	1198133	0	T	A	consensus_score=131.9	frequency=1	major_base=A	major_cov=28/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/22
RA	6493	.	1	1198139	0	G	T	consensus_score=170.3	frequency=1	major_base=T	major_cov=36/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/28
RA	6494	.	1	1198142	0	G	T	consensus_score=172.2	frequency=1	major_base=T	major_cov=36/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/28
RA	6495	.	1	1198148	0	A	G	consensus_score=170.2	frequency=1	major_base=G	major_cov=35/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/25
RA	6496	.	1	1198160	0	G	A	consensus_score=179.8	frequency=1	major_base=A	major_cov=38/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/29
RA	6497	.	1	1198163	0	T	A	consensus_score=177.7	frequency=1	major_base=A	major_cov=38/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/29
RA	6498	.	1	1198169	0	G	A	consensus_score=174.9	frequency=1	major_base=A	major_cov=38/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/28
RA	6499	.	1	1198175	0	G	A	consensus_score=162.5	frequency=1	major_base=A	major_cov=36/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/26
RA	6500	.	1	1198178	0	T	A	consensus_score=165.5	frequency=1	major_base=A	major_cov=36/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/26
RA	6501	.	1	1198181	0	A	C	consensus_score=169.0	frequency=1	major_base=C	major_cov=36/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/26
RA	6502	.	1	1198184	0	T	A	consensus_score=165.6	frequency=1	major_base=A	major_cov=36/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/26
RA	6503	.	1	1198187	0	G	T	consensus_score=164.0	frequency=1	major_base=T	major_cov=36/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/26
RA	6504	.	1	1198193	0	T	C	consensus_score=182.6	frequency=1	major_base=C	major_cov=37/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/29
RA	6505	.	1	1198199	0	T	C	consensus_score=166.7	frequency=1	major_base=C	major_cov=34/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/28
RA	6506	.	1	1198202	0	G	A	consensus_score=175.2	frequency=1	major_base=A	major_cov=34/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/28
RA	6507	.	1	1198205	0	G	C	consensus_score=175.9	frequency=1	major_base=C	major_cov=34/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/28
RA	6508	.	1	1198208	0	A	G	consensus_score=173.3	frequency=1	major_base=G	major_cov=34/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/28
RA	6509	.	1	1198238	0	A	C	consensus_score=220.5	frequency=1	major_base=C	major_cov=38/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/39
RA	6510	.	1	1198283	0	G	A	consensus_score=218.6	frequency=1	major_base=A	major_cov=40/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/40
RA	6511	.	1	1198301	0	C	T	consensus_score=220.3	frequency=1	major_base=T	major_cov=42/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/39
RA	6512	.	1	1198370	0	T	C	consensus_score=219.0	frequency=1	major_base=C	major_cov=39/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/37
RA	6513	.	1	1198412	0	G	A	consensus_score=192.5	frequency=1	major_base=A	major_cov=32/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/39
RA	6514	.	1	1198418	0	A	G	consensus_score=203.6	frequency=1	major_base=G	major_cov=32/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/40
RA	6515	.	1	1198433	0	T	C	consensus_score=209.3	frequency=1	major_base=C	major_cov=33/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/40
RA	6516	.	1	1198439	0	C	T	consensus_score=194.5	frequency=1	major_base=T	major_cov=32/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/40
RA	6517	.	1	1198469	0	A	G	consensus_score=208.7	frequency=1	major_base=G	major_cov=33/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/40
RA	6518	.	1	1198502	0	T	C	consensus_score=187.2	frequency=1	major_base=C	major_cov=32/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/36
RA	6519	.	1	1198511	0	C	T	consensus_score=165.9	frequency=1	major_base=T	major_cov=29/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/34
RA	6520	.	1	1198515	0	C	T	consensus_score=143.6	frequency=1	major_base=T	major_cov=21/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/33
RA	6521	.	1	1198517	0	T	G	consensus_score=155.3	frequency=1	major_base=G	major_cov=21/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/33
RA	6522	.	1	1198521	0	G	A	consensus_score=143.8	frequency=1	major_base=A	major_cov=21/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/33
RA	6523	.	1	1198523	0	A	T	consensus_score=142.4	frequency=1	major_base=T	major_cov=21/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/33
RA	6524	.	1	1198532	0	G	A	consensus_score=140.5	frequency=1	major_base=A	major_cov=20/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/32
RA	6525	.	1	1198533	0	T	C	consensus_score=138.2	frequency=1	major_base=C	major_cov=20/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/32
RA	6526	.	1	1198535	0	A	C	consensus_score=137.8	frequency=1	major_base=C	major_cov=20/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/32
RA	6527	.	1	1198541	0	T	A	consensus_score=141.1	frequency=1	major_base=A	major_cov=20/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/32
RA	6528	.	1	1198544	0	T	G	consensus_score=143.4	frequency=1	major_base=G	major_cov=20/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/32
RA	6529	.	1	1198548	0	G	A	consensus_score=137.4	frequency=1	major_base=A	major_cov=20/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/32
RA	6530	.	1	1198550	0	G	A	consensus_score=137.6	frequency=1	major_base=A	major_cov=20/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/32
RA	6531	.	1	1198556	0	A	T	consensus_score=136.3	frequency=1	major_base=T	major_cov=20/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/32
RA	6532	.	1	1198557	0	A	C	consensus_score=151.4	frequency=1	major_base=C	major_cov=20/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/32
RA	6533	.	1	1198559	0	C	A	consensus_score=138.2	frequency=1	major_base=A	major_cov=20/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/32
RA	6534	.	1	1198565	0	A	C	consensus_score=182.8	frequency=1	major_base=C	major_cov=24/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/40
RA	6535	.	1	1198669	0	G	T	consensus_score=186.0	frequency=1	major_base=T	major_cov=33/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/33
RA	6536	.	1	1198717	0	C	T	consensus_score=134.7	frequency=1	major_base=T	major_cov=24/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/27
RA	6537	.	1	1198742	0	T	C	consensus_score=130.8	frequency=1	major_base=C	major_cov=20/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/27
RA	6538	.	1	1198748	0	C	T	consensus_score=135.3	frequency=1	major_base=T	major_cov=23/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/29
RA	6539	.	1	1198791	0	A	C	consensus_score=169.3	frequency=1	major_base=C	major_cov=25/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/34
RA	6540	.	1	1198803	0	T	C	consensus_score=174.2	frequency=1	major_base=C	major_cov=29/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/32
RA	6541	.	1	1198815	0	A	G	consensus_score=189.7	frequency=1	major_base=G	major_cov=35/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/31
RA	6542	.	1	1198824	0	T	C	consensus_score=187.3	frequency=1	major_base=C	major_cov=35/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/34
RA	6543	.	1	1198827	0	G	A	consensus_score=196.3	frequency=1	major_base=A	major_cov=35/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/34
RA	6544	.	1	1198873	0	G	A	consensus_score=236.4	frequency=1	major_base=A	major_cov=46/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/42
RA	6545	.	1	1198890	0	C	G	consensus_score=226.5	frequency=1	major_base=G	major_cov=45/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/40
RA	6546	.	1	1198893	0	A	G	bias_e_value=1735440	bias_p_value=0.822818	consensus_score=228.6	fisher_strand_p_value=0.470588	frequency=1	ks_quality_p_value=0.993022	major_base=G	major_cov=45/39	major_frequency=9.882e-01	minor_base=T	minor_cov=0/1	new_cov=45/39	polymorphism_frequency=9.882e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/40
RA	6547	.	1	1198896	0	G	A	consensus_score=224.2	frequency=1	major_base=A	major_cov=45/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/40
RA	6548	.	1	1198897	0	C	T	consensus_score=224.6	frequency=1	major_base=T	major_cov=45/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/40
RA	6549	.	1	1198899	0	G	A	consensus_score=225.5	frequency=1	major_base=A	major_cov=45/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/40
RA	6550	.	1	1198908	0	T	C	consensus_score=256.8	frequency=1	major_base=C	major_cov=46/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/43
RA	6551	.	1	1198911	0	T	C	consensus_score=258.9	frequency=1	major_base=C	major_cov=46/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/43
RA	6552	.	1	1198918	0	C	A	consensus_score=225.1	frequency=1	major_base=A	major_cov=44/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/40
RA	6553	.	1	1198920	0	A	T	consensus_score=225.1	frequency=1	major_base=T	major_cov=44/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/40
RA	6554	.	1	1198923	0	C	T	consensus_score=222.1	frequency=1	major_base=T	major_cov=44/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/40
RA	6555	.	1	1198970	0	T	C	consensus_score=257.6	frequency=1	major_base=C	major_cov=49/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/41
RA	6556	.	1	1199038	0	T	C	consensus_score=221.6	frequency=1	major_base=C	major_cov=38/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/39
RA	6557	.	1	1199040	0	G	A	consensus_score=208.2	frequency=1	major_base=A	major_cov=38/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/39
RA	6558	.	1	1199069	0	A	G	consensus_score=212.1	frequency=1	major_base=G	major_cov=32/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/42
RA	6559	.	1	1199076	0	T	C	consensus_score=208.0	frequency=1	major_base=C	major_cov=30/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/42
RA	6560	.	1	1199078	0	A	G	consensus_score=208.2	frequency=1	major_base=G	major_cov=30/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/42
RA	6561	.	1	1199101	0	G	A	consensus_score=213.2	frequency=1	major_base=A	major_cov=37/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/43
RA	6562	.	1	1199103	0	A	G	consensus_score=231.4	frequency=1	major_base=G	major_cov=37/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/43
RA	6563	.	1	1199154	0	G	A	consensus_score=220.0	frequency=1	major_base=A	major_cov=41/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/41
RA	6564	.	1	1199192	0	C	T	consensus_score=173.5	frequency=1	major_base=T	major_cov=30/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/35
RA	6565	.	1	1199205	0	C	T	consensus_score=167.0	frequency=1	major_base=T	major_cov=30/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/33
RA	6566	.	1	1199211	0	A	G	consensus_score=175.9	frequency=1	major_base=G	major_cov=30/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/31
RA	6567	.	1	1199232	0	A	G	consensus_score=172.6	frequency=1	major_base=G	major_cov=31/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/30
RA	6568	.	1	1199241	0	G	A	consensus_score=175.6	frequency=1	major_base=A	major_cov=33/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/31
RA	6569	.	1	1199254	0	G	T	consensus_score=152.2	frequency=1	major_base=T	major_cov=33/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/23
RA	6570	.	1	1199271	0	C	T	consensus_score=148.4	frequency=1	major_base=T	major_cov=32/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/23
RA	6571	.	1	1201740	0	A	G	consensus_score=153.2	frequency=1	major_base=G	major_cov=32/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/25
RA	6572	.	1	1201746	0	A	T	consensus_score=150.4	frequency=1	major_base=T	major_cov=32/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/24
RA	6573	.	1	1201747	0	A	T	consensus_score=152.2	frequency=1	major_base=T	major_cov=32/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/24
RA	6574	.	1	1201758	0	G	A	consensus_score=160.6	frequency=1	major_base=A	major_cov=32/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/28
RA	6575	.	1	1201767	0	A	G	consensus_score=175.5	frequency=1	major_base=G	major_cov=33/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/29
RA	6576	.	1	1202079	0	G	A	consensus_score=199.6	frequency=1	major_base=A	major_cov=36/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/36
RA	6577	.	1	1202091	0	T	G	consensus_score=223.3	frequency=1	major_base=G	major_cov=39/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/38
RA	6578	.	1	1202124	0	T	A	consensus_score=232.4	frequency=1	major_base=A	major_cov=46/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/39
RA	6579	.	1	1202145	0	T	G	consensus_score=233.9	frequency=1	major_base=G	major_cov=46/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/36
RA	6580	.	1	1202157	0	C	A	consensus_score=214.5	frequency=1	major_base=A	major_cov=42/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/34
RA	6581	.	1	1202218	0	A	G	consensus_score=217.9	frequency=1	major_base=G	major_cov=40/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/35
RA	6582	.	1	1202256	0	T	C	consensus_score=218.0	frequency=1	major_base=C	major_cov=44/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/34
RA	6583	.	1	1202286	0	G	A	consensus_score=201.1	frequency=1	major_base=A	major_cov=41/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/34
RA	6584	.	1	1202316	0	G	A	consensus_score=188.7	frequency=1	major_base=A	major_cov=41/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/30
RA	6585	.	1	1202325	0	G	C	consensus_score=209.8	frequency=1	major_base=C	major_cov=41/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/32
RA	6586	.	1	1202716	0	C	T	consensus_score=193.0	frequency=1	major_base=T	major_cov=34/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/37
RA	6587	.	1	1202724	0	C	T	consensus_score=176.3	frequency=1	major_base=T	major_cov=30/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/35
RA	6588	.	1	1202733	0	A	C	consensus_score=165.5	frequency=1	major_base=C	major_cov=28/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/32
RA	6589	.	1	1202739	0	C	G	consensus_score=159.1	frequency=1	major_base=G	major_cov=27/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/31
RA	6590	.	1	1202742	0	A	G	consensus_score=159.9	frequency=1	major_base=G	major_cov=27/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/31
RA	6591	.	1	1202745	0	T	A	consensus_score=161.9	frequency=1	major_base=A	major_cov=27/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/31
RA	6592	.	1	1202748	0	C	T	consensus_score=154.5	frequency=1	major_base=T	major_cov=27/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/31
RA	6593	.	1	1202749	0	C	A	consensus_score=160.1	frequency=1	major_base=A	major_cov=27/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/31
RA	6594	.	1	1202751	0	A	T	consensus_score=165.0	frequency=1	major_base=T	major_cov=27/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/31
RA	6595	.	1	1202754	0	A	G	consensus_score=160.2	frequency=1	major_base=G	major_cov=27/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/31
RA	6596	.	1	1202757	0	G	T	consensus_score=158.5	frequency=1	major_base=T	major_cov=27/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/31
RA	6597	.	1	1202778	0	G	T	consensus_score=166.2	frequency=1	major_base=T	major_cov=32/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/30
RA	6598	.	1	1202797	0	T	C	consensus_score=150.1	frequency=1	major_base=C	major_cov=28/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/25
RA	6599	.	1	1202799	0	A	G	consensus_score=152.2	frequency=1	major_base=G	major_cov=28/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/25
RA	6600	.	1	1202820	0	C	G	consensus_score=184.1	frequency=1	major_base=G	major_cov=32/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/32
RA	6601	.	1	1202841	0	A	G	bias_e_value=1731090	bias_p_value=0.820754	consensus_score=196.8	fisher_strand_p_value=0.464789	frequency=1	ks_quality_p_value=0.999598	major_base=G	major_cov=32/38	major_frequency=9.859e-01	minor_base=A	minor_cov=1/0	new_cov=32/38	polymorphism_frequency=9.859e-01	polymorphism_score=-5.0	prediction=consensus	ref_cov=1/0	total_cov=33/38
RA	6602	.	1	1202853	0	G	A	consensus_score=199.1	frequency=1	major_base=A	major_cov=33/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/40
RA	6603	.	1	1202892	0	G	A	bias_e_value=1431890	bias_p_value=0.678894	consensus_score=214.4	fisher_strand_p_value=0.432099	frequency=1	ks_quality_p_value=0.729023	major_base=A	major_cov=34/46	major_frequency=9.877e-01	minor_base=G	minor_cov=1/0	new_cov=34/46	polymorphism_frequency=9.877e-01	polymorphism_score=-4.9	prediction=consensus	ref_cov=1/0	total_cov=35/46
RA	6604	.	1	1202924	0	T	C	consensus_score=233.4	frequency=1	major_base=C	major_cov=35/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/46
RA	6605	.	1	1202925	0	A	C	bias_e_value=2109140	bias_p_value=1	consensus_score=231.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=35/45	major_frequency=9.877e-01	minor_base=A	minor_cov=0/1	new_cov=35/45	polymorphism_frequency=9.877e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=35/46
RA	6606	.	1	1202930	0	T	C	consensus_score=236.7	frequency=1	major_base=C	major_cov=37/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/46
RA	6607	.	1	1202960	0	T	C	consensus_score=272.9	frequency=1	major_base=C	major_cov=43/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/52
RA	6608	.	1	1202964	0	T	C	consensus_score=269.1	frequency=1	major_base=C	major_cov=42/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/51
RA	6609	.	1	1202986	0	G	A	consensus_score=257.7	frequency=1	major_base=A	major_cov=43/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/48
RA	6610	.	1	1202999	0	A	G	consensus_score=246.8	frequency=1	major_base=G	major_cov=42/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/48
RA	6611	.	1	1203013	0	A	G	bias_e_value=1568970	bias_p_value=0.743891	consensus_score=238.0	fisher_strand_p_value=0.404762	frequency=1	ks_quality_p_value=0.929195	major_base=G	major_cov=33/50	major_frequency=9.881e-01	minor_base=.	minor_cov=1/0	new_cov=33/50	polymorphism_frequency=9.881e-01	polymorphism_score=-3.3	prediction=consensus	ref_cov=0/0	total_cov=34/50
RA	6612	.	1	1203030	0	C	T	bias_e_value=2109140	bias_p_value=1	consensus_score=223.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=32/48	major_frequency=9.877e-01	minor_base=C	minor_cov=0/1	new_cov=32/48	polymorphism_frequency=9.877e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=33/49
RA	6613	.	1	1203052	0	A	C	bias_e_value=2109140	bias_p_value=1	consensus_score=222.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=34/49	major_frequency=9.881e-01	minor_base=A	minor_cov=0/1	new_cov=34/49	polymorphism_frequency=9.881e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=34/50
RA	6614	.	1	1203060	0	C	T	consensus_score=226.7	frequency=1	major_base=T	major_cov=39/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/45
RA	6615	.	1	1203118	0	C	A	consensus_score=225.9	frequency=1	major_base=A	major_cov=47/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/41
RA	6616	.	1	1203138	0	C	T	bias_e_value=770788	bias_p_value=0.365451	consensus_score=199.8	fisher_strand_p_value=0.115799	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=41/37	major_frequency=9.512e-01	minor_base=G	minor_cov=0/4	new_cov=41/37	polymorphism_frequency=9.512e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/41
RA	6617	.	1	1203159	0	C	T	bias_e_value=203974	bias_p_value=0.0967096	consensus_score=155.1	fisher_strand_p_value=0.0196097	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=37/28	major_frequency=9.286e-01	minor_base=A	minor_cov=0/5	new_cov=37/28	polymorphism_frequency=9.286e-01	polymorphism_score=-3.7	prediction=consensus	ref_cov=0/0	total_cov=37/33
RA	6618	.	1	1203165	0	A	G	bias_e_value=1162210	bias_p_value=0.551035	consensus_score=159.6	fisher_strand_p_value=0.218634	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=37/31	major_frequency=9.714e-01	minor_base=T	minor_cov=0/2	new_cov=37/31	polymorphism_frequency=9.714e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/33
RA	6619	.	1	1203188	0	A	C	consensus_score=170.7	frequency=1	major_base=C	major_cov=35/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/30
RA	6620	.	1	1203352	0	C	T	consensus_score=213.2	frequency=1	major_base=T	major_cov=38/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/41
RA	6621	.	1	1203381	0	C	T	consensus_score=207.7	frequency=1	major_base=T	major_cov=41/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/36
RA	6622	.	1	1203396	0	T	C	consensus_score=202.7	frequency=1	major_base=C	major_cov=37/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/33
RA	6623	.	1	1203411	0	T	C	consensus_score=193.8	frequency=1	major_base=C	major_cov=38/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/30
RA	6624	.	1	1203414	0	C	T	consensus_score=193.0	frequency=1	major_base=T	major_cov=38/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/30
RA	6625	.	1	1203423	0	G	A	consensus_score=187.2	frequency=1	major_base=A	major_cov=38/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/31
RA	6626	.	1	1203480	0	G	A	consensus_score=193.4	frequency=1	major_base=A	major_cov=41/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/29
RA	6627	.	1	1203510	0	A	G	consensus_score=169.1	frequency=1	major_base=G	major_cov=41/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/18
RA	6628	.	1	1203513	0	C	G	consensus_score=157.2	frequency=1	major_base=G	major_cov=41/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/18
RA	6629	.	1	1203519	0	C	T	consensus_score=171.1	frequency=1	major_base=T	major_cov=45/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/18
RA	6630	.	1	1203528	0	T	C	consensus_score=182.5	frequency=1	major_base=C	major_cov=45/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/21
RA	6631	.	1	1203558	0	T	C	consensus_score=197.7	frequency=1	major_base=C	major_cov=46/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/23
RA	6632	.	1	1203986	0	T	C	consensus_score=275.9	frequency=1	major_base=C	major_cov=47/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/48
RA	6633	.	1	1204056	0	C	T	consensus_score=213.1	frequency=1	major_base=T	major_cov=39/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/41
RA	6634	.	1	1204058	0	G	A	bias_e_value=1766940	bias_p_value=0.837752	consensus_score=210.0	fisher_strand_p_value=0.4875	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=38/41	major_frequency=9.875e-01	minor_base=G	minor_cov=1/0	new_cov=38/41	polymorphism_frequency=9.875e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=39/41
RA	6635	.	1	1204061	0	T	C	consensus_score=219.9	frequency=1	major_base=C	major_cov=39/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/41
RA	6636	.	1	1204067	0	G	A	consensus_score=217.0	frequency=1	major_base=A	major_cov=39/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/41
RA	6637	.	1	1204070	0	C	T	consensus_score=228.3	frequency=1	major_base=T	major_cov=39/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/41
RA	6638	.	1	1204076	0	T	C	consensus_score=219.0	frequency=1	major_base=C	major_cov=37/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/41
RA	6639	.	1	1204091	0	T	A	consensus_score=187.9	frequency=1	major_base=A	major_cov=33/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/35
RA	6640	.	1	1204106	0	C	T	consensus_score=141.7	frequency=1	major_base=T	major_cov=23/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/27
RA	6641	.	1	1204107	0	C	T	consensus_score=139.8	frequency=1	major_base=T	major_cov=23/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/27
RA	6642	.	1	1204108	0	T	G	consensus_score=140.6	frequency=1	major_base=G	major_cov=23/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/27
RA	6643	.	1	1204112	0	A	T	consensus_score=132.5	frequency=1	major_base=T	major_cov=23/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/27
RA	6644	.	1	1204127	0	C	A	consensus_score=123.5	frequency=1	major_base=A	major_cov=19/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/27
RA	6645	.	1	1204133	0	A	G	consensus_score=76.9	frequency=1	major_base=G	major_cov=12/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/17
RA	6646	.	1	1204135	1	.	T	consensus_score=74.5	frequency=1	major_base=T	major_cov=12/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/17
RA	6647	.	1	1204138	0	T	C	consensus_score=79.6	frequency=1	major_base=C	major_cov=12/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/17
RA	6648	.	1	1204139	0	A	C	consensus_score=80.5	frequency=1	major_base=C	major_cov=12/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/17
RA	6649	.	1	1204142	0	G	.	consensus_score=120.3	frequency=1	major_base=.	major_cov=12/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/17
RA	6650	.	1	1204154	0	C	A	consensus_score=91.5	frequency=1	major_base=A	major_cov=15/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/20
RA	6651	.	1	1204157	0	C	G	consensus_score=96.5	frequency=1	major_base=G	major_cov=15/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/20
RA	6652	.	1	1204158	0	T	A	bias_e_value=1669810	bias_p_value=0.791699	consensus_score=87.6	fisher_strand_p_value=0.428571	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=14/20	major_frequency=9.714e-01	minor_base=G	minor_cov=1/0	new_cov=14/20	polymorphism_frequency=9.714e-01	polymorphism_score=-5.7	prediction=consensus	ref_cov=0/0	total_cov=15/20
RA	6653	.	1	1204161	0	C	T	consensus_score=90.3	frequency=1	major_base=T	major_cov=15/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/20
RA	6654	.	1	1204166	0	G	A	consensus_score=91.2	frequency=1	major_base=A	major_cov=15/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/20
RA	6655	.	1	1204169	0	T	C	consensus_score=96.2	frequency=1	major_base=C	major_cov=15/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/20
RA	6656	.	1	1204181	0	C	A	consensus_score=143.7	frequency=1	major_base=A	major_cov=27/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/26
RA	6657	.	1	1204190	0	G	A	consensus_score=128.7	frequency=1	major_base=A	major_cov=26/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/22
RA	6658	.	1	1204199	0	G	A	consensus_score=106.8	frequency=1	major_base=A	major_cov=22/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/16
RA	6659	.	1	1204200	0	A	T	consensus_score=102.8	frequency=1	major_base=T	major_cov=22/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/16
RA	6660	.	1	1204201	0	A	C	consensus_score=101.9	frequency=1	major_base=C	major_cov=22/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/16
RA	6661	.	1	1204202	0	T	C	consensus_score=105.4	frequency=1	major_base=C	major_cov=22/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/16
RA	6662	.	1	1204217	0	C	T	consensus_score=99.5	frequency=1	major_base=T	major_cov=22/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/15
RA	6663	.	1	1204226	0	G	C	consensus_score=72.9	frequency=1	major_base=C	major_cov=15/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/12
RA	6664	.	1	1204229	0	T	A	consensus_score=67.2	frequency=1	major_base=A	major_cov=15/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/12
RA	6665	.	1	1204230	0	G	A	consensus_score=68.7	frequency=1	major_base=A	major_cov=15/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/12
RA	6666	.	1	1204231	0	C	A	consensus_score=67.0	frequency=1	major_base=A	major_cov=15/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/12
RA	6667	.	1	1204232	0	C	A	consensus_score=67.7	frequency=1	major_base=A	major_cov=15/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/12
RA	6668	.	1	1204235	0	G	A	consensus_score=67.7	frequency=1	major_base=A	major_cov=15/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/12
RA	6669	.	1	1204240	0	C	T	consensus_score=68.8	frequency=1	major_base=T	major_cov=15/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/12
RA	6670	.	1	1204241	0	G	A	consensus_score=69.1	frequency=1	major_base=A	major_cov=15/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/12
RA	6671	.	1	1204243	0	G	A	consensus_score=68.7	frequency=1	major_base=A	major_cov=15/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/12
RA	6672	.	1	1204244	0	G	A	consensus_score=67.1	frequency=1	major_base=A	major_cov=15/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/12
RA	6673	.	1	1204245	0	G	A	consensus_score=66.2	frequency=1	major_base=A	major_cov=15/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/12
RA	6674	.	1	1204253	0	C	T	consensus_score=67.3	frequency=1	major_base=T	major_cov=15/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/12
RA	6675	.	1	1204256	0	G	A	consensus_score=67.0	frequency=1	major_base=A	major_cov=15/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/12
RA	6676	.	1	1204257	0	A	T	consensus_score=67.0	frequency=1	major_base=T	major_cov=15/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/12
RA	6677	.	1	1204266	0	G	A	consensus_score=74.6	frequency=1	major_base=A	major_cov=16/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/13
RA	6678	.	1	1204274	0	C	G	consensus_score=80.8	frequency=1	major_base=G	major_cov=16/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/15
RA	6679	.	1	1204280	0	C	T	consensus_score=83.0	frequency=1	major_base=T	major_cov=16/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/15
RA	6680	.	1	1204289	0	G	A	consensus_score=82.7	frequency=1	major_base=A	major_cov=16/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/16
RA	6681	.	1	1204295	0	C	T	consensus_score=80.4	frequency=1	major_base=T	major_cov=16/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/16
RA	6682	.	1	1204298	0	A	T	consensus_score=82.3	frequency=1	major_base=T	major_cov=16/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/16
RA	6683	.	1	1204304	0	T	G	consensus_score=86.9	frequency=1	major_base=G	major_cov=16/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/16
RA	6684	.	1	1204305	0	T	C	consensus_score=83.3	frequency=1	major_base=C	major_cov=16/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/16
RA	6685	.	1	1204307	0	A	C	consensus_score=83.7	frequency=1	major_base=C	major_cov=16/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/16
RA	6686	.	1	1204310	0	C	T	consensus_score=81.8	frequency=1	major_base=T	major_cov=16/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/16
RA	6687	.	1	1204328	0	C	T	consensus_score=133.5	frequency=1	major_base=T	major_cov=24/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/26
RA	6688	.	1	1204457	0	C	T	consensus_score=185.3	frequency=1	major_base=T	major_cov=30/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/38
RA	6689	.	1	1204460	0	T	A	consensus_score=180.3	frequency=1	major_base=A	major_cov=30/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/38
RA	6690	.	1	1204472	0	G	A	consensus_score=205.9	frequency=1	major_base=A	major_cov=31/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/45
RA	6691	.	1	1204481	0	A	G	consensus_score=221.9	frequency=1	major_base=G	major_cov=30/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/47
RA	6692	.	1	1204484	0	C	A	consensus_score=215.6	frequency=1	major_base=A	major_cov=30/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/47
RA	6693	.	1	1204511	0	C	T	consensus_score=248.0	frequency=1	major_base=T	major_cov=36/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/50
RA	6694	.	1	1204520	0	A	G	consensus_score=238.1	frequency=1	major_base=G	major_cov=36/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/49
RA	6695	.	1	1204529	0	A	G	consensus_score=236.0	frequency=1	major_base=G	major_cov=36/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/49
RA	6696	.	1	1204530	0	T	C	consensus_score=240.8	frequency=1	major_base=C	major_cov=36/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/49
RA	6697	.	1	1204556	0	A	G	consensus_score=230.1	frequency=1	major_base=G	major_cov=41/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/43
RA	6698	.	1	1204559	0	A	G	consensus_score=229.6	frequency=1	major_base=G	major_cov=41/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/43
RA	6699	.	1	1204959	0	C	T	consensus_score=228.9	frequency=1	major_base=T	major_cov=42/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/39
RA	6700	.	1	1204961	0	C	T	consensus_score=228.4	frequency=1	major_base=T	major_cov=42/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/39
RA	6701	.	1	1204964	0	T	G	consensus_score=224.8	frequency=1	major_base=G	major_cov=42/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/39
RA	6702	.	1	1204967	0	C	T	consensus_score=218.4	frequency=1	major_base=T	major_cov=42/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/39
RA	6703	.	1	1204994	0	C	T	consensus_score=201.1	frequency=1	major_base=T	major_cov=34/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/40
RA	6704	.	1	1204997	0	G	A	consensus_score=203.1	frequency=1	major_base=A	major_cov=34/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/40
RA	6705	.	1	1205001	0	C	A	consensus_score=208.7	frequency=1	major_base=A	major_cov=34/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/40
RA	6706	.	1	1205002	0	G	A	consensus_score=209.8	frequency=1	major_base=A	major_cov=34/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/40
RA	6707	.	1	1205153	0	C	A	consensus_score=198.6	frequency=1	major_base=A	major_cov=31/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/42
RA	6708	.	1	1205345	0	C	A	bias_e_value=2109140	bias_p_value=1	consensus_score=326.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=54/66	major_frequency=9.917e-01	minor_base=C	minor_cov=0/1	new_cov=54/66	polymorphism_frequency=9.917e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=54/67
RA	6709	.	1	1205354	0	T	C	consensus_score=352.9	frequency=1	major_base=C	major_cov=54/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/67
RA	6710	.	1	1205366	0	G	A	consensus_score=337.8	frequency=1	major_base=A	major_cov=53/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/65
RA	6711	.	1	1205378	0	A	T	consensus_score=312.1	frequency=1	major_base=T	major_cov=54/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/61
RA	6712	.	1	1205387	0	G	A	consensus_score=283.3	frequency=1	major_base=A	major_cov=51/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/53
RA	6713	.	1	1205390	0	C	T	consensus_score=299.3	frequency=1	major_base=T	major_cov=51/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/53
RA	6714	.	1	1205396	0	T	C	consensus_score=286.9	frequency=1	major_base=C	major_cov=50/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/50
RA	6715	.	1	1205403	0	G	A	consensus_score=247.5	frequency=1	major_base=A	major_cov=48/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/44
RA	6716	.	1	1205423	0	C	A	consensus_score=265.4	frequency=1	major_base=A	major_cov=47/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/46
RA	6717	.	1	1205426	0	A	T	bias_e_value=2076460	bias_p_value=0.984505	consensus_score=241.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.829202	major_base=T	major_cov=45/46	major_frequency=9.891e-01	minor_base=C	minor_cov=1/0	new_cov=45/46	polymorphism_frequency=9.891e-01	polymorphism_score=-5.3	prediction=consensus	ref_cov=0/0	total_cov=46/46
RA	6718	.	1	1205432	0	G	A	consensus_score=253.0	frequency=1	major_base=A	major_cov=45/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/49
RA	6719	.	1	1205465	0	G	A	consensus_score=220.3	frequency=1	major_base=A	major_cov=35/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/43
RA	6720	.	1	1205468	0	G	A	bias_e_value=1714600	bias_p_value=0.812935	consensus_score=204.9	fisher_strand_p_value=0.454545	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=34/42	major_frequency=9.870e-01	minor_base=C	minor_cov=1/0	new_cov=34/42	polymorphism_frequency=9.870e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/43
RA	6721	.	1	1205477	0	A	G	bias_e_value=1704570	bias_p_value=0.808183	consensus_score=210.6	fisher_strand_p_value=0.448718	frequency=1	ks_quality_p_value=0.999667	major_base=G	major_cov=34/43	major_frequency=9.872e-01	minor_base=A	minor_cov=1/0	new_cov=34/43	polymorphism_frequency=9.872e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=35/43
RA	6722	.	1	1205483	0	A	G	consensus_score=217.6	frequency=1	major_base=G	major_cov=35/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/43
RA	6723	.	1	1205490	0	C	T	consensus_score=202.3	frequency=1	major_base=T	major_cov=33/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/42
RA	6724	.	1	1205498	0	A	C	consensus_score=193.9	frequency=1	major_base=C	major_cov=31/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/41
RA	6725	.	1	1205525	0	C	T	consensus_score=129.1	frequency=1	major_base=T	major_cov=18/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/31
RA	6726	.	1	1205531	0	T	C	consensus_score=128.5	frequency=1	major_base=C	major_cov=18/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/30
RA	6727	.	1	1205540	0	A	T	consensus_score=96.9	frequency=1	major_base=T	major_cov=14/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/22
RA	6728	.	1	1205541	0	C	A	consensus_score=98.7	frequency=1	major_base=A	major_cov=14/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/22
RA	6729	.	1	1205543	0	G	A	consensus_score=95.0	frequency=1	major_base=A	major_cov=14/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/22
RA	6730	.	1	1205555	0	G	A	consensus_score=64.7	frequency=1	major_base=A	major_cov=12/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/13
RA	6731	.	1	1205561	0	C	T	consensus_score=52.7	frequency=1	major_base=T	major_cov=10/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/11
RA	6732	.	1	1205804	0	T	A	consensus_score=207.5	frequency=1	major_base=A	major_cov=31/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/46
RA	6733	.	1	1206820	0	T	C	consensus_score=150.3	frequency=1	major_base=C	major_cov=31/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/23
RA	6734	.	1	1207680	0	A	G	consensus_score=263.1	frequency=1	major_base=G	major_cov=53/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/37
RA	6735	.	1	1208319	0	C	A	consensus_score=261.6	frequency=1	major_base=A	major_cov=47/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/44
RA	6736	.	1	1211351	0	C	A	consensus_score=222.3	frequency=1	major_base=A	major_cov=43/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/38
RA	6737	.	1	1211734	0	T	C	consensus_score=177.1	frequency=1	major_base=C	major_cov=32/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/32
RA	6738	.	1	1212069	0	G	A	consensus_score=206.0	frequency=1	major_base=A	major_cov=38/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/38
RA	6739	.	1	1213737	0	T	G	bias_e_value=6.18236e-05	bias_p_value=2.93122e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=136.8	fisher_strand_p_value=1.02466e-12	frequency=3.333e-01	ks_quality_p_value=1	major_base=T	major_cov=15/45	major_frequency=6.667e-01	minor_base=G	minor_cov=30/0	new_cov=30/0	polymorphism_frequency=3.333e-01	polymorphism_score=15.1	prediction=polymorphism	ref_cov=15/45	total_cov=46/45
RA	6740	.	1	1214331	0	A	G	bias_e_value=1517740	bias_p_value=0.7196	consensus_score=312.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.352066	major_base=G	major_cov=61/52	major_frequency=9.912e-01	minor_base=A	minor_cov=1/0	new_cov=61/52	polymorphism_frequency=9.912e-01	polymorphism_score=-5.7	prediction=consensus	ref_cov=1/0	total_cov=62/52
RA	6741	.	1	1214363	0	A	.	consensus_score=509.2	frequency=1	major_base=.	major_cov=61/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/58
RA	6742	.	1	1215148	0	G	T	consensus_score=36.3	frequency=1	major_base=T	major_cov=5/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/10
RA	6743	.	1	1215658	0	C	T	consensus_score=315.3	frequency=1	major_base=T	major_cov=61/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/54
RA	6744	.	1	1216276	0	T	C	consensus_score=354.7	frequency=1	major_base=C	major_cov=71/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=71/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=71/56
RA	6745	.	1	1217473	0	C	G	consensus_score=299.0	frequency=1	major_base=G	major_cov=54/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/51
RA	6746	.	1	1218374	0	A	G	consensus_score=241.6	frequency=1	major_base=G	major_cov=45/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/42
RA	6747	.	1	1218994	0	G	T	consensus_score=330.1	frequency=1	major_base=T	major_cov=69/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=69/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=69/47
RA	6748	.	1	1219237	0	G	A	consensus_score=250.1	frequency=1	major_base=A	major_cov=50/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/42
RA	6749	.	1	1219620	0	A	G	bias_e_value=869380	bias_p_value=0.412196	consensus_score=326.6	fisher_strand_p_value=0.138523	frequency=1	ks_quality_p_value=0.999463	major_base=G	major_cov=68/52	major_frequency=9.677e-01	minor_base=T	minor_cov=4/0	new_cov=68/52	polymorphism_frequency=9.677e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=72/53
RA	6750	.	1	1219998	0	T	G	consensus_score=410.3	frequency=1	major_base=G	major_cov=88/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=88/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=88/59
RA	6751	.	1	1220637	0	G	A	consensus_score=222.0	frequency=1	major_base=A	major_cov=46/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/35
RA	6752	.	1	1220968	0	T	G	bias_e_value=2071740	bias_p_value=0.982265	consensus_score=196.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.817672	major_base=G	major_cov=31/41	major_frequency=9.863e-01	minor_base=.	minor_cov=0/1	new_cov=31/41	polymorphism_frequency=9.863e-01	polymorphism_score=-3.1	prediction=consensus	ref_cov=0/0	total_cov=31/42
RA	6753	.	1	1221076	0	G	.	consensus_score=218.8	frequency=1	major_base=.	major_cov=27/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/25
RA	6754	.	1	1221847	0	G	A	consensus_score=115.3	frequency=1	major_base=A	major_cov=26/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/18
RA	6755	.	1	1222325	1	.	G	bias_e_value=1850130	bias_p_value=0.877196	consensus_score=204.6	fisher_strand_p_value=0.547312	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=24/49	major_frequency=9.605e-01	minor_base=.	minor_cov=0/3	new_cov=24/49	polymorphism_frequency=9.605e-01	polymorphism_score=2.9	prediction=consensus	ref_cov=0/3	total_cov=24/52
RA	6756	.	1	1223940	0	T	C	consensus_score=301.6	frequency=1	major_base=C	major_cov=51/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/58
RA	6757	.	1	1224301	0	G	A	bias_e_value=1771560	bias_p_value=0.839945	consensus_score=301.3	fisher_strand_p_value=0.490566	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=51/54	major_frequency=9.906e-01	minor_base=T	minor_cov=1/0	new_cov=51/54	polymorphism_frequency=9.906e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/54
RA	6758	.	1	1225185	0	C	T	consensus_score=164.8	frequency=1	major_base=T	major_cov=38/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/21
RA	6759	.	1	1225448	0	T	C	consensus_score=279.4	frequency=1	major_base=C	major_cov=50/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/56
RA	6760	.	1	1225576	0	G	T	bias_e_value=741079	bias_p_value=0.351365	consensus_score=242.8	fisher_strand_p_value=0.109351	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=42/48	major_frequency=9.677e-01	minor_base=G	minor_cov=3/0	new_cov=42/48	polymorphism_frequency=9.677e-01	polymorphism_score=NA	prediction=consensus	ref_cov=3/0	total_cov=45/48
RA	6761	.	1	1226236	0	G	T	consensus_score=246.0	frequency=1	major_base=T	major_cov=48/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/39
RA	6762	.	1	1226597	0	C	T	consensus_score=254.6	frequency=1	major_base=T	major_cov=40/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/48
RA	6763	.	1	1227151	0	A	G	consensus_score=204.6	frequency=1	major_base=G	major_cov=34/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/37
RA	6764	.	1	1227710	0	C	T	consensus_score=264.2	frequency=1	major_base=T	major_cov=44/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/54
RA	6765	.	1	1227779	0	C	T	consensus_score=284.8	frequency=1	major_base=T	major_cov=46/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/53
RA	6766	.	1	1228138	0	C	A	consensus_score=290.2	frequency=1	major_base=A	major_cov=56/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/49
RA	6767	.	1	1228391	0	A	G	consensus_score=227.0	frequency=1	major_base=G	major_cov=44/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/39
RA	6768	.	1	1228455	0	C	T	consensus_score=243.8	frequency=1	major_base=T	major_cov=47/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/39
RA	6769	.	1	1230235	0	C	G	bias_e_value=2.45311e-05	bias_p_value=1.16308e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=153.9	fisher_strand_p_value=3.93413e-13	frequency=2.921e-01	ks_quality_p_value=1	major_base=C	major_cov=50/13	major_frequency=7.079e-01	minor_base=G	minor_cov=0/26	new_cov=0/26	polymorphism_frequency=2.921e-01	polymorphism_score=25.5	prediction=polymorphism	ref_cov=50/13	total_cov=50/39
RA	6770	.	1	1230255	0	C	A	bias_e_value=0.000296781	bias_p_value=1.40712e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=156.2	fisher_strand_p_value=5.64324e-12	frequency=2.759e-01	ks_quality_p_value=0.924208	major_base=C	major_cov=49/14	major_frequency=7.241e-01	minor_base=A	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=2.759e-01	polymorphism_score=16.6	prediction=polymorphism	ref_cov=49/14	total_cov=49/40
RA	6771	.	1	1230389	0	G	A	consensus_score=227.0	frequency=1	major_base=A	major_cov=47/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/36
RA	6772	.	1	1231439	0	G	T	bias_e_value=2108620	bias_p_value=0.999752	consensus_score=195.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.977794	major_base=T	major_cov=34/41	major_frequency=9.868e-01	minor_base=G	minor_cov=0/1	new_cov=34/41	polymorphism_frequency=9.868e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=34/42
RA	6773	.	1	1231442	0	A	T	bias_e_value=96.3088	bias_p_value=4.56625e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=149.7	fisher_strand_p_value=3.35639e-06	frequency=2.338e-01	ks_quality_p_value=1	major_base=A	major_cov=35/24	major_frequency=7.662e-01	minor_base=T	minor_cov=0/18	new_cov=0/18	polymorphism_frequency=2.338e-01	polymorphism_score=10.2	prediction=polymorphism	ref_cov=35/24	total_cov=35/42
RA	6774	.	1	1231485	0	C	T	bias_e_value=0.790293	bias_p_value=3.74699e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=87.6	fisher_strand_p_value=2.00764e-08	frequency=2.879e-01	ks_quality_p_value=0.996612	major_base=C	major_cov=34/13	major_frequency=7.121e-01	minor_base=T	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=2.879e-01	polymorphism_score=13.4	prediction=polymorphism	ref_cov=34/13	total_cov=34/32
RA	6775	.	1	1231573	0	G	T	consensus_score=150.2	frequency=1	major_base=T	major_cov=26/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/30
RA	6776	.	1	1231844	0	G	A	consensus_score=187.7	frequency=1	major_base=A	major_cov=40/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/29
RA	6777	.	1	1233103	0	A	G	consensus_score=229.4	frequency=1	major_base=G	major_cov=36/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/45
RA	6778	.	1	1233547	0	T	G	consensus_score=259.3	frequency=1	major_base=G	major_cov=42/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/49
RA	6779	.	1	1233613	0	C	T	consensus_score=248.7	frequency=1	major_base=T	major_cov=40/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/52
RA	6780	.	1	1234073	0	G	A	consensus_score=267.5	frequency=1	major_base=A	major_cov=55/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/43
RA	6781	.	1	1235760	0	A	G	consensus_score=212.5	frequency=1	major_base=G	major_cov=44/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/30
RA	6782	.	1	1236335	0	T	G	consensus_score=207.8	frequency=1	major_base=G	major_cov=31/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/43
RA	6783	.	1	1238835	0	A	C	consensus_score=281.6	frequency=1	major_base=C	major_cov=51/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/48
RA	6784	.	1	1241304	0	G	A	bias_e_value=91894	bias_p_value=0.0435694	consensus_score=169.8	fisher_strand_p_value=0.00737207	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=45/24	major_frequency=9.324e-01	minor_base=G	minor_cov=0/5	new_cov=45/24	polymorphism_frequency=9.324e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/5	total_cov=45/29
RA	6785	.	1	1242402	0	C	T	consensus_score=228.3	frequency=1	major_base=T	major_cov=35/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/48
RA	6786	.	1	1243218	0	G	.	consensus_score=328.6	frequency=1	major_base=.	major_cov=43/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/34
RA	6787	.	1	1243304	0	T	C	consensus_score=228.4	frequency=1	major_base=C	major_cov=43/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/36
RA	6788	.	1	1245214	0	C	A	consensus_score=244.9	frequency=1	major_base=A	major_cov=45/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/45
RA	6789	.	1	1245376	0	G	A	consensus_score=247.0	frequency=1	major_base=A	major_cov=32/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/59
RA	6790	.	1	1246213	0	C	G	bias_e_value=1777960	bias_p_value=0.842975	consensus_score=280.0	fisher_strand_p_value=0.494949	frequency=1	ks_quality_p_value=0.999794	major_base=G	major_cov=48/50	major_frequency=9.899e-01	minor_base=A	minor_cov=1/0	new_cov=48/50	polymorphism_frequency=9.899e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/50
RA	6791	.	1	1247357	0	T	C	consensus_score=239.8	frequency=1	major_base=C	major_cov=34/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/51
RA	6792	.	1	1247416	0	G	A	consensus_score=283.9	frequency=1	major_base=A	major_cov=57/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/46
RA	6793	.	1	1248575	0	G	A	bias_e_value=2109140	bias_p_value=1	consensus_score=198.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=43/33	major_frequency=9.870e-01	minor_base=G	minor_cov=1/0	new_cov=43/33	polymorphism_frequency=9.870e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=44/33
RA	6794	.	1	1248618	0	T	C	consensus_score=183.5	frequency=1	major_base=C	major_cov=38/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/27
RA	6795	.	1	1248722	0	G	A	consensus_score=144.4	frequency=1	major_base=A	major_cov=47/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/8
RA	6796	.	1	1248896	0	A	G	consensus_score=193.1	frequency=1	major_base=G	major_cov=54/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/14
RA	6797	.	1	1249128	0	T	C	consensus_score=220.0	frequency=1	major_base=C	major_cov=43/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/37
RA	6798	.	1	1249398	0	A	C	consensus_score=268.1	frequency=1	major_base=C	major_cov=47/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/51
RA	6799	.	1	1250210	0	A	G	consensus_score=224.3	frequency=1	major_base=G	major_cov=47/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/31
RA	6800	.	1	1250574	0	G	A	consensus_score=187.6	frequency=1	major_base=A	major_cov=40/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/29
RA	6801	.	1	1250648	0	G	C	consensus_score=233.1	frequency=1	major_base=C	major_cov=47/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/38
RA	6802	.	1	1250711	0	C	T	consensus_score=231.2	frequency=1	major_base=T	major_cov=43/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/41
RA	6803	.	1	1251672	0	C	A	consensus_score=227.4	frequency=1	major_base=A	major_cov=42/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/38
RA	6804	.	1	1251737	0	C	T	consensus_score=237.6	frequency=1	major_base=T	major_cov=45/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/39
RA	6805	.	1	1254329	0	A	G	consensus_score=201.2	frequency=1	major_base=G	major_cov=51/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/23
RA	6806	.	1	1254559	0	C	T	bias_e_value=1731800	bias_p_value=0.821093	consensus_score=192.3	fisher_strand_p_value=0.465753	frequency=1	ks_quality_p_value=0.998479	major_base=T	major_cov=39/33	major_frequency=9.863e-01	minor_base=C	minor_cov=0/1	new_cov=39/33	polymorphism_frequency=9.863e-01	polymorphism_score=-5.7	prediction=consensus	ref_cov=0/1	total_cov=39/34
RA	6807	.	1	1254650	0	G	A	bias_e_value=1754850	bias_p_value=0.832019	consensus_score=204.2	fisher_strand_p_value=0.481013	frequency=1	ks_quality_p_value=0.997083	major_base=A	major_cov=41/37	major_frequency=9.873e-01	minor_base=G	minor_cov=0/1	new_cov=41/37	polymorphism_frequency=9.873e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=41/38
RA	6808	.	1	1255755	0	T	C	consensus_score=251.4	frequency=1	major_base=C	major_cov=42/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/49
RA	6809	.	1	1256788	0	C	A	consensus_score=203.0	frequency=1	major_base=A	major_cov=40/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/35
RA	6810	.	1	1258324	0	T	C	consensus_score=186.3	frequency=1	major_base=C	major_cov=40/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/27
RA	6811	.	1	1259514	0	T	C	consensus_score=178.1	frequency=1	major_base=C	major_cov=36/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/26
RA	6812	.	1	1259609	0	A	G	consensus_score=173.3	frequency=1	major_base=G	major_cov=36/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/28
RA	6813	.	1	1260552	0	C	A	consensus_score=243.7	frequency=1	major_base=A	major_cov=50/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/39
RA	6814	.	1	1261125	0	C	T	consensus_score=177.0	frequency=1	major_base=T	major_cov=34/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/34
RA	6815	.	1	1261469	0	G	T	bias_e_value=1200430	bias_p_value=0.569155	consensus_score=107.3	fisher_strand_p_value=0.230769	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=8/30	major_frequency=9.744e-01	minor_base=G	minor_cov=1/0	new_cov=8/30	polymorphism_frequency=9.744e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=9/30
RA	6816	.	1	1262180	0	G	A	bias_e_value=2109140	bias_p_value=1	consensus_score=144.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=36/19	major_frequency=9.821e-01	minor_base=G	minor_cov=1/0	new_cov=36/19	polymorphism_frequency=9.821e-01	polymorphism_score=-5.0	prediction=consensus	ref_cov=1/0	total_cov=37/19
RA	6817	.	1	1262669	0	G	A	consensus_score=179.8	frequency=1	major_base=A	major_cov=43/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/23
RA	6818	.	1	1263344	0	A	C	bias_e_value=239048	bias_p_value=0.113339	consensus_score=140.5	fisher_strand_p_value=0.0245749	frequency=1	ks_quality_p_value=0.974709	major_base=C	major_cov=28/34	major_frequency=9.118e-01	minor_base=A	minor_cov=6/0	new_cov=28/34	polymorphism_frequency=9.118e-01	polymorphism_score=-3.8	prediction=consensus	ref_cov=6/0	total_cov=34/34
RA	6819	.	1	1263717	0	A	T	bias_e_value=0.0428189	bias_p_value=2.03016e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=121.9	fisher_strand_p_value=9.31511e-10	frequency=3.333e-01	ks_quality_p_value=1	major_base=A	major_cov=34/12	major_frequency=6.667e-01	minor_base=T	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=3.333e-01	polymorphism_score=16.8	prediction=polymorphism	ref_cov=34/12	total_cov=34/35
RA	6820	.	1	1263836	0	G	A	consensus_score=190.7	frequency=1	major_base=A	major_cov=36/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/35
RA	6821	.	1	1264552	0	A	G	consensus_score=123.5	frequency=1	major_base=G	major_cov=19/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/26
RA	6822	.	1	1264844	0	T	C	consensus_score=150.1	frequency=1	major_base=C	major_cov=23/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/30
RA	6823	.	1	1265205	0	A	G	consensus_score=259.9	frequency=1	major_base=G	major_cov=40/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/54
RA	6824	.	1	1266757	0	A	G	consensus_score=145.5	frequency=1	major_base=G	major_cov=32/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/22
RA	6825	.	1	1267275	0	C	G	bias_e_value=1470800	bias_p_value=0.697343	consensus_score=80.7	fisher_strand_p_value=0.451613	frequency=1	ks_quality_p_value=0.733684	major_base=G	major_cov=13/17	major_frequency=9.677e-01	minor_base=T	minor_cov=1/0	new_cov=13/17	polymorphism_frequency=9.677e-01	polymorphism_score=-3.7	prediction=consensus	ref_cov=0/0	total_cov=14/17
RA	6826	.	1	1267807	0	G	A	consensus_score=185.6	frequency=1	major_base=A	major_cov=26/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/43
RA	6827	.	1	1269141	0	C	T	consensus_score=79.0	frequency=1	major_base=T	major_cov=17/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/14
RA	6828	.	1	1269191	0	A	T	consensus_score=58.8	frequency=1	major_base=T	major_cov=13/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/10
RA	6829	.	1	1269202	0	A	T	consensus_score=68.3	frequency=1	major_base=T	major_cov=14/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/12
RA	6830	.	1	1269211	0	A	T	consensus_score=51.3	frequency=1	major_base=T	major_cov=11/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/9
RA	6831	.	1	1269212	0	A	T	consensus_score=52.0	frequency=1	major_base=T	major_cov=11/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/9
RA	6832	.	1	1269213	0	A	C	consensus_score=51.3	frequency=1	major_base=C	major_cov=11/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/9
RA	6833	.	1	1269216	0	A	T	consensus_score=48.4	frequency=1	major_base=T	major_cov=11/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/9
RA	6834	.	1	1269220	0	G	A	consensus_score=49.1	frequency=1	major_base=A	major_cov=11/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/9
RA	6835	.	1	1269224	0	A	G	consensus_score=47.5	frequency=1	major_base=G	major_cov=11/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/9
RA	6836	.	1	1269230	0	A	G	consensus_score=50.8	frequency=1	major_base=G	major_cov=11/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/9
RA	6837	.	1	1269231	0	T	A	consensus_score=52.3	frequency=1	major_base=A	major_cov=11/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/9
RA	6838	.	1	1269237	0	G	A	consensus_score=51.9	frequency=1	major_base=A	major_cov=11/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/10
RA	6839	.	1	1269271	0	A	G	consensus_score=74.8	frequency=1	major_base=G	major_cov=14/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/13
RA	6840	.	1	1269281	0	T	G	consensus_score=73.2	frequency=1	major_base=G	major_cov=14/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/13
RA	6841	.	1	1269285	0	A	G	consensus_score=74.4	frequency=1	major_base=G	major_cov=14/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/13
RA	6842	.	1	1269345	0	G	A	consensus_score=62.8	frequency=1	major_base=A	major_cov=15/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/10
RA	6843	.	1	1269348	0	G	A	consensus_score=61.8	frequency=1	major_base=A	major_cov=15/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/10
RA	6844	.	1	1269403	0	C	G	consensus_score=93.9	frequency=1	major_base=G	major_cov=21/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/15
RA	6845	.	1	1269451	0	A	T	bias_e_value=2109140	bias_p_value=0.999999	consensus_score=96.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998579	major_base=T	major_cov=22/15	major_frequency=9.737e-01	minor_base=A	minor_cov=1/0	new_cov=22/15	polymorphism_frequency=9.737e-01	polymorphism_score=-3.6	prediction=consensus	ref_cov=1/0	total_cov=23/15
RA	6846	.	1	1269453	0	C	T	consensus_score=99.4	frequency=1	major_base=T	major_cov=23/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/15
RA	6847	.	1	1269455	0	T	G	bias_e_value=1764620	bias_p_value=0.83665	consensus_score=92.2	fisher_strand_p_value=0.509246	frequency=1	ks_quality_p_value=0.954294	major_base=G	major_cov=21/15	major_frequency=9.474e-01	minor_base=T	minor_cov=2/0	new_cov=21/15	polymorphism_frequency=9.474e-01	polymorphism_score=-5.7	prediction=consensus	ref_cov=2/0	total_cov=23/15
RA	6848	.	1	1269456	0	C	G	consensus_score=101.8	frequency=1	major_base=G	major_cov=23/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/15
RA	6849	.	1	1269457	0	A	T	bias_e_value=1798880	bias_p_value=0.852898	consensus_score=93.4	fisher_strand_p_value=0.509246	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=21/15	major_frequency=9.474e-01	minor_base=G	minor_cov=2/0	new_cov=21/15	polymorphism_frequency=9.474e-01	polymorphism_score=-5.1	prediction=consensus	ref_cov=0/0	total_cov=23/15
RA	6850	.	1	1269458	0	G	A	bias_e_value=2109140	bias_p_value=1	consensus_score=97.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=22/15	major_frequency=9.737e-01	minor_base=G	minor_cov=1/0	new_cov=22/15	polymorphism_frequency=9.737e-01	polymorphism_score=-5.9	prediction=consensus	ref_cov=1/0	total_cov=23/15
RA	6851	.	1	1269466	0	C	A	consensus_score=129.0	frequency=1	major_base=A	major_cov=25/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/21
RA	6852	.	1	1269497	0	T	G	consensus_score=151.3	frequency=1	major_base=G	major_cov=30/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/24
RA	6853	.	1	1269498	0	A	G	consensus_score=149.1	frequency=1	major_base=G	major_cov=30/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/24
RA	6854	.	1	1269525	0	G	A	consensus_score=151.2	frequency=1	major_base=A	major_cov=32/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/26
RA	6855	.	1	1269527	1	.	T	consensus_score=141.9	frequency=1	major_base=T	major_cov=29/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/25
RA	6856	.	1	1269532	0	C	G	bias_e_value=2109140	bias_p_value=1	consensus_score=132.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=28/25	major_frequency=9.815e-01	minor_base=T	minor_cov=1/0	new_cov=28/25	polymorphism_frequency=9.815e-01	polymorphism_score=-6.1	prediction=consensus	ref_cov=0/0	total_cov=29/25
RA	6857	.	1	1269533	0	C	A	consensus_score=146.5	frequency=1	major_base=A	major_cov=29/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/25
RA	6858	.	1	1269536	0	A	T	consensus_score=139.1	frequency=1	major_base=T	major_cov=29/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/25
RA	6859	.	1	1269537	0	A	T	consensus_score=141.4	frequency=1	major_base=T	major_cov=29/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/25
RA	6860	.	1	1269539	1	.	T	consensus_score=151.4	frequency=1	major_base=T	major_cov=29/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/25
RA	6861	.	1	1269540	0	G	C	consensus_score=147.4	frequency=1	major_base=C	major_cov=29/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/25
RA	6862	.	1	1269541	0	G	A	consensus_score=140.2	frequency=1	major_base=A	major_cov=29/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/25
RA	6863	.	1	1269651	0	A	G	bias_e_value=1598950	bias_p_value=0.758104	consensus_reject=FREQUENCY_CUTOFF	consensus_score=67.2	fisher_strand_p_value=0.454243	frequency=3.802e-01	ks_quality_p_value=0.860624	major_base=A	major_cov=37/38	major_frequency=6.198e-01	minor_base=G	minor_cov=19/27	new_cov=19/27	polymorphism_frequency=3.802e-01	polymorphism_score=96.1	prediction=polymorphism	ref_cov=37/38	total_cov=56/65
RA	6864	.	1	1269657	0	C	A	bias_e_value=1008.97	bias_p_value=0.000478377	consensus_reject=FREQUENCY_CUTOFF	consensus_score=109.9	fisher_strand_p_value=0.558641	frequency=3.565e-01	ks_quality_p_value=7.75143e-05	major_base=C	major_cov=36/38	major_frequency=6.435e-01	minor_base=A	minor_cov=17/24	new_cov=17/24	polymorphism_frequency=3.565e-01	polymorphism_score=101.1	prediction=polymorphism	ref_cov=36/38	total_cov=53/62
RA	6865	.	1	1269663	0	T	C	bias_e_value=1224210	bias_p_value=0.580428	consensus_reject=FREQUENCY_CUTOFF	consensus_score=70.5	fisher_strand_p_value=0.33888	frequency=3.684e-01	ks_quality_p_value=0.703923	major_base=T	major_cov=36/36	major_frequency=6.316e-01	minor_base=C	minor_cov=17/25	new_cov=17/25	polymorphism_frequency=3.684e-01	polymorphism_score=87.8	prediction=polymorphism	ref_cov=36/36	total_cov=53/61
RA	6866	.	1	1269666	0	A	G	bias_e_value=1456580	bias_p_value=0.690601	consensus_reject=FREQUENCY_CUTOFF	consensus_score=65.3	fisher_strand_p_value=0.33888	frequency=3.684e-01	ks_quality_p_value=0.959891	major_base=A	major_cov=36/36	major_frequency=6.316e-01	minor_base=G	minor_cov=17/25	new_cov=17/25	polymorphism_frequency=3.684e-01	polymorphism_score=89.1	prediction=polymorphism	ref_cov=36/36	total_cov=53/61
RA	6867	.	1	1269672	0	A	G	bias_e_value=1469320	bias_p_value=0.696645	consensus_reject=FREQUENCY_CUTOFF	consensus_score=75.5	fisher_strand_p_value=0.33071	frequency=3.652e-01	ks_quality_p_value=1	major_base=A	major_cov=36/37	major_frequency=6.348e-01	minor_base=G	minor_cov=16/26	new_cov=16/26	polymorphism_frequency=3.652e-01	polymorphism_score=85.3	prediction=polymorphism	ref_cov=36/37	total_cov=52/63
RA	6868	.	1	1269678	0	A	T	bias_e_value=138889	bias_p_value=0.065851	consensus_reject=FREQUENCY_CUTOFF	consensus_score=108.9	fisher_strand_p_value=0.246406	frequency=3.684e-01	ks_quality_p_value=0.0494141	major_base=A	major_cov=36/36	major_frequency=6.316e-01	minor_base=T	minor_cov=16/26	new_cov=16/26	polymorphism_frequency=3.684e-01	polymorphism_score=126.9	prediction=polymorphism	ref_cov=36/36	total_cov=52/62
RA	6869	.	1	1269684	0	A	C	bias_e_value=907246	bias_p_value=0.430149	consensus_reject=FREQUENCY_CUTOFF	consensus_score=96.1	fisher_strand_p_value=0.172898	frequency=3.596e-01	ks_quality_p_value=0.854145	major_base=A	major_cov=37/36	major_frequency=6.404e-01	minor_base=C	minor_cov=15/26	new_cov=15/26	polymorphism_frequency=3.596e-01	polymorphism_score=107.0	prediction=polymorphism	ref_cov=37/36	total_cov=52/62
RA	6870	.	1	1269686	0	G	A	bias_e_value=980127	bias_p_value=0.464704	consensus_reject=FREQUENCY_CUTOFF	consensus_score=107.3	fisher_strand_p_value=0.173557	frequency=3.504e-01	ks_quality_p_value=0.958407	major_base=G	major_cov=39/37	major_frequency=6.496e-01	minor_base=A	minor_cov=15/26	new_cov=15/26	polymorphism_frequency=3.504e-01	polymorphism_score=77.5	prediction=polymorphism	ref_cov=39/37	total_cov=55/63
RA	6871	.	1	1269690	0	A	T	bias_e_value=1011920	bias_p_value=0.47978	consensus_reject=FREQUENCY_CUTOFF	consensus_score=127.9	fisher_strand_p_value=0.182901	frequency=3.559e-01	ks_quality_p_value=0.956052	major_base=A	major_cov=39/37	major_frequency=6.441e-01	minor_base=T	minor_cov=16/26	new_cov=16/26	polymorphism_frequency=3.559e-01	polymorphism_score=126.5	prediction=polymorphism	ref_cov=39/37	total_cov=55/63
RA	6872	.	1	1272116	0	T	G	bias_e_value=1124850	bias_p_value=0.533321	consensus_score=145.5	fisher_strand_p_value=0.472727	frequency=1	ks_quality_p_value=0.438272	major_base=G	major_cov=29/25	major_frequency=9.818e-01	minor_base=.	minor_cov=0/1	new_cov=29/25	polymorphism_frequency=9.818e-01	polymorphism_score=-3.1	prediction=consensus	ref_cov=0/0	total_cov=29/26
RA	6873	.	1	1272122	0	G	T	consensus_score=145.6	frequency=1	major_base=T	major_cov=29/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/26
RA	6874	.	1	1272598	0	A	C	consensus_score=152.6	frequency=1	major_base=C	major_cov=30/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/27
RA	6875	.	1	1273713	0	G	A	bias_e_value=1759700	bias_p_value=0.834322	consensus_score=71.5	fisher_strand_p_value=0.482759	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=13/15	major_frequency=9.655e-01	minor_base=C	minor_cov=1/0	new_cov=13/15	polymorphism_frequency=9.655e-01	polymorphism_score=-5.9	prediction=consensus	ref_cov=0/0	total_cov=14/15
RA	6876	.	1	1274014	0	G	A	consensus_score=217.0	frequency=1	major_base=A	major_cov=42/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/37
RA	6877	.	1	1275208	0	A	G	consensus_score=212.1	frequency=1	major_base=G	major_cov=41/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/33
RA	6878	.	1	1275662	0	C	T	bias_e_value=3113.94	bias_p_value=0.0014764	consensus_reject=FREQUENCY_CUTOFF	consensus_score=50.3	fisher_strand_p_value=0.000150644	frequency=3.091e-01	ks_quality_p_value=1	major_base=C	major_cov=19/19	major_frequency=6.909e-01	minor_base=T	minor_cov=17/0	new_cov=17/0	polymorphism_frequency=3.091e-01	polymorphism_score=12.3	prediction=polymorphism	ref_cov=19/19	total_cov=36/19
RA	6879	.	1	1275683	0	T	G	bias_e_value=1.89064e-07	bias_p_value=8.96401e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=19.5	fisher_strand_p_value=1.16216e-08	frequency=5.741e-01	ks_quality_p_value=2.23013e-07	major_base=G	major_cov=31/0	major_frequency=5.741e-01	minor_base=T	minor_cov=7/16	new_cov=31/0	polymorphism_frequency=5.741e-01	polymorphism_score=55.7	prediction=polymorphism	ref_cov=7/16	total_cov=38/16
RA	6880	.	1	1276451	0	A	G	consensus_score=196.4	frequency=1	major_base=G	major_cov=38/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/30
RA	6881	.	1	1279220	0	A	G	consensus_score=162.1	frequency=1	major_base=G	major_cov=27/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/31
RA	6882	.	1	1280968	0	A	G	consensus_score=179.8	frequency=1	major_base=G	major_cov=30/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/33
RA	6883	.	1	1281458	0	A	G	consensus_score=222.1	frequency=1	major_base=G	major_cov=38/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/40
RA	6884	.	1	1281844	0	T	C	bias_e_value=1771560	bias_p_value=0.839945	consensus_score=145.8	fisher_strand_p_value=0.490566	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=25/27	major_frequency=9.811e-01	minor_base=A	minor_cov=1/0	new_cov=25/27	polymorphism_frequency=9.811e-01	polymorphism_score=-6.4	prediction=consensus	ref_cov=0/0	total_cov=26/27
RA	6885	.	1	1282757	0	A	G	consensus_score=159.4	frequency=1	major_base=G	major_cov=30/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/27
RA	6886	.	1	1283097	0	G	A	consensus_score=124.7	frequency=1	major_base=A	major_cov=25/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/21
RA	6887	.	1	1283406	0	T	C	consensus_score=145.4	frequency=1	major_base=C	major_cov=20/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/31
RA	6888	.	1	1284824	0	T	C	consensus_score=174.7	frequency=1	major_base=C	major_cov=28/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/37
RA	6889	.	1	1284953	0	A	C	consensus_score=157.7	frequency=1	major_base=C	major_cov=17/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/38
RA	6890	.	1	1285635	0	G	T	consensus_score=174.8	frequency=1	major_base=T	major_cov=31/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/34
RA	6891	.	1	1286479	0	G	A	bias_e_value=2109140	bias_p_value=1	consensus_score=129.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=20/28	major_frequency=9.796e-01	minor_base=G	minor_cov=0/1	new_cov=20/28	polymorphism_frequency=9.796e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=20/29
RA	6892	.	1	1286610	0	T	C	consensus_score=148.0	frequency=1	major_base=C	major_cov=22/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/30
RA	6893	.	1	1286766	0	T	C	consensus_score=179.6	frequency=1	major_base=C	major_cov=30/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/36
RA	6894	.	1	1287913	0	G	A	consensus_score=192.7	frequency=1	major_base=A	major_cov=30/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/41
RA	6895	.	1	1288247	0	C	T	consensus_score=213.8	frequency=1	major_base=T	major_cov=38/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/40
RA	6896	.	1	1288584	0	C	T	consensus_score=152.5	frequency=1	major_base=T	major_cov=22/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/35
RA	6897	.	1	1289021	0	G	A	consensus_score=145.9	frequency=1	major_base=A	major_cov=26/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/29
RA	6898	.	1	1289612	0	A	G	consensus_score=162.5	frequency=1	major_base=G	major_cov=30/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/29
RA	6899	.	1	1290333	0	C	T	consensus_score=85.6	frequency=1	major_base=T	major_cov=18/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/16
RA	6900	.	1	1290343	0	A	G	consensus_score=87.4	frequency=1	major_base=G	major_cov=16/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/16
RA	6901	.	1	1290420	0	C	.	consensus_score=84.3	frequency=1	major_base=.	major_cov=12/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/9
RA	6902	.	1	1290977	0	A	G	consensus_score=233.8	frequency=1	major_base=G	major_cov=39/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/44
RA	6903	.	1	1291448	0	A	G	consensus_score=212.7	frequency=1	major_base=G	major_cov=36/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/41
RA	6904	.	1	1292383	0	T	G	consensus_score=213.6	frequency=1	major_base=G	major_cov=48/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/29
RA	6905	.	1	1294239	0	G	T	consensus_score=166.0	frequency=1	major_base=T	major_cov=24/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/37
RA	6906	.	1	1294371	0	T	C	consensus_score=256.9	frequency=1	major_base=C	major_cov=48/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/42
RA	6907	.	1	1294788	0	C	T	consensus_score=197.4	frequency=1	major_base=T	major_cov=34/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/39
RA	6908	.	1	1294880	0	T	C	consensus_score=179.4	frequency=1	major_base=C	major_cov=39/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/26
RA	6909	.	1	1295182	0	C	T	consensus_score=189.8	frequency=1	major_base=T	major_cov=30/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/37
RA	6910	.	1	1295364	0	C	A	consensus_score=196.2	frequency=1	major_base=A	major_cov=33/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/36
RA	6911	.	1	1295414	0	C	A	consensus_score=193.1	frequency=1	major_base=A	major_cov=31/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/38
RA	6912	.	1	1297207	0	G	A	consensus_score=209.7	frequency=1	major_base=A	major_cov=31/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/42
RA	6913	.	1	1298651	0	T	C	consensus_score=218.7	frequency=1	major_base=C	major_cov=36/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/40
RA	6914	.	1	1299549	0	A	G	consensus_score=196.4	frequency=1	major_base=G	major_cov=33/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/35
RA	6915	.	1	1300811	0	G	T	bias_e_value=0.169584	bias_p_value=8.04043e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=30.0	fisher_strand_p_value=3.95122e-09	frequency=3.889e-01	ks_quality_p_value=1	major_base=G	major_cov=1/21	major_frequency=6.111e-01	minor_base=T	minor_cov=14/0	new_cov=14/0	polymorphism_frequency=3.889e-01	polymorphism_score=23.5	prediction=polymorphism	ref_cov=1/21	total_cov=15/21
RA	6916	.	1	1300823	0	G	A	bias_e_value=110013	bias_p_value=0.0521602	consensus_score=72.2	fisher_strand_p_value=0.00925047	frequency=1	ks_quality_p_value=0.990521	major_base=A	major_cov=10/20	major_frequency=8.571e-01	minor_base=C	minor_cov=5/0	new_cov=10/20	polymorphism_frequency=8.571e-01	polymorphism_score=-2.1	prediction=consensus	ref_cov=0/0	total_cov=15/20
RA	6917	.	1	1301176	0	T	C	consensus_score=158.0	frequency=1	major_base=C	major_cov=30/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/28
RA	6918	.	1	1301714	0	T	C	consensus_score=191.2	frequency=1	major_base=C	major_cov=39/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/28
RA	6919	.	1	1305407	1	.	C	bias_e_value=1074580	bias_p_value=0.509485	consensus_score=182.9	fisher_strand_p_value=0.192547	frequency=1	ks_quality_p_value=0.99916	major_base=C	major_cov=29/39	major_frequency=9.714e-01	minor_base=.	minor_cov=2/0	new_cov=29/39	polymorphism_frequency=9.714e-01	polymorphism_score=-2.6	prediction=consensus	ref_cov=2/0	total_cov=32/39
RA	6920	.	1	1305436	0	C	T	consensus_score=181.6	frequency=1	major_base=T	major_cov=30/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/35
RA	6921	.	1	1305511	0	G	C	consensus_score=180.9	frequency=1	major_base=C	major_cov=34/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/30
RA	6922	.	1	1305738	0	G	A	consensus_score=149.2	frequency=1	major_base=A	major_cov=30/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/25
RA	6923	.	1	1305778	0	A	G	consensus_score=133.2	frequency=1	major_base=G	major_cov=29/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/21
RA	6924	.	1	1305833	0	A	G	consensus_score=135.4	frequency=1	major_base=G	major_cov=28/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/22
RA	6925	.	1	1306632	0	T	C	consensus_score=158.3	frequency=1	major_base=C	major_cov=26/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/32
RA	6926	.	1	1307035	0	T	G	consensus_score=91.8	frequency=1	major_base=G	major_cov=14/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/20
RA	6927	.	1	1307149	0	G	A	consensus_score=66.5	frequency=1	major_base=A	major_cov=16/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/11
RA	6928	.	1	1307293	0	G	T	bias_e_value=2042570	bias_p_value=0.968436	consensus_reject=FREQUENCY_CUTOFF	consensus_score=149.1	fisher_strand_p_value=0.782893	frequency=2.237e-01	ks_quality_p_value=0.970125	major_base=G	major_cov=24/35	major_frequency=7.763e-01	minor_base=T	minor_cov=6/11	new_cov=6/11	polymorphism_frequency=2.237e-01	polymorphism_score=36.1	prediction=polymorphism	ref_cov=24/35	total_cov=30/46
RA	6929	.	1	1307338	0	A	.	consensus_score=259.6	frequency=1	major_base=.	major_cov=26/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/36
RA	6930	.	1	1307339	0	A	.	bias_e_value=1660700	bias_p_value=0.787381	consensus_score=194.8	fisher_strand_p_value=0.439452	frequency=1	ks_quality_p_value=0.963724	major_base=.	major_cov=22/33	major_frequency=8.871e-01	minor_base=A	minor_cov=4/3	new_cov=22/33	polymorphism_frequency=8.871e-01	polymorphism_score=20.8	prediction=consensus	ref_cov=4/3	total_cov=26/36
RA	6931	.	1	1307829	0	G	A	consensus_score=148.9	frequency=1	major_base=A	major_cov=16/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/38
RA	6932	.	1	1308096	0	C	A	consensus_score=41.4	frequency=1	major_base=A	major_cov=5/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/12
RA	6933	.	1	1308115	0	C	T	consensus_score=34.9	frequency=1	major_base=T	major_cov=5/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/10
RA	6934	.	1	1308175	0	G	A	consensus_score=75.4	frequency=1	major_base=A	major_cov=14/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/15
RA	6935	.	1	1308578	0	A	G	consensus_score=92.0	frequency=1	major_base=G	major_cov=15/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/18
RA	6936	.	1	1309431	0	A	C	consensus_score=23.8	deleted=1	frequency=1	major_base=C	major_cov=4/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/6
RA	6937	.	1	1309456	0	G	A	consensus_score=27.6	deleted=1	frequency=1	major_base=A	major_cov=7/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/5
RA	6938	.	1	1311897	0	T	C	consensus_score=197.9	frequency=1	major_base=C	major_cov=40/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/32
RA	6939	.	1	1311985	0	T	C	consensus_score=146.2	frequency=1	major_base=C	major_cov=27/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/27
RA	6940	.	1	1311988	0	A	C	consensus_score=152.2	frequency=1	major_base=C	major_cov=27/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/27
RA	6941	.	1	1312407	0	A	G	bias_e_value=1501760	bias_p_value=0.712026	consensus_score=223.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.344881	major_base=G	major_cov=40/39	major_frequency=9.875e-01	minor_base=.	minor_cov=1/0	new_cov=40/39	polymorphism_frequency=9.875e-01	polymorphism_score=-3.3	prediction=consensus	ref_cov=0/0	total_cov=41/39
RA	6942	.	1	1313459	0	A	T	consensus_score=263.7	frequency=1	major_base=T	major_cov=46/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/51
RA	6943	.	1	1314556	0	A	C	consensus_score=197.8	frequency=1	major_base=C	major_cov=34/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/38
RA	6944	.	1	1315288	0	A	C	consensus_score=209.8	frequency=1	major_base=C	major_cov=34/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/40
RA	6945	.	1	1316863	0	C	T	consensus_score=206.3	frequency=1	major_base=T	major_cov=37/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/40
RA	6946	.	1	1324726	0	T	G	consensus_score=83.0	frequency=1	major_base=G	major_cov=10/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/20
RA	6947	.	1	1325938	0	C	A	consensus_score=90.2	frequency=1	major_base=A	major_cov=18/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/17
RA	6948	.	1	1326592	0	C	T	consensus_score=193.8	frequency=1	major_base=T	major_cov=39/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/33
RA	6949	.	1	1326806	0	C	T	consensus_score=148.5	frequency=1	major_base=T	major_cov=25/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/30
RA	6950	.	1	1328775	0	T	C	consensus_score=137.2	frequency=1	major_base=C	major_cov=24/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/24
RA	6951	.	1	1329901	0	G	T	consensus_score=22.2	deleted=1	frequency=1	major_base=T	major_cov=8/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/2
RA	6952	.	1	1330303	0	A	.	consensus_score=80.9	frequency=1	major_base=.	major_cov=8/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/12
RA	6953	.	1	1330304	0	G	.	consensus_score=80.9	frequency=1	major_base=.	major_cov=8/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/12
RA	6954	.	1	1330305	0	G	.	consensus_score=80.9	frequency=1	major_base=.	major_cov=8/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/12
RA	6955	.	1	1330306	0	C	.	consensus_score=80.9	frequency=1	major_base=.	major_cov=8/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/12
RA	6956	.	1	1330307	0	A	.	consensus_score=80.9	frequency=1	major_base=.	major_cov=8/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/12
RA	6957	.	1	1330308	0	A	.	consensus_score=80.9	frequency=1	major_base=.	major_cov=8/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/12
RA	6958	.	1	1330309	0	G	.	consensus_score=80.9	frequency=1	major_base=.	major_cov=8/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/12
RA	6959	.	1	1330310	0	G	.	consensus_score=80.9	frequency=1	major_base=.	major_cov=8/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/12
RA	6960	.	1	1330311	0	C	.	consensus_score=80.9	frequency=1	major_base=.	major_cov=8/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/12
RA	6961	.	1	1330312	0	A	.	consensus_score=80.9	frequency=1	major_base=.	major_cov=8/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/12
RA	6962	.	1	1330843	0	A	G	consensus_score=224.6	frequency=1	major_base=G	major_cov=36/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/45
RA	6963	.	1	1332871	0	A	G	consensus_score=202.0	frequency=1	major_base=G	major_cov=39/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/31
RA	6964	.	1	1333680	0	G	T	bias_e_value=2109140	bias_p_value=1	consensus_score=146.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=28/27	major_frequency=9.821e-01	minor_base=C	minor_cov=1/0	new_cov=28/27	polymorphism_frequency=9.821e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/27
RA	6965	.	1	1334391	0	A	G	consensus_score=129.6	frequency=1	major_base=G	major_cov=23/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/24
RA	6966	.	1	1334570	0	A	G	bias_e_value=2109140	bias_p_value=1	consensus_score=60.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=12/12	major_frequency=9.600e-01	minor_base=A	minor_cov=0/1	new_cov=12/12	polymorphism_frequency=9.600e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=12/13
RA	6967	.	1	1335674	0	C	A	consensus_score=107.1	frequency=1	major_base=A	major_cov=16/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/23
RA	6968	.	1	1336028	1	.	C	bias_e_value=2106430	bias_p_value=0.998715	consensus_score=184.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.94973	major_base=C	major_cov=38/30	major_frequency=9.855e-01	minor_base=.	minor_cov=1/0	new_cov=38/30	polymorphism_frequency=9.855e-01	polymorphism_score=-3.1	prediction=consensus	ref_cov=1/0	total_cov=39/30
RA	6969	.	1	1336137	0	C	T	consensus_score=139.7	frequency=1	major_base=T	major_cov=30/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/22
RA	6970	.	1	1336345	0	A	G	consensus_score=132.7	frequency=1	major_base=G	major_cov=28/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/20
RA	6971	.	1	1336346	0	G	A	consensus_score=127.5	frequency=1	major_base=A	major_cov=28/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/20
RA	6972	.	1	1337813	0	G	A	consensus_score=158.2	frequency=1	major_base=A	major_cov=23/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/35
RA	6973	.	1	1339239	0	A	G	consensus_score=194.2	frequency=1	major_base=G	major_cov=33/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/37
RA	6974	.	1	1339705	0	T	C	consensus_score=189.1	frequency=1	major_base=C	major_cov=30/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/35
RA	6975	.	1	1342207	0	G	A	consensus_score=161.5	frequency=1	major_base=A	major_cov=27/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/32
RA	6976	.	1	1342849	0	T	C	consensus_score=113.9	frequency=1	major_base=C	major_cov=12/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/31
RA	6977	.	1	1343954	0	G	A	consensus_score=267.5	frequency=1	major_base=A	major_cov=57/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/35
RA	6978	.	1	1346583	0	A	G	consensus_score=185.8	frequency=1	major_base=G	major_cov=29/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/35
RA	6979	.	1	1347567	0	T	C	consensus_score=98.3	frequency=1	major_base=C	major_cov=17/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/21
RA	6980	.	1	1347839	0	G	A	consensus_score=88.3	frequency=1	major_base=A	major_cov=16/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/18
RA	6981	.	1	1347892	0	G	A	bias_e_value=2109140	bias_p_value=1	consensus_score=88.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=17/18	major_frequency=9.722e-01	minor_base=G	minor_cov=0/1	new_cov=17/18	polymorphism_frequency=9.722e-01	polymorphism_score=-5.9	prediction=consensus	ref_cov=0/1	total_cov=17/19
RA	6982	.	1	1348027	0	G	A	consensus_score=165.0	frequency=1	major_base=A	major_cov=32/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/31
RA	6983	.	1	1348286	0	A	G	consensus_score=23.4	frequency=1	major_base=G	major_cov=14/0	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/0	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/0
RA	6984	.	1	1350243	0	A	G	consensus_score=215.6	frequency=1	major_base=G	major_cov=42/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/36
RA	6985	.	1	1352739	0	A	G	consensus_score=144.8	frequency=1	major_base=G	major_cov=26/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/31
RA	6986	.	1	1353069	0	C	A	bias_e_value=1475850	bias_p_value=0.699739	consensus_score=140.0	fisher_strand_p_value=0.339623	frequency=1	ks_quality_p_value=0.982021	major_base=A	major_cov=17/35	major_frequency=9.811e-01	minor_base=C	minor_cov=1/0	new_cov=17/35	polymorphism_frequency=9.811e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=1/0	total_cov=18/35
RA	6987	.	1	1355001	0	G	C	consensus_score=191.6	frequency=1	major_base=C	major_cov=42/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/28
RA	6988	.	1	1355734	1	.	G	bias_e_value=101547	bias_p_value=0.0481461	consensus_score=84.9	fisher_strand_p_value=0.00831601	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=20/13	major_frequency=8.462e-01	minor_base=.	minor_cov=0/6	new_cov=20/13	polymorphism_frequency=8.462e-01	polymorphism_score=12.8	prediction=consensus	ref_cov=0/6	total_cov=20/19
RA	6989	.	1	1355734	2	.	G	bias_e_value=380011	bias_p_value=0.180173	consensus_score=82.7	fisher_strand_p_value=0.043596	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=19/13	major_frequency=8.205e-01	minor_base=.	minor_cov=1/6	new_cov=19/13	polymorphism_frequency=8.205e-01	polymorphism_score=16.8	prediction=consensus	ref_cov=1/6	total_cov=20/19
RA	6990	.	1	1355801	0	A	G	consensus_score=129.6	frequency=1	major_base=G	major_cov=20/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/26
RA	6991	.	1	1355833	0	A	G	consensus_score=140.4	frequency=1	major_base=G	major_cov=20/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/30
RA	6992	.	1	1356080	0	C	T	consensus_score=184.0	frequency=1	major_base=T	major_cov=36/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/29
RA	6993	.	1	1357035	0	A	G	consensus_score=233.4	frequency=1	major_base=G	major_cov=38/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/43
RA	6994	.	1	1357857	0	T	C	consensus_score=89.3	frequency=1	major_base=C	major_cov=17/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/18
RA	6995	.	1	1357969	0	C	T	consensus_score=174.8	frequency=1	major_base=T	major_cov=37/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/24
RA	6996	.	1	1359298	0	A	G	consensus_score=233.7	frequency=1	major_base=G	major_cov=40/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/44
RA	6997	.	1	1359337	0	G	T	consensus_score=209.6	frequency=1	major_base=T	major_cov=36/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/41
RA	6998	.	1	1360585	0	G	A	consensus_score=220.5	frequency=1	major_base=A	major_cov=37/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/43
RA	6999	.	1	1360808	0	A	C	consensus_score=302.3	frequency=1	major_base=C	major_cov=46/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/59
RA	7000	.	1	1362656	0	G	A	consensus_score=211.0	frequency=1	major_base=A	major_cov=43/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/36
RA	7001	.	1	1362807	0	T	G	consensus_score=245.3	frequency=1	major_base=G	major_cov=42/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/46
RA	7002	.	1	1363075	0	G	A	consensus_score=261.5	frequency=1	major_base=A	major_cov=48/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/48
RA	7003	.	1	1363192	0	G	A	consensus_score=251.3	frequency=1	major_base=A	major_cov=45/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/48
RA	7004	.	1	1364290	0	G	A	consensus_score=258.5	frequency=1	major_base=A	major_cov=45/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/46
RA	7005	.	1	1364297	0	T	C	consensus_score=251.0	frequency=1	major_base=C	major_cov=44/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/46
RA	7006	.	1	1364618	0	G	A	consensus_score=223.1	frequency=1	major_base=A	major_cov=51/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/31
RA	7007	.	1	1364815	0	G	A	consensus_score=224.0	frequency=1	major_base=A	major_cov=41/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/40
RA	7008	.	1	1366403	0	T	C	consensus_score=267.4	frequency=1	major_base=C	major_cov=49/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/47
RA	7009	.	1	1368395	0	A	G	consensus_score=204.0	frequency=1	major_base=G	major_cov=27/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/46
RA	7010	.	1	1368449	0	A	G	consensus_score=190.9	frequency=1	major_base=G	major_cov=26/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/43
RA	7011	.	1	1370325	0	C	T	bias_e_value=2109140	bias_p_value=1	consensus_score=238.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999739	major_base=T	major_cov=51/36	major_frequency=9.886e-01	minor_base=G	minor_cov=1/0	new_cov=51/36	polymorphism_frequency=9.886e-01	polymorphism_score=-6.5	prediction=consensus	ref_cov=0/0	total_cov=52/36
RA	7012	.	1	1373207	0	C	A	bias_e_value=18857	bias_p_value=0.00894059	consensus_score=124.5	fisher_strand_p_value=0.00115109	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=17/34	major_frequency=8.793e-01	minor_base=G	minor_cov=7/0	new_cov=17/34	polymorphism_frequency=8.793e-01	polymorphism_score=-5.4	prediction=consensus	ref_cov=0/0	total_cov=24/34
RA	7013	.	1	1374745	0	G	A	bias_e_value=1.02147e-05	bias_p_value=4.84306e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=121.4	fisher_strand_p_value=1.58944e-13	frequency=2.658e-01	ks_quality_p_value=1	major_base=G	major_cov=7/51	major_frequency=7.342e-01	minor_base=A	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.658e-01	polymorphism_score=13.3	prediction=polymorphism	ref_cov=7/51	total_cov=28/51
RA	7014	.	1	1374832	0	A	G	bias_e_value=1553130	bias_p_value=0.736381	consensus_score=185.2	fisher_strand_p_value=0.394737	frequency=1	ks_quality_p_value=0.93354	major_base=G	major_cov=29/46	major_frequency=9.868e-01	minor_base=C	minor_cov=1/0	new_cov=29/46	polymorphism_frequency=9.868e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/46
RA	7015	.	1	1375896	0	C	T	consensus_score=206.7	frequency=1	major_base=T	major_cov=39/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/38
RA	7016	.	1	1376239	0	T	C	consensus_score=211.7	frequency=1	major_base=C	major_cov=30/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/47
RA	7017	.	1	1376726	0	T	C	consensus_score=207.0	frequency=1	major_base=C	major_cov=40/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/34
RA	7018	.	1	1380762	0	C	T	consensus_score=211.6	frequency=1	major_base=T	major_cov=36/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/43
RA	7019	.	1	1382878	0	T	G	consensus_score=263.5	frequency=1	major_base=G	major_cov=53/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/38
RA	7020	.	1	1383393	0	C	T	consensus_score=240.9	frequency=1	major_base=T	major_cov=48/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/37
RA	7021	.	1	1383396	0	A	C	consensus_score=239.0	frequency=1	major_base=C	major_cov=48/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/37
RA	7022	.	1	1383464	0	G	A	consensus_score=269.0	frequency=1	major_base=A	major_cov=57/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/37
RA	7023	.	1	1387036	0	A	G	bias_e_value=2109140	bias_p_value=1	consensus_score=263.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999781	major_base=G	major_cov=47/48	major_frequency=9.896e-01	minor_base=A	minor_cov=1/0	new_cov=47/48	polymorphism_frequency=9.896e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=48/48
RA	7024	.	1	1387223	0	C	A	consensus_score=279.1	frequency=1	major_base=A	major_cov=34/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/63
RA	7025	.	1	1387290	0	C	T	bias_e_value=576388	bias_p_value=0.273281	consensus_score=262.7	fisher_strand_p_value=0.354839	frequency=1	ks_quality_p_value=0.215744	major_base=T	major_cov=32/60	major_frequency=9.892e-01	minor_base=.	minor_cov=1/0	new_cov=32/60	polymorphism_frequency=9.892e-01	polymorphism_score=-3.5	prediction=consensus	ref_cov=0/0	total_cov=33/60
RA	7026	.	1	1388136	0	A	G	consensus_score=267.0	frequency=1	major_base=G	major_cov=54/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/43
RA	7027	.	1	1388424	0	A	G	consensus_score=187.9	frequency=1	major_base=G	major_cov=32/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/36
RA	7028	.	1	1388526	0	C	T	consensus_score=181.5	frequency=1	major_base=T	major_cov=31/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/36
RA	7029	.	1	1390604	0	A	G	consensus_score=220.6	frequency=1	major_base=G	major_cov=36/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/43
RA	7030	.	1	1391055	0	A	G	consensus_score=218.6	frequency=1	major_base=G	major_cov=45/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/34
RA	7031	.	1	1391442	0	C	T	bias_e_value=787478	bias_p_value=0.373364	consensus_score=137.7	fisher_strand_p_value=0.119497	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=35/17	major_frequency=9.630e-01	minor_base=C	minor_cov=0/2	new_cov=35/17	polymorphism_frequency=9.630e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/2	total_cov=35/21
RA	7032	.	1	1391711	0	A	G	bias_e_value=2109140	bias_p_value=1	consensus_score=173.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=32/31	major_frequency=9.844e-01	minor_base=A	minor_cov=1/0	new_cov=32/31	polymorphism_frequency=9.844e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=33/31
RA	7033	.	1	1392216	0	A	G	consensus_score=156.7	frequency=1	major_base=G	major_cov=30/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/25
RA	7034	.	1	1393150	0	T	G	consensus_score=243.2	frequency=1	major_base=G	major_cov=42/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/45
RA	7035	.	1	1393841	0	G	A	bias_e_value=2109140	bias_p_value=1	consensus_score=208.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999675	major_base=A	major_cov=48/30	major_frequency=9.873e-01	minor_base=G	minor_cov=1/0	new_cov=48/30	polymorphism_frequency=9.873e-01	polymorphism_score=-5.0	prediction=consensus	ref_cov=1/0	total_cov=49/30
RA	7036	.	1	1394638	0	T	G	consensus_score=222.7	frequency=1	major_base=G	major_cov=28/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/49
RA	7037	.	1	1394693	0	G	A	bias_e_value=2109140	bias_p_value=1	consensus_score=239.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=40/48	major_frequency=9.888e-01	minor_base=T	minor_cov=0/1	new_cov=40/48	polymorphism_frequency=9.888e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/49
RA	7038	.	1	1399247	0	A	G	consensus_score=238.7	frequency=1	major_base=G	major_cov=41/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/45
RA	7039	.	1	1399327	0	G	C	consensus_score=220.6	frequency=1	major_base=C	major_cov=36/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/44
RA	7040	.	1	1399505	0	G	A	consensus_score=179.4	frequency=1	major_base=A	major_cov=22/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/45
RA	7041	.	1	1401290	0	G	A	consensus_score=131.3	frequency=1	major_base=A	major_cov=24/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/25
RA	7042	.	1	1401549	0	G	A	consensus_score=84.1	frequency=1	major_base=A	major_cov=21/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/13
RA	7043	.	1	1402589	0	C	T	consensus_score=229.4	frequency=1	major_base=T	major_cov=53/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/35
RA	7044	.	1	1405209	0	C	A	consensus_score=93.2	frequency=1	major_base=A	major_cov=15/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/21
RA	7045	.	1	1405941	0	A	G	consensus_score=241.0	frequency=1	major_base=G	major_cov=41/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/43
RA	7046	.	1	1406149	0	C	T	bias_e_value=2109140	bias_p_value=1	consensus_score=165.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=36/26	major_frequency=9.841e-01	minor_base=G	minor_cov=1/0	new_cov=36/26	polymorphism_frequency=9.841e-01	polymorphism_score=-7.2	prediction=consensus	ref_cov=0/0	total_cov=37/26
RA	7047	.	1	1406163	0	C	T	consensus_score=173.5	frequency=1	major_base=T	major_cov=37/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/27
RA	7048	.	1	1406186	0	T	C	consensus_score=163.0	frequency=1	major_base=C	major_cov=32/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/26
RA	7049	.	1	1406841	0	C	A	consensus_score=198.4	frequency=1	major_base=A	major_cov=34/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/36
RA	7050	.	1	1406930	0	G	A	consensus_score=199.6	frequency=1	major_base=A	major_cov=33/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/40
RA	7051	.	1	1407911	0	C	T	consensus_score=134.2	frequency=1	major_base=T	major_cov=26/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/25
RA	7052	.	1	1408256	0	C	T	consensus_score=127.6	frequency=1	major_base=T	major_cov=21/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/27
RA	7053	.	1	1409001	0	G	T	consensus_score=234.9	frequency=1	major_base=T	major_cov=48/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/38
RA	7054	.	1	1409832	0	C	T	bias_e_value=1686950	bias_p_value=0.799825	consensus_score=249.0	fisher_strand_p_value=0.44086	frequency=1	ks_quality_p_value=0.994173	major_base=T	major_cov=40/52	major_frequency=9.892e-01	minor_base=.	minor_cov=1/0	new_cov=40/52	polymorphism_frequency=9.892e-01	polymorphism_score=-3.5	prediction=consensus	ref_cov=0/0	total_cov=41/52
RA	7055	.	1	1409886	0	T	.	consensus_score=368.1	frequency=1	major_base=.	major_cov=37/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/49
RA	7056	.	1	1410283	0	A	G	consensus_score=274.2	frequency=1	major_base=G	major_cov=45/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/51
RA	7057	.	1	1413663	0	A	G	consensus_score=193.5	frequency=1	major_base=G	major_cov=33/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/38
RA	7058	.	1	1413841	0	T	C	consensus_score=248.9	frequency=1	major_base=C	major_cov=42/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/48
RA	7059	.	1	1413995	0	A	G	consensus_score=117.8	frequency=1	major_base=G	major_cov=20/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/24
RA	7060	.	1	1414784	0	G	T	bias_e_value=2104310	bias_p_value=0.997709	consensus_score=50.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.93308	major_base=T	major_cov=14/7	major_frequency=9.545e-01	minor_base=C	minor_cov=1/0	new_cov=14/7	polymorphism_frequency=9.545e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=0/0	total_cov=15/7
RA	7061	.	1	1415019	0	A	G	consensus_score=120.1	frequency=1	major_base=G	major_cov=22/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/21
RA	7062	.	1	1417660	0	A	G	consensus_score=182.8	frequency=1	major_base=G	major_cov=31/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/38
RA	7063	.	1	1418445	0	C	T	consensus_score=167.1	frequency=1	major_base=T	major_cov=34/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/29
RA	7064	.	1	1419277	0	T	C	consensus_score=238.0	frequency=1	major_base=C	major_cov=36/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/48
RA	7065	.	1	1420277	0	A	G	consensus_score=183.4	frequency=1	major_base=G	major_cov=29/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/37
RA	7066	.	1	1420512	0	T	C	consensus_score=176.5	frequency=1	major_base=C	major_cov=24/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/41
RA	7067	.	1	1420515	0	A	C	consensus_score=185.4	frequency=1	major_base=C	major_cov=24/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/41
RA	7068	.	1	1421804	0	T	C	consensus_score=209.7	frequency=1	major_base=C	major_cov=37/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/38
RA	7069	.	1	1423156	0	A	C	consensus_score=149.2	frequency=1	major_base=C	major_cov=25/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/31
RA	7070	.	1	1423934	0	C	A	consensus_score=172.9	frequency=1	major_base=A	major_cov=28/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/36
RA	7071	.	1	1424049	0	A	G	consensus_score=185.7	frequency=1	major_base=G	major_cov=31/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/36
RA	7072	.	1	1425025	0	C	A	consensus_score=230.5	frequency=1	major_base=A	major_cov=42/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/41
RA	7073	.	1	1425183	0	T	G	consensus_score=244.0	frequency=1	major_base=G	major_cov=51/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/38
RA	7074	.	1	1425419	0	T	C	consensus_score=167.0	frequency=1	major_base=C	major_cov=31/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/30
RA	7075	.	1	1425545	0	C	T	consensus_score=154.1	frequency=1	major_base=T	major_cov=30/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/27
RA	7076	.	1	1428085	0	C	T	consensus_score=11.0	deleted=1	frequency=1	major_base=T	major_cov=4/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/2
RA	7077	.	1	1428088	0	G	C	consensus_score=11.0	deleted=1	frequency=1	major_base=C	major_cov=4/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/2
RA	7078	.	1	1428133	0	A	G	consensus_score=50.3	deleted=1	frequency=1	major_base=G	major_cov=9/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/10
RA	7079	.	1	1428136	0	G	A	consensus_score=46.1	deleted=1	frequency=1	major_base=A	major_cov=9/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/10
RA	7080	.	1	1428198	0	G	T	consensus_score=74.2	frequency=1	major_base=T	major_cov=11/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/18
RA	7081	.	1	1428201	0	C	T	consensus_score=72.8	frequency=1	major_base=T	major_cov=11/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/18
RA	7082	.	1	1428205	0	C	T	consensus_score=72.3	frequency=1	major_base=T	major_cov=11/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/18
RA	7083	.	1	1428209	0	A	G	consensus_score=76.6	frequency=1	major_base=G	major_cov=11/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/18
RA	7084	.	1	1428234	0	C	T	consensus_score=75.9	frequency=1	major_base=T	major_cov=11/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/19
RA	7085	.	1	1428339	0	C	T	consensus_score=40.8	frequency=1	major_base=T	major_cov=4/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/13
RA	7086	.	1	1428341	0	C	T	consensus_score=39.8	frequency=1	major_base=T	major_cov=4/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/13
RA	7087	.	1	1428367	0	T	A	consensus_score=27.7	frequency=1	major_base=A	major_cov=4/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/8
RA	7088	.	1	1428372	0	C	T	consensus_score=24.6	frequency=1	major_base=T	major_cov=4/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/7
RA	7089	.	1	1428395	0	C	T	consensus_score=25.0	frequency=1	major_base=T	major_cov=5/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/6
RA	7090	.	1	1428518	0	G	C	consensus_score=146.6	frequency=1	major_base=C	major_cov=30/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/23
RA	7091	.	1	1428722	0	C	T	consensus_score=165.3	frequency=1	major_base=T	major_cov=33/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/28
RA	7092	.	1	1428736	0	C	T	consensus_score=163.5	frequency=1	major_base=T	major_cov=34/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/28
RA	7093	.	1	1428860	0	G	A	consensus_score=154.5	frequency=1	major_base=A	major_cov=33/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/22
RA	7094	.	1	1428865	0	T	C	consensus_score=159.0	frequency=1	major_base=C	major_cov=32/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/25
RA	7095	.	1	1429144	0	T	C	consensus_score=187.6	frequency=1	major_base=C	major_cov=28/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/37
RA	7096	.	1	1429150	0	G	A	consensus_score=178.0	frequency=1	major_base=A	major_cov=27/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/39
RA	7097	.	1	1429156	0	T	G	consensus_score=187.5	frequency=1	major_base=G	major_cov=28/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/37
RA	7098	.	1	1429159	0	G	T	consensus_score=175.3	frequency=1	major_base=T	major_cov=28/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/37
RA	7099	.	1	1429168	0	C	T	consensus_score=184.4	frequency=1	major_base=T	major_cov=28/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/37
RA	7100	.	1	1429192	0	C	A	consensus_score=169.2	frequency=1	major_base=A	major_cov=27/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/36
RA	7101	.	1	1429201	0	A	G	consensus_score=164.9	frequency=1	major_base=G	major_cov=26/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/33
RA	7102	.	1	1429207	0	A	G	consensus_score=171.1	frequency=1	major_base=G	major_cov=27/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/35
RA	7103	.	1	1429225	0	C	A	consensus_score=139.0	frequency=1	major_base=A	major_cov=24/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/29
RA	7104	.	1	1429228	0	T	C	consensus_score=152.7	frequency=1	major_base=C	major_cov=24/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/29
RA	7105	.	1	1429229	0	C	T	consensus_score=141.4	frequency=1	major_base=T	major_cov=24/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/29
RA	7106	.	1	1429233	0	G	A	consensus_score=140.0	frequency=1	major_base=A	major_cov=24/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/29
RA	7107	.	1	1429234	0	T	C	consensus_score=153.2	frequency=1	major_base=C	major_cov=24/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/29
RA	7108	.	1	1429240	0	C	A	consensus_score=164.0	frequency=1	major_base=A	major_cov=29/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/32
RA	7109	.	1	1429246	0	T	A	consensus_score=172.3	frequency=1	major_base=A	major_cov=29/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/32
RA	7110	.	1	1429252	0	A	G	consensus_score=180.5	frequency=1	major_base=G	major_cov=29/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/34
RA	7111	.	1	1429264	0	C	T	consensus_score=192.0	frequency=1	major_base=T	major_cov=29/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/42
RA	7112	.	1	1429273	0	C	G	consensus_score=214.0	frequency=1	major_base=G	major_cov=31/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/43
RA	7113	.	1	1429291	0	T	C	consensus_score=206.8	frequency=1	major_base=C	major_cov=32/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/40
RA	7114	.	1	1429300	0	C	T	consensus_score=191.2	frequency=1	major_base=T	major_cov=31/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/40
RA	7115	.	1	1429315	0	C	T	consensus_score=176.4	frequency=1	major_base=T	major_cov=29/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/37
RA	7116	.	1	1429317	0	G	A	consensus_score=177.4	frequency=1	major_base=A	major_cov=29/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/37
RA	7117	.	1	1429387	0	G	A	consensus_score=113.4	frequency=1	major_base=A	major_cov=20/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/22
RA	7118	.	1	1429449	0	C	T	consensus_score=80.5	frequency=1	major_base=T	major_cov=14/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/18
RA	7119	.	1	1429495	0	C	G	consensus_score=41.7	deleted=1	frequency=1	major_base=G	major_cov=7/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/10
RA	7120	.	1	1431993	0	T	A	consensus_score=17.2	deleted=1	frequency=1	major_base=A	major_cov=4/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/4
RA	7121	.	1	1432157	0	C	A	consensus_score=70.8	frequency=1	major_base=A	major_cov=10/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/18
RA	7122	.	1	1432815	0	T	C	consensus_score=147.0	frequency=1	major_base=C	major_cov=25/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/29
RA	7123	.	1	1433757	0	A	G	consensus_score=153.8	frequency=1	major_base=G	major_cov=28/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/25
RA	7124	.	1	1434248	0	G	T	bias_e_value=1660060	bias_p_value=0.787077	consensus_score=31.6	fisher_strand_p_value=0.4375	frequency=1	ks_quality_p_value=0.967216	major_base=T	major_cov=9/6	major_frequency=9.375e-01	minor_base=C	minor_cov=0/1	new_cov=9/6	polymorphism_frequency=9.375e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=0/0	total_cov=9/7
RA	7125	.	1	1437196	0	C	A	consensus_score=214.0	frequency=1	major_base=A	major_cov=38/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/37
RA	7126	.	1	1437674	0	T	C	consensus_score=184.1	frequency=1	major_base=C	major_cov=41/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/25
RA	7127	.	1	1441216	0	G	A	consensus_score=235.3	frequency=1	major_base=A	major_cov=45/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/43
RA	7128	.	1	1443318	0	T	C	consensus_score=206.4	frequency=1	major_base=C	major_cov=40/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/34
RA	7129	.	1	1444816	0	A	C	consensus_score=231.1	frequency=1	major_base=C	major_cov=40/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/41
RA	7130	.	1	1447755	0	T	C	consensus_score=186.5	frequency=1	major_base=C	major_cov=33/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/35
RA	7131	.	1	1448029	0	A	G	consensus_score=238.5	frequency=1	major_base=G	major_cov=33/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/51
RA	7132	.	1	1448939	0	C	A	consensus_score=253.4	frequency=1	major_base=A	major_cov=39/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/52
RA	7133	.	1	1449092	0	A	G	consensus_score=230.4	frequency=1	major_base=G	major_cov=33/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/52
RA	7134	.	1	1450748	1	.	A	consensus_score=78.0	frequency=1	major_base=A	major_cov=8/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/21
RA	7135	.	1	1450954	0	A	G	consensus_score=232.9	frequency=1	major_base=G	major_cov=47/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/34
RA	7136	.	1	1451011	0	G	A	consensus_score=225.6	frequency=1	major_base=A	major_cov=50/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/33
RA	7137	.	1	1453454	0	A	G	consensus_score=249.2	frequency=1	major_base=G	major_cov=32/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/56
RA	7138	.	1	1459226	0	C	T	consensus_score=284.5	frequency=1	major_base=T	major_cov=58/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/42
RA	7139	.	1	1459425	0	T	G	bias_e_value=2109140	bias_p_value=1	consensus_score=253.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999045	major_base=G	major_cov=43/48	major_frequency=9.891e-01	minor_base=T	minor_cov=0/1	new_cov=43/48	polymorphism_frequency=9.891e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=43/49
RA	7140	.	1	1459946	0	C	T	bias_e_value=1755300	bias_p_value=0.832234	consensus_score=267.8	fisher_strand_p_value=0.48	frequency=1	ks_quality_p_value=0.999798	major_base=T	major_cov=47/52	major_frequency=9.900e-01	minor_base=G	minor_cov=1/0	new_cov=47/52	polymorphism_frequency=9.900e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/52
RA	7141	.	1	1460453	0	G	A	consensus_score=233.3	frequency=1	major_base=A	major_cov=42/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/41
RA	7142	.	1	1462169	0	C	T	consensus_score=311.3	frequency=1	major_base=T	major_cov=63/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/50
RA	7143	.	1	1462236	0	T	C	consensus_score=288.9	frequency=1	major_base=C	major_cov=53/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/51
RA	7144	.	1	1462679	0	C	T	consensus_score=214.4	frequency=1	major_base=T	major_cov=36/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/44
RA	7145	.	1	1463233	0	A	G	consensus_score=203.5	frequency=1	major_base=G	major_cov=35/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/37
RA	7146	.	1	1463507	0	C	T	bias_e_value=1717870	bias_p_value=0.814489	consensus_score=116.2	fisher_strand_p_value=0.456522	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=20/25	major_frequency=9.783e-01	minor_base=C	minor_cov=1/0	new_cov=20/25	polymorphism_frequency=9.783e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=21/25
RA	7147	.	1	1464493	0	A	C	consensus_score=102.3	frequency=1	major_base=C	major_cov=20/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/18
RA	7148	.	1	1464898	0	A	G	consensus_score=201.6	frequency=1	major_base=G	major_cov=28/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/43
RA	7149	.	1	1465402	0	A	G	consensus_score=195.0	frequency=1	major_base=G	major_cov=38/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/31
RA	7150	.	1	1466521	0	A	G	consensus_score=24.8	frequency=1	major_base=G	major_cov=7/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/4
RA	7151	.	1	1467239	0	A	C	bias_e_value=795036	bias_p_value=0.376947	consensus_score=212.0	fisher_strand_p_value=0.435897	frequency=1	ks_quality_p_value=0.278022	major_base=C	major_cov=33/44	major_frequency=9.872e-01	minor_base=A	minor_cov=1/0	new_cov=33/44	polymorphism_frequency=9.872e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=1/0	total_cov=34/44
RA	7152	.	1	1467734	0	A	G	consensus_score=233.4	frequency=1	major_base=G	major_cov=43/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/41
RA	7153	.	1	1469748	0	G	A	consensus_score=228.8	frequency=1	major_base=A	major_cov=47/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/37
RA	7154	.	1	1470301	0	T	C	consensus_score=242.1	frequency=1	major_base=C	major_cov=36/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/48
RA	7155	.	1	1471016	0	G	A	consensus_score=297.7	frequency=1	major_base=A	major_cov=54/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/53
RA	7156	.	1	1471284	0	G	A	consensus_score=255.6	frequency=1	major_base=A	major_cov=51/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/39
RA	7157	.	1	1471286	0	T	C	consensus_score=258.1	frequency=1	major_base=C	major_cov=51/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/39
RA	7158	.	1	1471356	0	C	A	consensus_score=228.5	frequency=1	major_base=A	major_cov=50/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/34
RA	7159	.	1	1474873	0	G	A	consensus_score=272.1	frequency=1	major_base=A	major_cov=46/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/53
RA	7160	.	1	1475087	0	C	T	consensus_score=196.6	frequency=1	major_base=T	major_cov=37/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/35
RA	7161	.	1	1475803	0	G	T	consensus_score=315.9	frequency=1	major_base=T	major_cov=66/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/45
RA	7162	.	1	1479364	0	C	T	consensus_score=216.7	frequency=1	major_base=T	major_cov=33/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/46
RA	7163	.	1	1480807	0	G	A	consensus_score=291.9	frequency=1	major_base=A	major_cov=58/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/50
RA	7164	.	1	1481430	0	A	G	consensus_score=43.5	frequency=1	major_base=G	major_cov=3/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/18
RA	7165	.	1	1483367	0	G	C	consensus_score=40.6	deleted=1	frequency=1	major_base=C	major_cov=12/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/4
RA	7166	.	1	1483370	0	A	C	consensus_score=40.0	deleted=1	frequency=1	major_base=C	major_cov=12/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/4
RA	7167	.	1	1483376	0	T	C	consensus_score=51.8	deleted=1	frequency=1	major_base=C	major_cov=14/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/6
RA	7168	.	1	1483379	0	A	T	consensus_score=52.4	deleted=1	frequency=1	major_base=T	major_cov=14/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/6
RA	7169	.	1	1483396	0	A	G	consensus_score=71.5	frequency=1	major_base=G	major_cov=18/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/8
RA	7170	.	1	1483403	0	G	T	bias_e_value=2109140	bias_p_value=0.999997	consensus_score=71.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.99754	major_base=T	major_cov=18/10	major_frequency=9.655e-01	minor_base=A	minor_cov=1/0	new_cov=18/10	polymorphism_frequency=9.655e-01	polymorphism_score=-3.4	prediction=consensus	ref_cov=0/0	total_cov=19/10
RA	7171	.	1	1483412	0	G	A	consensus_score=86.5	frequency=1	major_base=A	major_cov=23/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/10
RA	7172	.	1	1483415	0	G	C	consensus_score=90.5	frequency=1	major_base=C	major_cov=23/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/10
RA	7173	.	1	1483424	0	G	A	consensus_score=95.1	frequency=1	major_base=A	major_cov=24/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/13
RA	7174	.	1	1483430	0	T	C	consensus_score=103.3	frequency=1	major_base=C	major_cov=25/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/13
RA	7175	.	1	1483433	0	G	A	consensus_score=104.8	frequency=1	major_base=A	major_cov=25/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/13
RA	7176	.	1	1483439	0	C	G	consensus_score=100.8	frequency=1	major_base=G	major_cov=25/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/13
RA	7177	.	1	1483442	0	G	A	consensus_score=107.6	frequency=1	major_base=A	major_cov=25/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/13
RA	7178	.	1	1483445	0	C	G	consensus_score=100.9	frequency=1	major_base=G	major_cov=25/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/13
RA	7179	.	1	1483454	0	A	C	consensus_score=140.3	frequency=1	major_base=C	major_cov=32/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/18
RA	7180	.	1	1483460	0	G	T	consensus_score=133.8	frequency=1	major_base=T	major_cov=32/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/18
RA	7181	.	1	1483463	0	T	C	consensus_score=141.4	frequency=1	major_base=C	major_cov=32/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/18
RA	7182	.	1	1483472	0	T	C	consensus_score=138.4	frequency=1	major_base=C	major_cov=32/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/18
RA	7183	.	1	1483481	0	A	G	consensus_score=135.8	frequency=1	major_base=G	major_cov=32/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/18
RA	7184	.	1	1483484	0	C	.	consensus_score=207.2	frequency=1	major_base=.	major_cov=32/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/18
RA	7185	.	1	1483487	1	.	C	consensus_score=137.0	frequency=1	major_base=C	major_cov=32/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/18
RA	7186	.	1	1483493	0	G	C	consensus_score=138.1	frequency=1	major_base=C	major_cov=32/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/18
RA	7187	.	1	1483494	0	G	T	consensus_score=138.4	frequency=1	major_base=T	major_cov=32/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/18
RA	7188	.	1	1483495	0	A	G	consensus_score=142.7	frequency=1	major_base=G	major_cov=32/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/18
RA	7189	.	1	1483496	0	A	C	consensus_score=139.1	frequency=1	major_base=C	major_cov=32/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/18
RA	7190	.	1	1483683	0	T	C	consensus_score=249.3	frequency=1	major_base=C	major_cov=38/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/52
RA	7191	.	1	1483713	0	T	C	consensus_score=224.4	frequency=1	major_base=C	major_cov=39/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/46
RA	7192	.	1	1483856	0	C	G	consensus_score=274.1	frequency=1	major_base=G	major_cov=53/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/46
RA	7193	.	1	1483859	0	A	G	consensus_score=272.9	frequency=1	major_base=G	major_cov=53/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/46
RA	7194	.	1	1483862	0	A	G	consensus_score=277.7	frequency=1	major_base=G	major_cov=53/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/46
RA	7195	.	1	1483874	0	A	T	consensus_score=280.9	frequency=1	major_base=T	major_cov=52/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/47
RA	7196	.	1	1483892	0	A	G	consensus_score=274.8	frequency=1	major_base=G	major_cov=49/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/50
RA	7197	.	1	1483895	0	T	G	consensus_score=276.7	frequency=1	major_base=G	major_cov=49/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/50
RA	7198	.	1	1483898	0	C	G	consensus_score=276.4	frequency=1	major_base=G	major_cov=49/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/50
RA	7199	.	1	1483908	0	C	A	consensus_score=281.4	frequency=1	major_base=A	major_cov=51/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/51
RA	7200	.	1	1483916	0	A	G	consensus_score=279.5	frequency=1	major_base=G	major_cov=48/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/49
RA	7201	.	1	1483922	0	A	G	consensus_score=251.3	frequency=1	major_base=G	major_cov=41/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/48
RA	7202	.	1	1483924	0	C	T	consensus_score=243.3	frequency=1	major_base=T	major_cov=41/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/48
RA	7203	.	1	1483925	0	C	T	consensus_score=241.7	frequency=1	major_base=T	major_cov=41/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/48
RA	7204	.	1	1483928	0	A	G	consensus_score=257.5	frequency=1	major_base=G	major_cov=41/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/48
RA	7205	.	1	1483940	0	G	A	bias_e_value=2109140	bias_p_value=1	consensus_score=277.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=44/55	major_frequency=9.900e-01	minor_base=G	minor_cov=0/1	new_cov=44/55	polymorphism_frequency=9.900e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=44/56
RA	7206	.	1	1483982	0	T	G	consensus_score=274.4	frequency=1	major_base=G	major_cov=45/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/52
RA	7207	.	1	1484024	0	T	C	consensus_score=255.3	frequency=1	major_base=C	major_cov=45/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/46
RA	7208	.	1	1484027	0	C	G	consensus_score=258.6	frequency=1	major_base=G	major_cov=45/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/46
RA	7209	.	1	1484048	0	T	C	consensus_score=271.1	frequency=1	major_base=C	major_cov=50/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/47
RA	7210	.	1	1484051	0	A	G	consensus_score=278.0	frequency=1	major_base=G	major_cov=50/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/47
RA	7211	.	1	1484075	0	C	G	consensus_score=260.2	frequency=1	major_base=G	major_cov=45/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/46
RA	7212	.	1	1484078	0	C	G	consensus_score=253.1	frequency=1	major_base=G	major_cov=45/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/46
RA	7213	.	1	1484081	0	C	A	bias_e_value=2109140	bias_p_value=1	consensus_score=255.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=45/45	major_frequency=9.890e-01	minor_base=G	minor_cov=0/1	new_cov=45/45	polymorphism_frequency=9.890e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/46
RA	7214	.	1	1484090	0	A	G	consensus_score=243.8	frequency=1	major_base=G	major_cov=43/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/42
RA	7215	.	1	1484096	0	A	G	consensus_score=225.2	frequency=1	major_base=G	major_cov=42/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/40
RA	7216	.	1	1484111	0	A	C	consensus_score=243.0	frequency=1	major_base=C	major_cov=44/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/42
RA	7217	.	1	1484114	0	T	C	consensus_score=245.5	frequency=1	major_base=C	major_cov=44/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/42
RA	7218	.	1	1484120	0	G	T	consensus_score=241.0	frequency=1	major_base=T	major_cov=45/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/42
RA	7219	.	1	1484132	0	G	A	consensus_score=242.3	frequency=1	major_base=A	major_cov=44/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/42
RA	7220	.	1	1484147	0	G	C	consensus_score=244.9	frequency=1	major_base=C	major_cov=45/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/43
RA	7221	.	1	1484149	0	G	A	consensus_score=248.8	frequency=1	major_base=A	major_cov=45/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/43
RA	7222	.	1	1484150	0	G	C	consensus_score=240.0	frequency=1	major_base=C	major_cov=45/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/43
RA	7223	.	1	1484153	0	A	G	consensus_score=241.6	frequency=1	major_base=G	major_cov=45/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/43
RA	7224	.	1	1484162	0	A	G	consensus_score=267.1	frequency=1	major_base=G	major_cov=51/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/46
RA	7225	.	1	1484171	0	C	T	bias_e_value=2109140	bias_p_value=1	consensus_score=262.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999159	major_base=T	major_cov=51/46	major_frequency=9.898e-01	minor_base=C	minor_cov=1/0	new_cov=51/46	polymorphism_frequency=9.898e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=52/46
RA	7226	.	1	1484177	0	T	A	consensus_score=258.1	frequency=1	major_base=A	major_cov=51/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/44
RA	7227	.	1	1484189	0	A	G	consensus_score=274.0	frequency=1	major_base=G	major_cov=50/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/48
RA	7228	.	1	1484210	0	T	G	consensus_score=294.9	frequency=1	major_base=G	major_cov=50/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/54
RA	7229	.	1	1484270	0	C	G	consensus_score=225.4	frequency=1	major_base=G	major_cov=33/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/49
RA	7230	.	1	1484279	0	G	C	consensus_score=221.7	frequency=1	major_base=C	major_cov=33/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/47
RA	7231	.	1	1484288	0	T	C	consensus_score=201.6	frequency=1	major_base=C	major_cov=29/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/45
RA	7232	.	1	1484290	0	G	C	consensus_score=208.5	frequency=1	major_base=C	major_cov=29/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/45
RA	7233	.	1	1484291	0	G	A	consensus_score=200.3	frequency=1	major_base=A	major_cov=29/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/45
RA	7234	.	1	1484296	0	C	A	consensus_score=201.1	frequency=1	major_base=A	major_cov=29/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/45
RA	7235	.	1	1484302	0	G	C	consensus_score=213.6	frequency=1	major_base=C	major_cov=29/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/45
RA	7236	.	1	1484306	0	T	C	consensus_score=214.0	frequency=1	major_base=C	major_cov=29/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/45
RA	7237	.	1	1484309	0	T	C	consensus_score=213.9	frequency=1	major_base=C	major_cov=29/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/45
RA	7238	.	1	1484312	0	G	T	consensus_score=212.2	frequency=1	major_base=T	major_cov=29/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/45
RA	7239	.	1	1484315	0	T	C	consensus_score=199.5	frequency=1	major_base=C	major_cov=29/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/45
RA	7240	.	1	1484318	0	C	T	consensus_score=211.9	frequency=1	major_base=T	major_cov=29/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/45
RA	7241	.	1	1484320	0	A	C	consensus_score=200.4	frequency=1	major_base=C	major_cov=29/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/45
RA	7242	.	1	1484321	0	A	C	consensus_score=201.1	frequency=1	major_base=C	major_cov=29/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/45
RA	7243	.	1	1484324	0	T	C	consensus_score=215.2	frequency=1	major_base=C	major_cov=29/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/45
RA	7244	.	1	1484333	0	A	G	consensus_score=219.8	frequency=1	major_base=G	major_cov=31/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/46
RA	7245	.	1	1484353	0	G	C	consensus_score=206.1	frequency=1	major_base=C	major_cov=31/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/44
RA	7246	.	1	1484361	0	G	C	consensus_score=200.7	frequency=1	major_base=C	major_cov=28/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/42
RA	7247	.	1	1484362	0	C	A	consensus_score=190.9	frequency=1	major_base=A	major_cov=28/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/42
RA	7248	.	1	1484371	0	C	G	consensus_score=190.9	frequency=1	major_base=G	major_cov=27/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/41
RA	7249	.	1	1484382	0	A	.	consensus_score=207.6	frequency=1	major_base=.	major_cov=17/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/32
RA	7250	.	1	1484383	0	C	.	consensus_score=207.6	frequency=1	major_base=.	major_cov=17/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/32
RA	7251	.	1	1484384	0	G	.	consensus_score=207.6	frequency=1	major_base=.	major_cov=17/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/32
RA	7252	.	1	1484403	0	T	A	consensus_score=161.1	frequency=1	major_base=A	major_cov=20/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/39
RA	7253	.	1	1484416	0	C	G	consensus_score=150.8	frequency=1	major_base=G	major_cov=18/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/37
RA	7254	.	1	1484417	0	C	A	consensus_score=155.5	frequency=1	major_base=A	major_cov=18/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/37
RA	7255	.	1	1484429	0	C	T	consensus_score=159.1	frequency=1	major_base=T	major_cov=22/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/35
RA	7256	.	1	1484441	0	T	A	consensus_score=154.3	frequency=1	major_base=A	major_cov=23/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/34
RA	7257	.	1	1484453	0	G	A	consensus_score=143.1	frequency=1	major_base=A	major_cov=26/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/27
RA	7258	.	1	1484465	0	C	T	consensus_score=150.5	frequency=1	major_base=T	major_cov=27/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/28
RA	7259	.	1	1484474	0	G	A	consensus_score=152.6	frequency=1	major_base=A	major_cov=29/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/29
RA	7260	.	1	1484489	0	G	A	consensus_score=167.9	frequency=1	major_base=A	major_cov=34/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/29
RA	7261	.	1	1484498	0	C	G	consensus_score=180.7	frequency=1	major_base=G	major_cov=36/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/30
RA	7262	.	1	1484519	0	C	T	consensus_score=220.3	frequency=1	major_base=T	major_cov=42/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/37
RA	7263	.	1	1484523	0	T	C	consensus_score=219.1	frequency=1	major_base=C	major_cov=42/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/37
RA	7264	.	1	1484525	0	A	G	consensus_score=223.1	frequency=1	major_base=G	major_cov=42/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/37
RA	7265	.	1	1484555	0	C	T	consensus_score=249.8	frequency=1	major_base=T	major_cov=48/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/43
RA	7266	.	1	1484561	0	G	A	consensus_score=234.1	frequency=1	major_base=A	major_cov=43/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/43
RA	7267	.	1	1484602	0	T	C	consensus_score=278.0	frequency=1	major_base=C	major_cov=43/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/57
RA	7268	.	1	1484633	0	A	C	consensus_score=277.6	frequency=1	major_base=C	major_cov=45/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/54
RA	7269	.	1	1484678	0	C	T	bias_e_value=2109140	bias_p_value=1	consensus_score=278.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=50/49	major_frequency=9.900e-01	minor_base=C	minor_cov=1/0	new_cov=50/49	polymorphism_frequency=9.900e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=51/49
RA	7270	.	1	1484681	0	A	G	consensus_score=276.1	frequency=1	major_base=G	major_cov=51/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/49
RA	7271	.	1	1484687	0	C	T	consensus_score=251.1	frequency=1	major_base=T	major_cov=46/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/46
RA	7272	.	1	1484689	0	G	A	consensus_score=253.4	frequency=1	major_base=A	major_cov=46/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/46
RA	7273	.	1	1484690	0	G	A	consensus_score=248.2	frequency=1	major_base=A	major_cov=46/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/46
RA	7274	.	1	1484693	0	T	C	consensus_score=261.7	frequency=1	major_base=C	major_cov=46/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/46
RA	7275	.	1	1484699	0	T	A	bias_e_value=2109140	bias_p_value=1	consensus_score=246.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=49/48	major_frequency=9.898e-01	minor_base=G	minor_cov=0/1	new_cov=49/48	polymorphism_frequency=9.898e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/50
RA	7276	.	1	1484702	0	C	A	consensus_score=262.8	frequency=1	major_base=A	major_cov=49/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/50
RA	7277	.	1	1484714	0	T	G	consensus_score=283.8	frequency=1	major_base=G	major_cov=54/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/50
RA	7278	.	1	1484723	0	T	G	consensus_score=281.1	frequency=1	major_base=G	major_cov=51/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/50
RA	7279	.	1	1484735	0	A	G	bias_e_value=2106620	bias_p_value=0.998805	consensus_score=287.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.951516	major_base=G	major_cov=52/49	major_frequency=9.902e-01	minor_base=A	minor_cov=1/0	new_cov=52/49	polymorphism_frequency=9.902e-01	polymorphism_score=-5.3	prediction=consensus	ref_cov=1/0	total_cov=53/49
RA	7280	.	1	1484946	0	T	G	consensus_score=313.9	frequency=1	major_base=G	major_cov=53/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/61
RA	7281	.	1	1485004	0	C	T	consensus_score=300.9	frequency=1	major_base=T	major_cov=55/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/52
RA	7282	.	1	1485106	0	G	A	consensus_score=253.2	frequency=1	major_base=A	major_cov=51/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/38
RA	7283	.	1	1485109	0	T	C	consensus_score=255.8	frequency=1	major_base=C	major_cov=51/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/38
RA	7284	.	1	1485122	0	A	G	consensus_score=250.9	frequency=1	major_base=G	major_cov=54/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/32
RA	7285	.	1	1485158	0	C	G	consensus_score=245.1	frequency=1	major_base=G	major_cov=61/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/28
RA	7286	.	1	1485159	0	T	A	consensus_score=256.0	frequency=1	major_base=A	major_cov=61/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/28
RA	7287	.	1	1485187	0	C	T	bias_e_value=1908340	bias_p_value=0.904794	consensus_score=253.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.596687	major_base=T	major_cov=60/32	major_frequency=9.892e-01	minor_base=A	minor_cov=1/0	new_cov=60/32	polymorphism_frequency=9.892e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=0/0	total_cov=61/32
RA	7288	.	1	1485199	0	G	A	bias_e_value=1571950	bias_p_value=0.745304	consensus_score=262.9	fisher_strand_p_value=0.377551	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=61/36	major_frequency=9.898e-01	minor_base=G	minor_cov=0/1	new_cov=61/36	polymorphism_frequency=9.898e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=61/37
RA	7289	.	1	1485220	0	C	A	bias_e_value=2107890	bias_p_value=0.999407	consensus_score=280.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.965762	major_base=A	major_cov=55/43	major_frequency=9.899e-01	minor_base=.	minor_cov=1/0	new_cov=55/43	polymorphism_frequency=9.899e-01	polymorphism_score=-3.5	prediction=consensus	ref_cov=0/0	total_cov=56/43
RA	7290	.	1	1485226	0	C	T	bias_e_value=1682320	bias_p_value=0.797633	consensus_score=284.9	fisher_strand_p_value=0.435644	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=57/43	major_frequency=9.901e-01	minor_base=A	minor_cov=0/1	new_cov=57/43	polymorphism_frequency=9.901e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/44
RA	7291	.	1	1485244	0	G	A	consensus_score=272.3	frequency=1	major_base=A	major_cov=51/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/48
RA	7292	.	1	1485259	0	A	G	consensus_score=286.6	frequency=1	major_base=G	major_cov=50/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/48
RA	7293	.	1	1485274	0	G	T	consensus_score=269.8	frequency=1	major_base=T	major_cov=46/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/51
RA	7294	.	1	1485337	0	G	A	consensus_score=228.3	frequency=1	major_base=A	major_cov=39/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/44
RA	7295	.	1	1485339	0	C	T	bias_e_value=2109090	bias_p_value=0.999973	consensus_score=223.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.99268	major_base=T	major_cov=39/43	major_frequency=9.880e-01	minor_base=A	minor_cov=0/1	new_cov=39/43	polymorphism_frequency=9.880e-01	polymorphism_score=-3.8	prediction=consensus	ref_cov=0/0	total_cov=39/44
RA	7296	.	1	1485343	0	G	C	consensus_score=229.9	frequency=1	major_base=C	major_cov=39/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/44
RA	7297	.	1	1485367	0	G	A	consensus_score=224.2	frequency=1	major_base=A	major_cov=39/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/44
RA	7298	.	1	1485388	0	C	.	consensus_score=377.3	frequency=1	major_base=.	major_cov=44/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/44
RA	7299	.	1	1485395	0	C	T	consensus_score=220.3	frequency=1	major_base=T	major_cov=38/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/43
RA	7300	.	1	1485396	0	T	C	consensus_score=231.1	frequency=1	major_base=C	major_cov=38/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/43
RA	7301	.	1	1485433	0	C	T	consensus_score=247.5	frequency=1	major_base=T	major_cov=47/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/43
RA	7302	.	1	1485439	0	A	G	consensus_score=254.1	frequency=1	major_base=G	major_cov=46/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/42
RA	7303	.	1	1485442	0	T	C	consensus_score=253.7	frequency=1	major_base=C	major_cov=46/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/42
RA	7304	.	1	1485493	0	T	C	consensus_score=287.1	frequency=1	major_base=C	major_cov=55/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/47
RA	7305	.	1	1485508	0	A	G	bias_e_value=2109140	bias_p_value=1	consensus_score=283.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999802	major_base=G	major_cov=53/47	major_frequency=9.901e-01	minor_base=A	minor_cov=1/0	new_cov=53/47	polymorphism_frequency=9.901e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=54/47
RA	7306	.	1	1485511	0	G	C	consensus_score=277.2	frequency=1	major_base=C	major_cov=54/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/47
RA	7307	.	1	1485526	0	G	T	consensus_score=301.6	frequency=1	major_base=T	major_cov=57/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/52
RA	7308	.	1	1485529	0	C	G	consensus_score=302.5	frequency=1	major_base=G	major_cov=57/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/52
RA	7309	.	1	1485540	0	A	C	bias_e_value=1315590	bias_p_value=0.623756	consensus_score=316.4	fisher_strand_p_value=0.482143	frequency=1	ks_quality_p_value=0.560374	major_base=C	major_cov=58/53	major_frequency=9.911e-01	minor_base=T	minor_cov=0/1	new_cov=58/53	polymorphism_frequency=9.911e-01	polymorphism_score=-5.7	prediction=consensus	ref_cov=0/0	total_cov=58/54
RA	7310	.	1	1485550	0	C	T	consensus_score=310.2	frequency=1	major_base=T	major_cov=60/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/52
RA	7311	.	1	1485595	0	C	T	consensus_score=254.2	frequency=1	major_base=T	major_cov=44/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/45
RA	7312	.	1	1485598	0	G	C	consensus_score=249.0	frequency=1	major_base=C	major_cov=44/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/45
RA	7313	.	1	1485631	0	G	A	consensus_score=207.5	frequency=1	major_base=A	major_cov=36/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/40
RA	7314	.	1	1485640	0	C	T	consensus_score=187.3	frequency=1	major_base=T	major_cov=34/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/35
RA	7315	.	1	1485652	0	G	A	consensus_score=168.9	frequency=1	major_base=A	major_cov=31/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/33
RA	7316	.	1	1485706	0	G	A	consensus_score=114.7	frequency=1	major_base=A	major_cov=19/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/23
RA	7317	.	1	1485709	0	G	A	consensus_score=113.7	frequency=1	major_base=A	major_cov=19/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/23
RA	7318	.	1	1485733	0	G	A	consensus_score=78.6	frequency=1	major_base=A	major_cov=14/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/16
RA	7319	.	1	1485745	0	G	A	consensus_score=65.8	frequency=1	major_base=A	major_cov=11/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/14
RA	7320	.	1	1485748	0	T	C	consensus_score=67.2	frequency=1	major_base=C	major_cov=11/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/14
RA	7321	.	1	1485763	0	G	A	consensus_score=56.3	frequency=1	major_base=A	major_cov=9/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/13
RA	7322	.	1	1486989	0	A	G	bias_e_value=1709040	bias_p_value=0.810301	consensus_score=231.6	fisher_strand_p_value=0.45122	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=36/45	major_frequency=9.878e-01	minor_base=A	minor_cov=1/0	new_cov=36/45	polymorphism_frequency=9.878e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=37/45
RA	7323	.	1	1487010	0	T	C	consensus_score=226.2	frequency=1	major_base=C	major_cov=38/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/43
RA	7324	.	1	1487302	0	A	G	consensus_score=265.1	frequency=1	major_base=G	major_cov=51/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/44
RA	7325	.	1	1487470	0	C	T	consensus_score=221.5	frequency=1	major_base=T	major_cov=45/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/33
RA	7326	.	1	1487613	0	G	.	consensus_score=293.9	frequency=1	major_base=.	major_cov=30/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/39
RA	7327	.	1	1490694	0	G	A	consensus_score=220.7	frequency=1	major_base=A	major_cov=45/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/33
RA	7328	.	1	1490751	0	A	G	consensus_score=222.7	frequency=1	major_base=G	major_cov=45/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/37
RA	7329	.	1	1491664	0	G	A	bias_e_value=12040.6	bias_p_value=0.00570877	consensus_score=194.7	fisher_strand_p_value=0.000689503	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=19/53	major_frequency=9.231e-01	minor_base=G	minor_cov=6/0	new_cov=19/53	polymorphism_frequency=9.231e-01	polymorphism_score=-4.9	prediction=consensus	ref_cov=6/0	total_cov=25/53
RA	7330	.	1	1493653	0	G	A	bias_e_value=1630860	bias_p_value=0.773235	consensus_score=207.1	fisher_strand_p_value=0.407407	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=48/32	major_frequency=9.877e-01	minor_base=G	minor_cov=0/1	new_cov=48/32	polymorphism_frequency=9.877e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=48/35
RA	7331	.	1	1494580	0	T	C	consensus_score=247.7	frequency=1	major_base=C	major_cov=44/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/45
RA	7332	.	1	1498236	0	G	T	consensus_score=250.8	frequency=1	major_base=T	major_cov=52/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/40
RA	7333	.	1	1499692	0	A	C	consensus_score=299.0	frequency=1	major_base=C	major_cov=57/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/46
RA	7334	.	1	1501482	0	T	C	bias_e_value=2109140	bias_p_value=1	consensus_score=250.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999756	major_base=C	major_cov=40/50	major_frequency=9.890e-01	minor_base=A	minor_cov=0/1	new_cov=40/50	polymorphism_frequency=9.890e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/51
RA	7335	.	1	1502134	0	A	G	consensus_score=337.8	frequency=1	major_base=G	major_cov=71/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=71/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=71/46
RA	7336	.	1	1502395	0	T	C	consensus_score=217.1	frequency=1	major_base=C	major_cov=38/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/38
RA	7337	.	1	1502887	0	G	A	consensus_score=281.9	frequency=1	major_base=A	major_cov=48/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/51
RA	7338	.	1	1503326	0	C	T	consensus_score=237.7	frequency=1	major_base=T	major_cov=45/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/42
RA	7339	.	1	1504737	0	T	C	consensus_score=282.6	frequency=1	major_base=C	major_cov=47/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/55
RA	7340	.	1	1505234	0	G	A	consensus_score=346.1	frequency=1	major_base=A	major_cov=76/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=76/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=76/51
RA	7341	.	1	1506397	0	T	A	consensus_score=218.9	frequency=1	major_base=A	major_cov=32/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/48
RA	7342	.	1	1506578	0	G	A	consensus_score=145.8	frequency=1	major_base=A	major_cov=28/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/25
RA	7343	.	1	1506710	0	G	A	consensus_score=58.5	frequency=1	major_base=A	major_cov=15/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/8
RA	7344	.	1	1507715	0	T	C	consensus_score=254.7	frequency=1	major_base=C	major_cov=44/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/47
RA	7345	.	1	1507829	0	C	T	consensus_score=242.1	frequency=1	major_base=T	major_cov=47/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/42
RA	7346	.	1	1508266	0	G	T	consensus_score=99.1	frequency=1	major_base=T	major_cov=16/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/19
RA	7347	.	1	1508289	0	T	C	consensus_score=101.5	frequency=1	major_base=C	major_cov=20/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/18
RA	7348	.	1	1508304	0	A	G	consensus_score=103.1	frequency=1	major_base=G	major_cov=21/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/16
RA	7349	.	1	1508549	0	C	A	consensus_score=244.1	frequency=1	major_base=A	major_cov=45/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/45
RA	7350	.	1	1509830	0	A	G	consensus_score=297.3	frequency=1	major_base=G	major_cov=53/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/53
RA	7351	.	1	1510242	0	G	A	consensus_score=152.0	frequency=1	major_base=A	major_cov=26/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/28
RA	7352	.	1	1510540	0	G	A	consensus_score=55.4	frequency=1	major_base=A	major_cov=10/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/12
RA	7353	.	1	1511736	0	C	A	bias_e_value=1.17135	bias_p_value=5.55365e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=152.2	fisher_strand_p_value=3.03294e-08	frequency=2.432e-01	ks_quality_p_value=1	major_base=C	major_cov=40/16	major_frequency=7.568e-01	minor_base=A	minor_cov=0/18	new_cov=0/18	polymorphism_frequency=2.432e-01	polymorphism_score=10.6	prediction=polymorphism	ref_cov=40/16	total_cov=40/34
RA	7354	.	1	1511768	0	G	A	bias_e_value=3.25985e-08	bias_p_value=1.54558e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=71.6	fisher_strand_p_value=4.24665e-16	frequency=3.951e-01	ks_quality_p_value=1	major_base=G	major_cov=42/7	major_frequency=6.049e-01	minor_base=A	minor_cov=0/32	new_cov=0/32	polymorphism_frequency=3.951e-01	polymorphism_score=27.0	prediction=polymorphism	ref_cov=42/7	total_cov=42/39
RA	7355	.	1	1511793	0	G	A	bias_e_value=0.00166629	bias_p_value=7.90033e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=92.5	fisher_strand_p_value=3.13689e-11	frequency=3.038e-01	ks_quality_p_value=1	major_base=G	major_cov=42/13	major_frequency=6.962e-01	minor_base=A	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=3.038e-01	polymorphism_score=17.7	prediction=polymorphism	ref_cov=42/13	total_cov=42/37
RA	7356	.	1	1512031	0	T	C	consensus_score=264.6	frequency=1	major_base=C	major_cov=48/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/49
RA	7357	.	1	1512423	0	G	A	bias_e_value=2109140	bias_p_value=1	consensus_score=276.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=47/57	major_frequency=9.905e-01	minor_base=G	minor_cov=0/1	new_cov=47/57	polymorphism_frequency=9.905e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=47/58
RA	7358	.	1	1513795	0	A	G	consensus_score=293.2	frequency=1	major_base=G	major_cov=50/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/55
RA	7359	.	1	1514689	0	G	C	consensus_score=209.7	frequency=1	major_base=C	major_cov=44/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/31
RA	7360	.	1	1515424	0	C	T	consensus_score=170.1	frequency=1	major_base=T	major_cov=33/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/30
RA	7361	.	1	1515541	0	A	G	bias_e_value=2109140	bias_p_value=1	consensus_score=185.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=22/44	major_frequency=9.851e-01	minor_base=C	minor_cov=0/1	new_cov=22/44	polymorphism_frequency=9.851e-01	polymorphism_score=-5.4	prediction=consensus	ref_cov=0/0	total_cov=22/45
RA	7362	.	1	1516760	0	T	C	consensus_score=192.5	frequency=1	major_base=C	major_cov=27/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/44
RA	7363	.	1	1517368	0	G	A	consensus_score=93.6	frequency=1	major_base=A	major_cov=16/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/20
RA	7364	.	1	1517626	0	A	G	consensus_score=224.5	frequency=1	major_base=G	major_cov=52/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/30
RA	7365	.	1	1518287	0	T	C	consensus_score=223.6	frequency=1	major_base=C	major_cov=26/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/52
RA	7366	.	1	1519779	0	A	C	consensus_score=183.5	frequency=1	major_base=C	major_cov=25/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/42
RA	7367	.	1	1520740	0	A	G	consensus_score=220.4	frequency=1	major_base=G	major_cov=34/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/45
RA	7368	.	1	1521006	0	A	G	consensus_score=278.7	frequency=1	major_base=G	major_cov=42/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/60
RA	7369	.	1	1524979	0	A	G	consensus_score=198.3	frequency=1	major_base=G	major_cov=33/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/36
RA	7370	.	1	1526034	0	A	G	consensus_score=219.1	frequency=1	major_base=G	major_cov=29/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/49
RA	7371	.	1	1526544	0	T	C	consensus_score=302.3	frequency=1	major_base=C	major_cov=46/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/63
RA	7372	.	1	1527139	0	A	G	consensus_score=135.1	frequency=1	major_base=G	major_cov=25/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/24
RA	7373	.	1	1527968	0	T	C	consensus_score=322.2	frequency=1	major_base=C	major_cov=57/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/58
RA	7374	.	1	1528252	0	C	T	consensus_score=289.8	frequency=1	major_base=T	major_cov=47/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/54
RA	7375	.	1	1528708	0	A	C	consensus_score=157.5	frequency=1	major_base=C	major_cov=33/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/26
RA	7376	.	1	1528750	0	G	A	consensus_score=213.2	frequency=1	major_base=A	major_cov=51/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/28
RA	7377	.	1	1531128	0	G	A	consensus_score=309.0	frequency=1	major_base=A	major_cov=59/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/49
RA	7378	.	1	1532623	0	G	.	consensus_score=351.6	frequency=1	major_base=.	major_cov=38/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/45
RA	7379	.	1	1532757	1	.	T	bias_e_value=2109140	bias_p_value=1	consensus_score=328.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=48/72	major_frequency=9.836e-01	minor_base=.	minor_cov=1/1	new_cov=48/72	polymorphism_frequency=9.836e-01	polymorphism_score=-2.0	prediction=consensus	ref_cov=1/1	total_cov=49/73
RA	7380	.	1	1534039	0	G	A	consensus_score=226.8	frequency=1	major_base=A	major_cov=30/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/51
RA	7381	.	1	1534414	0	T	C	consensus_score=189.3	frequency=1	major_base=C	major_cov=34/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/33
RA	7382	.	1	1535365	0	A	.	consensus_score=167.0	frequency=1	major_base=.	major_cov=21/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/19
RA	7383	.	1	1535586	0	A	G	consensus_score=241.0	frequency=1	major_base=G	major_cov=47/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/40
RA	7384	.	1	1535835	0	G	A	consensus_score=230.9	frequency=1	major_base=A	major_cov=49/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/31
RA	7385	.	1	1535903	0	T	C	consensus_score=181.3	frequency=1	major_base=C	major_cov=42/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/24
RA	7386	.	1	1536297	0	C	T	consensus_score=231.9	frequency=1	major_base=T	major_cov=47/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/35
RA	7387	.	1	1536305	0	T	C	consensus_score=231.6	frequency=1	major_base=C	major_cov=46/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/36
RA	7388	.	1	1536546	0	T	C	consensus_score=238.7	frequency=1	major_base=C	major_cov=26/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/56
RA	7389	.	1	1537599	0	A	G	consensus_score=285.1	frequency=1	major_base=G	major_cov=50/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/53
RA	7390	.	1	1539122	0	C	T	consensus_score=287.3	frequency=1	major_base=T	major_cov=47/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/57
RA	7391	.	1	1539416	0	A	C	consensus_score=213.0	frequency=1	major_base=C	major_cov=38/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/37
RA	7392	.	1	1539874	0	A	G	consensus_score=259.3	frequency=1	major_base=G	major_cov=47/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/43
RA	7393	.	1	1540390	0	T	C	consensus_score=317.4	frequency=1	major_base=C	major_cov=58/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/53
RA	7394	.	1	1540444	0	C	A	consensus_score=292.0	frequency=1	major_base=A	major_cov=49/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/54
RA	7395	.	1	1540893	0	T	G	consensus_score=202.4	frequency=1	major_base=G	major_cov=29/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/44
RA	7396	.	1	1541214	0	G	A	consensus_score=200.6	frequency=1	major_base=A	major_cov=30/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/44
RA	7397	.	1	1542408	0	G	A	consensus_score=243.4	frequency=1	major_base=A	major_cov=46/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/45
RA	7398	.	1	1542414	0	T	C	consensus_score=250.0	frequency=1	major_base=C	major_cov=46/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/44
RA	7399	.	1	1542961	0	C	T	consensus_score=239.3	frequency=1	major_base=T	major_cov=47/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/41
RA	7400	.	1	1543696	0	C	T	consensus_score=272.7	frequency=1	major_base=T	major_cov=56/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/43
RA	7401	.	1	1544113	0	A	C	consensus_score=283.5	frequency=1	major_base=C	major_cov=47/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/52
RA	7402	.	1	1544381	1	.	T	consensus_score=183.2	frequency=1	major_base=T	major_cov=22/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/42
RA	7403	.	1	1545511	0	A	G	bias_e_value=1695150	bias_p_value=0.803715	consensus_score=217.9	fisher_strand_p_value=0.443038	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=44/34	major_frequency=9.873e-01	minor_base=C	minor_cov=0/1	new_cov=44/34	polymorphism_frequency=9.873e-01	polymorphism_score=-5.5	prediction=consensus	ref_cov=0/0	total_cov=44/35
RA	7404	.	1	1547223	0	A	G	consensus_score=210.1	frequency=1	major_base=G	major_cov=41/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/35
RA	7405	.	1	1548294	0	A	C	consensus_score=243.3	frequency=1	major_base=C	major_cov=40/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/43
RA	7406	.	1	1548942	0	T	C	consensus_score=164.6	frequency=1	major_base=C	major_cov=41/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/19
RA	7407	.	1	1551730	0	A	G	consensus_score=192.7	frequency=1	major_base=G	major_cov=28/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/42
RA	7408	.	1	1553403	0	T	C	consensus_score=206.8	frequency=1	major_base=C	major_cov=35/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/40
RA	7409	.	1	1554100	0	A	G	consensus_score=226.5	frequency=1	major_base=G	major_cov=38/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/41
RA	7410	.	1	1554442	0	G	T	consensus_score=258.0	frequency=1	major_base=T	major_cov=39/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/59
RA	7411	.	1	1555925	0	G	C	consensus_score=98.1	frequency=1	major_base=C	major_cov=17/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/18
RA	7412	.	1	1557281	0	G	A	bias_e_value=1748300	bias_p_value=0.828914	consensus_score=160.1	fisher_strand_p_value=0.47541	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=28/32	major_frequency=9.836e-01	minor_base=G	minor_cov=1/0	new_cov=28/32	polymorphism_frequency=9.836e-01	polymorphism_score=-5.7	prediction=consensus	ref_cov=1/0	total_cov=29/32
RA	7413	.	1	1557422	0	C	T	consensus_score=231.4	frequency=1	major_base=T	major_cov=50/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/32
RA	7414	.	1	1558005	0	G	A	consensus_score=267.2	frequency=1	major_base=A	major_cov=47/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/50
RA	7415	.	1	1560877	0	T	G	consensus_score=266.3	frequency=1	major_base=G	major_cov=50/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/45
RA	7416	.	1	1561350	0	G	A	consensus_score=279.3	frequency=1	major_base=A	major_cov=51/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/47
RA	7417	.	1	1562315	0	T	G	consensus_score=180.7	frequency=1	major_base=G	major_cov=33/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/31
RA	7418	.	1	1563944	0	T	C	consensus_score=271.0	frequency=1	major_base=C	major_cov=55/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/41
RA	7419	.	1	1564986	0	C	T	consensus_score=249.1	frequency=1	major_base=T	major_cov=46/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/44
RA	7420	.	1	1567413	0	A	C	bias_e_value=1676380	bias_p_value=0.794816	consensus_score=13.9	fisher_strand_p_value=0.444444	frequency=1	ks_quality_p_value=0.972604	major_base=C	major_cov=5/3	major_frequency=8.889e-01	minor_base=T	minor_cov=0/1	new_cov=5/3	polymorphism_frequency=8.889e-01	polymorphism_score=-3.8	prediction=consensus	ref_cov=0/0	total_cov=5/4
RA	7421	.	1	1567498	0	G	T	consensus_score=46.4	frequency=1	major_base=T	major_cov=11/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/8
RA	7422	.	1	1567982	0	A	G	consensus_score=278.1	frequency=1	major_base=G	major_cov=54/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/45
RA	7423	.	1	1568732	0	C	A	consensus_score=308.8	frequency=1	major_base=A	major_cov=55/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/57
RA	7424	.	1	1568974	0	C	T	consensus_score=256.1	frequency=1	major_base=T	major_cov=43/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/51
RA	7425	.	1	1569930	0	G	A	consensus_score=252.5	frequency=1	major_base=A	major_cov=42/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/48
RA	7426	.	1	1570180	0	A	G	consensus_score=203.8	frequency=1	major_base=G	major_cov=32/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/40
RA	7427	.	1	1571298	0	T	G	consensus_score=255.8	frequency=1	major_base=G	major_cov=35/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/53
RA	7428	.	1	1571393	0	G	A	consensus_score=242.5	frequency=1	major_base=A	major_cov=40/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/44
RA	7429	.	1	1572273	0	C	T	consensus_score=215.7	frequency=1	major_base=T	major_cov=41/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/38
RA	7430	.	1	1573299	0	C	A	consensus_score=127.5	frequency=1	major_base=A	major_cov=25/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/23
RA	7431	.	1	1576554	0	A	G	consensus_score=227.4	frequency=1	major_base=G	major_cov=38/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/44
RA	7432	.	1	1578234	0	T	G	consensus_score=273.2	frequency=1	major_base=G	major_cov=44/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/51
RA	7433	.	1	1581254	0	C	T	consensus_score=223.4	frequency=1	major_base=T	major_cov=33/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/48
RA	7434	.	1	1581951	0	G	A	consensus_score=93.5	frequency=1	major_base=A	major_cov=21/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/15
RA	7435	.	1	1582033	1	.	A	consensus_score=96.8	frequency=1	major_base=A	major_cov=22/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/15
RA	7436	.	1	1583244	0	T	C	bias_e_value=2109140	bias_p_value=1	consensus_score=247.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999733	major_base=C	major_cov=33/53	major_frequency=9.885e-01	minor_base=T	minor_cov=0/1	new_cov=33/53	polymorphism_frequency=9.885e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=33/54
RA	7437	.	1	1584009	0	A	G	consensus_score=260.7	frequency=1	major_base=G	major_cov=54/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/41
RA	7438	.	1	1585108	0	T	C	consensus_score=227.8	frequency=1	major_base=C	major_cov=44/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/39
RA	7439	.	1	1585437	0	A	G	consensus_score=273.6	frequency=1	major_base=G	major_cov=42/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/56
RA	7440	.	1	1585587	0	T	C	consensus_score=220.2	frequency=1	major_base=C	major_cov=39/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/40
RA	7441	.	1	1587027	0	G	A	consensus_score=197.7	frequency=1	major_base=A	major_cov=33/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/40
RA	7442	.	1	1587036	0	A	G	consensus_score=206.7	frequency=1	major_base=G	major_cov=34/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/40
RA	7443	.	1	1587212	0	A	G	consensus_score=177.7	frequency=1	major_base=G	major_cov=35/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/31
RA	7444	.	1	1587228	0	A	G	consensus_score=173.9	frequency=1	major_base=G	major_cov=32/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/31
RA	7445	.	1	1589083	0	C	T	consensus_score=205.9	frequency=1	major_base=T	major_cov=34/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/43
RA	7446	.	1	1589950	0	G	A	bias_e_value=1731420	bias_p_value=0.82091	consensus_score=239.5	fisher_strand_p_value=0.466667	frequency=1	ks_quality_p_value=0.996013	major_base=A	major_cov=48/41	major_frequency=9.889e-01	minor_base=G	minor_cov=0/1	new_cov=48/41	polymorphism_frequency=9.889e-01	polymorphism_score=-5.1	prediction=consensus	ref_cov=0/1	total_cov=48/42
RA	7447	.	1	1590301	0	C	A	bias_e_value=1207580	bias_p_value=0.572544	consensus_score=123.8	fisher_strand_p_value=0.235294	frequency=1	ks_quality_p_value=0.990625	major_base=A	major_cov=23/26	major_frequency=9.423e-01	minor_base=T	minor_cov=3/0	new_cov=23/26	polymorphism_frequency=9.423e-01	polymorphism_score=-4.7	prediction=consensus	ref_cov=0/0	total_cov=26/26
RA	7448	.	1	1590470	0	A	G	consensus_score=196.0	frequency=1	major_base=G	major_cov=41/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/28
RA	7449	.	1	1591898	0	C	T	bias_e_value=0.00519208	bias_p_value=2.4617e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=86.7	fisher_strand_p_value=1.02569e-10	frequency=2.951e-01	ks_quality_p_value=1	major_base=C	major_cov=37/6	major_frequency=7.049e-01	minor_base=T	minor_cov=0/18	new_cov=0/18	polymorphism_frequency=2.951e-01	polymorphism_score=12.0	prediction=polymorphism	ref_cov=37/6	total_cov=37/25
RA	7450	.	1	1592076	0	T	G	consensus_score=236.9	frequency=1	major_base=G	major_cov=46/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/39
RA	7451	.	1	1592447	0	T	G	consensus_score=236.8	frequency=1	major_base=G	major_cov=44/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/39
RA	7452	.	1	1592797	0	T	G	bias_e_value=0.00613436	bias_p_value=2.90846e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=140.1	fisher_strand_p_value=1.22069e-10	frequency=2.763e-01	ks_quality_p_value=1	major_base=T	major_cov=12/43	major_frequency=7.237e-01	minor_base=G	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.763e-01	polymorphism_score=13.1	prediction=polymorphism	ref_cov=12/43	total_cov=33/43
RA	7453	.	1	1593242	0	A	G	consensus_score=136.4	frequency=1	major_base=G	major_cov=26/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/26
RA	7454	.	1	1593576	0	G	A	consensus_score=193.8	frequency=1	major_base=A	major_cov=36/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/36
RA	7455	.	1	1594198	0	T	C	consensus_score=276.6	frequency=1	major_base=C	major_cov=47/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/51
RA	7456	.	1	1594750	0	T	.	consensus_score=393.7	frequency=1	major_base=.	major_cov=50/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/42
RA	7457	.	1	1594986	0	T	C	consensus_score=240.8	frequency=1	major_base=C	major_cov=41/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/46
RA	7458	.	1	1595293	0	C	A	consensus_score=260.5	frequency=1	major_base=A	major_cov=52/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/45
RA	7459	.	1	1595616	0	G	T	bias_e_value=1451150	bias_p_value=0.688028	consensus_score=209.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.323004	major_base=T	major_cov=39/35	major_frequency=9.867e-01	minor_base=.	minor_cov=1/0	new_cov=39/35	polymorphism_frequency=9.867e-01	polymorphism_score=-3.4	prediction=consensus	ref_cov=0/0	total_cov=40/35
RA	7460	.	1	1596272	0	T	A	consensus_score=296.9	frequency=1	major_base=A	major_cov=51/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/56
RA	7461	.	1	1596585	0	C	T	bias_e_value=2109140	bias_p_value=0.999998	consensus_score=258.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998028	major_base=T	major_cov=39/56	major_frequency=9.896e-01	minor_base=C	minor_cov=0/1	new_cov=39/56	polymorphism_frequency=9.896e-01	polymorphism_score=-5.1	prediction=consensus	ref_cov=0/1	total_cov=39/57
RA	7462	.	1	1596697	0	C	T	consensus_score=233.2	frequency=1	major_base=T	major_cov=43/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/43
RA	7463	.	1	1599563	0	C	T	consensus_score=187.3	frequency=1	major_base=T	major_cov=34/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/35
RA	7464	.	1	1599637	0	G	A	consensus_score=248.6	frequency=1	major_base=A	major_cov=44/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/43
RA	7465	.	1	1600004	0	C	T	consensus_score=224.5	frequency=1	major_base=T	major_cov=33/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/50
RA	7466	.	1	1600090	0	A	G	consensus_score=192.1	frequency=1	major_base=G	major_cov=32/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/37
RA	7467	.	1	1601191	0	A	G	consensus_score=265.1	frequency=1	major_base=G	major_cov=45/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/47
RA	7468	.	1	1601809	0	A	G	consensus_score=195.9	frequency=1	major_base=G	major_cov=43/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/36
RA	7469	.	1	1602123	0	A	G	bias_e_value=1747900	bias_p_value=0.828723	consensus_score=282.6	fisher_strand_p_value=0.475248	frequency=1	ks_quality_p_value=0.999802	major_base=G	major_cov=47/53	major_frequency=9.901e-01	minor_base=A	minor_cov=1/0	new_cov=47/53	polymorphism_frequency=9.901e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=48/53
RA	7470	.	1	1602340	0	T	C	consensus_score=293.5	frequency=1	major_base=C	major_cov=45/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/61
RA	7471	.	1	1603796	0	T	C	consensus_score=304.9	frequency=1	major_base=C	major_cov=57/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/49
RA	7472	.	1	1604338	0	G	A	consensus_score=218.3	frequency=1	major_base=A	major_cov=42/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/38
RA	7473	.	1	1604603	0	A	G	consensus_score=277.2	frequency=1	major_base=G	major_cov=58/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/42
RA	7474	.	1	1605904	0	A	G	consensus_score=254.3	frequency=1	major_base=G	major_cov=44/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/44
RA	7475	.	1	1606839	0	T	C	consensus_score=195.5	frequency=1	major_base=C	major_cov=42/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/30
RA	7476	.	1	1607465	0	C	T	consensus_score=232.6	frequency=1	major_base=T	major_cov=39/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/43
RA	7477	.	1	1609118	0	G	A	consensus_score=175.8	frequency=1	major_base=A	major_cov=32/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/34
RA	7478	.	1	1609530	0	T	G	consensus_score=218.4	frequency=1	major_base=G	major_cov=39/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/38
RA	7479	.	1	1609940	0	A	G	consensus_score=296.9	frequency=1	major_base=G	major_cov=50/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/52
RA	7480	.	1	1611503	0	G	A	consensus_score=316.0	frequency=1	major_base=A	major_cov=50/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/60
RA	7481	.	1	1611684	0	G	A	consensus_score=254.0	frequency=1	major_base=A	major_cov=43/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/57
RA	7482	.	1	1613324	0	C	.	consensus_score=146.3	frequency=1	major_base=.	major_cov=15/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/20
RA	7483	.	1	1613325	0	T	.	consensus_score=146.3	frequency=1	major_base=.	major_cov=15/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/20
RA	7484	.	1	1613512	0	G	A	consensus_score=52.4	frequency=1	major_base=A	major_cov=6/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/15
RA	7485	.	1	1613945	0	G	A	consensus_score=138.2	frequency=1	major_base=A	major_cov=29/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/21
RA	7486	.	1	1616532	0	T	C	consensus_score=213.1	frequency=1	major_base=C	major_cov=44/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/33
RA	7487	.	1	1616582	0	T	C	consensus_score=216.4	frequency=1	major_base=C	major_cov=36/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/42
RA	7488	.	1	1616718	0	T	C	consensus_score=206.7	frequency=1	major_base=C	major_cov=34/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/41
RA	7489	.	1	1617397	0	C	T	consensus_score=206.7	frequency=1	major_base=T	major_cov=36/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/40
RA	7490	.	1	1617686	0	G	A	bias_e_value=841077	bias_p_value=0.398777	consensus_score=169.7	fisher_strand_p_value=0.131745	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=31/38	major_frequency=9.452e-01	minor_base=C	minor_cov=0/4	new_cov=31/38	polymorphism_frequency=9.452e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/42
RA	7491	.	1	1618037	0	C	A	consensus_score=171.9	frequency=1	major_base=A	major_cov=29/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/35
RA	7492	.	1	1622202	0	C	T	bias_e_value=1566250	bias_p_value=0.742602	consensus_score=231.3	fisher_strand_p_value=0.376471	frequency=1	ks_quality_p_value=0.995528	major_base=T	major_cov=31/53	major_frequency=9.882e-01	minor_base=C	minor_cov=1/0	new_cov=31/53	polymorphism_frequency=9.882e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=32/53
RA	7493	.	1	1623309	0	A	G	consensus_score=236.3	frequency=1	major_base=G	major_cov=35/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/49
RA	7494	.	1	1625160	0	A	G	consensus_score=225.9	frequency=1	major_base=G	major_cov=40/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/41
RA	7495	.	1	1625924	0	A	G	bias_e_value=1714600	bias_p_value=0.812935	consensus_score=129.3	fisher_strand_p_value=0.454545	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=30/24	major_frequency=9.818e-01	minor_base=T	minor_cov=0/1	new_cov=30/24	polymorphism_frequency=9.818e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/25
RA	7496	.	1	1626134	0	A	G	consensus_score=237.5	frequency=1	major_base=G	major_cov=46/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/37
RA	7497	.	1	1626298	0	G	A	consensus_score=270.1	frequency=1	major_base=A	major_cov=56/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/39
RA	7498	.	1	1632156	0	G	A	consensus_score=218.3	frequency=1	major_base=A	major_cov=41/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/40
RA	7499	.	1	1632796	0	T	C	consensus_score=110.3	frequency=1	major_base=C	major_cov=25/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/16
RA	7500	.	1	1633589	0	A	C	consensus_score=156.7	frequency=1	major_base=C	major_cov=31/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/26
RA	7501	.	1	1636132	0	A	G	consensus_score=163.7	frequency=1	major_base=G	major_cov=34/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/26
RA	7502	.	1	1636720	0	T	C	consensus_score=145.2	frequency=1	major_base=C	major_cov=30/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/23
RA	7503	.	1	1636859	0	C	T	bias_e_value=943.271	bias_p_value=0.00044723	consensus_reject=FREQUENCY_CUTOFF	consensus_score=99.7	fisher_strand_p_value=4.02138e-05	frequency=2.836e-01	ks_quality_p_value=1	major_base=C	major_cov=24/24	major_frequency=7.164e-01	minor_base=T	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.836e-01	polymorphism_score=12.2	prediction=polymorphism	ref_cov=24/24	total_cov=45/24
RA	7504	.	1	1637315	0	A	G	consensus_score=161.6	frequency=1	major_base=G	major_cov=33/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/26
RA	7505	.	1	1638974	0	G	A	consensus_score=115.0	frequency=1	major_base=A	major_cov=26/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/18
RA	7506	.	1	1641332	0	C	A	consensus_score=180.6	frequency=1	major_base=A	major_cov=34/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/32
RA	7507	.	1	1641364	0	G	A	consensus_score=144.5	frequency=1	major_base=A	major_cov=26/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/28
RA	7508	.	1	1641533	0	G	A	consensus_score=162.9	frequency=1	major_base=A	major_cov=28/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/32
RA	7509	.	1	1642234	0	G	A	consensus_score=10.7	frequency=1	major_base=A	major_cov=3/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/3
RA	7510	.	1	1643257	0	C	T	consensus_score=34.6	frequency=1	major_base=T	major_cov=6/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/9
RA	7511	.	1	1644954	0	G	A	consensus_score=84.3	frequency=1	major_base=A	major_cov=18/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/15
RA	7512	.	1	1645243	0	C	T	consensus_score=124.8	frequency=1	major_base=T	major_cov=19/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/28
RA	7513	.	1	1645323	0	A	G	consensus_score=120.1	frequency=1	major_base=G	major_cov=14/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/29
RA	7514	.	1	1645854	0	A	.	consensus_score=41.6	frequency=1	major_base=.	major_cov=5/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/6
RA	7515	.	1	1645855	0	A	.	consensus_score=41.6	frequency=1	major_base=.	major_cov=5/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/6
RA	7516	.	1	1645856	0	T	.	consensus_score=41.6	frequency=1	major_base=.	major_cov=5/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/6
RA	7517	.	1	1645857	0	C	.	consensus_score=41.6	frequency=1	major_base=.	major_cov=5/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/6
RA	7518	.	1	1646793	0	C	A	consensus_score=26.4	frequency=1	major_base=A	major_cov=7/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/5
RA	7519	.	1	1647186	0	G	A	consensus_score=20.6	frequency=1	major_base=A	major_cov=6/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/4
RA	7520	.	1	1647287	0	T	C	consensus_score=101.8	frequency=1	major_base=C	major_cov=24/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/14
RA	7521	.	1	1648569	0	A	G	consensus_score=31.0	frequency=1	major_base=G	major_cov=5/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/8
RA	7522	.	1	1648682	0	T	C	consensus_score=64.7	frequency=1	major_base=C	major_cov=13/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/11
RA	7523	.	1	1648762	0	G	A	consensus_score=35.9	frequency=1	major_base=A	major_cov=7/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/8
RA	7524	.	1	1649523	0	G	A	consensus_score=97.3	frequency=1	major_base=A	major_cov=20/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/17
RA	7525	.	1	1649813	0	A	G	consensus_score=171.7	frequency=1	major_base=G	major_cov=37/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/30
RA	7526	.	1	1651997	0	A	G	consensus_score=160.9	frequency=1	major_base=G	major_cov=31/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/27
RA	7527	.	1	1652142	0	G	A	consensus_score=203.7	frequency=1	major_base=A	major_cov=41/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/34
RA	7528	.	1	1652438	0	C	T	consensus_score=173.9	frequency=1	major_base=T	major_cov=35/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/30
RA	7529	.	1	1652932	0	A	C	consensus_score=215.0	frequency=1	major_base=C	major_cov=44/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/32
RA	7530	.	1	1653335	0	T	C	consensus_score=185.6	frequency=1	major_base=C	major_cov=26/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/40
RA	7531	.	1	1653757	0	T	C	consensus_score=177.9	frequency=1	major_base=C	major_cov=23/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/41
RA	7532	.	1	1654301	0	A	T	consensus_score=137.6	frequency=1	major_base=T	major_cov=33/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/19
RA	7533	.	1	1655423	0	C	T	consensus_score=195.9	frequency=1	major_base=T	major_cov=29/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/40
RA	7534	.	1	1658031	0	G	C	consensus_score=176.1	frequency=1	major_base=C	major_cov=26/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/36
RA	7535	.	1	1658146	0	T	G	consensus_score=159.4	frequency=1	major_base=G	major_cov=30/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/28
RA	7536	.	1	1660130	0	A	G	consensus_score=227.4	frequency=1	major_base=G	major_cov=35/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/46
RA	7537	.	1	1663002	0	G	A	consensus_score=235.7	frequency=1	major_base=A	major_cov=43/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/44
RA	7538	.	1	1663272	0	A	C	consensus_score=212.0	frequency=1	major_base=C	major_cov=44/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/32
RA	7539	.	1	1669598	0	T	C	consensus_score=104.6	frequency=1	major_base=C	major_cov=22/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/16
RA	7540	.	1	1670030	1	.	T	consensus_score=48.3	frequency=1	major_base=T	major_cov=8/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/11
RA	7541	.	1	1670064	0	A	T	consensus_score=30.5	frequency=1	major_base=T	major_cov=9/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/4
RA	7542	.	1	1671170	0	A	G	consensus_score=214.6	frequency=1	major_base=G	major_cov=43/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/32
RA	7543	.	1	1673270	0	G	A	consensus_score=260.7	frequency=1	major_base=A	major_cov=52/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/44
RA	7544	.	1	1673823	0	G	A	consensus_score=224.1	frequency=1	major_base=A	major_cov=38/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/44
RA	7545	.	1	1674985	0	G	A	consensus_score=225.9	frequency=1	major_base=A	major_cov=50/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/28
RA	7546	.	1	1675414	0	A	G	consensus_score=251.2	frequency=1	major_base=G	major_cov=49/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/42
RA	7547	.	1	1676695	0	T	C	consensus_score=279.1	frequency=1	major_base=C	major_cov=50/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/50
RA	7548	.	1	1679892	0	G	A	consensus_score=214.8	frequency=1	major_base=A	major_cov=33/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/44
RA	7549	.	1	1681715	0	T	C	consensus_score=252.2	frequency=1	major_base=C	major_cov=36/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/53
RA	7550	.	1	1683818	0	G	C	consensus_score=246.5	frequency=1	major_base=C	major_cov=44/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/44
RA	7551	.	1	1684036	0	C	G	consensus_score=224.7	frequency=1	major_base=G	major_cov=43/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/39
RA	7552	.	1	1685024	0	T	C	consensus_score=321.6	frequency=1	major_base=C	major_cov=46/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/67
RA	7553	.	1	1685314	0	T	C	consensus_score=209.7	frequency=1	major_base=C	major_cov=49/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/28
RA	7554	.	1	1685830	0	C	A	consensus_score=211.5	frequency=1	major_base=A	major_cov=35/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/41
RA	7555	.	1	1685979	0	G	A	bias_e_value=1586330	bias_p_value=0.75212	consensus_score=121.3	fisher_strand_p_value=0.384615	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=32/19	major_frequency=9.808e-01	minor_base=G	minor_cov=0/1	new_cov=32/19	polymorphism_frequency=9.808e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=32/20
RA	7556	.	1	1686299	0	G	A	consensus_score=224.2	frequency=1	major_base=A	major_cov=38/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/44
RA	7557	.	1	1686873	0	G	A	consensus_score=258.9	frequency=1	major_base=A	major_cov=46/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/48
RA	7558	.	1	1687133	0	A	G	bias_e_value=1765400	bias_p_value=0.837022	consensus_score=203.0	fisher_strand_p_value=0.486486	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=35/38	major_frequency=9.865e-01	minor_base=A	minor_cov=1/0	new_cov=35/38	polymorphism_frequency=9.865e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=36/38
RA	7559	.	1	1687617	0	A	G	consensus_score=190.0	frequency=1	major_base=G	major_cov=34/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/35
RA	7560	.	1	1687928	0	G	A	consensus_score=191.0	frequency=1	major_base=A	major_cov=42/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/29
RA	7561	.	1	1688327	0	G	A	bias_e_value=0.00286267	bias_p_value=1.35727e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=127.9	fisher_strand_p_value=5.51255e-11	frequency=2.558e-01	ks_quality_p_value=1	major_base=G	major_cov=49/15	major_frequency=7.442e-01	minor_base=A	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.558e-01	polymorphism_score=11.2	prediction=polymorphism	ref_cov=49/15	total_cov=49/37
RA	7562	.	1	1688347	0	A	C	bias_e_value=518425	bias_p_value=0.245799	consensus_score=202.2	fisher_strand_p_value=0.066407	frequency=1	ks_quality_p_value=0.996111	major_base=C	major_cov=47/30	major_frequency=9.625e-01	minor_base=.	minor_cov=0/3	new_cov=47/30	polymorphism_frequency=9.625e-01	polymorphism_score=0.4	prediction=consensus	ref_cov=0/1	total_cov=47/34
RA	7563	.	1	1688373	0	C	T	bias_e_value=0.516646	bias_p_value=2.44955e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=120.8	fisher_strand_p_value=1.27742e-08	frequency=2.250e-01	ks_quality_p_value=1	major_base=C	major_cov=45/17	major_frequency=7.750e-01	minor_base=T	minor_cov=0/18	new_cov=0/18	polymorphism_frequency=2.250e-01	polymorphism_score=13.0	prediction=polymorphism	ref_cov=45/17	total_cov=46/36
RA	7564	.	1	1688420	0	G	A	consensus_score=230.6	frequency=1	major_base=A	major_cov=46/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/39
RA	7565	.	1	1689074	0	C	T	consensus_score=132.2	frequency=1	major_base=T	major_cov=22/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/26
RA	7566	.	1	1689840	0	T	C	consensus_score=251.9	frequency=1	major_base=C	major_cov=37/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/49
RA	7567	.	1	1690270	0	A	G	consensus_score=33.3	frequency=1	major_base=G	major_cov=9/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/4
RA	7568	.	1	1693441	0	C	T	consensus_score=178.1	frequency=1	major_base=T	major_cov=36/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/30
RA	7569	.	1	1693905	0	A	G	bias_e_value=2109140	bias_p_value=1	consensus_score=204.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=48/28	major_frequency=9.870e-01	minor_base=A	minor_cov=1/0	new_cov=48/28	polymorphism_frequency=9.870e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=49/28
RA	7570	.	1	1693980	0	C	T	bias_e_value=1821230	bias_p_value=0.863491	consensus_score=219.6	fisher_strand_p_value=0.525316	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=48/30	major_frequency=9.750e-01	minor_base=C	minor_cov=2/0	new_cov=48/30	polymorphism_frequency=9.750e-01	polymorphism_score=NA	prediction=consensus	ref_cov=2/0	total_cov=50/30
RA	7571	.	1	1694020	0	G	T	consensus_score=213.9	frequency=1	major_base=T	major_cov=50/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/28
RA	7572	.	1	1695541	0	C	T	consensus_score=205.4	frequency=1	major_base=T	major_cov=36/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/41
RA	7573	.	1	1695695	0	G	A	consensus_score=217.0	frequency=1	major_base=A	major_cov=43/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/34
RA	7574	.	1	1696919	0	C	T	consensus_score=108.3	frequency=1	major_base=T	major_cov=17/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/24
RA	7575	.	1	1699738	0	A	C	consensus_score=250.7	frequency=1	major_base=C	major_cov=41/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/50
RA	7576	.	1	1699976	0	A	T	bias_e_value=0.0001881	bias_p_value=8.9183e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=144.9	fisher_strand_p_value=3.24859e-12	frequency=2.500e-01	ks_quality_p_value=1	major_base=A	major_cov=6/48	major_frequency=7.500e-01	minor_base=T	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.500e-01	polymorphism_score=13.5	prediction=polymorphism	ref_cov=6/48	total_cov=24/48
RA	7577	.	1	1700000	0	T	G	bias_e_value=0.00101199	bias_p_value=4.79812e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=142.6	fisher_strand_p_value=1.88534e-11	frequency=2.639e-01	ks_quality_p_value=0.990091	major_base=T	major_cov=8/45	major_frequency=7.361e-01	minor_base=G	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.639e-01	polymorphism_score=11.2	prediction=polymorphism	ref_cov=8/45	total_cov=29/45
RA	7578	.	1	1700984	0	T	C	consensus_score=249.0	frequency=1	major_base=C	major_cov=41/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/45
RA	7579	.	1	1701366	0	T	C	consensus_score=249.8	frequency=1	major_base=C	major_cov=35/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/55
RA	7580	.	1	1703682	0	G	T	consensus_score=286.4	frequency=1	major_base=T	major_cov=50/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/56
RA	7581	.	1	1704332	0	G	T	consensus_score=217.6	frequency=1	major_base=T	major_cov=50/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/30
RA	7582	.	1	1704692	0	C	T	consensus_score=281.3	frequency=1	major_base=T	major_cov=43/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/59
RA	7583	.	1	1705478	0	C	T	consensus_score=180.4	frequency=1	major_base=T	major_cov=38/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/26
RA	7584	.	1	1706925	0	T	C	consensus_score=161.0	frequency=1	major_base=C	major_cov=31/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/27
RA	7585	.	1	1709149	0	C	T	bias_e_value=11.0325	bias_p_value=5.23079e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=102.1	fisher_strand_p_value=3.31704e-07	frequency=2.821e-01	ks_quality_p_value=0.989977	major_base=C	major_cov=33/23	major_frequency=7.179e-01	minor_base=T	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.821e-01	polymorphism_score=17.6	prediction=polymorphism	ref_cov=33/23	total_cov=33/46
RA	7586	.	1	1709179	0	A	C	bias_e_value=2.51998e-05	bias_p_value=1.19479e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=57.8	fisher_strand_p_value=4.04518e-13	frequency=4.848e-01	ks_quality_p_value=1	major_base=A	major_cov=28/6	major_frequency=5.152e-01	minor_base=C	minor_cov=0/32	new_cov=0/32	polymorphism_frequency=4.848e-01	polymorphism_score=24.9	prediction=polymorphism	ref_cov=28/6	total_cov=28/38
RA	7587	.	1	1709385	0	A	G	consensus_score=61.4	frequency=1	major_base=G	major_cov=8/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/15
RA	7588	.	1	1709434	0	G	A	consensus_score=42.9	frequency=1	major_base=A	major_cov=8/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/10
RA	7589	.	1	1710044	0	T	C	consensus_score=257.5	frequency=1	major_base=C	major_cov=50/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/45
RA	7590	.	1	1710094	0	A	G	consensus_score=262.4	frequency=1	major_base=G	major_cov=54/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/44
RA	7591	.	1	1711823	0	A	G	consensus_score=185.3	frequency=1	major_base=G	major_cov=32/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/33
RA	7592	.	1	1712455	0	T	G	consensus_score=277.0	frequency=1	major_base=G	major_cov=41/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/54
RA	7593	.	1	1713636	0	A	G	consensus_score=191.2	frequency=1	major_base=G	major_cov=38/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/30
RA	7594	.	1	1713723	0	A	G	consensus_score=182.8	frequency=1	major_base=G	major_cov=31/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/36
RA	7595	.	1	1713825	0	T	A	bias_e_value=0.00808529	bias_p_value=3.83345e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=97.0	fisher_strand_p_value=1.62861e-10	frequency=2.909e-01	ks_quality_p_value=1	major_base=T	major_cov=4/35	major_frequency=7.091e-01	minor_base=A	minor_cov=16/0	new_cov=16/0	polymorphism_frequency=2.909e-01	polymorphism_score=11.0	prediction=polymorphism	ref_cov=4/35	total_cov=20/35
RA	7596	.	1	1713934	0	T	G	consensus_score=134.0	frequency=1	major_base=G	major_cov=24/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/24
RA	7597	.	1	1715176	0	A	G	consensus_score=211.8	frequency=1	major_base=G	major_cov=33/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/43
RA	7598	.	1	1720329	0	G	A	consensus_score=209.2	frequency=1	major_base=A	major_cov=48/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/30
RA	7599	.	1	1720848	0	T	C	consensus_score=155.2	frequency=1	major_base=C	major_cov=32/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/25
RA	7600	.	1	1722117	1	.	A	consensus_score=132.7	frequency=1	major_base=A	major_cov=28/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/22
RA	7601	.	1	1723242	0	T	C	consensus_score=239.3	frequency=1	major_base=C	major_cov=36/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/48
RA	7602	.	1	1724024	0	T	C	consensus_score=170.2	frequency=1	major_base=C	major_cov=25/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/38
RA	7603	.	1	1725413	0	C	T	consensus_score=214.3	frequency=1	major_base=T	major_cov=38/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/39
RA	7604	.	1	1727603	0	G	A	consensus_score=210.9	frequency=1	major_base=A	major_cov=43/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/36
RA	7605	.	1	1727776	0	T	G	consensus_score=248.8	frequency=1	major_base=G	major_cov=50/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/37
RA	7606	.	1	1728386	0	G	A	consensus_score=232.6	frequency=1	major_base=A	major_cov=43/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/39
RA	7607	.	1	1728566	0	T	C	bias_e_value=2109140	bias_p_value=1	consensus_score=230.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=37/43	major_frequency=9.877e-01	minor_base=G	minor_cov=0/1	new_cov=37/43	polymorphism_frequency=9.877e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/44
RA	7608	.	1	1729049	0	G	A	consensus_score=221.0	frequency=1	major_base=A	major_cov=50/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/32
RA	7609	.	1	1730391	0	G	A	consensus_score=201.6	frequency=1	major_base=A	major_cov=39/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/36
RA	7610	.	1	1734784	0	T	C	consensus_score=165.4	frequency=1	major_base=C	major_cov=29/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/28
RA	7611	.	1	1735911	0	G	A	consensus_score=241.8	frequency=1	major_base=A	major_cov=50/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/40
RA	7612	.	1	1735992	0	G	A	consensus_score=229.2	frequency=1	major_base=A	major_cov=50/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/36
RA	7613	.	1	1735995	0	G	A	consensus_score=234.6	frequency=1	major_base=A	major_cov=50/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/36
RA	7614	.	1	1736215	0	G	A	consensus_score=209.3	frequency=1	major_base=A	major_cov=42/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/32
RA	7615	.	1	1736448	0	A	G	consensus_score=253.0	frequency=1	major_base=G	major_cov=40/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/48
RA	7616	.	1	1736852	0	C	A	consensus_score=256.2	frequency=1	major_base=A	major_cov=39/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/54
RA	7617	.	1	1737669	0	A	G	consensus_score=255.2	frequency=1	major_base=G	major_cov=49/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/48
RA	7618	.	1	1737691	0	A	C	consensus_score=254.9	frequency=1	major_base=C	major_cov=45/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/47
RA	7619	.	1	1741803	0	T	C	consensus_score=216.7	frequency=1	major_base=C	major_cov=42/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/35
RA	7620	.	1	1742868	0	A	G	consensus_score=250.0	frequency=1	major_base=G	major_cov=41/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/50
RA	7621	.	1	1744616	0	C	T	consensus_score=199.6	frequency=1	major_base=T	major_cov=43/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/30
RA	7622	.	1	1745396	0	T	C	consensus_score=282.7	frequency=1	major_base=C	major_cov=49/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/54
RA	7623	.	1	1747150	0	G	A	consensus_score=270.1	frequency=1	major_base=A	major_cov=42/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/54
RA	7624	.	1	1747651	0	G	A	consensus_score=273.9	frequency=1	major_base=A	major_cov=57/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/44
RA	7625	.	1	1748561	0	T	C	consensus_score=221.1	frequency=1	major_base=C	major_cov=36/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/43
RA	7626	.	1	1748767	0	G	T	bias_e_value=1989300	bias_p_value=0.943181	consensus_score=208.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.682423	major_base=T	major_cov=46/29	major_frequency=9.868e-01	minor_base=G	minor_cov=1/0	new_cov=46/29	polymorphism_frequency=9.868e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=1/0	total_cov=47/29
RA	7627	.	1	1751581	0	G	A	consensus_score=264.0	frequency=1	major_base=A	major_cov=52/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/41
RA	7628	.	1	1751858	0	A	C	consensus_score=228.2	frequency=1	major_base=C	major_cov=28/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/55
RA	7629	.	1	1752446	0	C	T	bias_e_value=1700120	bias_p_value=0.806073	consensus_score=185.9	fisher_strand_p_value=0.445946	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=32/41	major_frequency=9.865e-01	minor_base=C	minor_cov=1/0	new_cov=32/41	polymorphism_frequency=9.865e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=33/41
RA	7630	.	1	1752813	0	G	A	consensus_score=210.7	frequency=1	major_base=A	major_cov=47/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/38
RA	7631	.	1	1757225	0	G	A	consensus_score=219.9	frequency=1	major_base=A	major_cov=35/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/45
RA	7632	.	1	1758239	0	C	T	bias_e_value=1191590	bias_p_value=0.564962	consensus_score=139.1	fisher_strand_p_value=0.227922	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=25/29	major_frequency=9.643e-01	minor_base=G	minor_cov=2/0	new_cov=25/29	polymorphism_frequency=9.643e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/29
RA	7633	.	1	1758392	0	G	A	consensus_score=214.9	frequency=1	major_base=A	major_cov=35/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/44
RA	7634	.	1	1759303	0	T	C	consensus_score=133.6	frequency=1	major_base=C	major_cov=21/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/26
RA	7635	.	1	1759773	0	A	G	consensus_score=221.2	frequency=1	major_base=G	major_cov=38/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/39
RA	7636	.	1	1760111	0	T	G	consensus_score=157.4	frequency=1	major_base=G	major_cov=28/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/30
RA	7637	.	1	1760403	0	T	C	consensus_score=111.8	frequency=1	major_base=C	major_cov=20/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/20
RA	7638	.	1	1760822	0	G	A	consensus_score=268.6	frequency=1	major_base=A	major_cov=57/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/43
RA	7639	.	1	1760994	0	T	.	consensus_score=337.6	frequency=1	major_base=.	major_cov=35/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/44
RA	7640	.	1	1760995	0	T	.	consensus_score=337.6	frequency=1	major_base=.	major_cov=35/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/44
RA	7641	.	1	1762587	0	T	C	consensus_score=184.3	frequency=1	major_base=C	major_cov=36/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/31
RA	7642	.	1	1762706	0	C	T	consensus_score=202.4	frequency=1	major_base=T	major_cov=41/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/31
RA	7643	.	1	1763905	0	C	T	bias_e_value=2109140	bias_p_value=1	consensus_score=186.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=45/28	major_frequency=9.865e-01	minor_base=G	minor_cov=1/0	new_cov=45/28	polymorphism_frequency=9.865e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/28
RA	7644	.	1	1767905	0	G	A	consensus_score=190.4	frequency=1	major_base=A	major_cov=21/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/46
RA	7645	.	1	1767907	0	T	C	consensus_score=177.3	frequency=1	major_base=C	major_cov=21/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/46
RA	7646	.	1	1768132	0	T	C	consensus_score=101.3	frequency=1	major_base=C	major_cov=25/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/11
RA	7647	.	1	1768668	0	G	A	consensus_score=211.4	frequency=1	major_base=A	major_cov=48/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/30
RA	7648	.	1	1768922	0	C	T	consensus_score=191.3	frequency=1	major_base=T	major_cov=34/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/37
RA	7649	.	1	1769379	0	C	T	consensus_score=213.1	frequency=1	major_base=T	major_cov=43/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/33
RA	7650	.	1	1773948	0	A	G	consensus_score=245.8	frequency=1	major_base=G	major_cov=46/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/43
RA	7651	.	1	1774929	0	A	G	bias_e_value=1727020	bias_p_value=0.818825	consensus_score=209.8	fisher_strand_p_value=0.469136	frequency=1	ks_quality_p_value=0.98499	major_base=G	major_cov=37/43	major_frequency=9.877e-01	minor_base=C	minor_cov=1/0	new_cov=37/43	polymorphism_frequency=9.877e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/43
RA	7652	.	1	1775534	0	T	.	consensus_score=281.6	frequency=1	major_base=.	major_cov=34/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/33
RA	7653	.	1	1776440	0	G	A	consensus_score=205.0	frequency=1	major_base=A	major_cov=40/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/35
RA	7654	.	1	1776967	0	C	T	bias_e_value=2109140	bias_p_value=1	consensus_score=207.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999684	major_base=T	major_cov=42/37	major_frequency=9.875e-01	minor_base=A	minor_cov=1/0	new_cov=42/37	polymorphism_frequency=9.875e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/37
RA	7655	.	1	1778466	0	A	C	consensus_score=284.1	frequency=1	major_base=C	major_cov=50/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/53
RA	7656	.	1	1779844	0	C	A	consensus_score=211.4	frequency=1	major_base=A	major_cov=37/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/40
RA	7657	.	1	1781262	0	G	A	consensus_score=175.1	frequency=1	major_base=A	major_cov=32/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/33
RA	7658	.	1	1781645	0	A	G	consensus_score=235.5	frequency=1	major_base=G	major_cov=42/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/43
RA	7659	.	1	1783168	0	C	T	bias_e_value=1999460	bias_p_value=0.947995	consensus_score=248.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.69534	major_base=T	major_cov=44/47	major_frequency=9.891e-01	minor_base=.	minor_cov=0/1	new_cov=44/47	polymorphism_frequency=9.891e-01	polymorphism_score=-3.6	prediction=consensus	ref_cov=0/0	total_cov=44/48
RA	7660	.	1	1784412	0	T	C	consensus_score=192.8	frequency=1	major_base=C	major_cov=37/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/32
RA	7661	.	1	1785103	0	G	A	consensus_score=328.2	frequency=1	major_base=A	major_cov=58/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/56
RA	7662	.	1	1785624	0	A	G	consensus_score=249.3	frequency=1	major_base=G	major_cov=44/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/47
RA	7663	.	1	1786545	0	A	G	consensus_score=211.0	frequency=1	major_base=G	major_cov=43/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/32
RA	7664	.	1	1786547	0	G	A	consensus_score=212.5	frequency=1	major_base=A	major_cov=43/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/32
RA	7665	.	1	1787256	0	A	C	consensus_score=243.8	frequency=1	major_base=C	major_cov=29/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/56
RA	7666	.	1	1787299	0	G	A	consensus_score=231.8	frequency=1	major_base=A	major_cov=33/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/51
RA	7667	.	1	1789280	0	G	T	consensus_score=55.3	frequency=1	major_base=T	major_cov=11/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/12
RA	7668	.	1	1790479	0	T	C	consensus_score=157.0	frequency=1	major_base=C	major_cov=32/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/26
RA	7669	.	1	1791032	0	T	G	consensus_score=286.2	frequency=1	major_base=G	major_cov=49/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/51
RA	7670	.	1	1792352	0	T	C	consensus_score=258.3	frequency=1	major_base=C	major_cov=45/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/45
RA	7671	.	1	1792708	0	G	A	consensus_score=238.9	frequency=1	major_base=A	major_cov=53/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/36
RA	7672	.	1	1793291	0	G	A	consensus_score=264.8	frequency=1	major_base=A	major_cov=50/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/48
RA	7673	.	1	1794614	0	T	C	consensus_score=85.2	frequency=1	major_base=C	major_cov=15/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/17
RA	7674	.	1	1794821	0	T	C	consensus_score=151.0	frequency=1	major_base=C	major_cov=35/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/19
RA	7675	.	1	1795342	0	G	A	consensus_score=216.8	frequency=1	major_base=A	major_cov=38/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/41
RA	7676	.	1	1796173	0	G	A	consensus_score=196.2	frequency=1	major_base=A	major_cov=33/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/41
RA	7677	.	1	1796416	0	A	G	consensus_score=230.3	frequency=1	major_base=G	major_cov=44/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/39
RA	7678	.	1	1798594	0	T	C	consensus_score=155.6	frequency=1	major_base=C	major_cov=26/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/31
RA	7679	.	1	1800051	0	G	A	consensus_score=182.9	frequency=1	major_base=A	major_cov=34/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/34
RA	7680	.	1	1800792	0	T	C	consensus_score=193.0	frequency=1	major_base=C	major_cov=39/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/31
RA	7681	.	1	1800962	0	C	T	consensus_score=149.2	frequency=1	major_base=T	major_cov=30/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/25
RA	7682	.	1	1800990	0	T	C	consensus_score=148.8	frequency=1	major_base=C	major_cov=28/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/28
RA	7683	.	1	1801027	0	G	A	consensus_score=184.9	frequency=1	major_base=A	major_cov=35/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/35
RA	7684	.	1	1801153	0	C	T	bias_e_value=2109140	bias_p_value=1	consensus_score=229.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=44/43	major_frequency=9.886e-01	minor_base=A	minor_cov=1/0	new_cov=44/43	polymorphism_frequency=9.886e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/43
RA	7685	.	1	1802099	0	C	T	consensus_score=291.3	frequency=1	major_base=T	major_cov=58/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/51
RA	7686	.	1	1802966	0	T	.	consensus_score=105.4	frequency=1	major_base=.	major_cov=9/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/17
RA	7687	.	1	1803154	0	G	C	consensus_score=121.6	frequency=1	major_base=C	major_cov=23/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/20
RA	7688	.	1	1804306	0	C	T	consensus_score=42.9	frequency=1	major_base=T	major_cov=9/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/9
RA	7689	.	1	1805258	0	T	C	consensus_score=27.5	frequency=1	major_base=C	major_cov=5/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/7
RA	7690	.	1	1805875	0	C	T	consensus_score=242.0	frequency=1	major_base=T	major_cov=48/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/41
RA	7691	.	1	1806006	0	C	A	consensus_score=186.3	frequency=1	major_base=A	major_cov=33/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/33
RA	7692	.	1	1806344	0	A	G	consensus_score=258.9	frequency=1	major_base=G	major_cov=44/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/50
RA	7693	.	1	1808419	0	A	C	consensus_score=217.3	frequency=1	major_base=C	major_cov=34/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/44
RA	7694	.	1	1809404	0	G	A	consensus_score=234.6	frequency=1	major_base=A	major_cov=28/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/55
RA	7695	.	1	1809688	0	T	G	consensus_score=180.3	frequency=1	major_base=G	major_cov=35/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/31
RA	7696	.	1	1810064	0	T	A	consensus_score=165.3	frequency=1	major_base=A	major_cov=37/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/25
RA	7697	.	1	1811052	0	T	C	bias_e_value=870507	bias_p_value=0.41273	consensus_score=216.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.138718	major_base=C	major_cov=36/44	major_frequency=9.877e-01	minor_base=T	minor_cov=0/1	new_cov=36/44	polymorphism_frequency=9.877e-01	polymorphism_score=-5.5	prediction=consensus	ref_cov=0/1	total_cov=36/45
RA	7698	.	1	1811111	0	A	C	consensus_score=214.5	frequency=1	major_base=C	major_cov=35/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/42
RA	7699	.	1	1814169	0	G	A	consensus_score=164.0	frequency=1	major_base=A	major_cov=38/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/23
RA	7700	.	1	1814368	0	A	T	consensus_score=247.1	frequency=1	major_base=T	major_cov=56/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/34
RA	7701	.	1	1815029	0	A	C	consensus_score=272.6	frequency=1	major_base=C	major_cov=53/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/47
RA	7702	.	1	1815588	0	T	C	consensus_score=223.8	frequency=1	major_base=C	major_cov=47/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/33
RA	7703	.	1	1816098	0	G	A	bias_e_value=2.2861e-05	bias_p_value=1.0839e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=171.4	fisher_strand_p_value=3.65727e-13	frequency=2.336e-01	ks_quality_p_value=1	major_base=G	major_cov=64/18	major_frequency=7.664e-01	minor_base=A	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.336e-01	polymorphism_score=10.9	prediction=polymorphism	ref_cov=64/18	total_cov=64/43
RA	7704	.	1	1816107	0	C	T	bias_e_value=4.3148e-05	bias_p_value=2.04576e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=185.2	fisher_strand_p_value=7.05939e-13	frequency=2.243e-01	ks_quality_p_value=1	major_base=C	major_cov=65/18	major_frequency=7.757e-01	minor_base=T	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=2.243e-01	polymorphism_score=12.4	prediction=polymorphism	ref_cov=65/18	total_cov=65/42
RA	7705	.	1	1816987	0	T	C	consensus_score=281.1	frequency=1	major_base=C	major_cov=44/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/58
RA	7706	.	1	1819678	0	G	A	consensus_score=206.9	frequency=1	major_base=A	major_cov=40/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/37
RA	7707	.	1	1820386	0	T	C	bias_e_value=2109140	bias_p_value=1	consensus_score=174.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999561	major_base=C	major_cov=33/34	major_frequency=9.853e-01	minor_base=T	minor_cov=0/1	new_cov=33/34	polymorphism_frequency=9.853e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=33/35
RA	7708	.	1	1821182	0	A	C	bias_e_value=4755.3	bias_p_value=0.00225461	consensus_reject=FREQUENCY_CUTOFF	consensus_score=74.8	fisher_strand_p_value=0.00024171	frequency=3.269e-01	ks_quality_p_value=1	major_base=A	major_cov=24/11	major_frequency=6.731e-01	minor_base=C	minor_cov=2/15	new_cov=2/15	polymorphism_frequency=3.269e-01	polymorphism_score=13.7	prediction=polymorphism	ref_cov=24/11	total_cov=26/26
RA	7709	.	1	1821527	0	A	G	consensus_score=192.4	frequency=1	major_base=G	major_cov=43/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/31
RA	7710	.	1	1822146	0	G	A	consensus_score=232.7	frequency=1	major_base=A	major_cov=45/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/41
RA	7711	.	1	1822642	0	C	T	bias_e_value=7.94302e-06	bias_p_value=3.76599e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=82.5	fisher_strand_p_value=1.2255e-13	frequency=3.382e-01	ks_quality_p_value=1	major_base=C	major_cov=5/40	major_frequency=6.618e-01	minor_base=T	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=3.382e-01	polymorphism_score=15.1	prediction=polymorphism	ref_cov=5/40	total_cov=28/40
RA	7712	.	1	1822647	0	C	T	bias_e_value=7.9428e-06	bias_p_value=3.76589e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=82.5	fisher_strand_p_value=1.2255e-13	frequency=3.382e-01	ks_quality_p_value=0.999972	major_base=C	major_cov=5/40	major_frequency=6.618e-01	minor_base=T	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=3.382e-01	polymorphism_score=15.2	prediction=polymorphism	ref_cov=5/40	total_cov=28/40
RA	7713	.	1	1822680	0	T	A	bias_e_value=0.0152236	bias_p_value=7.21791e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=123.4	fisher_strand_p_value=3.15512e-10	frequency=2.714e-01	ks_quality_p_value=1	major_base=T	major_cov=10/41	major_frequency=7.286e-01	minor_base=A	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.714e-01	polymorphism_score=10.9	prediction=polymorphism	ref_cov=10/41	total_cov=29/41
RA	7714	.	1	1822883	0	T	C	consensus_score=224.8	frequency=1	major_base=C	major_cov=36/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/43
RA	7715	.	1	1823363	0	A	G	consensus_score=211.5	frequency=1	major_base=G	major_cov=43/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/31
RA	7716	.	1	1823571	0	G	A	consensus_score=177.8	frequency=1	major_base=A	major_cov=32/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/34
RA	7717	.	1	1824231	0	G	T	bias_e_value=2062820	bias_p_value=0.978037	consensus_score=168.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.797873	major_base=T	major_cov=39/23	major_frequency=9.841e-01	minor_base=G	minor_cov=1/0	new_cov=39/23	polymorphism_frequency=9.841e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=1/0	total_cov=40/23
RA	7718	.	1	1824704	0	T	C	consensus_score=233.6	frequency=1	major_base=C	major_cov=42/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/41
RA	7719	.	1	1825870	0	T	C	consensus_score=190.5	frequency=1	major_base=C	major_cov=37/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/33
RA	7720	.	1	1830692	0	A	G	bias_e_value=1722530	bias_p_value=0.816698	consensus_score=180.1	fisher_strand_p_value=0.462687	frequency=1	ks_quality_p_value=0.99279	major_base=G	major_cov=36/30	major_frequency=9.851e-01	minor_base=A	minor_cov=0/1	new_cov=36/30	polymorphism_frequency=9.851e-01	polymorphism_score=-5.0	prediction=consensus	ref_cov=0/1	total_cov=36/31
RA	7721	.	1	1831977	0	G	A	consensus_score=154.3	frequency=1	major_base=A	major_cov=22/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/36
RA	7722	.	1	1837782	0	A	G	consensus_score=74.8	frequency=1	major_base=G	major_cov=12/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/15
RA	7723	.	1	1839682	0	C	T	consensus_score=48.3	frequency=1	major_base=T	major_cov=9/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/10
RA	7724	.	1	1840809	0	C	T	consensus_score=127.5	frequency=1	major_base=T	major_cov=23/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/24
RA	7725	.	1	1841645	0	C	T	consensus_score=203.3	frequency=1	major_base=T	major_cov=32/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/40
RA	7726	.	1	1842282	0	G	C	consensus_score=125.4	frequency=1	major_base=C	major_cov=25/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/22
RA	7727	.	1	1842495	0	A	G	consensus_score=135.0	frequency=1	major_base=G	major_cov=27/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/21
RA	7728	.	1	1843763	0	T	A	consensus_score=133.5	frequency=1	major_base=A	major_cov=23/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/27
RA	7729	.	1	1845875	0	G	A	consensus_score=130.5	frequency=1	major_base=A	major_cov=30/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/19
RA	7730	.	1	1850334	0	A	G	consensus_score=164.2	frequency=1	major_base=G	major_cov=30/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/31
RA	7731	.	1	1853714	0	A	T	consensus_score=168.6	frequency=1	major_base=T	major_cov=39/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/23
RA	7732	.	1	1854678	0	G	A	consensus_score=197.7	frequency=1	major_base=A	major_cov=33/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/39
RA	7733	.	1	1854766	0	A	G	consensus_score=192.6	frequency=1	major_base=G	major_cov=39/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/32
RA	7734	.	1	1854828	0	T	C	consensus_score=205.7	frequency=1	major_base=C	major_cov=36/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/37
RA	7735	.	1	1854978	0	G	A	consensus_score=176.5	frequency=1	major_base=A	major_cov=39/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/26
RA	7736	.	1	1854986	0	C	A	consensus_score=192.0	frequency=1	major_base=A	major_cov=39/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/28
RA	7737	.	1	1855172	0	C	T	consensus_score=228.4	frequency=1	major_base=T	major_cov=49/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/36
RA	7738	.	1	1855806	0	C	T	consensus_score=202.9	frequency=1	major_base=T	major_cov=40/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/34
RA	7739	.	1	1856836	0	T	C	consensus_score=232.4	frequency=1	major_base=C	major_cov=42/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/40
RA	7740	.	1	1857001	0	T	C	consensus_score=173.3	frequency=1	major_base=C	major_cov=30/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/34
RA	7741	.	1	1857446	0	T	C	consensus_score=190.3	frequency=1	major_base=C	major_cov=34/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/38
RA	7742	.	1	1857845	0	T	C	consensus_score=52.5	frequency=1	major_base=C	major_cov=6/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/15
RA	7743	.	1	1858551	0	T	C	consensus_score=233.6	frequency=1	major_base=C	major_cov=43/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/42
RA	7744	.	1	1860502	0	A	G	consensus_score=99.3	frequency=1	major_base=G	major_cov=15/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/21
RA	7745	.	1	1861812	0	A	C	consensus_score=322.8	frequency=1	major_base=C	major_cov=60/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/53
RA	7746	.	1	1862819	0	G	A	consensus_score=242.9	frequency=1	major_base=A	major_cov=38/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/50
RA	7747	.	1	1865047	0	T	G	consensus_score=408.9	frequency=1	major_base=G	major_cov=70/70	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=70/70	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=70/70
RA	7748	.	1	1867240	0	T	C	consensus_score=271.8	frequency=1	major_base=C	major_cov=62/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/35
RA	7749	.	1	1868968	0	T	C	consensus_score=405.2	frequency=1	major_base=C	major_cov=85/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=85/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=85/59
RA	7750	.	1	1869880	0	T	C	consensus_score=348.4	frequency=1	major_base=C	major_cov=58/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/67
RA	7751	.	1	1869953	0	G	A	consensus_score=368.5	frequency=1	major_base=A	major_cov=66/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/67
RA	7752	.	1	1871514	0	A	C	consensus_score=257.8	frequency=1	major_base=C	major_cov=49/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/44
RA	7753	.	1	1872090	0	G	A	consensus_score=267.8	frequency=1	major_base=A	major_cov=48/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/45
RA	7754	.	1	1872945	0	G	A	consensus_score=314.2	frequency=1	major_base=A	major_cov=60/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/51
RA	7755	.	1	1873159	0	T	C	bias_e_value=1764460	bias_p_value=0.836576	consensus_score=397.6	fisher_strand_p_value=0.485915	frequency=1	ks_quality_p_value=0.9999	major_base=C	major_cov=73/68	major_frequency=9.930e-01	minor_base=G	minor_cov=0/1	new_cov=73/68	polymorphism_frequency=9.930e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=73/69
RA	7756	.	1	1874296	0	G	A	bias_e_value=2095810	bias_p_value=0.993678	consensus_score=386.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.889678	major_base=A	major_cov=63/73	major_frequency=9.927e-01	minor_base=G	minor_cov=0/1	new_cov=63/73	polymorphism_frequency=9.927e-01	polymorphism_score=-5.5	prediction=consensus	ref_cov=0/1	total_cov=63/74
RA	7757	.	1	1877891	0	C	T	bias_e_value=2109140	bias_p_value=1	consensus_score=316.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=56/55	major_frequency=9.911e-01	minor_base=C	minor_cov=1/0	new_cov=56/55	polymorphism_frequency=9.911e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=57/55
RA	7758	.	1	1878294	0	T	G	consensus_score=286.1	frequency=1	major_base=G	major_cov=49/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/53
RA	7759	.	1	1878904	0	A	G	consensus_score=341.7	frequency=1	major_base=G	major_cov=56/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/63
RA	7760	.	1	1879189	0	C	G	bias_e_value=1695700	bias_p_value=0.803976	consensus_reject=FREQUENCY_CUTOFF	consensus_score=17.2	fisher_strand_p_value=0.443358	frequency=4.333e-01	ks_quality_p_value=1	major_base=C	major_cov=13/4	major_frequency=5.667e-01	minor_base=G	minor_cov=8/5	new_cov=8/5	polymorphism_frequency=4.333e-01	polymorphism_score=12.3	prediction=polymorphism	ref_cov=13/4	total_cov=22/9
RA	7761	.	1	1879316	0	C	A	bias_e_value=2109140	bias_p_value=1	consensus_score=176.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=36/30	major_frequency=9.565e-01	minor_base=C	minor_cov=2/1	new_cov=36/30	polymorphism_frequency=9.565e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=2/1	total_cov=38/31
RA	7762	.	1	1880230	0	C	T	consensus_score=230.6	frequency=1	major_base=T	major_cov=43/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/42
RA	7763	.	1	1881742	0	C	T	consensus_score=355.9	frequency=1	major_base=T	major_cov=65/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/59
RA	7764	.	1	1881865	0	A	G	bias_e_value=2109140	bias_p_value=1	consensus_score=342.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999865	major_base=G	major_cov=62/59	major_frequency=9.918e-01	minor_base=A	minor_cov=1/0	new_cov=62/59	polymorphism_frequency=9.918e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=63/59
RA	7765	.	1	1884109	0	T	C	consensus_score=344.6	frequency=1	major_base=C	major_cov=70/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=70/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=70/51
RA	7766	.	1	1884253	0	G	A	consensus_score=340.3	frequency=1	major_base=A	major_cov=58/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/66
RA	7767	.	1	1885853	0	C	T	consensus_score=291.0	frequency=1	major_base=T	major_cov=42/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/64
RA	7768	.	1	1886581	0	A	.	consensus_score=291.9	frequency=1	major_base=.	major_cov=27/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/42
RA	7769	.	1	1887045	0	A	C	consensus_score=308.9	frequency=1	major_base=C	major_cov=63/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/49
RA	7770	.	1	1887481	0	G	A	consensus_score=322.2	frequency=1	major_base=A	major_cov=57/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/60
RA	7771	.	1	1889068	0	G	A	consensus_score=263.7	frequency=1	major_base=A	major_cov=49/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/48
RA	7772	.	1	1890109	0	T	G	consensus_score=219.6	frequency=1	major_base=G	major_cov=39/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/38
RA	7773	.	1	1891263	0	T	C	consensus_score=381.7	frequency=1	major_base=C	major_cov=62/68	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/68	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/68
RA	7774	.	1	1894401	0	T	C	consensus_score=221.9	frequency=1	major_base=C	major_cov=47/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/30
RA	7775	.	1	1894439	0	C	T	consensus_score=214.1	frequency=1	major_base=T	major_cov=47/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/29
RA	7776	.	1	1895494	0	G	A	consensus_score=77.8	frequency=1	major_base=A	major_cov=16/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/14
RA	7777	.	1	1895981	0	G	A	consensus_score=224.7	frequency=1	major_base=A	major_cov=41/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/41
RA	7778	.	1	1898148	0	A	G	consensus_score=238.7	frequency=1	major_base=G	major_cov=51/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/36
RA	7779	.	1	1902150	0	T	C	consensus_score=316.1	frequency=1	major_base=C	major_cov=61/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/48
RA	7780	.	1	1903797	0	C	T	consensus_score=139.8	frequency=1	major_base=T	major_cov=20/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/32
RA	7781	.	1	1903963	0	C	T	consensus_score=246.8	frequency=1	major_base=T	major_cov=41/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/46
RA	7782	.	1	1904095	0	A	G	consensus_score=273.2	frequency=1	major_base=G	major_cov=45/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/50
RA	7783	.	1	1905182	0	A	G	consensus_score=341.6	frequency=1	major_base=G	major_cov=58/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/59
RA	7784	.	1	1905344	0	G	A	consensus_score=198.4	frequency=1	major_base=A	major_cov=36/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/38
RA	7785	.	1	1905410	0	G	C	consensus_score=200.4	frequency=1	major_base=C	major_cov=36/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/37
RA	7786	.	1	1905860	0	A	G	consensus_score=313.0	frequency=1	major_base=G	major_cov=68/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=68/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/45
RA	7787	.	1	1908824	0	C	T	consensus_score=275.0	frequency=1	major_base=T	major_cov=60/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/41
RA	7788	.	1	1908827	0	A	G	consensus_score=291.5	frequency=1	major_base=G	major_cov=60/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/41
RA	7789	.	1	1909743	0	G	A	consensus_score=224.5	frequency=1	major_base=A	major_cov=28/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/53
RA	7790	.	1	1909784	0	A	G	consensus_score=229.6	frequency=1	major_base=G	major_cov=32/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/48
RA	7791	.	1	1909813	0	C	T	consensus_score=232.9	frequency=1	major_base=T	major_cov=38/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/48
RA	7792	.	1	1910059	0	C	T	bias_e_value=1030.95	bias_p_value=0.000488802	consensus_reject=FREQUENCY_CUTOFF	consensus_score=42.3	fisher_strand_p_value=4.43414e-05	frequency=3.929e-01	ks_quality_p_value=1	major_base=C	major_cov=17/17	major_frequency=6.071e-01	minor_base=T	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=3.929e-01	polymorphism_score=16.4	prediction=polymorphism	ref_cov=17/17	total_cov=40/17
RA	7793	.	1	1910348	0	A	G	consensus_score=243.8	frequency=1	major_base=G	major_cov=41/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/48
RA	7794	.	1	1910636	0	G	A	consensus_score=321.2	frequency=1	major_base=A	major_cov=56/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/59
RA	7795	.	1	1914204	0	T	A	bias_e_value=3.92529	bias_p_value=1.86108e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=131.7	fisher_strand_p_value=1.09287e-07	frequency=2.063e-01	ks_quality_p_value=1	major_base=T	major_cov=40/10	major_frequency=7.937e-01	minor_base=A	minor_cov=0/13	new_cov=0/13	polymorphism_frequency=2.063e-01	polymorphism_score=23.5	prediction=polymorphism	ref_cov=40/10	total_cov=40/23
RA	7796	.	1	1914223	0	G	A	bias_e_value=11.0707	bias_p_value=5.24891e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=98.2	fisher_strand_p_value=3.29594e-07	frequency=2.069e-01	ks_quality_p_value=1	major_base=G	major_cov=37/9	major_frequency=7.931e-01	minor_base=A	minor_cov=0/12	new_cov=0/12	polymorphism_frequency=2.069e-01	polymorphism_score=12.2	prediction=polymorphism	ref_cov=37/9	total_cov=37/21
RA	7797	.	1	1914232	0	G	C	bias_e_value=3.17068	bias_p_value=1.5033e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=116.5	fisher_strand_p_value=8.71175e-08	frequency=2.295e-01	ks_quality_p_value=1	major_base=G	major_cov=37/10	major_frequency=7.705e-01	minor_base=C	minor_cov=0/14	new_cov=0/14	polymorphism_frequency=2.295e-01	polymorphism_score=12.9	prediction=polymorphism	ref_cov=37/10	total_cov=37/24
RA	7798	.	1	1921034	0	A	T	bias_e_value=2.3879	bias_p_value=1.13216e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=116.3	fisher_strand_p_value=6.44857e-08	frequency=2.241e-01	ks_quality_p_value=1	major_base=A	major_cov=8/37	major_frequency=7.759e-01	minor_base=T	minor_cov=13/0	new_cov=13/0	polymorphism_frequency=2.241e-01	polymorphism_score=10.2	prediction=polymorphism	ref_cov=8/37	total_cov=24/37
RA	7799	.	1	1921052	0	A	T	bias_e_value=0.0851617	bias_p_value=4.03774e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=127.6	fisher_strand_p_value=1.91607e-09	frequency=2.727e-01	ks_quality_p_value=1	major_base=A	major_cov=10/38	major_frequency=7.273e-01	minor_base=T	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.727e-01	polymorphism_score=13.7	prediction=polymorphism	ref_cov=10/38	total_cov=28/38
RA	7800	.	1	1921229	0	T	C	consensus_score=284.3	frequency=1	major_base=C	major_cov=50/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/48
RA	7801	.	1	1924577	0	A	C	consensus_score=278.3	frequency=1	major_base=C	major_cov=49/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/48
RA	7802	.	1	1930432	0	G	A	consensus_score=207.0	frequency=1	major_base=A	major_cov=42/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/31
RA	7803	.	1	1930880	0	C	A	consensus_score=272.2	frequency=1	major_base=A	major_cov=37/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/59
RA	7804	.	1	1933590	0	G	A	bias_e_value=2.24133	bias_p_value=1.06268e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=89.7	fisher_strand_p_value=6.09838e-08	frequency=3.171e-01	ks_quality_p_value=0.98874	major_base=G	major_cov=33/23	major_frequency=6.829e-01	minor_base=A	minor_cov=0/26	new_cov=0/26	polymorphism_frequency=3.171e-01	polymorphism_score=15.3	prediction=polymorphism	ref_cov=33/23	total_cov=33/49
RA	7805	.	1	1934277	0	A	.	consensus_score=318.0	frequency=1	major_base=.	major_cov=33/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/42
RA	7806	.	1	1934477	0	G	T	consensus_score=229.5	frequency=1	major_base=T	major_cov=45/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/37
RA	7807	.	1	1935855	0	G	C	consensus_score=223.9	frequency=1	major_base=C	major_cov=40/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/39
RA	7808	.	1	1937748	0	T	A	bias_e_value=4.51695e-09	bias_p_value=2.1416e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=103.6	fisher_strand_p_value=5.57333e-17	frequency=4.103e-01	ks_quality_p_value=1	major_base=T	major_cov=5/41	major_frequency=5.897e-01	minor_base=A	minor_cov=32/0	new_cov=32/0	polymorphism_frequency=4.103e-01	polymorphism_score=36.7	prediction=polymorphism	ref_cov=5/41	total_cov=37/41
RA	7809	.	1	1937777	0	T	A	bias_e_value=0.0533428	bias_p_value=2.52912e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=154.5	fisher_strand_p_value=1.17285e-09	frequency=2.530e-01	ks_quality_p_value=1	major_base=T	major_cov=17/45	major_frequency=7.470e-01	minor_base=A	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.530e-01	polymorphism_score=13.5	prediction=polymorphism	ref_cov=17/45	total_cov=39/45
RA	7810	.	1	1937819	0	T	A	bias_e_value=1.55832e-06	bias_p_value=7.38838e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=148.2	fisher_strand_p_value=2.2795e-14	frequency=3.333e-01	ks_quality_p_value=1	major_base=T	major_cov=11/47	major_frequency=6.667e-01	minor_base=A	minor_cov=29/0	new_cov=29/0	polymorphism_frequency=3.333e-01	polymorphism_score=23.7	prediction=polymorphism	ref_cov=11/47	total_cov=40/47
RA	7811	.	1	1938508	0	T	G	bias_e_value=1.23326e-07	bias_p_value=5.84721e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=186.9	fisher_strand_p_value=1.66938e-15	frequency=2.788e-01	ks_quality_p_value=1	major_base=T	major_cov=14/61	major_frequency=7.212e-01	minor_base=G	minor_cov=29/0	new_cov=29/0	polymorphism_frequency=2.788e-01	polymorphism_score=21.1	prediction=polymorphism	ref_cov=14/61	total_cov=43/61
RA	7812	.	1	1941702	0	G	A	bias_e_value=2109120	bias_p_value=0.999988	consensus_score=209.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.995074	major_base=A	major_cov=35/45	major_frequency=9.877e-01	minor_base=C	minor_cov=0/1	new_cov=35/45	polymorphism_frequency=9.877e-01	polymorphism_score=-5.9	prediction=consensus	ref_cov=0/0	total_cov=35/46
RA	7813	.	1	1943452	0	T	C	consensus_score=250.2	frequency=1	major_base=C	major_cov=52/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/38
RA	7814	.	1	1943848	0	G	A	consensus_score=226.8	frequency=1	major_base=A	major_cov=47/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/36
RA	7815	.	1	1945433	0	C	G	consensus_score=215.8	frequency=1	major_base=G	major_cov=35/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/44
RA	7816	.	1	1951405	0	G	A	consensus_score=187.2	frequency=1	major_base=A	major_cov=36/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/30
RA	7817	.	1	1953601	0	G	A	consensus_score=217.8	frequency=1	major_base=A	major_cov=45/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/36
RA	7818	.	1	1954243	0	T	G	consensus_score=219.5	frequency=1	major_base=G	major_cov=32/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/47
RA	7819	.	1	1956128	0	C	T	consensus_score=134.2	frequency=1	major_base=T	major_cov=25/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/25
RA	7820	.	1	1956178	0	T	G	consensus_score=102.4	frequency=1	major_base=G	major_cov=19/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/24
RA	7821	.	1	1956193	0	T	A	bias_e_value=181.561	bias_p_value=8.60829e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=40.1	fisher_strand_p_value=6.66333e-06	frequency=3.667e-01	ks_quality_p_value=1	major_base=T	major_cov=16/3	major_frequency=6.333e-01	minor_base=A	minor_cov=0/11	new_cov=0/11	polymorphism_frequency=3.667e-01	polymorphism_score=11.5	prediction=polymorphism	ref_cov=16/3	total_cov=16/14
RA	7822	.	1	1964704	0	C	T	consensus_score=238.5	frequency=1	major_base=T	major_cov=40/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/47
RA	7823	.	1	1966248	0	G	A	consensus_score=212.3	frequency=1	major_base=A	major_cov=29/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/46
RA	7824	.	1	1971600	0	C	T	consensus_score=267.1	frequency=1	major_base=T	major_cov=49/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/48
RA	7825	.	1	1972861	0	G	A	consensus_score=223.6	frequency=1	major_base=A	major_cov=39/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/41
RA	7826	.	1	1972936	0	A	G	consensus_score=161.3	frequency=1	major_base=G	major_cov=31/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/28
RA	7827	.	1	1973735	0	A	G	consensus_score=114.6	frequency=1	major_base=G	major_cov=16/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/26
RA	7828	.	1	1976555	0	T	C	consensus_score=242.8	frequency=1	major_base=C	major_cov=29/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/55
RA	7829	.	1	1983589	0	G	A	consensus_score=174.5	frequency=1	major_base=A	major_cov=26/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/36
RA	7830	.	1	1985101	0	T	G	bias_e_value=1.23676e-06	bias_p_value=5.86381e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=135.8	fisher_strand_p_value=1.79592e-14	frequency=3.483e-01	ks_quality_p_value=1	major_base=T	major_cov=12/46	major_frequency=6.517e-01	minor_base=G	minor_cov=31/0	new_cov=31/0	polymorphism_frequency=3.483e-01	polymorphism_score=13.7	prediction=polymorphism	ref_cov=12/46	total_cov=43/46
RA	7831	.	1	1995937	0	C	T	consensus_score=165.2	frequency=1	major_base=T	major_cov=26/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/35
RA	7832	.	1	2000934	0	G	A	consensus_score=118.1	frequency=1	major_base=A	major_cov=21/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/21
RA	7833	.	1	2001203	0	T	C	consensus_score=182.1	frequency=1	major_base=C	major_cov=36/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/31
RA	7834	.	1	2002377	0	C	T	consensus_score=150.1	frequency=1	major_base=T	major_cov=26/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/30
RA	7835	.	1	2006940	0	G	A	consensus_score=110.6	frequency=1	major_base=A	major_cov=21/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/21
RA	7836	.	1	2007837	0	G	A	consensus_score=221.1	frequency=1	major_base=A	major_cov=32/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/49
RA	7837	.	1	2008174	0	C	A	consensus_score=173.3	frequency=1	major_base=A	major_cov=25/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/39
RA	7838	.	1	2009363	0	T	C	consensus_score=58.6	frequency=1	major_base=C	major_cov=14/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/8
RA	7839	.	1	2010509	0	A	G	consensus_score=191.3	frequency=1	major_base=G	major_cov=34/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/36
RA	7840	.	1	2011919	0	T	C	consensus_score=165.1	frequency=1	major_base=C	major_cov=26/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/35
RA	7841	.	1	2012053	0	C	T	consensus_score=146.0	frequency=1	major_base=T	major_cov=26/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/29
RA	7842	.	1	2012569	0	A	G	consensus_score=144.7	frequency=1	major_base=G	major_cov=23/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/28
RA	7843	.	1	2013501	0	A	C	consensus_score=143.7	frequency=1	major_base=C	major_cov=31/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/21
RA	7844	.	1	2016763	0	A	G	consensus_score=241.8	frequency=1	major_base=G	major_cov=45/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/43
RA	7845	.	1	2019263	0	A	G	consensus_score=211.9	frequency=1	major_base=G	major_cov=33/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/42
RA	7846	.	1	2023679	0	C	T	consensus_score=218.4	frequency=1	major_base=T	major_cov=41/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/39
RA	7847	.	1	2025141	0	G	A	consensus_score=177.4	frequency=1	major_base=A	major_cov=37/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/29
RA	7848	.	1	2025370	0	A	G	consensus_score=226.8	frequency=1	major_base=G	major_cov=45/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/38
RA	7849	.	1	2026508	0	G	A	consensus_score=214.6	frequency=1	major_base=A	major_cov=44/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/35
RA	7850	.	1	2027051	0	G	A	consensus_score=228.2	frequency=1	major_base=A	major_cov=35/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/47
RA	7851	.	1	2027602	0	G	A	consensus_score=159.4	frequency=1	major_base=A	major_cov=25/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/34
RA	7852	.	1	2028219	0	C	A	bias_e_value=0.000200086	bias_p_value=9.48661e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=165.1	fisher_strand_p_value=3.4637e-12	frequency=2.778e-01	ks_quality_p_value=1	major_base=C	major_cov=15/50	major_frequency=7.222e-01	minor_base=A	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.778e-01	polymorphism_score=19.6	prediction=polymorphism	ref_cov=15/50	total_cov=40/50
RA	7853	.	1	2028855	0	A	G	consensus_score=192.9	frequency=1	major_base=G	major_cov=29/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/38
RA	7854	.	1	2030104	0	T	G	consensus_score=83.0	frequency=1	major_base=G	major_cov=21/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/9
RA	7855	.	1	2032289	0	G	A	consensus_score=234.6	frequency=1	major_base=A	major_cov=41/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/44
RA	7856	.	1	2032921	0	C	T	consensus_score=174.7	frequency=1	major_base=T	major_cov=38/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/27
RA	7857	.	1	2033172	0	C	G	bias_e_value=0.000280186	bias_p_value=1.32844e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=119.2	fisher_strand_p_value=4.91301e-12	frequency=2.727e-01	ks_quality_p_value=1	major_base=C	major_cov=5/43	major_frequency=7.273e-01	minor_base=G	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.727e-01	polymorphism_score=11.8	prediction=polymorphism	ref_cov=5/43	total_cov=23/43
RA	7858	.	1	2033762	0	C	T	consensus_score=171.0	frequency=1	major_base=T	major_cov=32/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/31
RA	7859	.	1	2035352	0	G	A	consensus_score=198.5	frequency=1	major_base=A	major_cov=28/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/45
RA	7860	.	1	2037478	0	G	A	consensus_score=83.1	frequency=1	major_base=A	major_cov=14/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/18
RA	7861	.	1	2037818	0	T	A	bias_e_value=1.35305	bias_p_value=6.41514e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=148.2	fisher_strand_p_value=3.53284e-08	frequency=2.222e-01	ks_quality_p_value=1	major_base=T	major_cov=42/14	major_frequency=7.778e-01	minor_base=A	minor_cov=0/16	new_cov=0/16	polymorphism_frequency=2.222e-01	polymorphism_score=10.5	prediction=polymorphism	ref_cov=42/14	total_cov=42/30
RA	7862	.	1	2038102	0	C	T	consensus_score=230.1	frequency=1	major_base=T	major_cov=45/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/40
RA	7863	.	1	2039585	0	T	C	consensus_score=260.8	frequency=1	major_base=C	major_cov=54/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/37
RA	7864	.	1	2039855	0	G	A	consensus_score=112.5	frequency=1	major_base=A	major_cov=17/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/24
RA	7865	.	1	2045127	0	G	T	consensus_score=257.5	frequency=1	major_base=T	major_cov=47/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/48
RA	7866	.	1	2045633	0	G	A	consensus_score=214.7	frequency=1	major_base=A	major_cov=28/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/51
RA	7867	.	1	2046521	0	G	A	consensus_score=270.9	frequency=1	major_base=A	major_cov=55/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/42
RA	7868	.	1	2046770	0	T	C	consensus_score=169.7	frequency=1	major_base=C	major_cov=28/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/32
RA	7869	.	1	2047168	0	A	G	consensus_score=196.0	frequency=1	major_base=G	major_cov=39/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/32
RA	7870	.	1	2047520	0	A	G	consensus_score=252.0	frequency=1	major_base=G	major_cov=45/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/44
RA	7871	.	1	2048056	1	.	T	bias_e_value=1857320	bias_p_value=0.880604	consensus_score=204.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.553013	major_base=T	major_cov=38/35	major_frequency=9.865e-01	minor_base=.	minor_cov=1/0	new_cov=38/35	polymorphism_frequency=9.865e-01	polymorphism_score=-3.3	prediction=consensus	ref_cov=1/0	total_cov=39/35
RA	7872	.	1	2048830	0	A	G	consensus_score=204.0	frequency=1	major_base=G	major_cov=42/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/29
RA	7873	.	1	2051793	0	G	A	consensus_score=235.4	frequency=1	major_base=A	major_cov=36/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/49
RA	7874	.	1	2053961	0	C	A	consensus_score=220.9	frequency=1	major_base=A	major_cov=34/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/46
RA	7875	.	1	2054379	0	C	T	consensus_score=144.7	frequency=1	major_base=T	major_cov=30/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/24
RA	7876	.	1	2055319	0	C	A	consensus_score=185.8	frequency=1	major_base=A	major_cov=38/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/28
RA	7877	.	1	2056438	0	A	G	consensus_score=192.3	frequency=1	major_base=G	major_cov=40/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/28
RA	7878	.	1	2057262	0	T	C	consensus_score=188.4	frequency=1	major_base=C	major_cov=45/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/22
RA	7879	.	1	2060754	0	G	A	consensus_score=201.2	frequency=1	major_base=A	major_cov=34/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/40
RA	7880	.	1	2060926	0	G	A	consensus_score=198.2	frequency=1	major_base=A	major_cov=45/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/29
RA	7881	.	1	2062615	0	T	C	consensus_score=183.9	frequency=1	major_base=C	major_cov=27/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/37
RA	7882	.	1	2062983	0	G	A	bias_e_value=1544770	bias_p_value=0.732417	consensus_score=141.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.364553	major_base=A	major_cov=28/25	major_frequency=9.815e-01	minor_base=G	minor_cov=1/0	new_cov=28/25	polymorphism_frequency=9.815e-01	polymorphism_score=-4.6	prediction=consensus	ref_cov=1/0	total_cov=29/25
RA	7883	.	1	2063524	0	G	A	consensus_score=234.3	frequency=1	major_base=A	major_cov=48/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/37
RA	7884	.	1	2063623	0	T	G	consensus_score=289.4	frequency=1	major_base=G	major_cov=48/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/52
RA	7885	.	1	2063677	0	G	A	consensus_score=239.5	frequency=1	major_base=A	major_cov=41/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/47
RA	7886	.	1	2064606	0	A	G	consensus_score=222.4	frequency=1	major_base=G	major_cov=42/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/36
RA	7887	.	1	2066310	0	G	A	consensus_score=265.9	frequency=1	major_base=A	major_cov=48/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/49
RA	7888	.	1	2066669	0	A	G	consensus_score=201.1	frequency=1	major_base=G	major_cov=39/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/34
RA	7889	.	1	2069301	0	G	C	bias_e_value=1289940	bias_p_value=0.611595	consensus_score=159.1	fisher_strand_p_value=0.262295	frequency=1	ks_quality_p_value=0.995094	major_base=C	major_cov=15/45	major_frequency=9.836e-01	minor_base=T	minor_cov=1/0	new_cov=15/45	polymorphism_frequency=9.836e-01	polymorphism_score=-5.7	prediction=consensus	ref_cov=0/0	total_cov=17/45
RA	7890	.	1	2070718	0	A	G	consensus_score=297.8	frequency=1	major_base=G	major_cov=58/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/46
RA	7891	.	1	2070761	0	T	C	consensus_score=337.8	frequency=1	major_base=C	major_cov=67/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=67/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/50
RA	7892	.	1	2073215	0	A	G	consensus_score=324.4	frequency=1	major_base=G	major_cov=50/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/62
RA	7893	.	1	2073880	0	A	G	bias_e_value=219033	bias_p_value=0.103849	consensus_score=242.7	fisher_strand_p_value=0.0214468	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=52/42	major_frequency=9.495e-01	minor_base=C	minor_cov=0/5	new_cov=52/42	polymorphism_frequency=9.495e-01	polymorphism_score=-6.3	prediction=consensus	ref_cov=0/0	total_cov=52/47
RA	7894	.	1	2074028	0	C	A	bias_e_value=0.589493	bias_p_value=2.79494e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=143.9	fisher_strand_p_value=1.46819e-08	frequency=2.469e-01	ks_quality_p_value=1	major_base=C	major_cov=42/19	major_frequency=7.531e-01	minor_base=A	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.469e-01	polymorphism_score=13.7	prediction=polymorphism	ref_cov=42/19	total_cov=42/39
RA	7895	.	1	2074044	0	C	A	bias_e_value=0.113697	bias_p_value=5.39067e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=81.9	fisher_strand_p_value=2.59547e-09	frequency=3.676e-01	ks_quality_p_value=1	major_base=C	major_cov=30/13	major_frequency=6.324e-01	minor_base=A	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=3.676e-01	polymorphism_score=25.4	prediction=polymorphism	ref_cov=30/13	total_cov=30/38
RA	7896	.	1	2074800	0	G	A	consensus_score=231.8	frequency=1	major_base=A	major_cov=42/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/45
RA	7897	.	1	2076967	0	T	C	bias_e_value=1967470	bias_p_value=0.932829	consensus_score=213.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.656625	major_base=C	major_cov=34/44	major_frequency=9.873e-01	minor_base=.	minor_cov=0/1	new_cov=34/44	polymorphism_frequency=9.873e-01	polymorphism_score=-3.1	prediction=consensus	ref_cov=0/0	total_cov=34/45
RA	7898	.	1	2077150	0	A	G	consensus_score=201.9	frequency=1	major_base=G	major_cov=29/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/44
RA	7899	.	1	2077522	0	T	C	consensus_score=197.1	frequency=1	major_base=C	major_cov=31/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/40
RA	7900	.	1	2078319	0	T	C	consensus_score=252.3	frequency=1	major_base=C	major_cov=39/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/48
RA	7901	.	1	2078323	0	T	C	consensus_score=252.3	frequency=1	major_base=C	major_cov=39/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/48
RA	7902	.	1	2078633	0	A	G	consensus_score=213.4	frequency=1	major_base=G	major_cov=41/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/35
RA	7903	.	1	2078883	0	T	C	consensus_score=250.8	frequency=1	major_base=C	major_cov=44/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/45
RA	7904	.	1	2080789	0	G	T	consensus_score=208.3	frequency=1	major_base=T	major_cov=34/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/43
RA	7905	.	1	2084944	0	G	A	consensus_score=270.9	frequency=1	major_base=A	major_cov=54/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/45
RA	7906	.	1	2085121	0	T	C	consensus_score=245.9	frequency=1	major_base=C	major_cov=38/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/48
RA	7907	.	1	2085140	0	T	G	bias_e_value=1651540	bias_p_value=0.783038	consensus_score=234.1	fisher_strand_p_value=0.418605	frequency=1	ks_quality_p_value=0.999726	major_base=G	major_cov=35/50	major_frequency=9.884e-01	minor_base=A	minor_cov=1/0	new_cov=35/50	polymorphism_frequency=9.884e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/50
RA	7908	.	1	2085316	0	T	G	consensus_score=161.3	frequency=1	major_base=G	major_cov=14/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/43
RA	7909	.	1	2086148	0	A	G	bias_e_value=1653800	bias_p_value=0.784112	consensus_score=209.8	fisher_strand_p_value=0.421053	frequency=1	ks_quality_p_value=0.996847	major_base=G	major_cov=31/44	major_frequency=9.868e-01	minor_base=T	minor_cov=1/0	new_cov=31/44	polymorphism_frequency=9.868e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/44
RA	7910	.	1	2087457	0	T	C	consensus_score=274.5	frequency=1	major_base=C	major_cov=57/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/42
RA	7911	.	1	2089333	0	A	G	consensus_score=274.0	frequency=1	major_base=G	major_cov=42/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/56
RA	7912	.	1	2090800	0	A	G	consensus_score=191.0	frequency=1	major_base=G	major_cov=45/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/25
RA	7913	.	1	2091802	0	A	G	consensus_score=196.2	frequency=1	major_base=G	major_cov=35/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/33
RA	7914	.	1	2091803	0	C	A	consensus_score=181.5	frequency=1	major_base=A	major_cov=35/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/33
RA	7915	.	1	2091969	0	T	C	consensus_score=250.9	frequency=1	major_base=C	major_cov=33/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/57
RA	7916	.	1	2092494	0	T	A	bias_e_value=32.2154	bias_p_value=1.52742e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=138.6	fisher_strand_p_value=1.03324e-06	frequency=2.568e-01	ks_quality_p_value=1	major_base=T	major_cov=34/21	major_frequency=7.432e-01	minor_base=A	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=2.568e-01	polymorphism_score=12.5	prediction=polymorphism	ref_cov=34/21	total_cov=34/40
RA	7917	.	1	2092853	0	A	C	consensus_score=156.1	frequency=1	major_base=C	major_cov=50/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/7
RA	7918	.	1	2094923	0	C	A	consensus_score=214.8	frequency=1	major_base=A	major_cov=36/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/41
RA	7919	.	1	2095199	0	G	A	bias_e_value=0.000111954	bias_p_value=5.30801e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=151.2	fisher_strand_p_value=1.89632e-12	frequency=2.547e-01	ks_quality_p_value=1	major_base=G	major_cov=58/21	major_frequency=7.453e-01	minor_base=A	minor_cov=0/27	new_cov=0/27	polymorphism_frequency=2.547e-01	polymorphism_score=17.4	prediction=polymorphism	ref_cov=58/21	total_cov=58/48
RA	7920	.	1	2095204	0	A	C	bias_e_value=3.34898e-07	bias_p_value=1.58784e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=175.4	fisher_strand_p_value=4.67045e-15	frequency=3.365e-01	ks_quality_p_value=1	major_base=A	major_cov=55/14	major_frequency=6.635e-01	minor_base=C	minor_cov=1/34	new_cov=1/34	polymorphism_frequency=3.365e-01	polymorphism_score=17.4	prediction=polymorphism	ref_cov=55/14	total_cov=56/48
RA	7921	.	1	2095224	0	A	C	bias_e_value=9.44214e-12	bias_p_value=4.47677e-18	consensus_reject=FREQUENCY_CUTOFF	consensus_score=156.7	fisher_strand_p_value=1.00042e-19	frequency=3.737e-01	ks_quality_p_value=1	major_base=A	major_cov=54/8	major_frequency=6.263e-01	minor_base=C	minor_cov=0/37	new_cov=0/37	polymorphism_frequency=3.737e-01	polymorphism_score=15.1	prediction=polymorphism	ref_cov=54/8	total_cov=54/45
RA	7922	.	1	2097203	0	G	C	consensus_score=259.4	frequency=1	major_base=C	major_cov=40/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/54
RA	7923	.	1	2097370	0	T	C	consensus_score=220.5	frequency=1	major_base=C	major_cov=41/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/38
RA	7924	.	1	2098258	0	A	G	consensus_score=250.0	frequency=1	major_base=G	major_cov=38/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/51
RA	7925	.	1	2098646	0	G	A	consensus_score=220.9	frequency=1	major_base=A	major_cov=39/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/43
RA	7926	.	1	2098929	0	T	C	consensus_score=184.1	frequency=1	major_base=C	major_cov=34/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/32
RA	7927	.	1	2098958	0	T	C	consensus_score=171.4	frequency=1	major_base=C	major_cov=32/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/31
RA	7928	.	1	2101421	0	G	A	bias_e_value=2109140	bias_p_value=1	consensus_score=278.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=51/52	major_frequency=9.904e-01	minor_base=G	minor_cov=0/1	new_cov=51/52	polymorphism_frequency=9.904e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=51/53
RA	7929	.	1	2102281	0	A	G	consensus_score=184.6	frequency=1	major_base=G	major_cov=36/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/32
RA	7930	.	1	2102865	0	T	C	consensus_score=231.2	frequency=1	major_base=C	major_cov=44/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/39
RA	7931	.	1	2106161	0	T	G	consensus_score=253.7	frequency=1	major_base=G	major_cov=48/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/40
RA	7932	.	1	2107649	0	G	T	consensus_score=296.7	frequency=1	major_base=T	major_cov=46/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/62
RA	7933	.	1	2108052	0	T	C	consensus_score=177.0	frequency=1	major_base=C	major_cov=41/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/22
MC	7934	.	1	74782	74802	0	0	left_inside_cov=0	left_outside_cov=55	right_inside_cov=0	right_outside_cov=56
MC	7935	.	1	75186	76645	0	0	left_inside_cov=0	left_outside_cov=115	right_inside_cov=0	right_outside_cov=115
MC	7936	.	1	77030	77068	0	0	left_inside_cov=0	left_outside_cov=122	right_inside_cov=0	right_outside_cov=121
MC	7937	.	1	111888	111904	0	0	left_inside_cov=0	left_outside_cov=61	right_inside_cov=0	right_outside_cov=61
MC	7938	.	1	171194	171199	0	0	left_inside_cov=0	left_outside_cov=116	right_inside_cov=0	right_outside_cov=115
MC	7939	.	1	197628	199153	0	0	left_inside_cov=0	left_outside_cov=118	right_inside_cov=1	right_outside_cov=118
MC	7940	.	1	214396	214783	0	0	left_inside_cov=0	left_outside_cov=114	right_inside_cov=0	right_outside_cov=114
MC	7941	.	1	261967	267508	5541	0	left_inside_cov=22	left_outside_cov=24	right_inside_cov=23	right_outside_cov=24
MC	7942	.	1	274804	274866	0	0	left_inside_cov=0	left_outside_cov=60	right_inside_cov=0	right_outside_cov=60
MC	7943	.	1	293098	293116	0	0	left_inside_cov=0	left_outside_cov=85	right_inside_cov=0	right_outside_cov=85
MC	7944	.	1	295565	295566	0	0	left_inside_cov=0	left_outside_cov=83	right_inside_cov=0	right_outside_cov=84
MC	7945	.	1	351374	351482	0	0	left_inside_cov=0	left_outside_cov=84	right_inside_cov=23	right_outside_cov=26
MC	7946	.	1	387959	388351	0	0	left_inside_cov=0	left_outside_cov=121	right_inside_cov=0	right_outside_cov=121
MC	7947	.	1	407490	408818	0	0	left_inside_cov=0	left_outside_cov=148	right_inside_cov=0	right_outside_cov=148
MC	7948	.	1	411367	411411	0	0	left_inside_cov=0	left_outside_cov=27	right_inside_cov=0	right_outside_cov=49
MC	7949	.	1	411514	416987	5473	0	left_inside_cov=21	left_outside_cov=24	right_inside_cov=22	right_outside_cov=24
MC	7950	.	1	423259	423311	0	0	left_inside_cov=0	left_outside_cov=95	right_inside_cov=0	right_outside_cov=96
MC	7951	.	1	426829	428437	0	0	left_inside_cov=0	left_outside_cov=132	right_inside_cov=0	right_outside_cov=130
MC	7952	.	1	429393	438476	0	0	left_inside_cov=0	left_outside_cov=77	right_inside_cov=0	right_outside_cov=77
MC	7953	.	1	508612	508615	0	0	left_inside_cov=0	left_outside_cov=166	right_inside_cov=0	right_outside_cov=166
MC	7954	.	1	617645	617647	0	0	left_inside_cov=0	left_outside_cov=83	right_inside_cov=0	right_outside_cov=83
MC	7955	.	1	682082	682605	0	522	left_inside_cov=0	left_outside_cov=120	right_inside_cov=22	right_outside_cov=25
MC	7956	.	1	691648	692107	0	28	left_inside_cov=20	left_outside_cov=34	right_inside_cov=22	right_outside_cov=24
MC	7957	.	1	699240	704592	5352	0	left_inside_cov=22	left_outside_cov=24	right_inside_cov=23	right_outside_cov=24
MC	7958	.	1	773471	780284	0	0	left_inside_cov=23	left_outside_cov=25	right_inside_cov=21	right_outside_cov=24
MC	7959	.	1	813939	813948	0	0	left_inside_cov=0	left_outside_cov=91	right_inside_cov=0	right_outside_cov=92
MC	7960	.	1	849898	851688	0	0	left_inside_cov=23	left_outside_cov=24	right_inside_cov=22	right_outside_cov=26
MC	7961	.	1	861111	861374	0	0	left_inside_cov=23	left_outside_cov=24	right_inside_cov=23	right_outside_cov=25
MC	7962	.	1	933434	935298	0	0	left_inside_cov=0	left_outside_cov=102	right_inside_cov=0	right_outside_cov=102
MC	7963	.	1	998622	1000065	0	0	left_inside_cov=0	left_outside_cov=87	right_inside_cov=23	right_outside_cov=24
MC	7964	.	1	1000682	1002087	0	0	left_inside_cov=23	left_outside_cov=25	right_inside_cov=0	right_outside_cov=87
MC	7965	.	1	1005107	1005980	0	0	left_inside_cov=23	left_outside_cov=24	right_inside_cov=22	right_outside_cov=25
MC	7966	.	1	1010171	1010547	0	0	left_inside_cov=0	left_outside_cov=68	right_inside_cov=0	right_outside_cov=68
MC	7967	.	1	1031701	1031773	0	0	left_inside_cov=21	left_outside_cov=33	right_inside_cov=0	right_outside_cov=62
MC	7968	.	1	1035044	1040397	5353	0	left_inside_cov=23	left_outside_cov=26	right_inside_cov=23	right_outside_cov=24
MC	7969	.	1	1131955	1137526	5555	0	left_inside_cov=23	left_outside_cov=24	right_inside_cov=11	right_outside_cov=124
MC	7970	.	1	1140758	1140802	0	0	left_inside_cov=0	left_outside_cov=60	right_inside_cov=0	right_outside_cov=60
MC	7971	.	1	1144237	1148427	0	0	left_inside_cov=23	left_outside_cov=24	right_inside_cov=22	right_outside_cov=24
MC	7972	.	1	1155772	1155774	0	0	left_inside_cov=0	left_outside_cov=46	right_inside_cov=0	right_outside_cov=46
MC	7973	.	1	1195938	1197650	0	0	left_inside_cov=0	left_outside_cov=81	right_inside_cov=18	right_outside_cov=24
MC	7974	.	1	1199280	1201734	0	0	left_inside_cov=0	left_outside_cov=56	right_inside_cov=0	right_outside_cov=57
MC	7975	.	1	1202363	1202675	0	0	left_inside_cov=0	left_outside_cov=72	right_inside_cov=2	right_outside_cov=74
MC	7976	.	1	1269999	1271952	0	1093	left_inside_cov=0	left_outside_cov=51	right_inside_cov=23	right_outside_cov=24
MC	7977	.	1	1284792	1284801	0	0	left_inside_cov=0	left_outside_cov=66	right_inside_cov=0	right_outside_cov=66
MC	7978	.	1	1306891	1306905	0	0	left_inside_cov=0	left_outside_cov=53	right_inside_cov=0	right_outside_cov=52
MC	7979	.	1	1308177	1308187	0	0	left_inside_cov=0	left_outside_cov=32	right_inside_cov=0	right_outside_cov=32
MC	7980	.	1	1308630	1309764	0	0	left_inside_cov=23	left_outside_cov=24	right_inside_cov=23	right_outside_cov=24
MC	7981	.	1	1322748	1323596	0	0	left_inside_cov=0	left_outside_cov=33	right_inside_cov=0	right_outside_cov=33
MC	7982	.	1	1325601	1325932	0	0	left_inside_cov=0	left_outside_cov=31	right_inside_cov=0	right_outside_cov=35
MC	7983	.	1	1328979	1329619	0	0	left_inside_cov=0	left_outside_cov=41	right_inside_cov=0	right_outside_cov=41
MC	7984	.	1	1329668	1329941	0	0	left_inside_cov=23	left_outside_cov=24	right_inside_cov=23	right_outside_cov=24
MC	7985	.	1	1410874	1413452	0	0	left_inside_cov=22	left_outside_cov=32	right_inside_cov=23	right_outside_cov=24
MC	7986	.	1	1415503	1415917	0	0	left_inside_cov=0	left_outside_cov=38	right_inside_cov=0	right_outside_cov=49
MC	7987	.	1	1425818	1428150	0	0	left_inside_cov=23	left_outside_cov=24	right_inside_cov=22	right_outside_cov=24
MC	7988	.	1	1429477	1432093	0	0	left_inside_cov=22	left_outside_cov=24	right_inside_cov=23	right_outside_cov=24
MC	7989	.	1	1432237	1432252	0	0	left_inside_cov=23	left_outside_cov=25	right_inside_cov=23	right_outside_cov=24
MC	7990	.	1	1461807	1461874	0	0	left_inside_cov=0	left_outside_cov=87	right_inside_cov=0	right_outside_cov=88
MC	7991	.	1	1481728	1483389	0	0	left_inside_cov=22	left_outside_cov=26	right_inside_cov=23	right_outside_cov=24
MC	7992	.	1	1664046	1669567	5521	0	left_inside_cov=23	left_outside_cov=24	right_inside_cov=22	right_outside_cov=24
MC	7993	.	1	1733740	1734011	0	0	left_inside_cov=22	left_outside_cov=24	right_inside_cov=23	right_outside_cov=24
MC	7994	.	1	1770571	1773587	0	0	left_inside_cov=22	left_outside_cov=25	right_inside_cov=23	right_outside_cov=29
MC	7995	.	1	1820977	1820991	0	0	left_inside_cov=0	left_outside_cov=62	right_inside_cov=0	right_outside_cov=62
MC	7996	.	1	1837838	1838464	0	0	left_inside_cov=23	left_outside_cov=24	right_inside_cov=23	right_outside_cov=25
MC	7997	.	1	1863449	1864321	0	0	left_inside_cov=23	left_outside_cov=24	right_inside_cov=21	right_outside_cov=24
MC	7998	.	1	1990509	1992169	0	0	left_inside_cov=23	left_outside_cov=24	right_inside_cov=21	right_outside_cov=26
MC	7999	.	1	2028869	2028874	0	0	left_inside_cov=0	left_outside_cov=78	right_inside_cov=0	right_outside_cov=78
MC	8000	.	1	2034228	2035228	0	0	left_inside_cov=0	left_outside_cov=78	right_inside_cov=0	right_outside_cov=77
JC	8001	.	1	1	1	1	2109143	-1	0	alignment_overlap=0	circular_chromosome=1	coverage_minus=45	coverage_plus=51	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=214	key=1__1__1__1__2109143__-1__0____251__251__0__0	max_left=246	max_left_minus=246	max_left_plus=243	max_min_left=123	max_min_left_minus=112	max_min_left_plus=123	max_min_right=124	max_min_right_minus=124	max_min_right_plus=120	max_pos_hash_score=430	max_right=250	max_right_minus=250	max_right_plus=249	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.09	new_junction_read_count=96	polymorphism_frequency=1.000e+00	pos_hash_score=70	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=96
JC	8002	.	1	5611	-1	1	5821	-1	0	alignment_overlap=9	coverage_minus=3	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=NA	junction_possible_overlap_registers=205	key=1__5611__-1__1__5830__-1__9____251__251__1__1	max_left=138	max_left_minus=138	max_left_plus=51	max_min_left=112	max_min_left_minus=112	max_min_left_plus=51	max_min_right=117	max_min_right_minus=117	max_min_right_plus=0	max_pos_hash_score=412	max_right=191	max_right_minus=131	max_right_plus=191	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=NA	pos_hash_score=4	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=9	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=4
JC	8003	.	1	6717	1	1	7236	1	0	alignment_overlap=14	coverage_minus=3	coverage_plus=0	flanking_left=251	flanking_right=251	frequency=3.168e-02	junction_possible_overlap_registers=200	key=1__6717__1__1__7222__1__14____251__251__0__0	max_left=180	max_left_minus=180	max_left_plus=0	max_min_left=82	max_min_left_minus=82	max_min_left_plus=0	max_min_right=56	max_min_right_minus=56	max_min_right_plus=0	max_pos_hash_score=402	max_right=191	max_right_minus=191	max_right_plus=0	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.168e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.32	side_1_overlap=14	side_1_possible_overlap_registers=214	side_1_read_count=116	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.91	side_2_overlap=0	side_2_possible_overlap_registers=200	side_2_read_count=75	side_2_redundant=0	total_non_overlap_reads=3
JC	8004	.	1	26868	1	1	1307170	1	0	alignment_overlap=1	coverage_minus=26	coverage_plus=23	flanking_left=251	flanking_right=251	frequency=7.077e-01	junction_possible_overlap_registers=213	key=1__26868__1__1__1307169__1__1____251__251__0__0	max_left=240	max_left_minus=217	max_left_plus=240	max_min_left=115	max_min_left_minus=107	max_min_left_plus=115	max_min_right=123	max_min_right_minus=123	max_min_right_plus=107	max_pos_hash_score=428	max_right=215	max_right_minus=189	max_right_plus=215	neg_log10_pos_hash_p_value=1.1	new_junction_coverage=0.59	new_junction_read_count=52	polymorphism_frequency=7.077e-01	pos_hash_score=37	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.12	side_1_overlap=1	side_1_possible_overlap_registers=214	side_1_read_count=11	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.36	side_2_overlap=0	side_2_possible_overlap_registers=213	side_2_read_count=32	side_2_redundant=0	total_non_overlap_reads=49
JC	8005	.	1	71443	-1	1	71483	-1	0	alignment_overlap=8	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=2.624e-02	junction_possible_overlap_registers=206	key=1__71443__-1__1__71491__-1__8____251__251__0__0	max_left=91	max_left_minus=91	max_left_plus=5	max_min_left=91	max_min_left_minus=91	max_min_left_plus=5	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=414	max_right=238	max_right_minus=190	max_right_plus=238	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=2.624e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.33	side_1_overlap=8	side_1_possible_overlap_registers=214	side_1_read_count=117	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.30	side_2_overlap=0	side_2_possible_overlap_registers=206	side_2_read_count=110	side_2_redundant=0	total_non_overlap_reads=3
JC	8006	.	1	74781	-1	1	74803	1	0	alignment_overlap=16	coverage_minus=30	coverage_plus=16	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=198	key=1__74781__-1__1__74787__1__16____251__251__0__0	max_left=214	max_left_minus=214	max_left_plus=123	max_min_left=113	max_min_left_minus=105	max_min_left_plus=113	max_min_right=112	max_min_right_minus=88	max_min_right_plus=112	max_pos_hash_score=398	max_right=226	max_right_minus=226	max_right_plus=226	neg_log10_pos_hash_p_value=1.1	new_junction_coverage=0.58	new_junction_read_count=47	polymorphism_frequency=1.000e+00	pos_hash_score=34	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=16	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=198	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=46
JC	8007	.	1	75185	-1	1	76646	1	-33	alignment_overlap=-33	coverage_minus=53	coverage_plus=33	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=181	key=1__75185__-1__1__76646__1__-33__ACCGATGTTACACAAGCCGCTGACGTAATCGGT__251__251__0__0	max_left=200	max_left_minus=188	max_left_plus=200	max_min_left=94	max_min_left_minus=94	max_min_left_plus=92	max_min_right=103	max_min_right_minus=103	max_min_right_plus=100	max_pos_hash_score=364	max_right=216	max_right_minus=214	max_right_plus=216	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.15	new_junction_read_count=86	polymorphism_frequency=1.000e+00	pos_hash_score=59	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=86	unique_read_sequence=ACCGATGTTACACAAGCCGCTGACGTAATCGGT
JC	8008	.	1	77029	-1	1	77069	1	0	alignment_overlap=5	coverage_minus=58	coverage_plus=61	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=209	key=1__77029__-1__1__77064__1__5____251__251__0__0	max_left=240	max_left_minus=240	max_left_plus=238	max_min_left=120	max_min_left_minus=120	max_min_left_plus=99	max_min_right=118	max_min_right_minus=105	max_min_right_plus=118	max_pos_hash_score=420	max_right=243	max_right_minus=242	max_right_plus=243	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.39	new_junction_read_count=120	polymorphism_frequency=1.000e+00	pos_hash_score=73	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=5	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=119
JC	8009	.	1	89953	1	1	89960	-1	-10	alignment_overlap=-10	coverage_minus=43	coverage_plus=43	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=204	key=1__89953__1__1__89960__-1__-10__TGAGCGTGGC__251__251__0__1	max_left=240	max_left_minus=238	max_left_plus=240	max_min_left=115	max_min_left_minus=109	max_min_left_plus=115	max_min_right=109	max_min_right_minus=109	max_min_right_plus=108	max_pos_hash_score=410	max_right=238	max_right_minus=238	max_right_plus=235	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.03	new_junction_read_count=87	polymorphism_frequency=9.682e-01	pos_hash_score=63	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.03	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=3	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=86	unique_read_sequence=TGAGCGTGGC
JC	8010	.	1	108368	1	1	108878	1	0	alignment_overlap=15	coverage_minus=3	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.485e-02	junction_possible_overlap_registers=199	key=1__108368__1__1__108863__1__15____251__251__0__0	max_left=184	max_left_minus=184	max_left_plus=71	max_min_left=71	max_min_left_minus=42	max_min_left_plus=71	max_min_right=93	max_min_right_minus=93	max_min_right_plus=0	max_pos_hash_score=400	max_right=194	max_right_minus=194	max_right_plus=165	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=3.485e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.46	side_1_overlap=15	side_1_possible_overlap_registers=214	side_1_read_count=129	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.91	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=157	side_2_redundant=0	total_non_overlap_reads=5
JC	8011	.	1	111887	-1	1	111905	1	0	alignment_overlap=2	coverage_minus=31	coverage_plus=30	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=212	key=1__111887__-1__1__111903__1__2____251__251__0__0	max_left=241	max_left_minus=241	max_left_plus=211	max_min_left=117	max_min_left_minus=101	max_min_left_plus=117	max_min_right=120	max_min_right_minus=104	max_min_right_plus=120	max_pos_hash_score=426	max_right=238	max_right_minus=238	max_right_plus=231	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.70	new_junction_read_count=61	polymorphism_frequency=1.000e+00	pos_hash_score=47	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=2	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=212	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=61
JC	8012	.	1	140329	-1	1	351373	-1	0	alignment_overlap=40	coverage_minus=27	coverage_plus=31	flanking_left=251	flanking_right=251	frequency=6.160e-01	junction_possible_overlap_registers=174	key=1__140329__-1__1__351413__-1__40____251__251__0__0	max_left=211	max_left_minus=205	max_left_plus=211	max_min_left=105	max_min_left_minus=97	max_min_left_plus=105	max_min_right=92	max_min_right_minus=92	max_min_right_plus=44	max_pos_hash_score=350	max_right=207	max_right_minus=201	max_right_plus=207	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.84	new_junction_read_count=60	polymorphism_frequency=6.160e-01	pos_hash_score=41	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.04	side_1_overlap=40	side_1_possible_overlap_registers=214	side_1_read_count=92	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=174	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=58
JC	8013	.	1	155533	-1	1	155626	-1	0	alignment_overlap=7	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=2.687e-02	junction_possible_overlap_registers=207	key=1__155533__-1__1__155633__-1__7____251__251__0__0	max_left=141	max_left_minus=141	max_left_plus=141	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=68	max_min_right_minus=68	max_min_right_plus=68	max_pos_hash_score=416	max_right=68	max_right_minus=68	max_right_plus=68	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=2.687e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.28	side_1_overlap=7	side_1_possible_overlap_registers=214	side_1_read_count=113	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.27	side_2_overlap=0	side_2_possible_overlap_registers=207	side_2_read_count=108	side_2_redundant=0	total_non_overlap_reads=3
JC	8014	.	1	171200	1	1	171193	-1	0	alignment_overlap=14	coverage_minus=40	coverage_plus=57	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=200	key=1__171200__1__1__171207__-1__14____251__251__0__0	max_left=235	max_left_minus=212	max_left_plus=235	max_min_left=118	max_min_left_minus=118	max_min_left_plus=117	max_min_right=107	max_min_right_minus=106	max_min_right_plus=107	max_pos_hash_score=402	max_right=235	max_right_minus=235	max_right_plus=232	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.21	new_junction_read_count=100	polymorphism_frequency=1.000e+00	pos_hash_score=69	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=14	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=200	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=97
JC	8015	.	1	197270	-1	1	197460	-1	0	alignment_overlap=12	coverage_minus=0	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=3.071e-02	junction_possible_overlap_registers=202	key=1__197270__-1__1__197472__-1__12____251__251__0__0	max_left=87	max_left_minus=0	max_left_plus=87	max_min_left=87	max_min_left_minus=0	max_min_left_plus=87	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=406	max_right=155	max_right_minus=0	max_right_plus=155	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.071e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.13	side_1_overlap=12	side_1_possible_overlap_registers=214	side_1_read_count=100	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.14	side_2_overlap=0	side_2_possible_overlap_registers=202	side_2_read_count=95	side_2_redundant=0	total_non_overlap_reads=3
JC	8016	.	1	197627	-1	1	199154	1	-16	alignment_overlap=-16	coverage_minus=53	coverage_plus=53	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=198	key=1__197627__-1__1__199154__1__-16__TATTACTACTGCCGGA__251__251__0__0	max_left=233	max_left_minus=233	max_left_plus=223	max_min_left=112	max_min_left_minus=104	max_min_left_plus=112	max_min_right=115	max_min_right_minus=115	max_min_right_plus=115	max_pos_hash_score=388	max_right=233	max_right_minus=233	max_right_plus=233	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.19	new_junction_read_count=97	polymorphism_frequency=9.953e-01	pos_hash_score=74	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=5	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=209	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.01	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=1	side_2_redundant=0	total_non_overlap_reads=106	unique_read_sequence=TATTACTACTGCCGGA
JC	8017	.	1	199734	-1	1	199735	1	-4	alignment_overlap=-4	coverage_minus=67	coverage_plus=79	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=210	key=1__199734__-1__1__199735__1__-4__TTTC__251__251__0__0	max_left=240	max_left_minus=240	max_left_plus=229	max_min_left=110	max_min_left_minus=110	max_min_left_plus=108	max_min_right=103	max_min_right_minus=103	max_min_right_plus=95	max_pos_hash_score=414	max_right=231	max_right_minus=226	max_right_plus=231	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.72	new_junction_read_count=149	polymorphism_frequency=1.000e+00	pos_hash_score=93	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=4	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=210	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=146	unique_read_sequence=TTTC
JC	8018	.	1	214395	-1	1	214784	1	0	alignment_overlap=32	coverage_minus=51	coverage_plus=56	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=182	key=1__214395__-1__1__214752__1__32____251__251__0__0	max_left=215	max_left_minus=215	max_left_plus=215	max_min_left=100	max_min_left_minus=100	max_min_left_plus=100	max_min_right=107	max_min_right_minus=89	max_min_right_plus=107	max_pos_hash_score=366	max_right=214	max_right_minus=214	max_right_plus=213	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.43	new_junction_read_count=107	polymorphism_frequency=1.000e+00	pos_hash_score=67	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=32	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=182	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=107
JC	8019	.	1	230480	-1	1	411412	1	-1	alignment_overlap=-1	coverage_minus=23	coverage_plus=25	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=213	key=1__230480__-1__1__411412__1__-1__G__251__251__1__0	max_left=235	max_left_minus=228	max_left_plus=235	max_min_left=118	max_min_left_minus=111	max_min_left_plus=118	max_min_right=113	max_min_right_minus=107	max_min_right_plus=113	max_pos_hash_score=428	max_right=245	max_right_minus=245	max_right_plus=233	neg_log10_pos_hash_p_value=1.3	new_junction_coverage=0.55	new_junction_read_count=48	polymorphism_frequency=1.000e+00	pos_hash_score=34	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=48	unique_read_sequence=G
JC	8020	.	1	230481	1	1	682082	1	-1	alignment_overlap=-1	coverage_minus=77	coverage_plus=74	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=213	key=1__230481__1__1__682082__1__-1__T__251__251__0__1	max_left=247	max_left_minus=247	max_left_plus=246	max_min_left=112	max_min_left_minus=111	max_min_left_plus=112	max_min_right=125	max_min_right_minus=102	max_min_right_plus=125	max_pos_hash_score=428	max_right=245	max_right_minus=242	max_right_plus=245	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.74	new_junction_read_count=153	polymorphism_frequency=1.000e+00	pos_hash_score=92	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=151	unique_read_sequence=T
JC	8021	.	1	259221	-1	1	259592	-1	0	alignment_overlap=7	coverage_minus=2	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.784e-02	junction_possible_overlap_registers=207	key=1__259221__-1__1__259599__-1__7____251__251__0__0	max_left=179	max_left_minus=179	max_left_plus=3	max_min_left=55	max_min_left_minus=55	max_min_left_plus=3	max_min_right=64	max_min_right_minus=64	max_min_right_plus=0	max_pos_hash_score=416	max_right=242	max_right_minus=152	max_right_plus=242	neg_log10_pos_hash_p_value=6.8	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=3.784e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.24	side_1_overlap=7	side_1_possible_overlap_registers=214	side_1_read_count=109	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.15	side_2_overlap=0	side_2_possible_overlap_registers=207	side_2_read_count=98	side_2_redundant=0	total_non_overlap_reads=4
JC	8022	.	1	262128	-1	1	262129	1	-12	alignment_overlap=-12	coverage_minus=27	coverage_plus=38	flanking_left=251	flanking_right=251	frequency=NA	junction_possible_overlap_registers=202	key=1__262128__-1__1__262129__1__-12__TTCTCTTTCTCT__251__251__1__1	max_left=222	max_left_minus=209	max_left_plus=222	max_min_left=99	max_min_left_minus=82	max_min_left_plus=99	max_min_right=119	max_min_right_minus=101	max_min_right_plus=119	max_pos_hash_score=378	max_right=216	max_right_minus=216	max_right_plus=195	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=1.06	new_junction_read_count=88	polymorphism_frequency=NA	pos_hash_score=50	prediction=unknown	side_1_annotate_key=repeat	side_1_continuation=14	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=65	unique_read_sequence=TTCTCTTTCTCT
JC	8023	.	1	262129	1	1	262142	-1	-10	alignment_overlap=-10	coverage_minus=167	coverage_plus=123	flanking_left=251	flanking_right=251	frequency=NA	junction_possible_overlap_registers=204	key=1__262129__1__1__262142__-1__-10__AGAGAAAGAG__251__251__1__1	max_left=235	max_left_minus=233	max_left_plus=235	max_min_left=119	max_min_left_minus=119	max_min_left_plus=110	max_min_right=114	max_min_right_minus=114	max_min_right_plus=114	max_pos_hash_score=410	max_right=236	max_right_minus=236	max_right_plus=233	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=3.52	new_junction_read_count=296	polymorphism_frequency=NA	pos_hash_score=117	prediction=unknown	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=290	unique_read_sequence=AGAGAAAGAG
JC	8024	.	1	263951	1	1	264090	1	0	alignment_overlap=17	coverage_minus=6	coverage_plus=0	flanking_left=251	flanking_right=251	frequency=NA	junction_possible_overlap_registers=197	key=1__263951__1__1__264073__1__17____251__251__1__1	max_left=103	max_left_minus=103	max_left_plus=0	max_min_left=103	max_min_left_minus=103	max_min_left_plus=0	max_min_right=90	max_min_right_minus=90	max_min_right_plus=0	max_pos_hash_score=396	max_right=199	max_right_minus=199	max_right_plus=0	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=NA	pos_hash_score=4	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=17	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=6
JC	8025	.	1	263967	-1	1	264072	-1	0	alignment_overlap=17	coverage_minus=3	coverage_plus=9	flanking_left=251	flanking_right=251	frequency=NA	junction_possible_overlap_registers=197	key=1__263967__-1__1__264089__-1__17____251__251__1__1	max_left=138	max_left_minus=138	max_left_plus=133	max_min_left=108	max_min_left_minus=107	max_min_left_plus=108	max_min_right=111	max_min_right_minus=15	max_min_right_plus=111	max_pos_hash_score=396	max_right=217	max_right_minus=217	max_right_plus=111	neg_log10_pos_hash_p_value=4.7	new_junction_coverage=0.15	new_junction_read_count=12	polymorphism_frequency=NA	pos_hash_score=9	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=17	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=12
JC	8026	.	1	264903	-1	1	265040	-1	0	alignment_overlap=3	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=NA	junction_possible_overlap_registers=211	key=1__264903__-1__1__265043__-1__3____251__251__1__1	max_left=162	max_left_minus=85	max_left_plus=162	max_min_left=115	max_min_left_minus=85	max_min_left_plus=115	max_min_right=86	max_min_right_minus=0	max_min_right_plus=86	max_pos_hash_score=424	max_right=133	max_right_minus=86	max_right_plus=133	neg_log10_pos_hash_p_value=7.4	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=NA	pos_hash_score=3	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=3	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=3
JC	8027	.	1	274803	-1	1	274867	1	0	alignment_overlap=0	coverage_minus=24	coverage_plus=36	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=214	key=1__274803__-1__1__274867__1__0____251__251__0__0	max_left=233	max_left_minus=233	max_left_plus=230	max_min_left=120	max_min_left_minus=120	max_min_left_plus=100	max_min_right=116	max_min_right_minus=97	max_min_right_plus=116	max_pos_hash_score=430	max_right=229	max_right_minus=226	max_right_plus=229	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.68	new_junction_read_count=60	polymorphism_frequency=1.000e+00	pos_hash_score=47	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=60
JC	8028	.	1	277171	-1	1	277172	1	-3	alignment_overlap=-3	coverage_minus=33	coverage_plus=34	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=211	key=1__277171__-1__1__277172__1__-3__AAT__251__251__0__0	max_left=242	max_left_minus=242	max_left_plus=211	max_min_left=122	max_min_left_minus=108	max_min_left_plus=122	max_min_right=111	max_min_right_minus=111	max_min_right_plus=111	max_pos_hash_score=418	max_right=231	max_right_minus=231	max_right_plus=219	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.78	new_junction_read_count=68	polymorphism_frequency=1.000e+00	pos_hash_score=52	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=3	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=211	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=67	unique_read_sequence=AAT
JC	8029	.	1	279258	1	1	279423	1	0	alignment_overlap=10	coverage_minus=3	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=7.271e-02	junction_possible_overlap_registers=204	key=1__279258__1__1__279413__1__10____251__251__0__0	max_left=97	max_left_minus=97	max_left_plus=97	max_min_left=97	max_min_left_minus=97	max_min_left_plus=97	max_min_right=75	max_min_right_minus=75	max_min_right_plus=45	max_pos_hash_score=410	max_right=117	max_right_minus=117	max_right_plus=117	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=7.271e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.84	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=74	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.68	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=57	side_2_redundant=0	total_non_overlap_reads=5
JC	8030	.	1	286401	-1	1	286784	-1	-22	alignment_overlap=-22	coverage_minus=8	coverage_plus=0	flanking_left=251	flanking_right=251	frequency=3.247e-01	junction_possible_overlap_registers=192	key=1__286401__-1__1__286784__-1__-22__TAAACAACCAACTACACGAATA__251__251__0__0	max_left=227	max_left_minus=227	max_left_plus=0	max_min_left=65	max_min_left_minus=65	max_min_left_plus=0	max_min_right=3	max_min_right_minus=3	max_min_right_plus=0	max_pos_hash_score=386	max_right=163	max_right_minus=163	max_right_plus=0	neg_log10_pos_hash_p_value=4.9	new_junction_coverage=0.28	new_junction_read_count=22	polymorphism_frequency=3.247e-01	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.16	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=102	side_2_redundant=0	total_non_overlap_reads=8	unique_read_sequence=TAAACAACCAACTACACGAATA
JC	8031	.	1	292526	1	1	295567	1	0	alignment_overlap=2	coverage_minus=43	coverage_plus=41	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=212	key=1__292526__1__1__295565__1__2____251__251__0__0	max_left=235	max_left_minus=231	max_left_plus=235	max_min_left=122	max_min_left_minus=115	max_min_left_plus=122	max_min_right=121	max_min_right_minus=121	max_min_right_plus=105	max_pos_hash_score=426	max_right=237	max_right_minus=233	max_right_plus=237	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.96	new_junction_read_count=84	polymorphism_frequency=1.000e+00	pos_hash_score=58	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=2	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=212	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=84
JC	8032	.	1	292527	-1	1	295564	-1	0	alignment_overlap=2	coverage_minus=39	coverage_plus=41	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=212	key=1__292527__-1__1__295566__-1__2____251__251__0__0	max_left=237	max_left_minus=237	max_left_plus=188	max_min_left=120	max_min_left_minus=120	max_min_left_plus=119	max_min_right=116	max_min_right_minus=116	max_min_right_plus=116	max_pos_hash_score=426	max_right=248	max_right_minus=248	max_right_plus=244	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.93	new_junction_read_count=81	polymorphism_frequency=1.000e+00	pos_hash_score=54	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=2	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=212	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=80
JC	8033	.	1	293097	-1	1	293117	1	0	alignment_overlap=0	coverage_minus=40	coverage_plus=45	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=214	key=1__293097__-1__1__293117__1__0____251__251__0__0	max_left=243	max_left_minus=238	max_left_plus=243	max_min_left=122	max_min_left_minus=98	max_min_left_plus=122	max_min_right=106	max_min_right_minus=105	max_min_right_plus=106	max_pos_hash_score=430	max_right=237	max_right_minus=234	max_right_plus=237	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.96	new_junction_read_count=85	polymorphism_frequency=1.000e+00	pos_hash_score=59	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=85
JC	8034	.	1	351470	1	1	438664	1	0	alignment_overlap=1	coverage_minus=8	coverage_plus=17	flanking_left=251	flanking_right=251	frequency=3.421e-01	junction_possible_overlap_registers=213	key=1__351470__1__1__438663__1__1____251__251__0__0	max_left=246	max_left_minus=246	max_left_plus=245	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=36	max_min_right_minus=26	max_min_right_plus=36	max_pos_hash_score=428	max_right=36	max_right_minus=26	max_right_plus=36	neg_log10_pos_hash_p_value=4.5	new_junction_coverage=0.30	new_junction_read_count=26	polymorphism_frequency=3.421e-01	pos_hash_score=11	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=1	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.14	side_2_overlap=0	side_2_possible_overlap_registers=213	side_2_read_count=100	side_2_redundant=0	total_non_overlap_reads=25
JC	8035	.	1	351470	1	1	716434	1	0	alignment_overlap=1	coverage_minus=5	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.415e-01	junction_possible_overlap_registers=213	key=1__351470__1__1__716433__1__1____251__251__0__0	max_left=246	max_left_minus=246	max_left_plus=245	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=10	max_min_right_minus=10	max_min_right_plus=8	max_pos_hash_score=428	max_right=10	max_right_minus=10	max_right_plus=8	neg_log10_pos_hash_p_value=6.9	new_junction_coverage=0.08	new_junction_read_count=7	polymorphism_frequency=3.415e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=1	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.31	side_2_overlap=0	side_2_possible_overlap_registers=213	side_2_read_count=27	side_2_redundant=0	total_non_overlap_reads=7
JC	8036	.	1	351470	1	1	1104181	1	0	alignment_overlap=1	coverage_minus=5	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.889e-01	junction_possible_overlap_registers=213	key=1__351470__1__1__1104180__1__1____251__251__0__0	max_left=246	max_left_minus=246	max_left_plus=245	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=10	max_min_right_minus=10	max_min_right_plus=8	max_pos_hash_score=428	max_right=10	max_right_minus=10	max_right_plus=8	neg_log10_pos_hash_p_value=6.9	new_junction_coverage=0.08	new_junction_read_count=7	polymorphism_frequency=3.889e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=1	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.25	side_2_overlap=0	side_2_possible_overlap_registers=213	side_2_read_count=22	side_2_redundant=0	total_non_overlap_reads=7
JC	8037	.	1	351470	1	1	1271996	1	0	alignment_overlap=1	coverage_minus=5	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.182e-01	junction_possible_overlap_registers=213	key=1__351470__1__1__1271995__1__1____251__251__0__0	max_left=246	max_left_minus=246	max_left_plus=245	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=10	max_min_right_minus=10	max_min_right_plus=8	max_pos_hash_score=428	max_right=10	max_right_minus=10	max_right_plus=8	neg_log10_pos_hash_p_value=6.9	new_junction_coverage=0.08	new_junction_read_count=7	polymorphism_frequency=3.182e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=1	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.34	side_2_overlap=0	side_2_possible_overlap_registers=213	side_2_read_count=30	side_2_redundant=0	total_non_overlap_reads=7
JC	8038	.	1	351553	-1	1	1029309	1	-81	alignment_overlap=-81	coverage_minus=11	coverage_plus=14	flanking_left=251	flanking_right=251	frequency=3.789e-01	junction_possible_overlap_registers=133	key=1__351553__-1__1__1029309__1__-81__TACCCAAAATGAAAAAAATGCAGATTGAAGTGACTGAAACAACCGACTTTTCACCACAAGCCTTGAAAAAACTCAAACGAG__251__251__0__0	max_left=102	max_left_minus=99	max_left_plus=102	max_min_left=77	max_min_left_minus=71	max_min_left_plus=77	max_min_right=85	max_min_right_minus=85	max_min_right_plus=67	max_pos_hash_score=268	max_right=108	max_right_minus=108	max_right_plus=93	neg_log10_pos_hash_p_value=1.3	new_junction_coverage=0.53	new_junction_read_count=29	polymorphism_frequency=3.789e-01	pos_hash_score=20	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.71	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=63	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.02	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=90	side_2_redundant=0	total_non_overlap_reads=25	unique_read_sequence=TACCCAAAATGAAAAAAATGCAGATTGAAGTGACTGAAACAACCGACTTTTCACCACAAGCCTTGAAAAAACTCAAACGAG
JC	8039	.	1	351570	1	1	1031774	1	-59	alignment_overlap=-59	coverage_minus=10	coverage_plus=14	flanking_left=251	flanking_right=251	frequency=5.357e-01	junction_possible_overlap_registers=155	key=1__351570__1__1__1031774__1__-59__ATTTTAGGTTTAGTATAAGGTGATTTTACGCCATCAAGTCCTCTTTCACGAAAGGCTTT__251__251__0__0	max_left=81	max_left_minus=60	max_left_plus=81	max_min_left=81	max_min_left_minus=60	max_min_left_plus=81	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=312	max_right=190	max_right_minus=190	max_right_plus=167	neg_log10_pos_hash_p_value=2.0	new_junction_coverage=0.44	new_junction_read_count=28	polymorphism_frequency=5.357e-01	pos_hash_score=18	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.76	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=67	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=24	unique_read_sequence=ATTTTAGGTTTAGTATAAGGTGATTTTACGCCATCAAGTCCTCTTTCACGAAAGGCTTT
JC	8040	.	1	365709	1	1	366053	1	0	alignment_overlap=12	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=3.148e-02	junction_possible_overlap_registers=202	key=1__365709__1__1__366041__1__12____251__251__0__0	max_left=147	max_left_minus=147	max_left_plus=85	max_min_left=85	max_min_left_minus=65	max_min_left_plus=85	max_min_right=92	max_min_right_minus=92	max_min_right_plus=0	max_pos_hash_score=406	max_right=154	max_right_minus=101	max_right_plus=154	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.148e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.09	side_1_overlap=12	side_1_possible_overlap_registers=214	side_1_read_count=96	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.13	side_2_overlap=0	side_2_possible_overlap_registers=202	side_2_read_count=94	side_2_redundant=0	total_non_overlap_reads=3
JC	8041	.	1	377614	1	1	377610	-1	0	alignment_overlap=6	coverage_minus=56	coverage_plus=36	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=208	key=1__377614__1__1__377616__-1__6____251__251__0__0	max_left=239	max_left_minus=239	max_left_plus=235	max_min_left=120	max_min_left_minus=120	max_min_left_plus=117	max_min_right=122	max_min_right_minus=122	max_min_right_plus=98	max_pos_hash_score=418	max_right=240	max_right_minus=240	max_right_plus=230	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=1.08	new_junction_read_count=93	polymorphism_frequency=9.895e-01	pos_hash_score=57	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.01	side_1_overlap=6	side_1_possible_overlap_registers=214	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.01	side_2_overlap=0	side_2_possible_overlap_registers=208	side_2_read_count=1	side_2_redundant=0	total_non_overlap_reads=92
JC	8042	.	1	387958	-1	1	388352	1	0	alignment_overlap=2	coverage_minus=68	coverage_plus=51	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=212	key=1__387958__-1__1__388350__1__2____251__251__0__0	max_left=247	max_left_minus=244	max_left_plus=247	max_min_left=123	max_min_left_minus=123	max_min_left_plus=110	max_min_right=112	max_min_right_minus=112	max_min_right_plus=90	max_pos_hash_score=426	max_right=248	max_right_minus=243	max_right_plus=248	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.37	new_junction_read_count=120	polymorphism_frequency=1.000e+00	pos_hash_score=78	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=2	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=212	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=119
JC	8043	.	1	396266	1	1	396822	1	0	alignment_overlap=13	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=2.927e-02	junction_possible_overlap_registers=201	key=1__396266__1__1__396809__1__13____251__251__0__0	max_left=81	max_left_minus=81	max_left_plus=43	max_min_left=81	max_min_left_minus=81	max_min_left_plus=43	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=404	max_right=178	max_right_minus=157	max_right_plus=178	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=2.927e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.93	side_1_overlap=13	side_1_possible_overlap_registers=214	side_1_read_count=82	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.47	side_2_overlap=0	side_2_possible_overlap_registers=201	side_2_read_count=122	side_2_redundant=0	total_non_overlap_reads=3
JC	8044	.	1	407489	-1	1	408819	1	0	alignment_overlap=2	coverage_minus=68	coverage_plus=79	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=212	key=1__407489__-1__1__408817__1__2____251__251__0__0	max_left=246	max_left_minus=239	max_left_plus=246	max_min_left=121	max_min_left_minus=121	max_min_left_plus=96	max_min_right=122	max_min_right_minus=122	max_min_right_plus=118	max_pos_hash_score=426	max_right=244	max_right_minus=244	max_right_plus=240	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.69	new_junction_read_count=148	polymorphism_frequency=1.000e+00	pos_hash_score=89	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=2	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=212	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=147
JC	8045	.	1	411412	1	1	691581	1	-1	alignment_overlap=-1	coverage_minus=3	coverage_plus=6	flanking_left=251	flanking_right=251	frequency=1.434e-01	junction_possible_overlap_registers=213	key=1__411412__1__1__691581__1__-1__C__251__251__1__0	max_left=233	max_left_minus=233	max_left_plus=233	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=29	max_min_right_minus=29	max_min_right_plus=29	max_pos_hash_score=428	max_right=29	max_right_minus=29	max_right_plus=29	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.10	new_junction_read_count=9	polymorphism_frequency=1.434e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.61	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=54	side_2_redundant=0	total_non_overlap_reads=9	unique_read_sequence=C
JC	8046	.	1	423258	-1	1	423312	1	-89	alignment_overlap=-89	coverage_minus=40	coverage_plus=27	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=125	key=1__423258__-1__1__423312__1__-89__CAGCAGCAAATTCGGGCGTTGCCACACGATGAGCGCCAGCACCAGACGCGCTTTTTCGCCGCCGGAAAAAGAAGCAACCGGTTGATTCA__251__251__0__0	max_left=151	max_left_minus=150	max_left_plus=151	max_min_left=80	max_min_left_minus=80	max_min_left_plus=62	max_min_right=79	max_min_right_minus=79	max_min_right_plus=77	max_pos_hash_score=236	max_right=152	max_right_minus=142	max_right_plus=152	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.34	new_junction_read_count=69	polymorphism_frequency=1.000e+00	pos_hash_score=54	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=8	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=206	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=67	unique_read_sequence=CAGCAGCAAATTCGGGCGTTGCCACACGATGAGCGCCAGCACCAGACGCGCTTTTTCGCCGCCGGAAAAAGAAGCAACCGGTTGATTCA
JC	8047	.	1	426828	-1	1	428438	1	0	alignment_overlap=5	coverage_minus=60	coverage_plus=67	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=209	key=1__426828__-1__1__428433__1__5____251__251__0__0	max_left=241	max_left_minus=232	max_left_plus=241	max_min_left=113	max_min_left_minus=91	max_min_left_plus=113	max_min_right=119	max_min_right_minus=119	max_min_right_plus=110	max_pos_hash_score=420	max_right=243	max_right_minus=227	max_right_plus=243	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.47	new_junction_read_count=127	polymorphism_frequency=1.000e+00	pos_hash_score=80	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=5	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=127
JC	8048	.	1	429392	-1	1	438477	1	0	alignment_overlap=2	coverage_minus=18	coverage_plus=53	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=212	key=1__429392__-1__1__438475__1__2____251__251__0__0	max_left=236	max_left_minus=236	max_left_plus=227	max_min_left=111	max_min_left_minus=100	max_min_left_plus=111	max_min_right=122	max_min_right_minus=122	max_min_right_plus=120	max_pos_hash_score=426	max_right=244	max_right_minus=196	max_right_plus=244	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.88	new_junction_read_count=77	polymorphism_frequency=1.000e+00	pos_hash_score=49	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=2	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=212	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=71
JC	8049	.	1	487955	-1	1	488220	-1	0	alignment_overlap=8	coverage_minus=1	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=2.646e-02	junction_possible_overlap_registers=206	key=1__487955__-1__1__488228__-1__8____251__251__0__0	max_left=196	max_left_minus=196	max_left_plus=195	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=82	max_min_right_minus=46	max_min_right_plus=82	max_pos_hash_score=414	max_right=82	max_right_minus=46	max_right_plus=82	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=2.646e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.72	side_1_overlap=8	side_1_possible_overlap_registers=214	side_1_read_count=152	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.74	side_2_overlap=0	side_2_possible_overlap_registers=206	side_2_read_count=148	side_2_redundant=0	total_non_overlap_reads=4
JC	8050	.	1	497805	1	1	593468	-1	-5	alignment_overlap=-5	coverage_minus=10	coverage_plus=13	flanking_left=251	flanking_right=251	frequency=6.058e-01	junction_possible_overlap_registers=203	key=1__497805__1__1__593468__-1__-5__TGTCC__251__251__1__0	max_left=234	max_left_minus=212	max_left_plus=234	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=120	max_min_right_minus=102	max_min_right_plus=120	max_pos_hash_score=408	max_right=120	max_right_minus=102	max_right_plus=120	neg_log10_pos_hash_p_value=3.4	new_junction_coverage=0.29	new_junction_read_count=24	polymorphism_frequency=6.058e-01	pos_hash_score=15	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=6	side_2_coverage=0.19	side_2_overlap=0	side_2_possible_overlap_registers=208	side_2_read_count=16	side_2_redundant=0	total_non_overlap_reads=23	unique_read_sequence=TGTCC
JC	8051	.	1	497805	1	1	706003	-1	-5	alignment_overlap=-5	coverage_minus=3	coverage_plus=7	flanking_left=251	flanking_right=251	frequency=1.208e-01	junction_possible_overlap_registers=203	key=1__497805__1__1__706003__-1__-5__TGTCC__251__251__1__0	max_left=234	max_left_minus=197	max_left_plus=234	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=26	max_min_right_minus=25	max_min_right_plus=26	max_pos_hash_score=408	max_right=26	max_right_minus=25	max_right_plus=26	neg_log10_pos_hash_p_value=5.8	new_junction_coverage=0.13	new_junction_read_count=11	polymorphism_frequency=1.208e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=6	side_2_coverage=0.96	side_2_overlap=0	side_2_possible_overlap_registers=208	side_2_read_count=82	side_2_redundant=0	total_non_overlap_reads=10	unique_read_sequence=TGTCC
JC	8052	.	1	508611	-1	1	508616	1	0	alignment_overlap=0	coverage_minus=74	coverage_plus=91	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=214	key=1__508611__-1__1__508616__1__0____251__251__0__0	max_left=250	max_left_minus=250	max_left_plus=247	max_min_left=125	max_min_left_minus=125	max_min_left_plus=119	max_min_right=122	max_min_right_minus=122	max_min_right_plus=122	max_pos_hash_score=430	max_right=249	max_right_minus=249	max_right_plus=240	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.88	new_junction_read_count=166	polymorphism_frequency=1.000e+00	pos_hash_score=86	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=165
JC	8053	.	1	519634	1	1	1029309	1	-92	alignment_overlap=-92	coverage_minus=4	coverage_plus=5	flanking_left=251	flanking_right=251	frequency=1.442e-01	junction_possible_overlap_registers=122	key=1__519634__1__1__1029309__1__-92__TAAACCTAAAATACCCAAAATGAAAAAAATGCAGATTGAAGTGACTGAAACAACCGACTTTTCACCACAAGCCTTGAAAAAACTCAAACGAG__251__251__0__0	max_left=127	max_left_minus=127	max_left_plus=126	max_min_left=19	max_min_left_minus=19	max_min_left_plus=0	max_min_right=56	max_min_right_minus=56	max_min_right_plus=43	max_pos_hash_score=246	max_right=56	max_right_minus=56	max_right_plus=43	neg_log10_pos_hash_p_value=3.2	new_junction_coverage=0.22	new_junction_read_count=11	polymorphism_frequency=1.442e-01	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.58	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=139	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.02	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=90	side_2_redundant=0	total_non_overlap_reads=9	unique_read_sequence=TAAACCTAAAATACCCAAAATGAAAAAAATGCAGATTGAAGTGACTGAAACAACCGACTTTTCACCACAAGCCTTGAAAAAACTCAAACGAG
JC	8054	.	1	545599	-1	1	545600	1	-5	alignment_overlap=-5	coverage_minus=59	coverage_plus=43	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=209	key=1__545599__-1__1__545600__1__-5__ATTTT__251__251__0__0	max_left=242	max_left_minus=230	max_left_plus=242	max_min_left=116	max_min_left_minus=112	max_min_left_plus=116	max_min_right=122	max_min_right_minus=113	max_min_right_plus=122	max_pos_hash_score=404	max_right=245	max_right_minus=245	max_right_plus=221	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.23	new_junction_read_count=106	polymorphism_frequency=1.000e+00	pos_hash_score=68	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=8	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=206	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=102	unique_read_sequence=ATTTT
JC	8055	.	1	551492	1	1	551620	1	0	alignment_overlap=5	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=2.139e-02	junction_possible_overlap_registers=209	key=1__551492__1__1__551615__1__5____251__251__0__0	max_left=117	max_left_minus=117	max_left_plus=73	max_min_left=117	max_min_left_minus=117	max_min_left_plus=73	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=420	max_right=173	max_right_minus=129	max_right_plus=173	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.139e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.70	side_1_overlap=5	side_1_possible_overlap_registers=214	side_1_read_count=150	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.49	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=128	side_2_redundant=0	total_non_overlap_reads=3
JC	8056	.	1	585753	-1	1	586540	-1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=3.328e-02	junction_possible_overlap_registers=204	key=1__585753__-1__1__586550__-1__10____251__251__0__0	max_left=138	max_left_minus=138	max_left_plus=70	max_min_left=70	max_min_left_minus=70	max_min_left_plus=70	max_min_right=103	max_min_right_minus=103	max_min_right_plus=0	max_pos_hash_score=410	max_right=146	max_right_minus=146	max_right_plus=142	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.328e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.91	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=80	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.17	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=98	side_2_redundant=0	total_non_overlap_reads=3
JC	8057	.	1	593468	-1	1	706004	1	-6	alignment_overlap=-6	coverage_minus=30	coverage_plus=21	flanking_left=251	flanking_right=251	frequency=4.893e-01	junction_possible_overlap_registers=208	key=1__593468__-1__1__706004__1__-6__GGACAC__251__251__0__0	max_left=241	max_left_minus=241	max_left_plus=233	max_min_left=77	max_min_left_minus=75	max_min_left_plus=77	max_min_right=108	max_min_right_minus=87	max_min_right_plus=108	max_pos_hash_score=406	max_right=112	max_right_minus=112	max_right_plus=108	neg_log10_pos_hash_p_value=1.2	new_junction_coverage=0.63	new_junction_read_count=54	polymorphism_frequency=4.893e-01	pos_hash_score=33	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=6	side_1_coverage=0.38	side_1_overlap=0	side_1_possible_overlap_registers=208	side_1_read_count=33	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.93	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=82	side_2_redundant=0	total_non_overlap_reads=51	unique_read_sequence=GGACAC
JC	8058	.	1	593469	1	1	716537	1	0	alignment_overlap=0	coverage_minus=3	coverage_plus=8	flanking_left=251	flanking_right=251	frequency=1.379e-01	junction_possible_overlap_registers=214	key=1__593469__1__1__716537__1__0____251__251__1__0	max_left=233	max_left_minus=196	max_left_plus=233	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=32	max_min_right_minus=31	max_min_right_plus=32	max_pos_hash_score=430	max_right=32	max_right_minus=31	max_right_plus=32	neg_log10_pos_hash_p_value=5.7	new_junction_coverage=0.14	new_junction_read_count=12	polymorphism_frequency=1.379e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.85	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=75	side_2_redundant=0	total_non_overlap_reads=11
JC	8059	.	1	593469	1	1	1104284	1	0	alignment_overlap=0	coverage_minus=3	coverage_plus=8	flanking_left=251	flanking_right=251	frequency=1.765e-01	junction_possible_overlap_registers=214	key=1__593469__1__1__1104284__1__0____251__251__1__0	max_left=233	max_left_minus=196	max_left_plus=233	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=32	max_min_right_minus=31	max_min_right_plus=32	max_pos_hash_score=430	max_right=32	max_right_minus=31	max_right_plus=32	neg_log10_pos_hash_p_value=5.7	new_junction_coverage=0.14	new_junction_read_count=12	polymorphism_frequency=1.765e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.63	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=56	side_2_redundant=0	total_non_overlap_reads=11
JC	8060	.	1	612818	1	1	612934	1	0	alignment_overlap=7	coverage_minus=3	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=3.968e-02	junction_possible_overlap_registers=207	key=1__612818__1__1__612927__1__7____251__251__0__0	max_left=103	max_left_minus=103	max_left_plus=77	max_min_left=103	max_min_left_minus=103	max_min_left_plus=77	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=416	max_right=166	max_right_minus=155	max_right_plus=166	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=3.968e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.18	side_1_overlap=7	side_1_possible_overlap_registers=214	side_1_read_count=104	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.09	side_2_overlap=0	side_2_possible_overlap_registers=207	side_2_read_count=93	side_2_redundant=0	total_non_overlap_reads=4
JC	8061	.	1	617648	1	1	617644	-1	0	alignment_overlap=4	coverage_minus=48	coverage_plus=31	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=210	key=1__617648__1__1__617648__-1__4____251__251__0__0	max_left=245	max_left_minus=232	max_left_plus=245	max_min_left=123	max_min_left_minus=123	max_min_left_plus=122	max_min_right=122	max_min_right_minus=122	max_min_right_plus=119	max_pos_hash_score=422	max_right=245	max_right_minus=245	max_right_plus=243	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.95	new_junction_read_count=82	polymorphism_frequency=1.000e+00	pos_hash_score=55	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=4	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=210	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=79
JC	8062	.	1	642882	-1	1	643368	-1	0	alignment_overlap=5	coverage_minus=2	coverage_plus=7	flanking_left=251	flanking_right=251	frequency=7.278e-02	junction_possible_overlap_registers=209	key=1__642882__-1__1__643373__-1__5____251__251__0__0	max_left=206	max_left_minus=206	max_left_plus=171	max_min_left=57	max_min_left_minus=0	max_min_left_plus=57	max_min_right=100	max_min_right_minus=72	max_min_right_plus=100	max_pos_hash_score=420	max_right=100	max_right_minus=72	max_right_plus=100	neg_log10_pos_hash_p_value=6.8	new_junction_coverage=0.10	new_junction_read_count=9	polymorphism_frequency=7.278e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.30	side_1_overlap=5	side_1_possible_overlap_registers=214	side_1_read_count=115	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.36	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=117	side_2_redundant=0	total_non_overlap_reads=9
JC	8063	.	1	663292	1	1	663669	1	0	alignment_overlap=4	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=2.443e-02	junction_possible_overlap_registers=210	key=1__663292__1__1__663665__1__4____251__251__0__0	max_left=228	max_left_minus=194	max_left_plus=228	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=88	max_min_right_minus=88	max_min_right_plus=19	max_pos_hash_score=422	max_right=88	max_right_minus=88	max_right_plus=19	neg_log10_pos_hash_p_value=7.4	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.443e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.46	side_1_overlap=4	side_1_possible_overlap_registers=214	side_1_read_count=129	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.31	side_2_overlap=0	side_2_possible_overlap_registers=210	side_2_read_count=113	side_2_redundant=0	total_non_overlap_reads=3
JC	8064	.	1	682049	1	1	1040560	-1	-36	alignment_overlap=-36	coverage_minus=4	coverage_plus=5	flanking_left=251	flanking_right=251	frequency=3.294e-01	junction_possible_overlap_registers=178	key=1__682049__1__1__1040560__-1__-36__GCCCCGATGCTCTCACATCAGGGCTCCCTATCAGGC__251__251__0__0	max_left=30	max_left_minus=29	max_left_plus=30	max_min_left=29	max_min_left_minus=29	max_min_left_plus=22	max_min_right=29	max_min_right_minus=0	max_min_right_plus=29	max_pos_hash_score=358	max_right=202	max_right_minus=196	max_right_plus=202	neg_log10_pos_hash_p_value=5.0	new_junction_coverage=0.26	new_junction_read_count=19	polymorphism_frequency=3.294e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.19	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=17	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.86	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=76	side_2_redundant=0	total_non_overlap_reads=9	unique_read_sequence=GCCCCGATGCTCTCACATCAGGGCTCCCTATCAGGC
JC	8065	.	1	682081	-1	1	682082	1	-3	alignment_overlap=-3	coverage_minus=59	coverage_plus=54	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=211	key=1__682081__-1__1__682082__1__-3__AAC__251__251__0__1	max_left=244	max_left_minus=244	max_left_plus=236	max_min_left=120	max_min_left_minus=111	max_min_left_plus=120	max_min_right=113	max_min_right_minus=72	max_min_right_plus=113	max_pos_hash_score=420	max_right=247	max_right_minus=247	max_right_plus=247	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.29	new_junction_read_count=112	polymorphism_frequency=1.000e+00	pos_hash_score=65	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=2	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=212	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=113	unique_read_sequence=AAC
JC	8066	.	1	682318	-1	1	1137527	1	-98	alignment_overlap=-98	coverage_minus=26	coverage_plus=33	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=116	key=1__682318__-1__1__1137527__1__-98__AGGAATCAGGAAAAGGAAGACATGATTCAGGATAATTTATCGAAGAAAGGATATGTGGACCCCTTTAAGGGGTAGGTCATAGAGTTATTTCACGGTTG__251__251__1__0	max_left=148	max_left_minus=148	max_left_plus=141	max_min_left=74	max_min_left_minus=74	max_min_left_plus=73	max_min_right=69	max_min_right_minus=69	max_min_right_plus=65	max_pos_hash_score=234	max_right=147	max_right_minus=147	max_right_plus=141	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.23	new_junction_read_count=59	polymorphism_frequency=9.082e-01	pos_hash_score=42	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.12	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=11	side_2_redundant=0	total_non_overlap_reads=59	unique_read_sequence=AGGAATCAGGAAAAGGAAGACATGATTCAGGATAATTTATCGAAGAAAGGATATGTGGACCCCTTTAAGGGGTAGGTCATAGAGTTATTTCACGGTTG
JC	8067	.	1	695224	-1	1	695546	-1	0	alignment_overlap=9	coverage_minus=2	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=5.165e-02	junction_possible_overlap_registers=205	key=1__695224__-1__1__695555__-1__9____251__251__0__0	max_left=129	max_left_minus=129	max_left_plus=122	max_min_left=38	max_min_left_minus=38	max_min_left_plus=0	max_min_right=120	max_min_right_minus=113	max_min_right_plus=120	max_pos_hash_score=412	max_right=120	max_right_minus=120	max_right_plus=120	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=5.165e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.84	side_1_overlap=9	side_1_possible_overlap_registers=214	side_1_read_count=74	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.90	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=76	side_2_redundant=0	total_non_overlap_reads=4
JC	8068	.	1	706004	1	1	716537	1	0	alignment_overlap=0	coverage_minus=2	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=4.908e-02	junction_possible_overlap_registers=214	key=1__706004__1__1__716537__1__0____251__251__0__0	max_left=198	max_left_minus=198	max_left_plus=183	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=113	max_min_right_minus=59	max_min_right_plus=113	max_pos_hash_score=430	max_right=113	max_right_minus=59	max_right_plus=113	neg_log10_pos_hash_p_value=7.4	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=4.908e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.91	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=80	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.85	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=75	side_2_redundant=0	total_non_overlap_reads=4
JC	8069	.	1	718697	-1	1	719014	-1	0	alignment_overlap=9	coverage_minus=2	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.492e-02	junction_possible_overlap_registers=205	key=1__718697__-1__1__719023__-1__9____251__251__0__0	max_left=136	max_left_minus=136	max_left_plus=130	max_min_left=79	max_min_left_minus=58	max_min_left_plus=79	max_min_right=111	max_min_right_minus=106	max_min_right_plus=111	max_pos_hash_score=412	max_right=183	max_right_minus=183	max_right_plus=163	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=3.492e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.32	side_1_overlap=9	side_1_possible_overlap_registers=214	side_1_read_count=116	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.30	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=110	side_2_redundant=0	total_non_overlap_reads=4
JC	8070	.	1	734322	1	1	734665	1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=6.051e-02	junction_possible_overlap_registers=204	key=1__734322__1__1__734655__1__10____251__251__0__0	max_left=195	max_left_minus=195	max_left_plus=169	max_min_left=32	max_min_left_minus=0	max_min_left_plus=32	max_min_right=72	max_min_right_minus=64	max_min_right_plus=72	max_pos_hash_score=410	max_right=213	max_right_minus=64	max_right_plus=213	neg_log10_pos_hash_p_value=6.3	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=6.051e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.90	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=79	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.32	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=111	side_2_redundant=0	total_non_overlap_reads=5
JC	8071	.	1	755793	-1	1	755876	-1	0	alignment_overlap=8	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.992e-02	junction_possible_overlap_registers=206	key=1__755793__-1__1__755884__-1__8____251__251__0__0	max_left=166	max_left_minus=109	max_left_plus=166	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=77	max_min_right_minus=24	max_min_right_plus=77	max_pos_hash_score=414	max_right=77	max_right_minus=24	max_right_plus=77	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.992e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.82	side_1_overlap=8	side_1_possible_overlap_registers=214	side_1_read_count=72	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.88	side_2_overlap=0	side_2_possible_overlap_registers=206	side_2_read_count=75	side_2_redundant=0	total_non_overlap_reads=3
JC	8072	.	1	806105	1	1	806683	1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=5.817e-02	junction_possible_overlap_registers=204	key=1__806105__1__1__806673__1__10____251__251__0__0	max_left=130	max_left_minus=130	max_left_plus=105	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=111	max_min_right_minus=111	max_min_right_plus=104	max_pos_hash_score=410	max_right=111	max_right_minus=111	max_right_plus=104	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=5.817e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.60	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=53	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.94	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=79	side_2_redundant=0	total_non_overlap_reads=4
JC	8073	.	1	813938	-1	1	813949	1	0	alignment_overlap=0	coverage_minus=55	coverage_plus=36	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=214	key=1__813938__-1__1__813949__1__0____251__251__0__0	max_left=248	max_left_minus=239	max_left_plus=248	max_min_left=122	max_min_left_minus=122	max_min_left_plus=120	max_min_right=125	max_min_right_minus=125	max_min_right_plus=101	max_pos_hash_score=430	max_right=246	max_right_minus=245	max_right_plus=246	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=1.03	new_junction_read_count=91	polymorphism_frequency=1.000e+00	pos_hash_score=58	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=91
JC	8074	.	1	817378	-1	1	817944	-1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=4.217e-02	junction_possible_overlap_registers=204	key=1__817378__-1__1__817954__-1__10____251__251__0__0	max_left=198	max_left_minus=198	max_left_plus=140	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=77	max_min_right_minus=77	max_min_right_plus=77	max_pos_hash_score=410	max_right=77	max_right_minus=77	max_right_plus=77	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=4.217e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.15	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=101	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.48	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=40	side_2_redundant=0	total_non_overlap_reads=3
JC	8075	.	1	860352	-1	1	860353	1	-3	alignment_overlap=-3	coverage_minus=16	coverage_plus=33	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=211	key=1__860352__-1__1__860353__1__-3__TTA__251__251__0__0	max_left=239	max_left_minus=235	max_left_plus=239	max_min_left=102	max_min_left_minus=93	max_min_left_plus=102	max_min_right=119	max_min_right_minus=113	max_min_right_plus=119	max_pos_hash_score=408	max_right=233	max_right_minus=158	max_right_plus=233	neg_log10_pos_hash_p_value=0.8	new_junction_coverage=0.64	new_junction_read_count=56	polymorphism_frequency=9.824e-01	pos_hash_score=41	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=8	side_1_coverage=0.01	side_1_overlap=0	side_1_possible_overlap_registers=206	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.01	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=1	side_2_redundant=0	total_non_overlap_reads=49	unique_read_sequence=TTA
JC	8076	.	1	862771	-1	1	862789	1	-7	alignment_overlap=-7	coverage_minus=26	coverage_plus=14	flanking_left=251	flanking_right=251	frequency=7.598e-01	junction_possible_overlap_registers=207	key=1__862771__-1__1__862789__1__-7__TAAAAGC__251__251__0__0	max_left=238	max_left_minus=238	max_left_plus=237	max_min_left=33	max_min_left_minus=0	max_min_left_plus=33	max_min_right=101	max_min_right_minus=81	max_min_right_plus=101	max_pos_hash_score=414	max_right=147	max_right_minus=81	max_right_plus=147	neg_log10_pos_hash_p_value=1.4	new_junction_coverage=0.54	new_junction_read_count=46	polymorphism_frequency=7.598e-01	pos_hash_score=31	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=1	side_1_coverage=0.17	side_1_overlap=0	side_1_possible_overlap_registers=213	side_1_read_count=15	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.17	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=15	side_2_redundant=0	total_non_overlap_reads=40	unique_read_sequence=TAAAAGC
JC	8077	.	1	875676	-1	1	875810	-1	0	alignment_overlap=6	coverage_minus=1	coverage_plus=4	flanking_left=251	flanking_right=251	frequency=4.390e-02	junction_possible_overlap_registers=208	key=1__875676__-1__1__875816__-1__6____251__251__0__0	max_left=197	max_left_minus=74	max_left_plus=197	max_min_left=109	max_min_left_minus=74	max_min_left_plus=109	max_min_right=57	max_min_right_minus=0	max_min_right_plus=57	max_pos_hash_score=418	max_right=136	max_right_minus=136	max_right_plus=136	neg_log10_pos_hash_p_value=6.3	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=4.390e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.30	side_1_overlap=6	side_1_possible_overlap_registers=214	side_1_read_count=115	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.24	side_2_overlap=0	side_2_possible_overlap_registers=208	side_2_read_count=106	side_2_redundant=0	total_non_overlap_reads=5
JC	8078	.	1	892671	-1	1	892672	1	-9	alignment_overlap=-9	coverage_minus=41	coverage_plus=64	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=205	key=1__892671__-1__1__892672__1__-9__GAGAACAAA__251__251__0__0	max_left=235	max_left_minus=235	max_left_plus=235	max_min_left=119	max_min_left_minus=111	max_min_left_plus=119	max_min_right=121	max_min_right_minus=96	max_min_right_plus=121	max_pos_hash_score=394	max_right=234	max_right_minus=205	max_right_plus=234	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.23	new_junction_read_count=104	polymorphism_frequency=1.000e+00	pos_hash_score=68	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=9	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=205	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=105	unique_read_sequence=GAGAACAAA
JC	8079	.	1	898976	1	1	899326	1	0	alignment_overlap=11	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.567e-02	junction_possible_overlap_registers=203	key=1__898976__1__1__899315__1__11____251__251__0__0	max_left=204	max_left_minus=204	max_left_plus=179	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=111	max_min_right_minus=36	max_min_right_plus=111	max_pos_hash_score=408	max_right=111	max_right_minus=36	max_right_plus=111	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.567e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.05	side_1_overlap=11	side_1_possible_overlap_registers=214	side_1_read_count=93	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.88	side_2_overlap=0	side_2_possible_overlap_registers=203	side_2_read_count=74	side_2_redundant=0	total_non_overlap_reads=3
JC	8080	.	1	906433	-1	1	906506	-1	0	alignment_overlap=9	coverage_minus=2	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=6.173e-02	junction_possible_overlap_registers=205	key=1__906433__-1__1__906515__-1__9____251__251__0__0	max_left=176	max_left_minus=176	max_left_plus=169	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=73	max_min_right_minus=73	max_min_right_plus=73	max_pos_hash_score=412	max_right=73	max_right_minus=73	max_right_plus=73	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=6.173e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.08	side_1_overlap=9	side_1_possible_overlap_registers=214	side_1_read_count=95	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.72	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=61	side_2_redundant=0	total_non_overlap_reads=5
JC	8081	.	1	933433	-1	1	935299	1	0	alignment_overlap=3	coverage_minus=57	coverage_plus=45	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=211	key=1__933433__-1__1__935296__1__3____251__251__0__0	max_left=226	max_left_minus=226	max_left_plus=226	max_min_left=123	max_min_left_minus=123	max_min_left_plus=116	max_min_right=121	max_min_right_minus=117	max_min_right_plus=121	max_pos_hash_score=424	max_right=246	max_right_minus=231	max_right_plus=246	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.17	new_junction_read_count=102	polymorphism_frequency=1.000e+00	pos_hash_score=65	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=3	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=211	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=102
JC	8082	.	1	970763	-1	1	970764	1	-9	alignment_overlap=-9	coverage_minus=43	coverage_plus=56	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=205	key=1__970763__-1__1__970764__1__-9__TACTTCGTG__251__251__0__0	max_left=236	max_left_minus=232	max_left_plus=236	max_min_left=110	max_min_left_minus=105	max_min_left_plus=110	max_min_right=118	max_min_right_minus=109	max_min_right_plus=118	max_pos_hash_score=396	max_right=238	max_right_minus=238	max_right_plus=234	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.16	new_junction_read_count=98	polymorphism_frequency=1.000e+00	pos_hash_score=59	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=8	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=206	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=99	unique_read_sequence=TACTTCGTG
JC	8083	.	1	998621	-1	1	1002088	1	0	alignment_overlap=2	coverage_minus=31	coverage_plus=55	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=212	key=1__998621__-1__1__1002086__1__2____251__251__0__0	max_left=246	max_left_minus=243	max_left_plus=246	max_min_left=115	max_min_left_minus=115	max_min_left_plus=91	max_min_right=112	max_min_right_minus=98	max_min_right_plus=112	max_pos_hash_score=426	max_right=246	max_right_minus=246	max_right_plus=242	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=1.00	new_junction_read_count=87	polymorphism_frequency=1.000e+00	pos_hash_score=56	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=2	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=212	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=86
JC	8084	.	1	1010170	-1	1	1010548	1	0	alignment_overlap=2	coverage_minus=37	coverage_plus=30	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=212	key=1__1010170__-1__1__1010546__1__2____251__251__0__0	max_left=244	max_left_minus=203	max_left_plus=244	max_min_left=124	max_min_left_minus=119	max_min_left_plus=124	max_min_right=124	max_min_right_minus=124	max_min_right_plus=116	max_pos_hash_score=426	max_right=247	max_right_minus=247	max_right_plus=241	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.77	new_junction_read_count=67	polymorphism_frequency=1.000e+00	pos_hash_score=55	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=2	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=212	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=67
JC	8085	.	1	1031009	-1	1	1031010	1	-8	alignment_overlap=-8	coverage_minus=55	coverage_plus=43	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=206	key=1__1031009__-1__1__1031010__1__-8__TTGATGAA__251__251__0__0	max_left=240	max_left_minus=240	max_left_plus=237	max_min_left=118	max_min_left_minus=116	max_min_left_plus=118	max_min_right=121	max_min_right_minus=121	max_min_right_plus=80	max_pos_hash_score=394	max_right=240	max_right_minus=240	max_right_plus=194	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.14	new_junction_read_count=97	polymorphism_frequency=1.000e+00	pos_hash_score=62	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=10	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=204	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=98	unique_read_sequence=TTGATGAA
JC	8086	.	1	1128226	-1	1	1128451	-1	0	alignment_overlap=9	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=3.815e-02	junction_possible_overlap_registers=205	key=1__1128226__-1__1__1128460__-1__9____251__251__0__0	max_left=172	max_left_minus=172	max_left_plus=115	max_min_left=115	max_min_left_minus=41	max_min_left_plus=115	max_min_right=70	max_min_right_minus=70	max_min_right_plus=0	max_pos_hash_score=412	max_right=200	max_right_minus=200	max_right_plus=127	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.815e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.01	side_1_overlap=9	side_1_possible_overlap_registers=214	side_1_read_count=89	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.78	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=66	side_2_redundant=0	total_non_overlap_reads=3
JC	8087	.	1	1137513	-1	1	1715996	-1	-1	alignment_overlap=-1	coverage_minus=6	coverage_plus=8	flanking_left=251	flanking_right=251	frequency=1.779e-01	junction_possible_overlap_registers=213	key=1__1137513__-1__1__1715996__-1__-1__C__251__251__1__0	max_left=233	max_left_minus=233	max_left_plus=233	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=47	max_min_right_minus=47	max_min_right_plus=37	max_pos_hash_score=428	max_right=47	max_right_minus=47	max_right_plus=37	neg_log10_pos_hash_p_value=4.7	new_junction_coverage=0.16	new_junction_read_count=14	polymorphism_frequency=1.779e-01	pos_hash_score=10	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.74	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=65	side_2_redundant=0	total_non_overlap_reads=14	unique_read_sequence=C
JC	8088	.	1	1140757	-1	1	1140803	1	0	alignment_overlap=7	coverage_minus=28	coverage_plus=27	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=207	key=1__1140757__-1__1__1140796__1__7____251__251__0__0	max_left=234	max_left_minus=234	max_left_plus=228	max_min_left=116	max_min_left_minus=116	max_min_left_plus=90	max_min_right=121	max_min_right_minus=89	max_min_right_plus=121	max_pos_hash_score=416	max_right=239	max_right_minus=226	max_right_plus=239	neg_log10_pos_hash_p_value=1.1	new_junction_coverage=0.64	new_junction_read_count=55	polymorphism_frequency=1.000e+00	pos_hash_score=36	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=7	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=207	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=55
JC	8089	.	1	1155771	-1	1	1155775	1	0	alignment_overlap=2	coverage_minus=24	coverage_plus=22	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=212	key=1__1155771__-1__1__1155773__1__2____251__251__0__0	max_left=242	max_left_minus=242	max_left_plus=201	max_min_left=120	max_min_left_minus=119	max_min_left_plus=120	max_min_right=124	max_min_right_minus=124	max_min_right_plus=104	max_pos_hash_score=426	max_right=247	max_right_minus=247	max_right_plus=244	neg_log10_pos_hash_p_value=0.8	new_junction_coverage=0.53	new_junction_read_count=46	polymorphism_frequency=1.000e+00	pos_hash_score=41	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=2	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=212	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=46
JC	8090	.	1	1186377	1	1	1186905	1	0	alignment_overlap=10	coverage_minus=5	coverage_plus=0	flanking_left=251	flanking_right=251	frequency=6.587e-02	junction_possible_overlap_registers=204	key=1__1186377__1__1__1186895__1__10____251__251__0__0	max_left=135	max_left_minus=135	max_left_plus=0	max_min_left=73	max_min_left_minus=73	max_min_left_plus=0	max_min_right=106	max_min_right_minus=106	max_min_right_plus=0	max_pos_hash_score=410	max_right=168	max_right_minus=168	max_right_plus=0	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=6.587e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.77	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=68	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.92	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=77	side_2_redundant=0	total_non_overlap_reads=5
JC	8091	.	1	1195756	-1	1	1195761	1	0	alignment_overlap=0	coverage_minus=30	coverage_plus=31	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=214	key=1__1195756__-1__1__1195761__1__0____251__251__0__0	max_left=248	max_left_minus=243	max_left_plus=248	max_min_left=125	max_min_left_minus=123	max_min_left_plus=125	max_min_right=122	max_min_right_minus=102	max_min_right_plus=122	max_pos_hash_score=430	max_right=177	max_right_minus=177	max_right_plus=176	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.78	new_junction_read_count=69	polymorphism_frequency=1.000e+00	pos_hash_score=46	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=61
JC	8092	.	1	1195937	-1	1	1205574	1	-70	alignment_overlap=-70	coverage_minus=28	coverage_plus=17	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=144	key=1__1195937__-1__1__1205574__1__-70__TCGGTTCGCAACATGAACATCAATCCATTAAAAATATTATTCAGTTGGTGGATCAGGGGACGCGTTACGG__251__251__0__0	max_left=176	max_left_minus=176	max_left_plus=172	max_min_left=87	max_min_left_minus=87	max_min_left_plus=69	max_min_right=63	max_min_right_minus=63	max_min_right_plus=55	max_pos_hash_score=290	max_right=173	max_right_minus=173	max_right_plus=161	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.76	new_junction_read_count=45	polymorphism_frequency=9.710e-01	pos_hash_score=36	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.05	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=4	side_2_redundant=0	total_non_overlap_reads=45	unique_read_sequence=TCGGTTCGCAACATGAACATCAATCCATTAAAAATATTATTCAGTTGGTGGATCAGGGGACGCGTTACGG
JC	8093	.	1	1199279	-1	1	1201735	1	-2	alignment_overlap=-2	coverage_minus=22	coverage_plus=24	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=212	key=1__1199279__-1__1__1201735__1__-2__TT__251__251__0__0	max_left=229	max_left_minus=229	max_left_plus=201	max_min_left=83	max_min_left_minus=83	max_min_left_plus=65	max_min_right=107	max_min_right_minus=107	max_min_right_plus=75	max_pos_hash_score=426	max_right=245	max_right_minus=230	max_right_plus=245	neg_log10_pos_hash_p_value=1.1	new_junction_coverage=0.64	new_junction_read_count=56	polymorphism_frequency=1.000e+00	pos_hash_score=36	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=46	unique_read_sequence=TT
JC	8094	.	1	1202362	-1	1	1202676	1	0	alignment_overlap=2	coverage_minus=33	coverage_plus=27	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=212	key=1__1202362__-1__1__1202674__1__2____251__251__0__0	max_left=247	max_left_minus=246	max_left_plus=247	max_min_left=116	max_min_left_minus=113	max_min_left_plus=116	max_min_right=121	max_min_right_minus=121	max_min_right_plus=118	max_pos_hash_score=426	max_right=240	max_right_minus=215	max_right_plus=240	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.80	new_junction_read_count=70	polymorphism_frequency=1.000e+00	pos_hash_score=49	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=2	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=212	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=60
JC	8095	.	1	1213885	-1	1	1213886	1	-13	alignment_overlap=-13	coverage_minus=25	coverage_plus=47	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=201	key=1__1213885__-1__1__1213886__1__-13__CAAATGGCGTTAC__251__251__0__0	max_left=231	max_left_minus=217	max_left_plus=231	max_min_left=113	max_min_left_minus=113	max_min_left_plus=110	max_min_right=114	max_min_right_minus=66	max_min_right_plus=114	max_pos_hash_score=368	max_right=225	max_right_minus=225	max_right_plus=196	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.87	new_junction_read_count=72	polymorphism_frequency=1.000e+00	pos_hash_score=49	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=18	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=196	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=72	unique_read_sequence=CAAATGGCGTTAC
JC	8096	.	1	1269640	1	1	1269998	-1	0	alignment_overlap=2	coverage_minus=10	coverage_plus=31	flanking_left=251	flanking_right=251	frequency=5.628e-01	junction_possible_overlap_registers=212	key=1__1269640__1__1__1270000__-1__2____251__251__0__0	max_left=128	max_left_minus=123	max_left_plus=128	max_min_left=123	max_min_left_minus=123	max_min_left_plus=122	max_min_right=98	max_min_right_minus=97	max_min_right_plus=98	max_pos_hash_score=426	max_right=243	max_right_minus=172	max_right_plus=243	neg_log10_pos_hash_p_value=1.7	new_junction_coverage=0.58	new_junction_read_count=51	polymorphism_frequency=5.628e-01	pos_hash_score=29	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.91	side_1_overlap=2	side_1_possible_overlap_registers=214	side_1_read_count=80	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=212	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=41
JC	8097	.	1	1279917	-1	1	1280157	-1	0	alignment_overlap=9	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=4.174e-02	junction_possible_overlap_registers=205	key=1__1279917__-1__1__1280166__-1__9____251__251__0__0	max_left=161	max_left_minus=143	max_left_plus=161	max_min_left=29	max_min_left_minus=29	max_min_left_plus=0	max_min_right=99	max_min_right_minus=99	max_min_right_plus=47	max_pos_hash_score=412	max_right=213	max_right_minus=213	max_right_plus=47	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=4.174e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.87	side_1_overlap=9	side_1_possible_overlap_registers=214	side_1_read_count=77	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.76	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=64	side_2_redundant=0	total_non_overlap_reads=3
JC	8098	.	1	1281418	1	1	1282038	1	0	alignment_overlap=10	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=4.055e-02	junction_possible_overlap_registers=204	key=1__1281418__1__1__1282028__1__10____251__251__0__0	max_left=148	max_left_minus=14	max_left_plus=148	max_min_left=94	max_min_left_minus=14	max_min_left_plus=94	max_min_right=92	max_min_right_minus=0	max_min_right_plus=92	max_pos_hash_score=410	max_right=226	max_right_minus=226	max_right_plus=146	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=4.055e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.98	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=86	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.71	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=60	side_2_redundant=0	total_non_overlap_reads=3
JC	8099	.	1	1284791	-1	1	1284802	1	0	alignment_overlap=1	coverage_minus=28	coverage_plus=37	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=213	key=1__1284791__-1__1__1284801__1__1____251__251__0__0	max_left=238	max_left_minus=238	max_left_plus=235	max_min_left=122	max_min_left_minus=122	max_min_left_plus=114	max_min_right=116	max_min_right_minus=104	max_min_right_plus=116	max_pos_hash_score=428	max_right=247	max_right_minus=247	max_right_plus=229	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.75	new_junction_read_count=66	polymorphism_frequency=1.000e+00	pos_hash_score=51	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=1	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=213	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=65
JC	8100	.	1	1306890	-1	1	1306906	1	0	alignment_overlap=3	coverage_minus=21	coverage_plus=31	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=211	key=1__1306890__-1__1__1306903__1__3____251__251__0__0	max_left=245	max_left_minus=238	max_left_plus=245	max_min_left=116	max_min_left_minus=116	max_min_left_plus=105	max_min_right=123	max_min_right_minus=119	max_min_right_plus=123	max_pos_hash_score=424	max_right=225	max_right_minus=172	max_right_plus=225	neg_log10_pos_hash_p_value=0.9	new_junction_coverage=0.60	new_junction_read_count=52	polymorphism_frequency=1.000e+00	pos_hash_score=40	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=3	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=211	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=52
JC	8101	.	1	1308176	-1	1	1308188	1	0	alignment_overlap=0	coverage_minus=15	coverage_plus=17	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=214	key=1__1308176__-1__1__1308188__1__0____251__251__0__0	max_left=248	max_left_minus=241	max_left_plus=248	max_min_left=124	max_min_left_minus=124	max_min_left_plus=94	max_min_right=99	max_min_right_minus=99	max_min_right_plus=78	max_pos_hash_score=430	max_right=245	max_right_minus=235	max_right_plus=245	neg_log10_pos_hash_p_value=2.4	new_junction_coverage=0.36	new_junction_read_count=32	polymorphism_frequency=1.000e+00	pos_hash_score=23	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=32
JC	8102	.	1	1322474	1	1	1322684	1	0	alignment_overlap=9	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=6.942e-02	junction_possible_overlap_registers=205	key=1__1322474__1__1__1322675__1__9____251__251__0__0	max_left=185	max_left_minus=138	max_left_plus=185	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=64	max_min_right_minus=64	max_min_right_plus=57	max_pos_hash_score=412	max_right=64	max_right_minus=64	max_right_plus=57	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=6.942e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.69	side_1_overlap=9	side_1_possible_overlap_registers=214	side_1_read_count=61	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.26	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=22	side_2_redundant=0	total_non_overlap_reads=3
JC	8103	.	1	1322747	-1	1	1323597	1	0	alignment_overlap=2	coverage_minus=20	coverage_plus=11	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=212	key=1__1322747__-1__1__1323595__1__2____251__251__0__0	max_left=246	max_left_minus=246	max_left_plus=226	max_min_left=40	max_min_left_minus=28	max_min_left_plus=40	max_min_right=91	max_min_right_minus=91	max_min_right_plus=89	max_pos_hash_score=426	max_right=91	max_right_minus=91	max_right_plus=89	neg_log10_pos_hash_p_value=2.3	new_junction_coverage=0.38	new_junction_read_count=33	polymorphism_frequency=1.000e+00	pos_hash_score=23	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=2	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=212	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=31
JC	8104	.	1	1325600	-1	1	1325933	1	-22	alignment_overlap=-22	coverage_minus=15	coverage_plus=13	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=192	key=1__1325600__-1__1__1325933__1__-22__ACCAAATATGTTCATTAGAATG__251__251__0__0	max_left=178	max_left_minus=178	max_left_plus=148	max_min_left=112	max_min_left_minus=112	max_min_left_plus=106	max_min_right=82	max_min_right_minus=82	max_min_right_plus=64	max_pos_hash_score=386	max_right=213	max_right_minus=213	max_right_plus=146	neg_log10_pos_hash_p_value=1.9	new_junction_coverage=0.35	new_junction_read_count=28	polymorphism_frequency=1.000e+00	pos_hash_score=24	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=28	unique_read_sequence=ACCAAATATGTTCATTAGAATG
JC	8105	.	1	1327170	-1	1	1327371	-1	0	alignment_overlap=6	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=5.027e-02	junction_possible_overlap_registers=208	key=1__1327170__-1__1__1327377__-1__6____251__251__0__0	max_left=187	max_left_minus=187	max_left_plus=143	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=102	max_min_right_minus=64	max_min_right_plus=102	max_pos_hash_score=418	max_right=102	max_right_minus=64	max_right_plus=102	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=5.027e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.67	side_1_overlap=6	side_1_possible_overlap_registers=214	side_1_read_count=59	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.65	side_2_overlap=0	side_2_possible_overlap_registers=208	side_2_read_count=56	side_2_redundant=0	total_non_overlap_reads=3
JC	8106	.	1	1328978	-1	1	1329620	1	0	alignment_overlap=2	coverage_minus=12	coverage_plus=21	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=212	key=1__1328978__-1__1__1329618__1__2____251__251__0__0	max_left=246	max_left_minus=246	max_left_plus=246	max_min_left=98	max_min_left_minus=98	max_min_left_plus=0	max_min_right=105	max_min_right_minus=105	max_min_right_plus=94	max_pos_hash_score=426	max_right=141	max_right_minus=141	max_right_plus=94	neg_log10_pos_hash_p_value=1.9	new_junction_coverage=0.47	new_junction_read_count=41	polymorphism_frequency=1.000e+00	pos_hash_score=27	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=2	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=212	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=33
JC	8107	.	1	1330173	-1	1	1330174	1	-9	alignment_overlap=-9	coverage_minus=26	coverage_plus=21	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=205	key=1__1330173__-1__1__1330174__1__-9__TAAGTTGGG__251__251__0__0	max_left=233	max_left_minus=233	max_left_plus=218	max_min_left=120	max_min_left_minus=120	max_min_left_plus=109	max_min_right=117	max_min_right_minus=117	max_min_right_plus=75	max_pos_hash_score=380	max_right=227	max_right_minus=206	max_right_plus=227	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.65	new_junction_read_count=55	polymorphism_frequency=1.000e+00	pos_hash_score=42	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=16	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=198	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=47	unique_read_sequence=TAAGTTGGG
JC	8108	.	1	1330313	1	1	1330302	-1	0	alignment_overlap=27	coverage_minus=13	coverage_plus=6	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=187	key=1__1330313__1__1__1330329__-1__27____251__251__0__0	max_left=217	max_left_minus=179	max_left_plus=217	max_min_left=107	max_min_left_minus=61	max_min_left_plus=107	max_min_right=108	max_min_right_minus=108	max_min_right_plus=103	max_pos_hash_score=376	max_right=129	max_right_minus=129	max_right_plus=117	neg_log10_pos_hash_p_value=3.1	new_junction_coverage=0.29	new_junction_read_count=22	polymorphism_frequency=1.000e+00	pos_hash_score=15	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=27	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=187	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=19
JC	8109	.	1	1348191	1	1	1348479	1	0	alignment_overlap=8	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=6.616e-02	junction_possible_overlap_registers=206	key=1__1348191__1__1__1348471__1__8____251__251__0__0	max_left=134	max_left_minus=79	max_left_plus=134	max_min_left=79	max_min_left_minus=79	max_min_left_plus=0	max_min_right=28	max_min_right_minus=0	max_min_right_plus=28	max_pos_hash_score=414	max_right=127	max_right_minus=127	max_right_plus=28	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=6.616e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.40	side_1_overlap=8	side_1_possible_overlap_registers=214	side_1_read_count=35	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.60	side_2_overlap=0	side_2_possible_overlap_registers=206	side_2_read_count=51	side_2_redundant=0	total_non_overlap_reads=3
JC	8110	.	1	1387521	-1	1	1387522	1	-6	alignment_overlap=-6	coverage_minus=45	coverage_plus=40	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=208	key=1__1387521__-1__1__1387522__1__-6__GCGCCT__251__251__0__0	max_left=241	max_left_minus=241	max_left_plus=231	max_min_left=114	max_min_left_minus=105	max_min_left_plus=114	max_min_right=118	max_min_right_minus=118	max_min_right_plus=93	max_pos_hash_score=418	max_right=237	max_right_minus=235	max_right_plus=237	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.99	new_junction_read_count=85	polymorphism_frequency=1.000e+00	pos_hash_score=53	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=85	unique_read_sequence=GCGCCT
JC	8111	.	1	1394221	1	1	1394315	1	0	alignment_overlap=22	coverage_minus=3	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=5.514e-02	junction_possible_overlap_registers=192	key=1__1394221__1__1__1394293__1__22____251__251__0__0	max_left=51	max_left_minus=51	max_left_plus=45	max_min_left=51	max_min_left_minus=51	max_min_left_plus=45	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=386	max_right=177	max_right_minus=177	max_right_plus=157	neg_log10_pos_hash_p_value=6.5	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=5.514e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.87	side_1_overlap=22	side_1_possible_overlap_registers=214	side_1_read_count=77	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.86	side_2_overlap=0	side_2_possible_overlap_registers=192	side_2_read_count=68	side_2_redundant=0	total_non_overlap_reads=4
JC	8112	.	1	1398269	-1	1	1398270	1	-13	alignment_overlap=-13	coverage_minus=26	coverage_plus=40	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=201	key=1__1398269__-1__1__1398270__1__-13__AATTTCAACAGTG__251__251__0__0	max_left=234	max_left_minus=201	max_left_plus=234	max_min_left=112	max_min_left_minus=112	max_min_left_plus=98	max_min_right=116	max_min_right_minus=107	max_min_right_plus=116	max_pos_hash_score=402	max_right=237	max_right_minus=223	max_right_plus=237	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.77	new_junction_read_count=64	polymorphism_frequency=1.000e+00	pos_hash_score=46	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=1	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=213	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=66	unique_read_sequence=AATTTCAACAGTG
JC	8113	.	1	1415502	-1	1	1415918	1	-34	alignment_overlap=-34	coverage_minus=22	coverage_plus=12	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=180	key=1__1415502__-1__1__1415918__1__-34__GTAAGTGTCGTTTTTATAACGGCGTTGGCTGATA__251__251__0__0	max_left=195	max_left_minus=195	max_left_plus=195	max_min_left=108	max_min_left_minus=108	max_min_left_plus=90	max_min_right=105	max_min_right_minus=105	max_min_right_plus=56	max_pos_hash_score=362	max_right=215	max_right_minus=215	max_right_plus=182	neg_log10_pos_hash_p_value=1.3	new_junction_coverage=0.46	new_junction_read_count=34	polymorphism_frequency=1.000e+00	pos_hash_score=28	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=34	unique_read_sequence=GTAAGTGTCGTTTTTATAACGGCGTTGGCTGATA
JC	8114	.	1	1432247	-1	1	1432252	1	0	alignment_overlap=0	coverage_minus=8	coverage_plus=15	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=214	key=1__1432247__-1__1__1432252__1__0____251__251__0__0	max_left=244	max_left_minus=163	max_left_plus=244	max_min_left=74	max_min_left_minus=69	max_min_left_plus=74	max_min_right=123	max_min_right_minus=105	max_min_right_plus=123	max_pos_hash_score=430	max_right=231	max_right_minus=211	max_right_plus=231	neg_log10_pos_hash_p_value=2.6	new_junction_coverage=0.26	new_junction_read_count=23	polymorphism_frequency=1.000e+00	pos_hash_score=21	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=23
JC	8115	.	1	1449278	1	1	1449405	1	0	alignment_overlap=5	coverage_minus=4	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=5.831e-02	junction_possible_overlap_registers=209	key=1__1449278__1__1__1449400__1__5____251__251__0__0	max_left=119	max_left_minus=119	max_left_plus=119	max_min_left=119	max_min_left_minus=119	max_min_left_plus=119	max_min_right=63	max_min_right_minus=63	max_min_right_plus=58	max_pos_hash_score=420	max_right=164	max_right_minus=164	max_right_plus=124	neg_log10_pos_hash_p_value=6.8	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=5.831e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.08	side_1_overlap=5	side_1_possible_overlap_registers=214	side_1_read_count=95	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.17	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=101	side_2_redundant=0	total_non_overlap_reads=6
JC	8116	.	1	1449282	-1	1	1449399	-1	0	alignment_overlap=5	coverage_minus=0	coverage_plus=6	flanking_left=251	flanking_right=251	frequency=5.750e-02	junction_possible_overlap_registers=209	key=1__1449282__-1__1__1449404__-1__5____251__251__0__0	max_left=129	max_left_minus=0	max_left_plus=129	max_min_left=59	max_min_left_minus=0	max_min_left_plus=59	max_min_right=117	max_min_right_minus=0	max_min_right_plus=117	max_pos_hash_score=420	max_right=119	max_right_minus=0	max_right_plus=119	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=5.750e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.12	side_1_overlap=5	side_1_possible_overlap_registers=214	side_1_read_count=99	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.16	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=100	side_2_redundant=0	total_non_overlap_reads=6
JC	8117	.	1	1455376	-1	1	1455600	-1	0	alignment_overlap=11	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=3.241e-02	junction_possible_overlap_registers=203	key=1__1455376__-1__1__1455611__-1__11____251__251__0__0	max_left=83	max_left_minus=83	max_left_plus=69	max_min_left=83	max_min_left_minus=83	max_min_left_plus=69	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=408	max_right=170	max_right_minus=170	max_right_plus=170	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.241e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.08	side_1_overlap=11	side_1_possible_overlap_registers=214	side_1_read_count=95	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.06	side_2_overlap=0	side_2_possible_overlap_registers=203	side_2_read_count=89	side_2_redundant=0	total_non_overlap_reads=3
JC	8118	.	1	1461806	-1	1	1461875	1	0	alignment_overlap=32	coverage_minus=35	coverage_plus=39	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=182	key=1__1461806__-1__1__1461843__1__32____251__251__0__0	max_left=217	max_left_minus=207	max_left_plus=217	max_min_left=105	max_min_left_minus=105	max_min_left_plus=105	max_min_right=106	max_min_right_minus=106	max_min_right_plus=96	max_pos_hash_score=366	max_right=216	max_right_minus=197	max_right_plus=216	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.99	new_junction_read_count=74	polymorphism_frequency=1.000e+00	pos_hash_score=54	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=32	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=182	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=74
JC	8119	.	1	1470788	-1	1	1471466	-1	0	alignment_overlap=7	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=2.932e-02	junction_possible_overlap_registers=207	key=1__1470788__-1__1__1471473__-1__7____251__251__0__0	max_left=195	max_left_minus=195	max_left_plus=88	max_min_left=88	max_min_left_minus=0	max_min_left_plus=88	max_min_right=70	max_min_right_minus=70	max_min_right_plus=0	max_pos_hash_score=416	max_right=156	max_right_minus=70	max_right_plus=156	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=2.932e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.17	side_1_overlap=7	side_1_possible_overlap_registers=214	side_1_read_count=103	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.16	side_2_overlap=0	side_2_possible_overlap_registers=207	side_2_read_count=99	side_2_redundant=0	total_non_overlap_reads=3
JC	8120	.	1	1484381	-1	1	1484385	1	0	alignment_overlap=0	coverage_minus=4	coverage_plus=4	flanking_left=251	flanking_right=251	frequency=1.429e-01	junction_possible_overlap_registers=214	key=1__1484381__-1__1__1484385__1__0____251__251__0__0	max_left=19	max_left_minus=10	max_left_plus=19	max_min_left=19	max_min_left_minus=10	max_min_left_plus=19	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=430	max_right=246	max_right_minus=243	max_right_plus=246	neg_log10_pos_hash_p_value=6.1	new_junction_coverage=0.09	new_junction_read_count=8	polymorphism_frequency=1.429e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.54	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=48	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.54	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=48	side_2_redundant=0	total_non_overlap_reads=8
JC	8121	.	1	1502777	-1	1	1503146	-1	0	alignment_overlap=9	coverage_minus=3	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=5.832e-02	junction_possible_overlap_registers=205	key=1__1502777__-1__1__1503155__-1__9____251__251__0__0	max_left=110	max_left_minus=86	max_left_plus=110	max_min_left=110	max_min_left_minus=77	max_min_left_plus=110	max_min_right=86	max_min_right_minus=86	max_min_right_plus=0	max_pos_hash_score=412	max_right=210	max_right_minus=165	max_right_plus=210	neg_log10_pos_hash_p_value=6.3	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=5.832e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.15	side_1_overlap=9	side_1_possible_overlap_registers=214	side_1_read_count=101	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.15	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=97	side_2_redundant=0	total_non_overlap_reads=6
JC	8122	.	1	1505561	1	1	1505821	1	0	alignment_overlap=4	coverage_minus=2	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=5.283e-02	junction_possible_overlap_registers=210	key=1__1505561__1__1__1505817__1__4____251__251__0__0	max_left=163	max_left_minus=163	max_left_plus=149	max_min_left=18	max_min_left_minus=0	max_min_left_plus=18	max_min_right=97	max_min_right_minus=96	max_min_right_plus=97	max_pos_hash_score=422	max_right=241	max_right_minus=96	max_right_plus=241	neg_log10_pos_hash_p_value=6.4	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=5.283e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.04	side_1_overlap=4	side_1_possible_overlap_registers=214	side_1_read_count=92	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.03	side_2_overlap=0	side_2_possible_overlap_registers=210	side_2_read_count=89	side_2_redundant=0	total_non_overlap_reads=5
JC	8123	.	1	1563611	-1	1	1563887	-1	0	alignment_overlap=9	coverage_minus=2	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=4.249e-02	junction_possible_overlap_registers=205	key=1__1563611__-1__1__1563896__-1__9____251__251__0__0	max_left=146	max_left_minus=146	max_left_plus=108	max_min_left=67	max_min_left_minus=44	max_min_left_plus=67	max_min_right=96	max_min_right_minus=96	max_min_right_plus=18	max_pos_hash_score=412	max_right=174	max_right_minus=110	max_right_plus=174	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=4.249e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.00	side_1_overlap=9	side_1_possible_overlap_registers=214	side_1_read_count=88	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.14	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=96	side_2_redundant=0	total_non_overlap_reads=4
JC	8124	.	1	1571598	1	1	1571960	1	0	alignment_overlap=6	coverage_minus=3	coverage_plus=0	flanking_left=251	flanking_right=251	frequency=3.198e-02	junction_possible_overlap_registers=208	key=1__1571598__1__1__1571954__1__6____251__251__0__0	max_left=239	max_left_minus=239	max_left_plus=0	max_min_left=75	max_min_left_minus=75	max_min_left_plus=0	max_min_right=84	max_min_right_minus=84	max_min_right_plus=0	max_pos_hash_score=418	max_right=170	max_right_minus=170	max_right_plus=0	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=3.198e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.95	side_1_overlap=6	side_1_possible_overlap_registers=214	side_1_read_count=84	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.17	side_2_overlap=0	side_2_possible_overlap_registers=208	side_2_read_count=100	side_2_redundant=0	total_non_overlap_reads=3
JC	8125	.	1	1589529	1	1	1589559	1	0	alignment_overlap=13	coverage_minus=0	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=4.449e-02	junction_possible_overlap_registers=201	key=1__1589529__1__1__1589546__1__13____251__251__0__0	max_left=237	max_left_minus=0	max_left_plus=237	max_min_left=114	max_min_left_minus=0	max_min_left_plus=114	max_min_right=75	max_min_right_minus=0	max_min_right_plus=75	max_pos_hash_score=404	max_right=123	max_right_minus=0	max_right_plus=123	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=4.449e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.77	side_1_overlap=13	side_1_possible_overlap_registers=214	side_1_read_count=68	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.78	side_2_overlap=0	side_2_possible_overlap_registers=201	side_2_read_count=65	side_2_redundant=0	total_non_overlap_reads=3
JC	8126	.	1	1645858	1	1	1645853	-1	0	alignment_overlap=19	coverage_minus=9	coverage_plus=6	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=195	key=1__1645858__1__1__1645872__-1__19____251__251__0__0	max_left=221	max_left_minus=221	max_left_plus=198	max_min_left=102	max_min_left_minus=63	max_min_left_plus=102	max_min_right=75	max_min_right_minus=75	max_min_right_plus=39	max_pos_hash_score=392	max_right=169	max_right_minus=169	max_right_plus=130	neg_log10_pos_hash_p_value=3.5	new_junction_coverage=0.19	new_junction_read_count=15	polymorphism_frequency=1.000e+00	pos_hash_score=14	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=19	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=195	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=15
JC	8127	.	1	1699358	-1	1	1699359	1	-6	alignment_overlap=-6	coverage_minus=30	coverage_plus=35	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=208	key=1__1699358__-1__1__1699359__1__-6__ATTAAC__251__251__0__0	max_left=236	max_left_minus=204	max_left_plus=236	max_min_left=121	max_min_left_minus=116	max_min_left_plus=121	max_min_right=121	max_min_right_minus=110	max_min_right_plus=121	max_pos_hash_score=408	max_right=240	max_right_minus=234	max_right_plus=240	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.73	new_junction_read_count=63	polymorphism_frequency=1.000e+00	pos_hash_score=51	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=5	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=209	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=65	unique_read_sequence=ATTAAC
JC	8128	.	1	1767405	1	1	1767753	1	0	alignment_overlap=12	coverage_minus=0	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=4.250e-02	junction_possible_overlap_registers=202	key=1__1767405__1__1__1767741__1__12____251__251__0__0	max_left=228	max_left_minus=0	max_left_plus=228	max_min_left=106	max_min_left_minus=0	max_min_left_plus=106	max_min_right=11	max_min_right_minus=0	max_min_right_plus=11	max_pos_hash_score=406	max_right=134	max_right_minus=0	max_right_plus=134	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=4.250e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.77	side_1_overlap=12	side_1_possible_overlap_registers=214	side_1_read_count=68	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.85	side_2_overlap=0	side_2_possible_overlap_registers=202	side_2_read_count=71	side_2_redundant=0	total_non_overlap_reads=3
JC	8129	.	1	1780597	-1	1	1780598	1	-8	alignment_overlap=-8	coverage_minus=47	coverage_plus=46	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=206	key=1__1780597__-1__1__1780598__1__-8__GTGCAGAC__251__251__0__0	max_left=242	max_left_minus=241	max_left_plus=242	max_min_left=119	max_min_left_minus=94	max_min_left_plus=119	max_min_right=116	max_min_right_minus=113	max_min_right_plus=116	max_pos_hash_score=414	max_right=238	max_right_minus=238	max_right_plus=234	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.10	new_junction_read_count=93	polymorphism_frequency=1.000e+00	pos_hash_score=61	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=93	unique_read_sequence=GTGCAGAC
JC	8130	.	1	1790291	-1	1	1790461	-1	0	alignment_overlap=6	coverage_minus=1	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=6.056e-02	junction_possible_overlap_registers=208	key=1__1790291__-1__1__1790467__-1__6____251__251__0__0	max_left=188	max_left_minus=148	max_left_plus=188	max_min_left=108	max_min_left_minus=0	max_min_left_plus=108	max_min_right=97	max_min_right_minus=97	max_min_right_plus=23	max_pos_hash_score=418	max_right=138	max_right_minus=97	max_right_plus=138	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=6.056e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.77	side_1_overlap=6	side_1_possible_overlap_registers=214	side_1_read_count=68	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.68	side_2_overlap=0	side_2_possible_overlap_registers=208	side_2_read_count=58	side_2_redundant=0	total_non_overlap_reads=4
JC	8131	.	1	1790324	-1	1	1790431	-1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=6.025e-02	junction_possible_overlap_registers=204	key=1__1790324__-1__1__1790441__-1__10____251__251__0__0	max_left=133	max_left_minus=101	max_left_plus=133	max_min_left=101	max_min_left_minus=101	max_min_left_plus=68	max_min_right=108	max_min_right_minus=0	max_min_right_plus=108	max_pos_hash_score=410	max_right=108	max_right_minus=108	max_right_plus=108	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=6.025e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.78	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=69	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.70	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=59	side_2_redundant=0	total_non_overlap_reads=4
JC	8132	.	1	1813725	-1	1	1813903	-1	0	alignment_overlap=6	coverage_minus=1	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=3.504e-02	junction_possible_overlap_registers=208	key=1__1813725__-1__1__1813909__-1__6____251__251__0__0	max_left=198	max_left_minus=84	max_left_plus=198	max_min_left=84	max_min_left_minus=84	max_min_left_plus=74	max_min_right=47	max_min_right_minus=0	max_min_right_plus=47	max_pos_hash_score=418	max_right=179	max_right_minus=160	max_right_plus=179	neg_log10_pos_hash_p_value=6.8	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=3.504e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.09	side_1_overlap=6	side_1_possible_overlap_registers=214	side_1_read_count=96	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.48	side_2_overlap=0	side_2_possible_overlap_registers=208	side_2_read_count=127	side_2_redundant=0	total_non_overlap_reads=4
JC	8133	.	1	1817027	-1	1	1817398	-1	0	alignment_overlap=10	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=2.938e-02	junction_possible_overlap_registers=204	key=1__1817027__-1__1__1817408__-1__10____251__251__0__0	max_left=165	max_left_minus=165	max_left_plus=50	max_min_left=50	max_min_left_minus=0	max_min_left_plus=50	max_min_right=75	max_min_right_minus=75	max_min_right_plus=0	max_pos_hash_score=410	max_right=208	max_right_minus=75	max_right_plus=208	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=2.938e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.17	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=103	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.19	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=100	side_2_redundant=0	total_non_overlap_reads=3
JC	8134	.	1	1820992	1	1	1820976	-1	0	alignment_overlap=30	coverage_minus=35	coverage_plus=18	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=184	key=1__1820992__1__1__1821006__-1__30____251__251__0__0	max_left=214	max_left_minus=196	max_left_plus=214	max_min_left=98	max_min_left_minus=92	max_min_left_plus=98	max_min_right=105	max_min_right_minus=105	max_min_right_plus=99	max_pos_hash_score=370	max_right=220	max_right_minus=220	max_right_plus=215	neg_log10_pos_hash_p_value=0.8	new_junction_coverage=0.70	new_junction_read_count=53	polymorphism_frequency=1.000e+00	pos_hash_score=37	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=30	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=184	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=53
JC	8135	.	1	1826963	-1	1	1827068	-1	0	alignment_overlap=10	coverage_minus=0	coverage_plus=4	flanking_left=251	flanking_right=251	frequency=4.818e-02	junction_possible_overlap_registers=204	key=1__1826963__-1__1__1827078__-1__10____251__251__0__0	max_left=164	max_left_minus=0	max_left_plus=164	max_min_left=45	max_min_left_minus=0	max_min_left_plus=45	max_min_right=105	max_min_right_minus=0	max_min_right_plus=105	max_pos_hash_score=410	max_right=105	max_right_minus=0	max_right_plus=105	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=4.818e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.96	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=85	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.92	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=77	side_2_redundant=0	total_non_overlap_reads=4
JC	8136	.	1	1831505	1	1	1832633	1	0	alignment_overlap=10	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=4.005e-02	junction_possible_overlap_registers=204	key=1__1831505__1__1__1832623__1__10____251__251__0__0	max_left=168	max_left_minus=168	max_left_plus=150	max_min_left=77	max_min_left_minus=0	max_min_left_plus=77	max_min_right=46	max_min_right_minus=46	max_min_right_plus=46	max_pos_hash_score=410	max_right=164	max_right_minus=46	max_right_plus=164	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=4.005e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.77	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=68	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.94	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=79	side_2_redundant=0	total_non_overlap_reads=3
JC	8137	.	1	1875873	1	1	1876041	1	0	alignment_overlap=5	coverage_minus=2	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.471e-02	junction_possible_overlap_registers=209	key=1__1875873__1__1__1876036__1__5____251__251__0__0	max_left=118	max_left_minus=59	max_left_plus=118	max_min_left=59	max_min_left_minus=59	max_min_left_plus=59	max_min_right=106	max_min_right_minus=0	max_min_right_plus=106	max_pos_hash_score=420	max_right=187	max_right_minus=187	max_right_plus=107	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=3.471e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.21	side_1_overlap=5	side_1_possible_overlap_registers=214	side_1_read_count=107	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.37	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=118	side_2_redundant=0	total_non_overlap_reads=4
JC	8138	.	1	1893935	1	1	1894110	1	0	alignment_overlap=12	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=3.896e-02	junction_possible_overlap_registers=202	key=1__1893935__1__1__1894098__1__12____251__251__0__0	max_left=117	max_left_minus=117	max_left_plus=87	max_min_left=117	max_min_left_minus=117	max_min_left_plus=87	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=406	max_right=152	max_right_minus=146	max_right_plus=152	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.896e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.81	side_1_overlap=12	side_1_possible_overlap_registers=214	side_1_read_count=71	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.97	side_2_overlap=0	side_2_possible_overlap_registers=202	side_2_read_count=81	side_2_redundant=0	total_non_overlap_reads=3
JC	8139	.	1	1923469	1	1	1923623	1	0	alignment_overlap=13	coverage_minus=5	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=9.445e-02	junction_possible_overlap_registers=201	key=1__1923469__1__1__1923610__1__13____251__251__0__0	max_left=82	max_left_minus=43	max_left_plus=82	max_min_left=82	max_min_left_minus=43	max_min_left_plus=82	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=404	max_right=209	max_right_minus=209	max_right_plus=160	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.08	new_junction_read_count=7	polymorphism_frequency=9.445e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.70	side_1_overlap=13	side_1_possible_overlap_registers=214	side_1_read_count=62	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.92	side_2_overlap=0	side_2_possible_overlap_registers=201	side_2_read_count=76	side_2_redundant=0	total_non_overlap_reads=7
JC	8140	.	1	2001544	-1	1	2001664	-1	0	alignment_overlap=8	coverage_minus=1	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=5.909e-02	junction_possible_overlap_registers=206	key=1__2001544__-1__1__2001672__-1__8____251__251__0__0	max_left=187	max_left_minus=165	max_left_plus=187	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=113	max_min_right_minus=54	max_min_right_plus=113	max_pos_hash_score=414	max_right=113	max_right_minus=54	max_right_plus=113	neg_log10_pos_hash_p_value=6.8	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=5.909e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.79	side_1_overlap=8	side_1_possible_overlap_registers=214	side_1_read_count=70	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.71	side_2_overlap=0	side_2_possible_overlap_registers=206	side_2_read_count=60	side_2_redundant=0	total_non_overlap_reads=4
JC	8141	.	1	2028875	1	1	2028868	-1	0	alignment_overlap=7	coverage_minus=32	coverage_plus=40	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=207	key=1__2028875__1__1__2028875__-1__7____251__251__0__0	max_left=237	max_left_minus=230	max_left_plus=237	max_min_left=121	max_min_left_minus=121	max_min_left_plus=109	max_min_right=88	max_min_right_minus=85	max_min_right_plus=88	max_pos_hash_score=416	max_right=240	max_right_minus=235	max_right_plus=240	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.86	new_junction_read_count=73	polymorphism_frequency=1.000e+00	pos_hash_score=52	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=7	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=207	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=72
JC	8142	.	1	2032143	-1	1	2032144	1	-4	alignment_overlap=-4	coverage_minus=41	coverage_plus=30	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=210	key=1__2032143__-1__1__2032144__1__-4__GTAA__251__251__0__0	max_left=246	max_left_minus=230	max_left_plus=246	max_min_left=121	max_min_left_minus=121	max_min_left_plus=98	max_min_right=122	max_min_right_minus=122	max_min_right_plus=122	max_pos_hash_score=414	max_right=243	max_right_minus=243	max_right_plus=222	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.79	new_junction_read_count=68	polymorphism_frequency=1.000e+00	pos_hash_score=47	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=4	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=210	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=71	unique_read_sequence=GTAA
JC	8143	.	1	2032563	-1	1	2032564	1	-5	alignment_overlap=-5	coverage_minus=53	coverage_plus=52	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=209	key=1__2032563__-1__1__2032564__1__-5__CGCCC__251__251__0__0	max_left=230	max_left_minus=230	max_left_plus=219	max_min_left=122	max_min_left_minus=111	max_min_left_plus=122	max_min_right=121	max_min_right_minus=121	max_min_right_plus=111	max_pos_hash_score=400	max_right=243	max_right_minus=243	max_right_plus=216	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.20	new_junction_read_count=103	polymorphism_frequency=9.904e-01	pos_hash_score=68	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=10	side_1_coverage=0.01	side_1_overlap=0	side_1_possible_overlap_registers=204	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.01	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=1	side_2_redundant=0	total_non_overlap_reads=105	unique_read_sequence=CGCCC
JC	8144	.	1	2034227	-1	1	2035229	1	0	alignment_overlap=5	coverage_minus=37	coverage_plus=39	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=209	key=1__2034227__-1__1__2035224__1__5____251__251__0__0	max_left=243	max_left_minus=243	max_left_plus=238	max_min_left=122	max_min_left_minus=115	max_min_left_plus=122	max_min_right=120	max_min_right_minus=120	max_min_right_plus=116	max_pos_hash_score=420	max_right=242	max_right_minus=242	max_right_plus=240	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.88	new_junction_read_count=76	polymorphism_frequency=1.000e+00	pos_hash_score=59	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=5	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=76
JC	8145	.	1	2075187	-1	1	2075987	-1	0	alignment_overlap=6	coverage_minus=1	coverage_plus=4	flanking_left=251	flanking_right=251	frequency=5.174e-02	junction_possible_overlap_registers=208	key=1__2075187__-1__1__2075993__-1__6____251__251__0__0	max_left=138	max_left_minus=115	max_left_plus=138	max_min_left=65	max_min_left_minus=0	max_min_left_plus=65	max_min_right=107	max_min_right_minus=107	max_min_right_plus=107	max_pos_hash_score=418	max_right=107	max_right_minus=107	max_right_plus=107	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=5.174e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.10	side_1_overlap=6	side_1_possible_overlap_registers=214	side_1_read_count=97	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.04	side_2_overlap=0	side_2_possible_overlap_registers=208	side_2_read_count=89	side_2_redundant=0	total_non_overlap_reads=5
UN	8146	.	1	5263	5264
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