#=GENOME_DIFF	1.0
#=CREATED	10:28:53 07 Feb 2022
#=PROGRAM	breseq 0.35.4 
#=COMMAND	breseq -j 6 -r /data/p127804/PROJECTS/JanMaarten/Yanyan_202201_SNP/genomes/4R.gbk /data/p127804/PROJECTS/JanMaarten/Yanyan_202201_SNP/fastq/ATCC_S10_L001_R1_001.fastq.gz -o /data/p127804/PROJECTS/JanMaarten/Yanyan_202201_SNP/breseq_results/ATCC_vs_gbk4R
#=REFSEQ	/data/p127804/PROJECTS/JanMaarten/Yanyan_202201_SNP/genomes/4R.gbk
#=READSEQ	/data/p127804/PROJECTS/JanMaarten/Yanyan_202201_SNP/fastq/ATCC_S10_L001_R1_001.fastq.gz
#=CONVERTED-BASES	194754060
#=CONVERTED-READS	902159
#=INPUT-BASES	194778000
#=INPUT-READS	902843
#=MAPPED-BASES	180690269
#=MAPPED-READS	838713
SNP	1	3752	1	662	T
SNP	2	3753	1	683	T
SNP	3	3754	1	2782	A
SNP	4	3755	1	4971	T
SNP	5	3756	1	6348	G
SNP	6	3757	1	7533	A
SNP	7	3758	1	8371	G
SNP	8	3759	1	9947	C
SNP	9	3760	1	10676	T
SNP	10	3761	1	11924	C
SNP	11	3762	1	12551	T
SNP	12	3764	1	14717	C
SNP	13	3765	1	14868	G
DEL	14	7915,7986	1	15759	388
SNP	15	3766	1	16619	T
SNP	16	3767	1	17459	T
SNP	17	3768	1	18064	A
SNP	18	3769	1	18236	T
SNP	19	3770	1	19497	A
SNP	20	3771	1	19694	G
SNP	21	3772	1	20054	T
SNP	22	3773	1	20331	G
SNP	23	3774	1	20682	A
SNP	24	3775	1	22477	C
SNP	25	3776	1	23617	G
SNP	26	3777	1	27606	C
SNP	27	3778	1	27814	C
INS	28	7987	1	30775	GAAA
SNP	29	3779	1	31153	G
SUB	30	7916,7988	1	31357	1521	TCCGGCAGTAG
SNP	31	3780	1	32941	A
SNP	32	3781	1	36648	A
SNP	33	3782	1	36927	C
SNP	34	3783	1	37641	G
SNP	35	3784	1	38571	C
SNP	36	3785	1	38719	G
SNP	37	3786	1	40842	G
SNP	38	3787	1	41100	A
SNP	39	3788	1	41928	T
SNP	40	3789	1	43662	T
SNP	41	3790	1	45778	G
SNP	42	3791	1	45838	C
SNP	43	3792	1	46118	G
SNP	44	3793	1	46905	G
SNP	45	3794	1	51033	A
SNP	46	3795	1	53202	A
SNP	47	3796	1	55356	C
SNP	48	3797	1	55509	G
SNP	49	3798	1	57038	C
SNP	50	3800	1	58225	G
SNP	51	3801	1	58292	C
SNP	52	3802	1	58929	T
SNP	53	3803	1	59294	T
DEL	54	7917,7990	1	59311	6	repeat_length=6	repeat_new_copies=2	repeat_ref_copies=3	repeat_seq=GCGTGC
SNP	55	3804	1	59444	C
SNP	56	3805	1	61271	C
SNP	57	3806	1	61390	A
DEL	58	3807	1	61826	1	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=9	repeat_seq=T
SNP	59	3808	1	62563	G
SNP	60	3809	1	62771	T
SNP	61	3810	1	63403	A
SNP	62	3811	1	63735	A
SNP	63	3812	1	64778	G
SNP	64	3813	1	66356	A
SNP	65	3814	1	67477	T
SNP	66	3815	1	68695	G
SNP	67	3816	1	69917	C
SNP	68	3819	1	72452	T
SNP	69	3820	1	72754	C
SNP	70	3821	1	73254	A
SNP	71	3822	1	73529	A
SNP	72	3823	1	74892	T
SNP	73	3824	1	75270	A
SNP	74	3825	1	75569	T
SNP	75	3826	1	75832	A
SNP	76	3830	1	76758	C
SNP	77	3831	1	78543	T
SNP	78	3832	1	80646	A
SNP	79	3833	1	80650	C
SNP	80	3834	1	81876	C
SNP	81	3835	1	82027	T
SNP	82	3836	1	82724	G
SNP	83	3837	1	83977	C
SNP	84	3838	1	84758	T
SNP	85	3839	1	85808	T
SNP	86	3840	1	87558	C
SNP	87	3841	1	88251	T
SNP	88	3842	1	89499	C
SNP	89	3843	1	90348	C
SNP	90	3846	1	90554	T
SNP	91	3847	1	90796	T
SNP	92	3848	1	91264	C
SNP	93	3849	1	92010	A
SNP	94	3850	1	92720	T
SNP	95	3851	1	92894	A
SNP	96	3852	1	94000	C
SNP	97	3853	1	94724	T
SNP	98	3854	1	95085	A
SNP	99	3855	1	95763	G
SNP	100	3856	1	95874	T
SNP	101	3857	1	96601	T
SNP	102	3858	1	96664	C
SNP	103	3859	1	98192	A
SNP	104	3860	1	99274	T
SNP	105	3861	1	99900	A
SNP	106	3862	1	100518	C
SNP	107	3863	1	101714	T
SNP	108	3864	1	102233	T
SNP	109	3865	1	102771	T
SNP	110	3866	1	102902	C
SNP	111	3867	1	103930	A
SNP	112	3868	1	104231	T
SNP	113	3869	1	104265	G
SNP	114	3870	1	104696	C
SNP	115	3871	1	106621	G
SNP	116	3872	1	108239	G
SNP	117	3873	1	109003	A
SNP	118	3874	1	109313	C
SNP	119	3875	1	111452	G
SNP	120	3876	1	111860	A
SNP	121	3877	1	112818	C
SNP	122	3878	1	117171	T
SNP	123	3879	1	117702	C
SNP	124	3880	1	117840	A
SNP	125	3881	1	118261	T
SNP	126	3882	1	118321	T
DEL	127	7918,7993	1	118608	17
SNP	128	3883	1	118791	T
SNP	129	3884	1	119658	T
SNP	130	3885	1	122993	G
DEL	131	3886	1	124548	1
SNP	132	3887	1	124817	C
SNP	133	3888	1	127087	G
SNP	134	3889	1	131502	C
SNP	135	3890	1	131891	A
SNP	136	3891	1	132532	C
SNP	137	3892	1	132648	A
SNP	138	3893	1	133080	C
INS	139	3894,3895	1	133102	CC
SNP	140	3896	1	134784	A
SNP	141	3897	1	135024	C
SNP	142	3898	1	138113	G
SNP	143	3899	1	138403	C
INS	144	3900	1	141077	T	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=7	repeat_seq=T
INS	145	3901	1	141142	C
SNP	146	3902	1	143328	T
SNP	147	3903	1	144195	C
SNP	148	3904	1	145483	A
INS	149	3905	1	146302	A	repeat_length=1	repeat_new_copies=9	repeat_ref_copies=8	repeat_seq=A
SNP	150	3906	1	147575	A
SNP	151	3907	1	148703	C
SNP	152	3908	1	149716	G
SNP	153	3909	1	149790	G
SNP	154	3910	1	152551	T
DEL	155	7919,7996	1	153447	39
SUB	156	7920,7997	1	153865	1460	ACCGATTACGTCAGCGGCTTGTGTAACATCGGT
DEL	157	7921,7998	1	155724	21	repeat_length=7	repeat_new_copies=2	repeat_ref_copies=5	repeat_seq=GCTTCTG
SNP	158	3911	1	155826	A
SNP	159	3912	1	156497	C
SNP	160	3913	1	158463	C
SNP	161	3914	1	159273	T
SNP	162	3915	1	159846	T
SNP	163	3916	1	161826	C
SNP	164	3917	1	162277	C
SNP	165	3918	1	162599	T
SNP	166	3919	1	163373	A
SNP	167	3920	1	163392	G
SNP	168	3921	1	163942	A
SNP	169	3922	1	163997	A
SNP	170	3923	1	166050	A
SNP	171	3924	1	169788	C
SNP	172	3925	1	170862	C
SNP	173	3926	1	171809	A
DEL	174	3927	1	172271	1
INS	175	3928	1	172276	T
SNP	176	3929	1	172357	G
SNP	177	3930	1	173104	A
SNP	178	3931	1	173255	T
SNP	179	3932	1	173503	A
SNP	180	3933	1	174022	C
SNP	181	3934	1	174640	T
SNP	182	3941	1	176738	G
SNP	183	3942	1	178345	G
SNP	184	3943	1	178940	G
SNP	185	3944	1	179410	T
SNP	186	3945	1	179577	A
SNP	187	3946	1	184786	C
SNP	188	3947	1	185850	A
SNP	189	3955	1	186822	C
SNP	190	3956	1	187296	G
SNP	191	3957	1	190491	T
SNP	192	3958	1	190963	T
SNP	193	3959	1	193246	T
SNP	194	3960	1	195328	A
SNP	195	3961	1	196508	C
SNP	196	3962	1	197227	C
SNP	197	3963	1	199973	T
SNP	198	3964	1	200058	C
SNP	199	3965	1	200083	C
SNP	200	3966	1	202687	A
SNP	201	3967	1	203299	A
SNP	202	3968	1	203596	C
SNP	203	3969	1	203736	G
INS	204	3970	1	203792	T
SNP	205	3971	1	203822	A
SNP	206	3973	1	208818	T
SNP	207	3974	1	209771	T
SNP	208	3975	1	211130	C
SNP	209	3976	1	212204	T
SNP	210	3977	1	212244	C
SNP	211	3978	1	213203	G
SNP	212	3979	1	214554	A
SNP	213	3980	1	214835	C
SNP	214	3981	1	216472	T
SNP	215	3982	1	216769	G
SNP	216	3983	1	217052	C
SNP	217	3984	1	217600	A
SNP	218	3985	1	218121	A
SNP	219	3986	1	218652	C
SNP	220	3987	1	218902	C
SNP	221	3988	1	219447	A
SNP	222	3989	1	219991	T
SNP	223	3990	1	220983	G
SNP	224	3991	1	221750	T
SNP	225	3992	1	223107	A
SNP	226	3993	1	224174	T
SUB	227	3996,3997	1	225225	2	AA
SUB	228	3998,3999	1	225246	2	CA
SNP	229	4000	1	225293	A
SNP	230	4001	1	225297	C
SNP	231	4002	1	225350	A
SNP	232	4003	1	226146	A
SNP	233	4004	1	227599	C
SNP	234	4005	1	228495	G
SNP	235	4006	1	228800	G
SNP	236	4007	1	228985	T
SNP	237	4008	1	229234	A
SNP	238	4009	1	231601	G
SNP	239	4010	1	232004	A
SNP	240	4011	1	233492	C
SNP	241	4012	1	236788	G
SNP	242	4013	1	237372	C
SNP	243	4014	1	238232	T
SNP	244	4015	1	240695	G
SNP	245	4016	1	240724	G
SNP	246	4017	1	241007	T
SNP	247	4018	1	241395	C
SNP	248	4019	1	242283	G
SNP	249	4020	1	242450	G
SNP	250	4025	1	244730	T
SNP	251	4026	1	246800	G
SNP	252	4028	1	247684	G
SUB	253	4029,4030	1	247850	2	TC
SNP	254	4031	1	248853	C
SNP	255	4032	1	250320	C
SNP	256	4033	1	252196	G
SNP	257	4034	1	253505	C
SNP	258	4035	1	254337	C
SNP	259	4036	1	254513	C
SNP	260	4037	1	254532	G
SNP	261	4038	1	254709	T
SNP	262	4039	1	258864	A
SNP	263	4040	1	260770	G
SNP	264	4041	1	261020	C
SNP	265	4042	1	261330	G
SNP	266	4043	1	261334	G
SNP	267	4044	1	262131	G
SNP	268	4045	1	262503	C
SNP	269	4046	1	262686	G
SNP	270	4047	1	264853	T
SNP	271	4050	1	265773	C
SNP	272	4051	1	266438	C
SNP	273	4052	1	268892	G
SNP	274	4053	1	268935	C
SNP	275	4054	1	270352	G
SNP	276	4055	1	272984	C
SNP	277	4056	1	273343	T
SNP	278	4057	1	275047	C
SNP	279	4058	1	275976	T
SNP	280	4059	1	276030	C
SNP	281	4060	1	276129	T
SNP	282	4061	1	276670	T
SNP	283	4062	1	277038	G
SNP	284	4063	1	278727	T
SNP	285	4064	1	278899	T
SNP	286	4065	1	282391	G
SNP	287	4066	1	283215	C
SNP	288	4067	1	284334	T
SNP	289	4068	1	285274	A
SNP	290	4069	1	285692	T
SNP	291	4070	1	287860	T
SNP	292	4071	1	290823	C
INS	293	4072	1	291596	A	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=7	repeat_seq=A
SNP	294	4073	1	292133	C
SNP	295	4074	1	292485	C
SNP	296	4075	1	292883	G
SNP	297	4076	1	293132	T
SNP	298	4077	1	294020	T
SNP	299	4078	1	294526	A
SNP	300	4079	1	299798	T
SNP	301	4080	1	300068	G
SNP	302	4081	1	301551	A
SNP	303	4083	1	302175	T
SNP	304	4084	1	304301	T
DEL	305	7922,8003	1	304430	1001
SNP	306	4085	1	305891	A
SNP	307	4086	1	306732	A
INS	308	8004	1	307089	GGGCG	repeat_length=5	repeat_new_copies=3	repeat_ref_copies=2	repeat_seq=GGGCG
SNP	309	4087	1	307364	T
INS	310	8005	1	307509	TTAC
SNP	311	4088	1	309549	C
DEL	312	7923,8006	1	310779	6	repeat_length=6	repeat_new_copies=1	repeat_ref_copies=2	repeat_seq=CGCTGT
SNP	313	4089	1	310798	C
SNP	314	4091	1	312051	T
SNP	315	4092	1	312602	T
SNP	316	4093	1	313145	T
SNP	317	4094	1	314283	C
SNP	318	4095	1	314512	T
SNP	319	4096	1	315974	A
SNP	320	4097	1	320390	C
SNP	321	4098	1	322890	C
SNP	322	4099	1	326152	G
SNP	323	4100	1	327084	C
SNP	324	4101	1	327600	A
SNP	325	4102	1	327734	G
SNP	326	4103	1	329144	C
SNP	327	4104	1	330290	G
SNP	328	4105	1	331479	T
SNP	329	4106	1	331816	T
SNP	330	4107	1	332713	T
SNP	331	4108	1	337276	A
SNP	332	4109	1	338450	G
SNP	333	4110	1	338719	T
SNP	334	4111	1	343716	A
SNP	335	4113	1	356064	T
SNP	336	4114	1	363098	G
SNP	337	4115	1	365918	C
SNP	338	4116	1	366717	C
SNP	339	4117	1	366792	T
SNP	340	4118	1	368053	A
SNP	341	4119	1	373405	T
SNP	342	4120	1	374949	A
SNP	343	4122	1	383475	C
SNP	344	4123	1	383525	A
SNP	345	4124	1	385410	C
SNP	346	4125	1	386052	T
SNP	347	4126	1	388248	T
SNP	348	4127	1	394220	C
SNP	349	4128	1	395805	T
SNP	350	4129	1	396201	G
SNP	351	4130	1	397951	T
SNP	352	4135	1	403798	G
SNP	353	4136	1	405176	A
DEL	354	4137	1	405376	1	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=9	repeat_seq=T
SNP	355	4139	1	408773	T
SNP	356	4140	1	409221	T
SNP	357	4141	1	415076	G
SNP	358	4142	1	418424	G
SNP	359	4148	1	429017	T
SNP	360	4149	1	429305	C
SNP	361	4151	1	429840	A
SNP	362	4152	1	429869	C
SNP	363	4153	1	429910	T
SNP	364	4154	1	430826	C
SNP	365	4155	1	430829	A
SNP	366	4156	1	433793	C
SNP	367	4157	1	434243	G
SNP	368	4158	1	434309	T
SNP	369	4159	1	434471	C
SNP	370	4160	1	435558	C
SNP	371	4161	1	435690	A
SNP	372	4162	1	435856	A
SNP	373	4163	1	437503	G
SNP	374	4164	1	441505	C
SNP	375	4165	1	443672	T
SNP	376	4166	1	444159	T
SNP	377	4167	1	445214	A
SNP	378	4168	1	445252	G
SNP	379	4169	1	448390	G
SNP	380	4170	1	449544	C
SNP	381	4171	1	450585	T
SNP	382	4172	1	452172	T
SNP	383	4173	1	452608	G
DEL	384	4174	1	453072	1	repeat_length=1	repeat_new_copies=5	repeat_ref_copies=6	repeat_seq=T
SNP	385	4175	1	453800	A
SNP	386	4176	1	455400	T
SNP	387	4177	1	455544	G
SNP	388	4178	1	457788	C
SNP	389	4179	1	457911	A
SNP	390	4180	1	459423	A
SNP	391	4181	1	460337	T
SNP	392	4182	1	460749	C
SNP	393	4183	1	461359	C
SNP	394	4184	1	461762	A
SNP	395	4185	1	465357	T
SNP	396	4186	1	466494	G
SNP	397	4187	1	466708	T
SNP	398	4188	1	467563	T
SNP	399	4189	1	468139	G
SNP	400	4190	1	469700	T
SNP	401	4191	1	469773	G
SNP	402	4192	1	470685	G
SNP	403	4193	1	472413	G
SNP	404	4194	1	474606	C
SNP	405	4195	1	476834	T
SNP	406	4196	1	477841	G
SNP	407	4197	1	479151	C
SNP	408	4198	1	481102	G
SNP	409	4199	1	481808	G
SNP	410	4200	1	482207	G
SNP	411	4201	1	482652	G
SNP	412	4202	1	482817	G
SNP	413	4203	1	483847	A
SNP	414	4204	1	484481	A
SNP	415	4205	1	484667	T
SNP	416	4206	1	484675	T
SNP	417	4207	1	484825	G
SNP	418	4208	1	484887	C
SNP	419	4209	1	484975	T
SNP	420	4210	1	485939	A
SNP	421	4211	1	489319	C
SNP	422	4212	1	493778	T
SNP	423	4213	1	495890	T
SNP	424	4214	1	497158	C
SNP	425	4215	1	497371	G
SNP	426	4216	1	498008	A
SNP	427	4217	1	498844	A
SNP	428	4218	1	499971	A
SNP	429	4219	1	501871	C
SNP	430	4220	1	507676	T
SNP	431	4221	1	508961	C
SNP	432	4222	1	513783	G
SNP	433	4223	1	514949	G
SNP	434	4224	1	515422	A
SNP	435	4225	1	516082	T
SNP	436	4226	1	516290	C
SNP	437	4227	1	516770	G
SNP	438	4231	1	517507	T
SNP	439	4232	1	518126	C
DEL	440	7927,8013	1	518662	15	repeat_length=15	repeat_new_copies=2	repeat_ref_copies=3	repeat_seq=TTTTATTGTTCTTCC
SNP	441	4234	1	519267	G
SNP	442	4235	1	519975	T
SNP	443	4236	1	522666	G
SNP	444	4240	1	524065	G
SNP	445	4241	1	524624	G
SNP	446	4242	1	525285	A
SNP	447	4243	1	525484	T
SNP	448	4244	1	528542	G
SNP	449	4245	1	528601	G
SNP	450	4246	1	529589	T
SNP	451	4247	1	529965	C
SNP	452	4248	1	530249	T
SNP	453	4249	1	531234	G
SNP	454	4250	1	533309	C
SNP	455	4251	1	533647	T
SNP	456	4252	1	533778	A
SNP	457	4253	1	534395	G
SNP	458	4254	1	535347	A
SNP	459	4255	1	536499	G
DEL	460	4256	1	536687	1	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=9	repeat_seq=A
SNP	461	4257	1	537554	A
SNP	462	4258	1	538500	A
SNP	463	4259	1	538626	T
SNP	464	4260	1	538663	G
SNP	465	4261	1	538691	A
SNP	466	4262	1	538861	G
SNP	467	4263	1	539602	T
SNP	468	4264	1	541059	G
SNP	469	4265	1	543237	C
SNP	470	4266	1	543480	T
SNP	471	4267	1	544311	T
SNP	472	4268	1	544832	G
SNP	473	4269	1	545039	G
SNP	474	4270	1	546362	T
SNP	475	4271	1	546945	T
SNP	476	4272	1	547301	G
SNP	477	4273	1	548621	C
SNP	478	4274	1	549174	G
SNP	479	4275	1	550373	A
SNP	480	4276	1	552354	T
SNP	481	4277	1	552397	G
SNP	482	4278	1	553106	T
SNP	483	4279	1	553108	C
SNP	484	4280	1	554029	C
SNP	485	4281	1	554550	T
SNP	486	4282	1	555241	G
SNP	487	4283	1	556485	A
SNP	488	4284	1	558008	C
SNP	489	4285	1	558391	T
INS	490	8018	1	559055	GTCTGCAC
SNP	491	4286	1	559809	T
SNP	492	4287	1	561187	G
SNP	493	4288	1	562686	A
SNP	494	4289	1	563213	T
DEL	495	4290	1	564119	1	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=8	repeat_seq=A
SNP	496	4291	1	564724	C
SNP	497	4292	1	565705	C
SNP	498	4293	1	570274	A
SNP	499	4294	1	570731	A
SNP	500	4295	1	570985	T
SNP	501	4296	1	571521	G
SNP	502	4297	1	571746	G
SNP	503	4298	1	571748	T
SNP	504	4299	1	575748	A
SNP	505	4300	1	576947	A
SNP	506	4301	1	577066	G
DEL	507	4302,4303	1	578658	2	repeat_length=1	repeat_new_copies=5	repeat_ref_copies=7	repeat_seq=A
SNP	508	4304	1	578831	T
SNP	509	4305	1	579250	G
SNP	510	4306	1	579542	C
SNP	511	4307	1	579880	C
SNP	512	4308	1	580350	G
SNP	513	4309	1	581261	T
SNP	514	4310	1	581414	A
SNP	515	4311	1	582428	T
SNP	516	4312	1	586840	T
SNP	517	4313	1	587207	A
SNP	518	4314	1	587795	G
SNP	519	4315	1	588072	T
SNP	520	4316	1	590886	A
SNP	521	4317	1	591092	G
SNP	522	4318	1	592002	T
SNP	523	4319	1	592503	T
SNP	524	4320	1	594257	G
SNP	525	4321	1	595037	A
SNP	526	4323	1	596785	C
SNP	527	4324	1	597850	G
SNP	528	4325	1	601962	G
SNP	529	4326	1	601984	C
SNP	530	4327	1	602801	T
SNP	531	4328	1	603205	C
SNP	532	4329	1	603438	T
SNP	533	4330	1	603658	T
SNP	534	4331	1	603661	T
SNP	535	4332	1	603742	T
SNP	536	4333	1	604869	G
SNP	537	4334	1	609262	T
SNP	538	4335	1	610604	T
SNP	539	4336	1	611087	G
SNP	540	4337	1	611267	T
SNP	541	4338	1	611877	C
SNP	542	4339	1	612050	T
SNP	543	4340	1	614240	A
SNP	544	4341	1	615629	G
SNP	545	4342	1	616411	G
INS	546	4343	1	617535	T
SNP	547	4344	1	618805	G
SNP	548	4345	1	619324	T
SNP	549	4346	1	624477	C
SNP	550	4347	1	625719	C
SNP	551	4349	1	625930	C
SNP	552	4350	1	626017	C
SNP	553	4351	1	627198	C
SNP	554	4352	1	627830	C
SNP	555	4353	1	629559	C
SNP	556	4354	1	629609	G
SNP	557	4355	1	630219	T
SNP	558	4356	1	630268	C
SNP	559	4359	1	632728	G
SNP	560	4360	1	634175	A
SNP	561	4361	1	634961	A
SNP	562	4362	1	635321	A
SNP	563	4363	1	635971	A
SNP	564	4364	1	638287	G
SNP	565	4365	1	638669	G
SNP	566	4368	1	639915	G
INS	567	8021	1	640294	GTTAAT
SNP	568	4369	1	642734	A
SNP	569	4370	1	643958	T
SNP	570	4371	1	644112	A
SNP	571	4372	1	645633	A
SNP	572	4373	1	645673	A
SNP	573	4374	1	645748	C
SNP	574	4375	1	646212	A
SNP	575	4376	1	649383	C
SNP	576	4377	1	649813	G
SNP	577	4378	1	650579	A
SNP	578	4379	1	651233	T
SNP	579	4381	1	651306	G
SNP	580	4383	1	651725	T
SNP	581	4384	1	652036	C
SNP	582	4385	1	652520	C
SNP	583	4386	1	652780	T
SNP	584	4387	1	653354	T
SNP	585	4388	1	653674	T
SNP	586	4389	1	653823	T
SNP	587	4390	1	654339	G
SNP	588	4391	1	654629	G
SNP	589	4392	1	655617	C
SNP	590	4393	1	655835	G
SNP	591	4394	1	657938	G
SNP	592	4395	1	659761	T
SNP	593	4396	1	662958	G
SNP	594	4397	1	664239	C
SNP	595	4398	1	664668	T
SNP	596	4399	1	665830	T
SNP	597	4400	1	666383	T
SNP	598	4401	1	668483	C
SNP	599	4402	1	669589	A
INS	600	4403	1	669622	A	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=A
SNP	601	4404	1	670055	G
SNP	602	4405	1	671693	A
SNP	603	4406	1	676381	G
SNP	604	4407	1	676651	T
SNP	605	4408	1	679523	C
SNP	606	4409	1	681507	C
SNP	607	4410	1	681622	G
SNP	608	4411	1	684230	A
SNP	609	4412	1	685352	A
SNP	610	4413	1	685896	G
SNP	611	4414	1	686318	G
SNP	612	4415	1	686721	G
SNP	613	4416	1	687215	A
SNP	614	4417	1	687511	T
SNP	615	4418	1	687656	C
SNP	616	4419	1	689840	C
SNP	617	4420	1	690130	T
SNP	618	4421	1	690891	T
SNP	619	4422	1	690971	G
SNP	620	4423	1	691084	C
SNP	621	4424	1	692366	G
SNP	622	4425	1	692467	T
SNP	623	4426	1	692860	T
SNP	624	4431	1	694330	C
SNP	625	4432	1	694410	A
SNP	626	4433	1	694699	T
SNP	627	4434	1	696396	A
SNP	628	4435	1	697419	T
SNP	629	4436	1	698120	T
SNP	630	4437	1	698289	T
SNP	631	4438	1	698321	T
SNP	632	4439	1	700679	T
SNP	633	4440	1	702338	C
SNP	634	4442	1	702933	G
SNP	635	4443	1	703521	C
SNP	636	4444	1	706064	G
SNP	637	4445	1	706857	G
SNP	638	4446	1	707497	T
SNP	639	4447	1	713355	T
SNP	640	4448	1	713519	C
SNP	641	4449	1	713729	C
SNP	642	4450	1	714493	C
SNP	643	4451	1	716344	C
SNP	644	4452	1	717451	A
SNP	645	4453	1	721616	T
SNP	646	4454	1	721967	T
SNP	647	4455	1	722256	A
SNP	648	4456	1	722935	G
SNP	649	4457	1	723071	G
SNP	650	4458	1	723121	G
SNP	651	4459	1	725708	T
SNP	652	4460	1	726141	T
DEL	653	4461,4462	1	726328	2
SNP	654	4463	1	727969	T
SNP	655	4464	1	728150	T
SNP	656	4465	1	729713	C
SNP	657	4466	1	730123	C
SNP	658	4467	1	730535	T
SNP	659	4468	1	732188	A
SNP	660	4469	1	732814	G
SNP	661	4470	1	733749	C
SNP	662	4471	1	735050	C
SNP	663	4472	1	735315	T
SNP	664	4473	1	735857	G
SNP	665	4474	1	737313	G
SNP	666	4475	1	737530	C
SNP	667	4476	1	737844	C
SNP	668	4477	1	738462	C
SNP	669	4478	1	739563	C
SNP	670	4479	1	739649	A
SNP	671	4480	1	740016	T
SNP	672	4481	1	740090	A
SNP	673	4482	1	742956	A
SNP	674	4483	1	743068	A
SNP	675	4484	1	743381	T
SNP	676	4485	1	744037	A
SNP	677	4486	1	744360	T
SNP	678	4487	1	744667	G
DEL	679	4488	1	744903	1	repeat_length=1	repeat_new_copies=4	repeat_ref_copies=5	repeat_seq=A
SNP	680	4489	1	745455	G
SNP	681	4490	1	746077	T
SNP	682	4491	1	746411	C
SNP	683	4492	1	747206	C
SNP	684	4493	1	747577	C
SNP	685	4495	1	749183	C
SNP	686	4496	1	749352	T
SNP	687	4497	1	749703	T
SNP	688	4498	1	750570	A
SNP	689	4499	1	752425	C
SNP	690	4500	1	752441	C
SNP	691	4501	1	752617	C
SNP	692	4502	1	752626	T
SNP	693	4503	1	754066	G
SNP	694	4504	1	754216	C
SNP	695	4505	1	754545	G
SNP	696	4506	1	755644	C
SNP	697	4507	1	756409	G
INS	698	4508	1	757619	T	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=7	repeat_seq=T
SNP	699	4509	1	757702	T
SNP	700	4510	1	758399	A
SNP	701	4511	1	761419	C
SNP	702	4512	1	763099	C
SNP	703	4513	1	766354	T
SNP	704	4514	1	767380	A
SNP	705	4515	1	768260	T
SNP	706	4516	1	768355	C
SNP	707	4517	1	769473	C
SNP	708	4518	1	769723	T
SNP	709	4519	1	770679	A
SNP	710	4520	1	770921	T
SNP	711	4521	1	771671	C
SNP	712	4522	1	772155	A
SNP	713	4523	1	772240	G
SNP	714	4524	1	774667	A
SNP	715	4525	1	775709	G
SNP	716	4526	1	777338	C
SNP	717	4527	1	778303	T
SNP	718	4528	1	778776	C
SNP	719	4529	1	781648	T
SNP	720	4530	1	782231	A
SNP	721	4531	1	782372	T
SNP	722	4532	1	783728	G
SNP	723	4533	1	785211	A
SNP	724	4534	1	785553	C
SNP	725	4535	1	786250	G
SNP	726	4536	1	787923	C
SNP	727	4537	1	790711	G
SNP	728	4538	1	791359	G
SNP	729	4539	1	792430	C
SNP	730	4540	1	794142	C
INS	731	4541	1	795271	A	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=A
SNP	732	4542	1	795540	G
SNP	733	4543	1	795957	A
SNP	734	4544	1	796692	A
SNP	735	4545	1	797239	G
SNP	736	4546	1	797245	T
SNP	737	4547	1	798439	T
SNP	738	4548	1	798760	C
SNP	739	4549	1	799209	T
SNP	740	4550	1	799263	G
SNP	741	4551	1	799779	C
SNP	742	4552	1	800237	G
SNP	743	4553	1	800531	A
SNP	744	4554	1	802054	C
SNP	745	4555	1	803107	G
SNP	746	4556	1	803348	G
SNP	747	4557	1	803356	A
SNP	748	4558	1	803750	G
SNP	749	4559	1	803818	T
SNP	750	4560	1	804067	C
DEL	751	4561	1	804288	1	repeat_length=1	repeat_new_copies=4	repeat_ref_copies=5	repeat_seq=T
SNP	752	4562	1	805239	G
SNP	753	4563	1	805614	T
INS	754	4564	1	806895	A
DEL	755	4565	1	807030	1
SNP	756	4566	1	808525	T
SNP	757	4567	1	810903	T
SNP	758	4568	1	810945	G
SNP	759	4569	1	811401	A
SNP	760	4570	1	811685	G
SNP	761	4571	1	812514	C
SNP	762	4572	1	813109	G
SNP	763	4573	1	813619	C
SNP	764	4574	1	814674	C
SNP	765	4575	1	818647	C
SNP	766	4576	1	818913	C
SNP	767	4577	1	819874	G
SNP	768	4578	1	821366	G
SNP	769	4579	1	822027	C
SNP	770	4580	1	822285	T
SNP	771	4581	1	822893	G
SNP	772	4582	1	824112	C
SNP	773	4583	1	824229	A
SNP	774	4584	1	824964	G
SNP	775	4585	1	825858	C
SNP	776	4586	1	827230	T
SNP	777	4587	1	827622	G
SNP	778	4591	1	829113	T
SNP	779	4592	1	829411	T
SNP	780	4593	1	829823	C
SNP	781	4594	1	831104	T
SNP	782	4595	1	831349	C
SNP	783	4596	1	831364	G
SNP	784	4597	1	831387	A
SNP	785	4598	1	831824	A
SNP	786	4599	1	831938	G
SNP	787	4600	1	832943	T
SNP	788	4601	1	833075	T
SNP	789	4602	1	833256	T
SNP	790	4603	1	834419	T
SNP	791	4604	1	834916	G
SNP	792	4605	1	836327	A
SNP	793	4606	1	836766	T
SNP	794	4607	1	837258	G
SNP	795	4608	1	837519	C
SNP	796	4609	1	838171	G
SNP	797	4610	1	839961	G
SNP	798	4611	1	841417	A
SNP	799	4612	1	845073	G
SNP	800	4613	1	846000	T
SNP	801	4614	1	847989	T
SNP	802	4615	1	848902	C
SNP	803	4616	1	848959	T
DEL	804	4617	1	852040	1
SNP	805	4618	1	852183	A
SNP	806	4619	1	852351	C
SNP	807	4620	1	852643	G
SNP	808	4621	1	852664	C
SNP	809	4622	1	853890	T
SNP	810	4623	1	853905	G
SNP	811	4624	1	853908	T
SNP	812	4625	1	853920	T
SNP	813	4626	1	853944	T
SNP	814	4627	1	853947	T
SNP	815	4628	1	854001	T
SNP	816	4629	1	854013	A
SNP	817	4630	1	854022	T
SNP	818	4631	1	854055	G
SNP	819	4632	1	854058	A
SNP	820	4633	1	854103	A
SNP	821	4634	1	854113	G
SNP	822	4635	1	854124	C
SNP	823	4636	1	854127	A
SNP	824	4637	1	854142	G
SNP	825	4638	1	854145	C
SNP	826	4639	1	854160	G
SNP	827	4640	1	854211	G
SNP	828	4641	1	854214	C
SNP	829	4642	1	854220	A
SUB	830	4643,4644	1	854257	2	GA
DEL	831	4645	1	854265	1
SNP	832	4646	1	854286	T
SNP	833	4647	1	854310	G
SNP	834	4648	1	854314	A
SNP	835	4649	1	854316	T
SNP	836	4650	1	854379	A
SNP	837	4651	1	854394	C
SNP	838	4652	1	854409	T
SNP	839	4653	1	854427	A
SNP	840	4654	1	854433	T
SNP	841	4655	1	854454	T
SNP	842	4656	1	854466	A
SUB	843	4657,4658	1	854494	2	TC
SNP	844	4659	1	854531	C
SNP	845	4660	1	854544	G
SNP	846	4661	1	854547	T
SNP	847	4662	1	854649	A
SNP	848	4663	1	854707	C
SNP	849	4664	1	854918	C
SNP	850	4665	1	854930	C
SNP	851	4666	1	854939	C
SNP	852	4667	1	854951	T
SNP	853	4668	1	854954	T
SNP	854	4669	1	854960	G
SUB	855	4670,4671	1	854963	2	TT
SNP	856	4672	1	854966	A
SNP	857	4673	1	854972	C
SNP	858	4674	1	854975	A
SNP	859	4675	1	855020	G
SNP	860	4676	1	855051	G
SNP	861	4677	1	855092	T
SNP	862	4678	1	855098	A
SNP	863	4679	1	855128	C
SNP	864	4680	1	855130	G
SNP	865	4681	1	855134	A
SNP	866	4682	1	855155	C
SNP	867	4683	1	855164	T
SNP	868	4684	1	855179	T
SNP	869	4685	1	855188	A
SNP	870	4686	1	855200	T
SNP	871	4687	1	855212	T
SNP	872	4688	1	855224	A
SUB	873	4689,4690	1	855236	2	TC
SNP	874	4691	1	855250	T
DEL	875	4692,4693,4694	1	855269	3
SNP	876	4695	1	855282	C
SUB	877	4696,4697	1	855291	2	TG
SNP	878	4698	1	855300	G
SNP	879	4699	1	855320	C
SNP	880	4700	1	855329	G
SUB	881	4701,4702	1	855332	2	GG
SNP	882	4703	1	855335	A
SNP	883	4704	1	855338	G
SNP	884	4705	1	855341	A
SNP	885	4706	1	855344	G
SNP	886	4707	1	855347	G
SNP	887	4708	1	855351	G
SNP	888	4709	1	855357	T
SUB	889	4710,4711	1	855362	2	TG
SNP	890	4712	1	855365	G
SNP	891	4713	1	855374	G
SNP	892	4714	1	855383	C
SNP	893	4715	1	855443	C
SNP	894	4716	1	855464	C
SNP	895	4717	1	855476	T
SNP	896	4718	1	855482	A
SNP	897	4719	1	855491	C
SNP	898	4720	1	855500	C
SUB	899	4721,4722	1	855503	2	GT
SNP	900	4723	1	855506	G
SNP	901	4724	1	855521	T
SNP	902	4725	1	855533	A
SNP	903	4726	1	855539	G
SNP	904	4727	1	855542	G
SNP	905	4728	1	855557	C
SNP	906	4729	1	855563	C
SNP	907	4730	1	855572	T
SNP	908	4731	1	855575	C
SNP	909	4732	1	855578	C
SNP	910	4733	1	855602	C
SNP	911	4734	1	855605	G
SNP	912	4735	1	855626	C
SNP	913	4736	1	855629	G
SNP	914	4737	1	855671	C
SNP	915	4738	1	855713	T
SNP	916	4739	1	855725	C
SUB	917	4740,4741	1	855728	2	AA
SNP	918	4742	1	855731	C
SNP	919	4743	1	855737	C
SNP	920	4744	1	855745	T
SNP	921	4745	1	855755	C
SNP	922	4746	1	855758	C
SNP	923	4747	1	855761	C
SNP	924	4748	1	855779	A
SNP	925	4749	1	855791	C
SNP	926	4750	1	855794	C
SNP	927	4751	1	855797	C
SNP	928	4752	1	855940	G
SNP	929	4753	1	855970	G
SUB	930	4754,4755,4756,4757	1	856157	4	GCAG
INS	931	4758	1	856165	G
DEL	932	4759	1	856169	1
SNP	933	4760	1	856172	C
SNP	934	4761	1	856181	G
SNP	935	4762	1	856190	G
SNP	936	4763	1	856193	A
SNP	937	4764	1	856199	G
SNP	938	4765	1	856208	C
SNP	939	4766	1	856211	T
SNP	940	4767	1	856214	C
SNP	941	4768	1	856220	T
SNP	942	4769	1	856223	G
SNP	943	4770	1	856229	T
SNP	944	4771	1	856238	G
SNP	945	4772	1	856241	T
SNP	946	4773	1	856250	A
SNP	947	4774	1	856257	C
SNP	948	4779	1	858223	C
SNP	949	4780	1	858846	T
SNP	950	4781	1	860289	A
SNP	951	4782	1	863850	A
SNP	952	4783	1	864566	A
SNP	953	4784	1	864780	T
SNP	954	4785	1	868297	T
SNP	955	4786	1	868367	G
SNP	956	4787	1	868369	T
SNP	957	4788	1	868637	T
SNP	958	4789	1	869352	G
SNP	959	4790	1	869905	T
SNP	960	4791	1	871919	C
SNP	961	4792	1	872414	G
SNP	962	4793	1	873132	C
SNP	963	4794	1	874251	C
SNP	964	4795	1	874755	C
SNP	965	4796	1	875160	G
SNP	966	4797	1	876146	A
SNP	967	4798	1	876420	C
SNP	968	4800	1	876974	A
SNP	969	4801	1	877417	G
SNP	970	4802	1	877484	A
DEL	971	7931,8032	1	877811	68
SNP	972	4803	1	879200	T
SNP	973	4804	1	879707	A
SNP	974	4805	1	880228	C
SNP	975	4806	1	880427	A
SNP	976	4807	1	886199	C
SNP	977	4808	1	888642	T
SNP	978	4809	1	888699	C
INS	979	4810	1	888904	T	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=7	repeat_seq=T
SNP	980	4811	1	890561	C
SNP	981	4812	1	890714	T
SNP	982	4813	1	891624	C
SNP	983	4814	1	891898	G
SNP	984	4815	1	894837	G
SNP	985	4816	1	896335	G
SNP	986	4817	1	898437	T
SNP	987	4818	1	901979	G
SNP	988	4819	1	902457	T
SNP	989	4820	1	905405	A
SNP	990	4821	1	905896	C
SNP	991	4822	1	906838	G
DEL	992	8036	1	907402	4
SNP	993	4823	1	907496	T
SNP	994	4826	1	910204	A
SNP	995	4827	1	910266	T
SNP	996	4828	1	910336	T
SNP	997	4829	1	910338	A
SNP	998	4830	1	910353	A
SNP	999	4831	1	910362	G
SNP	1000	4832	1	910380	C
SNP	1001	4833	1	910389	A
SNP	1002	4834	1	910401	C
SNP	1003	4835	1	910407	T
SNP	1004	4836	1	910413	T
SUB	1005	4837,4838	1	910419	2	GT
SUB	1006	4839,4840	1	910424	2	AG
SNP	1007	4841	1	910428	T
SNP	1008	4842	1	910446	C
SNP	1009	4843	1	910452	C
SNP	1010	4844	1	910461	T
SNP	1011	4845	1	910485	A
SNP	1012	4846	1	910494	A
SNP	1013	4847	1	910497	C
SNP	1014	4848	1	910503	T
SNP	1015	4849	1	910509	G
SNP	1016	4850	1	910788	G
SNP	1017	4851	1	910793	T
SNP	1018	4852	1	910917	A
SNP	1019	4853	1	910931	A
SNP	1020	4854	1	911135	G
SNP	1021	4855	1	911258	A
SNP	1022	4856	1	911281	A
SNP	1023	4857	1	911286	T
SNP	1024	4858	1	911312	A
SNP	1025	4859	1	911314	A
SNP	1026	4860	1	911419	A
SNP	1027	4861	1	911444	C
SNP	1028	4862	1	911448	A
SNP	1029	4863	1	911452	A
SNP	1030	4864	1	911455	A
SNP	1031	4869	1	914108	A
SNP	1032	4870	1	914234	G
SNP	1033	4871	1	914470	C
SNP	1034	4872	1	914628	T
SNP	1035	4873	1	915604	C
SNP	1036	4874	1	915719	T
SNP	1037	4875	1	916497	G
SNP	1038	4876	1	917849	G
SNP	1039	4877	1	919138	G
SNP	1040	4878	1	919141	G
SNP	1041	4879	1	919376	C
SNP	1042	4880	1	920376	G
SNP	1043	4881	1	921208	A
SNP	1044	4882	1	921993	C
SUB	1045	7935,8037	1	923732	419	TTATTATCAGCCAACGCCGTTATAAAAACGACACTTAC
SNP	1046	4883	1	924634	C
SNP	1047	4884	1	924869	A
SNP	1048	4885	1	925658	C
SNP	1049	4886	1	925812	G
SNP	1050	4887	1	925990	C
SNP	1051	4888	1	929370	C
DEL	1052	4889	1	929767	1
SNP	1053	4890	1	929821	A
SNP	1054	4891	1	930652	A
SNP	1055	4892	1	931397	A
SNP	1056	4893	1	931742	A
SNP	1057	4894	1	932723	T
SNP	1058	4895	1	932812	T
SNP	1059	4897	1	933467	G
SNP	1060	4898	1	933490	A
SNP	1061	4899	1	933504	A
SNP	1062	4900	1	933712	C
SNP	1063	4901	1	934444	T
SNP	1064	4902	1	937064	A
SNP	1065	4903	1	938104	T
SNP	1066	4904	1	938363	T
SNP	1067	4905	1	940148	T
SNP	1068	4906	1	940326	G
SNP	1069	4907	1	940406	C
INS	1070	8038	1	941383	CACTGTTGAAATT
SNP	1071	4909	1	944960	T
SNP	1072	4910	1	945015	C
SNP	1073	4911	1	945812	T
SNP	1074	4912	1	946503	C
SNP	1075	4913	1	947437	C
SNP	1076	4914	1	947942	C
SNP	1077	4915	1	948211	A
SNP	1078	4916	1	948598	C
SNP	1079	4917	1	949049	C
SNP	1080	4918	1	951127	A
SNP	1081	4919	1	951229	C
SNP	1082	4920	1	951517	C
INS	1083	8040	1	952131	AGGCGC
SNP	1084	4921	1	952363	A
SNP	1085	4922	1	952430	T
SNP	1086	4923	1	952617	C
SNP	1087	4924	1	956189	T
SNP	1088	4925	1	956257	G
SNP	1089	4926	1	956260	A
SNP	1090	4927	1	956775	C
SNP	1091	4928	1	958891	A
SNP	1092	4929	1	962927	G
SNP	1093	4930	1	963414	G
SNP	1094	4931	1	963757	A
SNP	1095	4932	1	964821	C
SNP	1096	4934	1	966446	T
SNP	1097	4935	1	969328	A
SNP	1098	4936	1	971204	C
SNP	1099	4937	1	971258	C
SNP	1100	4938	1	973250	G
SNP	1101	4939	1	974838	T
SNP	1102	4940	1	975035	T
SNP	1103	4941	1	975356	G
SNP	1104	4942	1	975363	T
SNP	1105	4943	1	976461	T
SNP	1106	4944	1	976578	T
SNP	1107	4945	1	976846	C
SNP	1108	4946	1	976997	T
SNP	1109	4947	1	978845	G
SNP	1110	4948	1	979068	T
SNP	1111	4949	1	980316	A
SNP	1112	4950	1	980355	C
SNP	1113	4951	1	981684	A
SNP	1114	4952	1	981796	G
SNP	1115	4953	1	982618	C
SNP	1116	4954	1	983573	A
SNP	1117	4955	1	983820	C
SNP	1118	4956	1	983852	C
INS	1119	4957,4958	1	983918	CC	repeat_length=1	repeat_new_copies=9	repeat_ref_copies=7	repeat_seq=C
SNP	1120	4959	1	984652	G
SNP	1121	4960	1	986584	T
SNP	1122	4961	1	986914	C
SNP	1123	4962	1	989410	C
SNP	1124	4963	1	991367	C
SNP	1125	4964	1	991626	T
SNP	1126	4965	1	991761	T
SNP	1127	4966	1	991814	T
SNP	1128	4967	1	992086	G
SNP	1129	4968	1	993070	C
SNP	1130	4969	1	995699	T
SNP	1131	4970	1	996804	G
SNP	1132	4971	1	997446	T
SNP	1133	4972	1	999948	G
SNP	1134	4973	1	1000414	C
SNP	1135	4974	1	1001840	T
SUB	1136	4975,4976	1	1003307	2	TC
SNP	1137	4977	1	1003516	A
INS	1138	4978	1	1003624	G
SNP	1139	4979	1	1003979	T
SNP	1140	4980	1	1005083	C
SNP	1141	4981	1	1005262	C
SNP	1142	4982	1	1005973	A
SNP	1143	4983	1	1006782	C
SNP	1144	4984	1	1008810	C
DEL	1145	4985,4986,4987,4988,4989,4990,4991,4992,4993,4994	1	1009341	10	repeat_length=5	repeat_new_copies=5	repeat_ref_copies=7	repeat_seq=TGCCT
INS	1146	8043	1	1009479	CCCAACTTA	repeat_length=9	repeat_new_copies=2	repeat_ref_copies=1	repeat_seq=CCCAACTTA
DEL	1147	7938,8044	1	1010036	641
SNP	1148	4996	1	1010878	G
SNP	1149	4997	1	1012847	A
SNP	1150	4998	1	1013061	A
SNP	1151	4999	1	1013715	T
SUB	1152	7939,8046	1	1013721	332	CATTCTAATGAACATATTTGGT
SNP	1153	5000	1	1014927	C
DEL	1154	7940,8047	1	1016059	849
SNP	1155	5001	1	1022790	A
SNP	1156	5002	1	1024365	G
SNP	1157	5003	1	1025097	G
SNP	1158	5004	1	1026194	A
SNP	1159	5005	1	1027246	C
SNP	1160	5006	1	1027665	G
SNP	1161	5007	1	1027668	G
SNP	1162	5008	1	1027756	G
SNP	1163	5011	1	1031075	C
DEL	1164	7942,8049	1	1031466	11
SNP	1165	5012	1	1031478	T
SNP	1166	5013	1	1031538	A
SNP	1167	5014	1	1031557	T
SNP	1168	5015	1	1031824	T
DEL	1169	5016,5017	1	1032314	2	repeat_length=1	repeat_new_copies=9	repeat_ref_copies=11	repeat_seq=T
SNP	1170	5019	1	1032504	T
SNP	1171	5020	1	1032618	C
DEL	1172	7943,8050	1	1032751	15
SNP	1173	5021	1	1033021	G
SNP	1174	5022	1	1033820	C
SNP	1175	5023	1	1033875	C
SNP	1176	5024	1	1033915	T
SNP	1177	5025	1	1034142	G
SNP	1178	5026	1	1034217	A
INS	1179	5027	1	1034245	G	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=5	repeat_seq=G
SNP	1180	5028	1	1037939	G
SNP	1181	5029	1	1038477	G
SNP	1182	5030	1	1038830	T
SNP	1183	5032	1	1040104	C
SNP	1184	5033	1	1041002	G
SNP	1185	5034	1	1042446	T
SNP	1186	5035	1	1044239	T
SNP	1187	5036	1	1044289	T
SNP	1188	5037	1	1044471	A
SNP	1189	5038	1	1044773	G
SNP	1190	5039	1	1044865	A
SNP	1191	5040	1	1045282	G
SNP	1192	5041	1	1045414	A
SNP	1193	5042	1	1047270	C
SNP	1194	5043	1	1048205	C
SNP	1195	5044	1	1048676	C
DEL	1196	5045	1	1049233	1
SNP	1197	5046	1	1049310	C
SNP	1198	5047	1	1049320	A
SNP	1199	5048	1	1050041	C
SNP	1200	5049	1	1050632	T
SNP	1201	5050	1	1051069	A
SNP	1202	5051	1	1051406	A
SNP	1203	5052	1	1051740	T
SNP	1204	5053	1	1052887	G
SNP	1205	5054	1	1053043	G
SNP	1206	5055	1	1053174	T
SNP	1207	5056	1	1054018	A
SNP	1208	5057	1	1054700	G
SNP	1209	5058	1	1054829	G
DEL	1210	7944,8051	1	1054853	10
SNP	1211	5059	1	1056247	G
SNP	1212	5060	1	1056556	T
SNP	1213	5061	1	1056896	C
SNP	1214	5062	1	1057809	G
SNP	1215	5063	1	1058195	C
SNP	1216	5064	1	1058685	C
SNP	1217	5065	1	1060433	C
SNP	1218	5066	1	1063202	C
SNP	1219	5069	1	1064445	C
SNP	1220	5070	1	1065639	T
SNP	1221	5071	1	1065940	T
SNP	1222	5072	1	1067055	G
SNP	1223	5073	1	1067531	A
SNP	1224	5074	1	1067537	C
INS	1225	5089	1	1070111	T
SUB	1226	5090,5091	1	1070112	2	GA
SUB	1227	5092,5093	1	1070116	2	AA
SUB	1228	5094,5095,5096	1	1070120	2	TCA
SNP	1229	5097	1	1070128	T
SUB	1230	5098,5099	1	1070155	2	CC
SNP	1231	5100	1	1070187	T
SUB	1232	5101,5102,5103,5104	1	1070195	4	TACC
SNP	1233	5105	1	1070200	A
SNP	1234	5106	1	1070202	A
SNP	1235	5107	1	1070250	C
SNP	1236	5108	1	1070305	T
SNP	1237	5109	1	1070308	T
SNP	1238	5110	1	1070368	C
SNP	1239	5111	1	1070372	C
SNP	1240	5112	1	1070382	C
SNP	1241	5113	1	1070416	T
SUB	1242	5114,5115	1	1070422	2	TC
SNP	1243	5116	1	1070429	C
SNP	1244	5117	1	1070433	T
SNP	1245	5118	1	1070437	A
SUB	1246	5119,5120,5121	1	1070440	3	GAA
SNP	1247	5122	1	1070451	A
SNP	1248	5123	1	1070462	A
SNP	1249	5124	1	1070512	A
SNP	1250	5125	1	1071846	T
SNP	1251	5126	1	1072378	C
SNP	1252	5127	1	1072896	C
SNP	1253	5128	1	1074448	C
SNP	1254	5129	1	1074809	G
SNP	1255	5130	1	1075101	C
SNP	1256	5131	1	1075817	T
SNP	1257	5133	1	1076309	G
SNP	1258	5134	1	1076984	T
SNP	1259	5135	1	1077473	T
SNP	1260	5136	1	1078184	A
SNP	1261	5137	1	1078528	A
SNP	1262	5138	1	1079101	T
SNP	1263	5139	1	1080044	C
SNP	1264	5140	1	1080139	G
SNP	1265	5141	1	1081329	G
SNP	1266	5142	1	1082865	T
SNP	1267	5143	1	1083898	G
SNP	1268	5144	1	1085003	T
SNP	1269	5145	1	1085094	A
SNP	1270	5146	1	1085324	C
SNP	1271	5147	1	1087916	A
SNP	1272	5148	1	1087981	T
SNP	1273	5149	1	1088942	A
SNP	1274	5150	1	1089005	G
SNP	1275	5151	1	1089079	T
SNP	1276	5152	1	1089443	C
SNP	1277	5153	1	1090255	G
SNP	1278	5154	1	1090525	G
SNP	1279	5155	1	1090757	C
SNP	1280	5156	1	1090931	T
SNP	1281	5157	1	1091035	G
SNP	1282	5158	1	1091078	T
SNP	1283	5159	1	1092237	T
SNP	1284	5160	1	1092296	G
SNP	1285	5161	1	1093440	C
SNP	1286	5162	1	1094277	T
SNP	1287	5163	1	1094439	T
SNP	1288	5164	1	1096349	G
DEL	1289	5165	1	1096435	1
SNP	1290	5166	1	1097251	A
SNP	1291	5167	1	1098349	T
SNP	1292	5168	1	1100818	G
SNP	1293	5169	1	1103318	C
SNP	1294	5170	1	1103893	C
SNP	1295	5171	1	1105580	T
SNP	1296	5172	1	1106040	A
SNP	1297	5173	1	1106106	C
SNP	1298	5174	1	1106550	C
SNP	1299	5175	1	1107809	T
SNP	1300	5176	1	1108080	A
SNP	1301	5179	1	1108214	A
SNP	1302	5180	1	1109264	T
SNP	1303	5184	1	1111198	A
SNP	1304	5185	1	1111262	C
SNP	1305	5186	1	1111515	T
SNP	1306	5187	1	1111874	A
SNP	1307	5188	1	1111943	A
SNP	1308	5189	1	1112502	C
SNP	1309	5190	1	1113056	A
SNP	1310	5191	1	1113417	A
SNP	1311	5192	1	1114077	A
SNP	1312	5193	1	1114205	G
SNP	1313	5194	1	1114468	A
SNP	1314	5195	1	1115352	T
SNP	1315	5196	1	1115713	G
INS	1316	5197	1	1117327	C	repeat_length=1	repeat_new_copies=9	repeat_ref_copies=8	repeat_seq=C
SNP	1317	5198	1	1117806	T
DEL	1318	5199	1	1118577	1	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=8	repeat_seq=C
SNP	1319	5200	1	1118685	C
SNP	1320	5201	1	1119016	T
SNP	1321	5202	1	1119655	C
SNP	1322	5203	1	1120033	C
SNP	1323	5204	1	1120416	T
SNP	1324	5205	1	1120659	A
SNP	1325	5206	1	1121279	C
SNP	1326	5207	1	1122180	C
SNP	1327	5208	1	1123377	G
SNP	1328	5209	1	1123995	A
SNP	1329	5210	1	1124505	A
DEL	1330	5211	1	1125290	1
SNP	1331	5212	1	1125322	C
INS	1332	8057	1	1125767	GTAACGCCATTTG	repeat_length=13	repeat_new_copies=2	repeat_ref_copies=1	repeat_seq=GTAACGCCATTTG
SNP	1333	5214	1	1127584	T
SNP	1334	5215	1	1127919	G
SNP	1335	5216	1	1128302	T
SNP	1336	5217	1	1131334	T
SNP	1337	5218	1	1131973	C
SNP	1338	5219	1	1132833	G
SNP	1339	5220	1	1133849	T
SNP	1340	5221	1	1134092	A
SNP	1341	5222	1	1134098	T
SNP	1342	5223	1	1134110	T
SUB	1343	5224,5225	1	1134112	2	TA
SNP	1344	5226	1	1134122	G
SNP	1345	5227	1	1134128	A
SNP	1346	5228	1	1134155	G
SNP	1347	5229	1	1134163	A
SNP	1348	5230	1	1134170	C
SNP	1349	5231	1	1134176	C
SNP	1350	5232	1	1134185	T
SNP	1351	5233	1	1134188	T
SNP	1352	5234	1	1134221	T
SNP	1353	5235	1	1134227	A
SNP	1354	5236	1	1134230	T
SNP	1355	5237	1	1134250	T
SNP	1356	5238	1	1134257	G
SNP	1357	5239	1	1134263	A
SNP	1358	5240	1	1134266	T
SNP	1359	5241	1	1134275	A
SNP	1360	5242	1	1134287	T
SNP	1361	5243	1	1134299	G
SNP	1362	5244	1	1134308	T
SNP	1363	5245	1	1134500	T
SUB	1364	5246,5247	1	1134651	2	TT
SNP	1365	5248	1	1134656	T
SNP	1366	5249	1	1134659	A
SNP	1367	5250	1	1134686	A
SNP	1368	5251	1	1134689	C
SNP	1369	5252	1	1134692	A
SNP	1370	5253	1	1134694	A
SNP	1371	5254	1	1135094	C
SNP	1372	5255	1	1135097	C
SUB	1373	5256,5257	1	1135123	2	GC
SNP	1374	5258	1	1135133	C
SNP	1375	5259	1	1135142	A
SNP	1376	5260	1	1135169	T
SNP	1377	5261	1	1135172	C
SNP	1378	5262	1	1135181	T
SNP	1379	5263	1	1135193	T
SNP	1380	5264	1	1135196	A
SNP	1381	5265	1	1135325	A
SNP	1382	5266	1	1135343	A
SNP	1383	5267	1	1135346	G
SUB	1384	5268,5269	1	1135348	2	GC
SNP	1385	5270	1	1135355	A
SNP	1386	5271	1	1135358	A
SNP	1387	5272	1	1135364	T
SNP	1388	5273	1	1135373	A
SNP	1389	5274	1	1135379	C
SNP	1390	5275	1	1135387	T
SUB	1391	5276,5277	1	1135396	2	AT
SNP	1392	5278	1	1135400	A
SUB	1393	5279,5280,5281	1	1135408	3	TTT
SUB	1394	5282,5283	1	1135412	2	TA
SNP	1395	5284	1	1135418	T
SUB	1396	5285,5286,5287,5288	1	1135421	4	TTTT
SNP	1397	5289	1	1135427	G
SNP	1398	5290	1	1135436	A
SUB	1399	5291,5292,5293,5294	1	1135451	4	GGAT
SNP	1400	5295	1	1135463	T
SNP	1401	5296	1	1135472	T
SNP	1402	5297	1	1135484	G
SNP	1403	5298	1	1135487	T
SNP	1404	5299	1	1135492	A
SUB	1405	5300,5301	1	1135495	2	TC
SNP	1406	5302	1	1135499	T
DEL	1407	5303	1	1135511	1
SUB	1408	5304,5305	1	1135514	2	GG
INS	1409	5306	1	1135517	A
SNP	1410	5307	1	1135520	C
SNP	1411	5308	1	1135526	T
SNP	1412	5309	1	1135541	A
SUB	1413	5310,5311,5312	1	1135545	3	CAA
SNP	1414	5313	1	1135562	T
SNP	1415	5314	1	1135577	G
SNP	1416	5315	1	1135583	A
SNP	1417	5316	1	1135586	T
SNP	1418	5317	1	1135592	G
SNP	1419	5318	1	1135595	T
SNP	1420	5319	1	1135597	A
SNP	1421	5320	1	1135667	G
SNP	1422	5321	1	1136095	G
SNP	1423	5322	1	1136125	G
SNP	1424	5323	1	1136134	A
SNP	1425	5324	1	1136140	C
SNP	1426	5325	1	1136143	C
SNP	1427	5326	1	1136173	T
SNP	1428	5327	1	1136230	T
SNP	1429	5328	1	1136239	A
SNP	1430	5329	1	1136242	G
SNP	1431	5330	1	1136257	G
SNP	1432	5331	1	1136272	A
SNP	1433	5332	1	1136301	A
SNP	1434	5333	1	1136465	G
SNP	1435	5334	1	1136488	C
SNP	1436	5335	1	1136494	A
SNP	1437	5336	1	1136515	A
SNP	1438	5337	1	1136535	T
SNP	1439	5338	1	1136593	A
SNP	1440	5339	1	1136601	G
SNP	1441	5340	1	1136623	A
SNP	1442	5341	1	1136640	C
SNP	1443	5342	1	1136654	C
SNP	1444	5343	1	1136667	T
SNP	1445	5344	1	1136689	G
SNP	1446	5345	1	1136693	G
SNP	1447	5346	1	1136723	G
SUB	1448	5347,5348	1	1136728	2	GG
SNP	1449	5349	1	1136761	T
SNP	1450	5350	1	1136800	T
SNP	1451	5351	1	1136812	C
SNP	1452	5352	1	1136833	C
SNP	1453	5353	1	1136854	C
SNP	1454	5354	1	1136856	G
SNP	1455	5355	1	1136875	A
SNP	1456	5356	1	1136896	A
SNP	1457	5357	1	1136899	C
SNP	1458	5358	1	1136902	A
SUB	1459	5359,5360	1	1136904	2	TA
SNP	1460	5361	1	1136908	T
SNP	1461	5362	1	1136911	C
SNP	1462	5363	1	1136914	C
SNP	1463	5364	1	1136920	G
SNP	1464	5365	1	1136929	A
SNP	1465	5366	1	1136937	A
DEL	1466	7946,8059	1	1136980	313
SNP	1467	5367	1	1137328	G
SNP	1468	5368	1	1137337	T
SNP	1469	5369	1	1137367	T
SNP	1470	5370	1	1137397	G
SNP	1471	5371	1	1137435	C
SNP	1472	5372	1	1137496	T
SNP	1473	5373	1	1137508	C
SNP	1474	5374	1	1137529	T
SNP	1475	5375	1	1137562	C
SNP	1476	5376	1	1137574	T
SNP	1477	5377	1	1137886	C
SNP	1478	5378	1	1137895	T
SUB	1479	5379,5380	1	1137906	2	AA
SNP	1480	5381	1	1137913	C
SUB	1481	7947,8060	1	1137919	2455	AA
SNP	1482	5382	1	1140382	A
SNP	1483	5383	1	1140399	A
SNP	1484	5384	1	1140412	T
SNP	1485	5385	1	1140421	C
SNP	1486	5386	1	1140442	C
SNP	1487	5387	1	1140448	A
SNP	1488	5388	1	1140461	A
SNP	1489	5389	1	1140499	T
SNP	1490	5390	1	1140550	C
SNP	1491	5391	1	1140552	T
SNP	1492	5392	1	1140575	C
SNP	1493	5393	1	1140577	G
SNP	1494	5394	1	1140584	C
SNP	1495	5395	1	1140613	T
SNP	1496	5396	1	1140615	G
SNP	1497	5397	1	1140683	G
SNP	1498	5398	1	1140730	A
SNP	1499	5399	1	1140733	A
SNP	1500	5400	1	1140735	T
SNP	1501	5401	1	1140742	G
SNP	1502	5402	1	1140745	G
SNP	1503	5403	1	1140754	T
SUB	1504	5404,5405	1	1140756	2	AT
SNP	1505	5406	1	1140760	C
SNP	1506	5407	1	1140763	C
SNP	1507	5408	1	1140780	T
SNP	1508	5409	1	1140826	T
SNP	1509	5410	1	1140829	G
SNP	1510	5411	1	1140838	C
SNP	1511	5412	1	1140850	G
SNP	1512	5413	1	1140862	G
SNP	1513	5414	1	1140905	A
SNP	1514	5415	1	1140911	G
SNP	1515	5416	1	1140936	A
SNP	1516	5417	1	1140984	A
SNP	1517	5418	1	1141088	G
SNP	1518	5419	1	1141094	T
SUB	1519	5420,5421	1	1141096	2	GA
SNP	1520	5422	1	1141103	T
SNP	1521	5423	1	1141105	T
SNP	1522	5424	1	1141109	C
SNP	1523	5425	1	1141112	T
SNP	1524	5426	1	1141118	G
SUB	1525	5427,5428	1	1141120	2	GT
SNP	1526	5429	1	1141130	A
SNP	1527	5430	1	1141132	T
SNP	1528	5431	1	1141136	C
SNP	1529	5432	1	1141138	A
SNP	1530	5433	1	1141142	A
SNP	1531	5434	1	1141151	G
SNP	1532	5435	1	1141184	C
SNP	1533	5436	1	1141214	A
SNP	1534	5437	1	1141220	G
SNP	1535	5438	1	1141235	C
SNP	1536	5439	1	1141241	T
SNP	1537	5440	1	1141283	G
SNP	1538	5441	1	1141352	A
SNP	1539	5442	1	1141370	T
SNP	1540	5443	1	1141415	G
SNP	1541	5444	1	1141445	C
SNP	1542	5445	1	1141448	G
SNP	1543	5446	1	1141451	T
SNP	1544	5447	1	1141454	G
SNP	1545	5448	1	1141460	G
SNP	1546	5449	1	1141466	A
SNP	1547	5450	1	1141469	T
SNP	1548	5451	1	1141472	G
SNP	1549	5452	1	1141475	T
SNP	1550	5453	1	1141478	T
SNP	1551	5454	1	1141484	T
SNP	1552	5455	1	1141490	T
SNP	1553	5456	1	1141493	T
SNP	1554	5457	1	1141505	C
SNP	1555	5458	1	1141511	A
SNP	1556	5459	1	1141514	A
SNP	1557	5460	1	1141520	T
SNP	1558	5461	1	1141522	A
SNP	1559	5462	1	1141526	A
SNP	1560	5463	1	1141529	G
SNP	1561	5464	1	1141535	C
SNP	1562	5465	1	1141544	T
SNP	1563	5466	1	1141550	A
SUB	1564	5467,5468	1	1141553	2	AC
SNP	1565	5469	1	1141562	T
SNP	1566	5470	1	1141577	A
SNP	1567	5471	1	1141583	A
SNP	1568	5472	1	1141586	T
SNP	1569	5473	1	1141590	G
SNP	1570	5474	1	1141595	T
SNP	1571	5475	1	1141601	C
SNP	1572	5476	1	1141604	G
SNP	1573	5477	1	1141631	G
SNP	1574	5478	1	1141640	T
SNP	1575	5479	1	1141674	T
SNP	1576	5480	1	1141683	A
SNP	1577	5481	1	1141701	A
SNP	1578	5482	1	1141710	A
SNP	1579	5483	1	1141724	A
SNP	1580	5484	1	1141806	T
SNP	1581	5485	1	1141908	C
SNP	1582	5486	1	1141917	G
SNP	1583	5487	1	1141955	G
SNP	1584	5488	1	1141971	G
DEL	1585	8061	1	1143893	4
SNP	1586	5493	1	1145026	G
SNP	1587	5494	1	1145376	A
SNP	1588	5495	1	1145747	C
SNP	1589	5496	1	1146116	A
INS	1590	5497	1	1146468	A
SNP	1591	5498	1	1147673	G
SNP	1592	5499	1	1147693	A
SNP	1593	5500	1	1148190	T
SNP	1594	5501	1	1148824	A
SNP	1595	5502	1	1148917	T
SNP	1596	5503	1	1150382	C
SNP	1597	5504	1	1151519	C
SNP	1598	5505	1	1151535	C
SNP	1599	5506	1	1151540	A
SNP	1600	5507	1	1151628	T
SNP	1601	5508	1	1151679	A
SNP	1602	5509	1	1151703	T
SNP	1603	5510	1	1153470	T
SNP	1604	5511	1	1153497	C
SNP	1605	5512	1	1154248	G
SNP	1606	5513	1	1155198	T
SNP	1607	5514	1	1155292	T
SNP	1608	5515	1	1158079	A
SNP	1609	5518	1	1158600	G
SNP	1610	5519	1	1158762	A
SNP	1611	5520	1	1159377	A
SNP	1612	5521	1	1159946	C
SNP	1613	5522	1	1160838	C
SNP	1614	5523	1	1160884	T
INS	1615	5524	1	1161183	C
SNP	1616	5525	1	1161919	T
SNP	1617	5526	1	1162007	T
SNP	1618	5527	1	1162654	A
SNP	1619	5528	1	1163311	G
SNP	1620	5529	1	1163845	G
SNP	1621	5530	1	1164072	G
SNP	1622	5531	1	1164364	T
SNP	1623	5533	1	1165992	A
SNP	1624	5534	1	1169820	G
SNP	1625	5535	1	1169915	A
SNP	1626	5536	1	1171352	T
SNP	1627	5537	1	1171398	G
SNP	1628	5538	1	1172099	T
SNP	1629	5539	1	1174152	A
SNP	1630	5540	1	1176783	A
SNP	1631	5541	1	1179194	G
SNP	1632	5542	1	1179315	A
SNP	1633	5543	1	1179317	C
SNP	1634	5544	1	1179518	A
SNP	1635	5545	1	1181525	C
SNP	1636	5546	1	1181617	G
SNP	1637	5547	1	1183802	G
DEL	1638	7949,8063	1	1183881	3
SNP	1639	5548	1	1186972	C
SNP	1640	5549	1	1187486	G
SNP	1641	5550	1	1187988	T
SNP	1642	5551	1	1188159	T
SNP	1643	5552	1	1188679	G
SNP	1644	5553	1	1190211	T
SNP	1645	5554	1	1195789	G
SNP	1646	5555	1	1196005	A
SNP	1647	5556	1	1196194	G
SNP	1648	5557	1	1197534	A
SNP	1649	5558	1	1197858	G
SNP	1650	5559	1	1197877	A
SNP	1651	5560	1	1198079	C
DEL	1652	7951,8064	1	1198858	45
SNP	1653	5561	1	1199793	C
SNP	1654	5562	1	1199874	T
SNP	1655	5563	1	1199908	C
SNP	1656	5564	1	1200956	T
SNP	1657	5565	1	1201053	G
SNP	1658	5566	1	1201351	G
SNP	1659	5567	1	1201629	A
SNP	1660	5568	1	1201965	A
SNP	1661	5569	1	1202139	G
SNP	1662	5571	1	1208648	C
SNP	1663	5572	1	1208705	G
SNP	1664	5573	1	1208826	C
SNP	1665	5574	1	1209472	C
SNP	1666	5575	1	1210193	C
SNP	1667	5576	1	1212678	T
SNP	1668	5577	1	1212837	C
SNP	1669	5578	1	1212862	G
SNP	1670	5579	1	1214097	T
SNP	1671	5580	1	1214877	C
SNP	1672	5581	1	1216883	A
SNP	1673	5582	1	1217170	T
SNP	1674	5583	1	1217907	T
SNP	1675	5584	1	1218531	G
SNP	1676	5585	1	1218821	A
SNP	1677	5586	1	1222540	T
SNP	1678	5587	1	1223219	T
SNP	1679	5588	1	1224664	C
SNP	1680	5589	1	1226323	A
SNP	1681	5590	1	1227703	T
SNP	1682	5591	1	1228312	T
SNP	1683	5592	1	1230286	A
SNP	1684	5593	1	1231450	C
SNP	1685	5594	1	1231746	T
SNP	1686	5596	1	1232385	T
SNP	1687	5597	1	1232501	G
SNP	1688	5598	1	1233049	G
SNP	1689	5599	1	1233950	A
SNP	1690	5600	1	1234944	T
SNP	1691	5601	1	1235414	T
SNP	1692	5602	1	1235416	G
SNP	1693	5603	1	1235420	T
SNP	1694	5604	1	1235443	G
SNP	1695	5605	1	1235467	G
SNP	1696	5606	1	1235470	C
SNP	1697	5607	1	1237232	C
SNP	1698	5608	1	1238215	C
SNP	1699	5609	1	1240798	G
SNP	1700	5610	1	1241856	G
SNP	1701	5611	1	1241933	G
SNP	1702	5612	1	1242432	T
SNP	1703	5613	1	1242941	G
SNP	1704	5614	1	1243022	A
SNP	1705	5615	1	1244660	A
SNP	1706	5616	1	1245138	T
SNP	1707	5617	1	1245767	C
SNP	1708	5619	1	1247322	G
SNP	1709	5620	1	1247439	G
SNP	1710	5621	1	1247944	C
SNP	1711	5622	1	1248522	G
SNP	1712	5623	1	1249892	T
SNP	1713	5624	1	1252731	C
SNP	1714	5625	1	1252893	G
SNP	1715	5627	1	1257604	C
SNP	1716	5628	1	1259220	G
SNP	1717	5629	1	1259446	G
SNP	1718	5630	1	1259923	T
SNP	1719	5631	1	1259974	A
SNP	1720	5632	1	1260528	G
SNP	1721	5633	1	1261014	A
SNP	1722	5634	1	1261100	G
SNP	1723	5635	1	1262063	G
SNP	1724	5636	1	1263011	G
SNP	1725	5637	1	1263816	G
SNP	1726	5638	1	1264481	G
SNP	1727	5639	1	1265765	T
SNP	1728	5640	1	1266136	T
SNP	1729	5642	1	1268054	A
SNP	1730	5643	1	1271038	A
SNP	1731	5644	1	1272896	G
SNP	1732	5645	1	1273880	T
SNP	1733	5646	1	1273904	G
SNP	1734	5647	1	1275744	G
SNP	1735	5648	1	1279005	A
SNP	1736	5649	1	1279709	G
SNP	1737	5650	1	1280426	G
SNP	1738	5651	1	1280589	T
SNP	1739	5652	1	1281343	C
SNP	1740	5653	1	1282598	T
SNP	1741	5654	1	1283989	G
SNP	1742	5655	1	1284065	C
SNP	1743	5656	1	1284666	T
SNP	1744	5657	1	1285535	T
SNP	1745	5658	1	1285834	C
SNP	1746	5659	1	1285923	C
SNP	1747	5660	1	1286003	C
SNP	1748	5661	1	1286044	A
INS	1749	5662	1	1288534	T
SNP	1750	5663	1	1289020	G
SNP	1751	5664	1	1290371	T
SNP	1752	5665	1	1291079	G
SNP	1753	5667	1	1294371	C
SNP	1754	5668	1	1297484	T
SNP	1755	5669	1	1297654	G
SNP	1756	5670	1	1298078	T
SNP	1757	5671	1	1298587	G
SNP	1758	5672	1	1298716	C
SUB	1759	5673,5674	1	1304648	2	CT
DEL	1760	5675	1	1304654	1
SUB	1761	5676,5677	1	1304656	2	CC
INS	1762	5678	1	1304659	A
SNP	1763	5679	1	1304661	C
SUB	1764	5680,5681,5682	1	1304669	3	TAC
SNP	1765	5683	1	1306451	G
INS	1766	8076	1	1308643	TTCATCAA	repeat_length=8	repeat_new_copies=2	repeat_ref_copies=1	repeat_seq=TTCATCAA
SNP	1767	5684	1	1308806	T
INS	1768	5685	1	1310079	A	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=A
SNP	1769	5687	1	1310568	A
SNP	1770	5688	1	1311343	G
SNP	1771	5689	1	1311646	G
SNP	1772	5690	1	1312170	A
SNP	1773	5693	1	1315393	C
SNP	1774	5694	1	1316827	G
SNP	1775	5695	1	1319036	A
SNP	1776	5696	1	1319226	T
SNP	1777	5697	1	1319332	C
DEL	1778	5698	1	1320484	1
SNP	1779	5699	1	1320487	T
SNP	1780	5700	1	1320736	G
SNP	1781	5701	1	1323415	A
SNP	1782	5702	1	1323482	A
SNP	1783	5703	1	1324074	C
SNP	1784	5704	1	1324452	T
SNP	1785	5705	1	1326337	T
SNP	1786	5706	1	1326986	T
SNP	1787	5707	1	1329038	T
DEL	1788	7953,8079	1	1329108	377
SNP	1789	5708	1	1329690	T
SNP	1790	5709	1	1332322	T
SNP	1791	5737	1	1335437	T
SNP	1792	5738	1	1335521	A
SNP	1793	5739	1	1335584	T
SNP	1794	5740	1	1335879	C
SNP	1795	5741	1	1336210	G
SNP	1796	5746	1	1338986	C
SNP	1797	5747	1	1339007	T
SNP	1798	5748	1	1339010	A
SNP	1799	5749	1	1339016	G
SUB	1800	5750,5751	1	1339022	2	TC
SNP	1801	5752	1	1339031	A
SNP	1802	5753	1	1339040	G
SNP	1803	5754	1	1339049	G
SNP	1804	5755	1	1339072	G
SNP	1805	5756	1	1339100	C
SNP	1806	5757	1	1339110	C
SNP	1807	5758	1	1339136	C
SNP	1808	5759	1	1339183	C
SNP	1809	5760	1	1339187	A
SNP	1810	5761	1	1339190	C
SNP	1811	5762	1	1339201	T
SNP	1812	5763	1	1339231	C
SNP	1813	5764	1	1339246	G
SNP	1814	5765	1	1339258	G
SNP	1815	5766	1	1339264	C
SNP	1816	5767	1	1339285	T
SNP	1817	5768	1	1339294	A
SNP	1818	5769	1	1339303	C
SNP	1819	5770	1	1339306	T
SNP	1820	5771	1	1339314	C
SNP	1821	5772	1	1339321	T
SUB	1822	5773,5774	1	1339335	2	AG
SNP	1823	5775	1	1339346	T
SNP	1824	5776	1	1339355	A
DEL	1825	5777,5778,5779,5780	1	1339387	4
SNP	1826	5781	1	1339391	A
SUB	1827	5782,5783,5784,5785,5786	1	1339397	5	C
SUB	1828	5787,5788,5789	1	1339404	3	C
DEL	1829	5790,5791	1	1339409	2
SNP	1830	5792	1	1339412	C
SNP	1831	5793	1	1339417	A
SUB	1832	5794,5795	1	1339433	2	CC
SNP	1833	5796	1	1339437	A
SUB	1834	5797,5798	1	1339451	2	AA
SNP	1835	5799	1	1339466	G
SNP	1836	5800	1	1339498	T
SNP	1837	5801	1	1339519	G
SNP	1838	5802	1	1339526	C
SNP	1839	5803	1	1339535	T
SNP	1840	5804	1	1339548	A
SNP	1841	5805	1	1339554	A
SNP	1842	5806	1	1339557	C
SNP	1843	5807	1	1339559	G
SNP	1844	5808	1	1339563	C
SNP	1845	5809	1	1339570	A
SUB	1846	5810,5811	1	1339572	2	CT
SNP	1847	5830	1	1341173	C
SNP	1848	5831	1	1341911	T
SNP	1849	5832	1	1342042	G
SNP	1850	5833	1	1342187	G
SNP	1851	5834	1	1342424	C
SNP	1852	5835	1	1342865	A
SNP	1853	5836	1	1345718	G
SNP	1854	5837	1	1347559	C
SNP	1855	5838	1	1349659	A
SNP	1856	5839	1	1350426	G
SNP	1857	5840	1	1352030	G
SNP	1858	5841	1	1352370	T
SNP	1859	5842	1	1353377	A
SNP	1860	5843	1	1354545	A
SNP	1861	5844	1	1354693	T
SNP	1862	5845	1	1357874	G
SNP	1863	5846	1	1360714	C
SNP	1864	5847	1	1364354	A
SNP	1865	5848	1	1364373	G
SNP	1866	5849	1	1365971	G
SNP	1867	5850	1	1366073	T
INS	1868	8081	1	1368889	CACGAAGTA
SNP	1869	5851	1	1369135	T
SNP	1870	5852	1	1369150	C
SNP	1871	5853	1	1369814	C
SNP	1872	5854	1	1370639	C
SNP	1873	5855	1	1370902	A
SNP	1874	5856	1	1370957	G
SNP	1875	5857	1	1372742	T
SNP	1876	5858	1	1372942	T
SNP	1877	5859	1	1374314	C
SNP	1878	5860	1	1375542	C
SNP	1879	5861	1	1378721	G
SNP	1880	5862	1	1379100	C
INS	1881	5863	1	1379116	G	repeat_length=1	repeat_new_copies=9	repeat_ref_copies=8	repeat_seq=G
SNP	1882	5865	1	1379935	G
SNP	1883	5866	1	1380032	G
SNP	1884	5867	1	1380147	C
SNP	1885	5868	1	1380806	A
SNP	1886	5869	1	1381318	A
SNP	1887	5870	1	1384471	G
SNP	1888	5871	1	1384871	A
SNP	1889	5872	1	1385917	C
SNP	1890	5873	1	1387346	T
SNP	1891	5874	1	1391581	A
DEL	1892	5875	1	1392478	1	repeat_length=1	repeat_new_copies=5	repeat_ref_copies=6	repeat_seq=G
SNP	1893	5876	1	1393726	G
SNP	1894	5877	1	1394843	T
SNP	1895	5878	1	1395368	T
SNP	1896	5879	1	1395448	G
SNP	1897	5880	1	1395647	G
SNP	1898	5881	1	1397498	G
SNP	1899	5882	1	1399307	A
SNP	1900	5883	1	1400108	T
SNP	1901	5884	1	1401664	T
SNP	1902	5885	1	1403050	T
DEL	1903	7957,8082	1	1404358	1865
SNP	1904	5886	1	1407178	G
SNP	1905	5887	1	1408686	A
SNP	1906	5888	1	1410019	T
SNP	1907	5889	1	1410779	T
SNP	1908	5890	1	1410952	A
SNP	1909	5891	1	1413004	T
SNP	1910	5892	1	1413541	T
SNP	1911	5893	1	1413592	G
SNP	1912	5894	1	1413738	C
SNP	1913	5895	1	1416057	C
SNP	1914	5896	1	1416676	C
INS	1915	5897	1	1417992	A
SNP	1916	5898	1	1418196	C
SNP	1917	5899	1	1420271	A
SNP	1918	5900	1	1420483	T
SNP	1919	5901	1	1420584	G
SNP	1920	5902	1	1421960	C
SNP	1921	5903	1	1422354	G
SNP	1922	5904	1	1423466	A
SNP	1923	5905	1	1423932	A
SNP	1924	5906	1	1424513	T
SNP	1925	5907	1	1426031	T
SNP	1926	5908	1	1427522	A
SNP	1927	5909	1	1428153	A
SNP	1928	5910	1	1429326	C
SNP	1929	5913	1	1430138	G
SNP	1930	5914	1	1431219	A
SNP	1931	5915	1	1432681	T
SNP	1932	5916	1	1433102	G
SNP	1933	5917	1	1433295	A
SNP	1934	5918	1	1433897	A
SNP	1935	5919	1	1434157	G
SNP	1936	5920	1	1435561	T
SNP	1937	5921	1	1436365	C
SNP	1938	5922	1	1437564	G
SNP	1939	5923	1	1437906	T
SNP	1940	5924	1	1438254	G
SNP	1941	5925	1	1439413	G
SNP	1942	5926	1	1439495	G
SNP	1943	5927	1	1440803	T
SNP	1944	5928	1	1441127	C
SNP	1945	5929	1	1441483	A
SNP	1946	5930	1	1442320	C
SNP	1947	5931	1	1442686	C
SNP	1948	5932	1	1444202	A
SNP	1949	5933	1	1444652	A
SNP	1950	5934	1	1444912	A
SNP	1951	5935	1	1444949	C
SNP	1952	5936	1	1445032	C
INS	1953	8085	1	1446981	TTTGTTCTC	repeat_length=9	repeat_new_copies=2	repeat_ref_copies=1	repeat_seq=TTTGTTCTC
SNP	1954	5937	1	1446991	A
SNP	1955	5938	1	1447188	C
SNP	1956	5939	1	1447221	C
SNP	1957	5940	1	1447392	G
SNP	1958	5943	1	1450781	A
SNP	1959	5944	1	1451303	C
SNP	1960	5945	1	1454284	G
SNP	1961	5946	1	1454763	A
SNP	1962	5947	1	1454975	A
SNP	1963	5948	1	1455431	T
SNP	1964	5949	1	1455464	C
SNP	1965	5950	1	1455478	T
SNP	1966	5951	1	1456669	G
SNP	1967	5952	1	1460414	G
INS	1968	5953	1	1464167	A	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=A
SNP	1969	5954	1	1466355	A
SNP	1970	5955	1	1466988	A
SNP	1971	5956	1	1467095	C
SNP	1972	5957	1	1467580	G
SNP	1973	5958	1	1470824	A
SNP	1974	5959	1	1471952	T
SNP	1975	5960	1	1472603	G
SNP	1976	5961	1	1472624	A
SNP	1977	5962	1	1472845	G
SNP	1978	5963	1	1473034	C
SNP	1979	5964	1	1473043	C
SNP	1980	5965	1	1473136	A
SNP	1981	5966	1	1473297	C
SNP	1982	5967	1	1473305	T
SUB	1983	5968,5969	1	1473316	2	TT
SNP	1984	5970	1	1473363	A
SNP	1985	5971	1	1473367	A
SNP	1986	5972	1	1473409	G
SNP	1987	5973	1	1473446	A
SNP	1988	5974	1	1473512	G
SNP	1989	5975	1	1473517	A
SNP	1990	5976	1	1473535	A
SNP	1991	5977	1	1473538	A
SNP	1992	5978	1	1473591	A
SNP	1993	5979	1	1473600	C
DEL	1994	5980	1	1473647	1	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=7	repeat_seq=T
SNP	1995	5981	1	1473702	A
SNP	1996	5982	1	1473824	T
SUB	1997	5983,5984	1	1473831	2	TG
SNP	1998	5985	1	1473836	A
SNP	1999	5986	1	1473868	G
SNP	2000	5987	1	1473874	G
SNP	2001	5988	1	1473932	G
SNP	2002	5989	1	1473936	T
SNP	2003	5990	1	1473958	T
SNP	2004	5991	1	1473974	T
SNP	2005	5992	1	1473983	A
SNP	2006	5993	1	1473992	G
SNP	2007	5994	1	1473995	G
SNP	2008	5995	1	1474010	C
SNP	2009	5996	1	1474019	C
SNP	2010	5997	1	1474040	A
SNP	2011	5998	1	1474043	G
SNP	2012	5999	1	1474067	G
SNP	2013	6000	1	1474100	A
SNP	2014	6001	1	1474111	T
SNP	2015	6002	1	1474116	T
INS	2016	6003	1	1474131	A
SNP	2017	6004	1	1474144	T
SNP	2018	6005	1	1474164	A
SUB	2019	6006,6007	1	1474210	2	GC
SNP	2020	6008	1	1474214	A
SNP	2021	6009	1	1474229	T
SNP	2022	6010	1	1474245	A
SNP	2023	6011	1	1474248	C
SNP	2024	6012	1	1474262	C
SNP	2025	6013	1	1474279	T
SNP	2026	6014	1	1474281	T
SNP	2027	6015	1	1474292	C
SNP	2028	6016	1	1474321	A
SNP	2029	6017	1	1474335	T
SNP	2030	6018	1	1474362	A
SNP	2031	6019	1	1474364	C
SUB	2032	6020,6021	1	1474370	2	GG
SNP	2033	6022	1	1474376	C
SNP	2034	6023	1	1474402	C
SNP	2035	6024	1	1474408	G
SNP	2036	6025	1	1474416	T
SNP	2037	6026	1	1474434	T
SNP	2038	6027	1	1474445	A
SNP	2039	6028	1	1474449	G
SNP	2040	6029	1	1474464	T
SNP	2041	6030	1	1474471	C
SNP	2042	6031	1	1474488	C
SNP	2043	6032	1	1474492	T
SNP	2044	6033	1	1474500	T
SNP	2045	6034	1	1474506	A
SNP	2046	6035	1	1474512	C
SNP	2047	6036	1	1474518	C
SNP	2048	6037	1	1474539	C
SNP	2049	6038	1	1474550	T
SNP	2050	6039	1	1474596	G
SNP	2051	6040	1	1474602	T
SNP	2052	6041	1	1474632	A
DEL	2053	6042	1	1474658	1
INS	2054	6043	1	1474660	T
SNP	2055	6044	1	1474683	C
SNP	2056	6045	1	1474686	T
SNP	2057	6046	1	1474704	C
SUB	2058	6047,6048	1	1474730	2	AA
SNP	2059	6049	1	1474794	G
SNP	2060	6050	1	1474797	G
SUB	2061	6051,6052	1	1474800	2	CA
SNP	2062	6053	1	1474803	G
SNP	2063	6054	1	1474818	T
SNP	2064	6055	1	1474826	G
SNP	2065	6056	1	1474839	A
SNP	2066	6057	1	1474842	A
SUB	2067	6058,6059	1	1474845	2	CT
SUB	2068	6060,6061,6062	1	1474852	3	CCT
SNP	2069	6063	1	1474857	T
SNP	2070	6064	1	1474878	G
SNP	2071	6065	1	1474886	G
SUB	2072	6066,6067	1	1474889	2	TT
SNP	2073	6068	1	1474894	C
SNP	2074	6069	1	1474899	T
SNP	2075	6070	1	1474902	T
SNP	2076	6071	1	1474907	A
SNP	2077	6072	1	1474926	T
SNP	2078	6073	1	1474962	G
SNP	2079	6074	1	1474977	A
SNP	2080	6075	1	1475009	T
SNP	2081	6076	1	1475020	C
SNP	2082	6077	1	1475027	T
SNP	2083	6078	1	1475048	C
SNP	2084	6079	1	1475058	A
SNP	2085	6080	1	1475061	G
SNP	2086	6081	1	1475064	A
SNP	2087	6082	1	1475069	A
SNP	2088	6083	1	1475078	G
SNP	2089	6084	1	1475112	G
SNP	2090	6085	1	1475153	G
SNP	2091	6086	1	1475178	A
SNP	2092	6087	1	1475193	G
SUB	2093	6088,6089	1	1475198	2	CT
SNP	2094	6090	1	1475229	A
SNP	2095	6091	1	1475232	C
SNP	2096	6092	1	1475238	A
SNP	2097	6093	1	1475250	C
SNP	2098	6094	1	1475253	G
SNP	2099	6095	1	1475265	G
SNP	2100	6096	1	1475275	A
SNP	2101	6097	1	1475277	G
SUB	2102	6098,6099	1	1475279	2	CA
SNP	2103	6100	1	1475287	G
SNP	2104	6101	1	1475307	G
SNP	2105	6102	1	1475322	A
SUB	2106	6103,6104	1	1475337	2	TA
SNP	2107	6105	1	1475355	C
SNP	2108	6106	1	1475369	T
SNP	2109	6107	1	1475374	C
SNP	2110	6108	1	1475376	A
SNP	2111	6109	1	1475391	C
SUB	2112	6110,6111	1	1475393	2	AT
SNP	2113	6112	1	1475400	C
SUB	2114	6113,6114	1	1475409	2	CG
SNP	2115	6115	1	1475413	G
SNP	2116	6116	1	1475417	C
SNP	2117	6117	1	1475433	A
SNP	2118	6118	1	1475452	A
SNP	2119	6119	1	1475469	A
SNP	2120	6120	1	1475474	G
SUB	2121	6121,6122	1	1475481	2	TT
SNP	2122	6123	1	1475484	C
SNP	2123	6124	1	1475493	C
SNP	2124	6125	1	1475508	T
SNP	2125	6126	1	1475523	G
SNP	2126	6127	1	1475532	A
SNP	2127	6128	1	1475559	T
SUB	2128	6129,6130	1	1475562	2	AC
SNP	2129	6131	1	1475565	G
SNP	2130	6132	1	1475594	T
SNP	2131	6133	1	1475613	A
SNP	2132	6134	1	1475617	A
SNP	2133	6135	1	1475632	G
SNP	2134	6136	1	1475641	C
SNP	2135	6137	1	1475649	G
SNP	2136	6138	1	1475652	C
SNP	2137	6139	1	1475658	G
SNP	2138	6140	1	1475660	G
SNP	2139	6141	1	1475666	G
SNP	2140	6142	1	1475669	A
SNP	2141	6143	1	1475682	A
SNP	2142	6144	1	1475687	C
SUB	2143	6145,6146	1	1475694	2	TT
SNP	2144	6147	1	1475753	C
SNP	2145	6148	1	1475765	A
SNP	2146	6149	1	1475772	A
SNP	2147	6150	1	1475775	A
SNP	2148	6151	1	1475778	A
SUB	2149	6152,6153	1	1475784	2	CA
SNP	2150	6154	1	1475802	A
SNP	2151	6155	1	1475824	A
SNP	2152	6156	1	1475840	G
SNP	2153	6157	1	1475856	G
SNP	2154	6158	1	1475862	A
SNP	2155	6159	1	1475880	C
SNP	2156	6160	1	1475883	A
SNP	2157	6161	1	1475898	A
SNP	2158	6162	1	1475949	G
SNP	2159	6163	1	1475953	G
SNP	2160	6164	1	1475955	C
SNP	2161	6165	1	1475961	A
SUB	2162	6166,6167	1	1475973	2	TG
SNP	2163	6168	1	1475979	G
SNP	2164	6169	1	1475991	T
SNP	2165	6170	1	1476015	A
SNP	2166	6171	1	1476017	G
SNP	2167	6172	1	1476028	T
SNP	2168	6173	1	1476048	A
SUB	2169	6174,6175	1	1476053	2	TG
SNP	2170	6176	1	1476057	A
SNP	2171	6177	1	1476065	A
SUB	2172	6178,6179	1	1476078	2	AG
SNP	2173	6180	1	1476093	T
SNP	2174	6181	1	1476106	G
SNP	2175	6182	1	1476111	A
SNP	2176	6183	1	1476120	A
SNP	2177	6184	1	1476150	A
SNP	2178	6185	1	1476210	A
SNP	2179	6186	1	1476234	C
SNP	2180	6187	1	1476239	T
SNP	2181	6188	1	1476252	G
SNP	2182	6189	1	1476264	A
SNP	2183	6190	1	1476279	A
SNP	2184	6191	1	1476288	A
SNP	2185	6192	1	1476300	G
SNP	2186	6193	1	1476312	A
SNP	2187	6194	1	1476408	C
SNP	2188	6195	1	1476423	G
SNP	2189	6196	1	1476432	T
SNP	2190	6197	1	1476434	G
SNP	2191	6198	1	1476452	C
SUB	2192	6199,6200	1	1476482	2	AG
SNP	2193	6201	1	1476498	A
SUB	2194	6202,6203	1	1476509	2	CG
SNP	2195	6204	1	1476534	C
SNP	2196	6205	1	1476551	A
SNP	2197	6206	1	1476588	T
SNP	2198	6207	1	1476606	C
SNP	2199	6208	1	1476640	G
SNP	2200	6209	1	1476656	T
SNP	2201	6210	1	1476666	A
DEL	2202	6211	1	1476685	1
SNP	2203	6212	1	1476686	G
INS	2204	6213	1	1476690	C
SUB	2205	6214,6215	1	1476698	2	CA
SNP	2206	6216	1	1476702	T
SNP	2207	6217	1	1476729	G
SNP	2208	6218	1	1476732	A
SNP	2209	6219	1	1476761	T
INS	2210	6220	1	1476792	C
SNP	2211	6221	1	1476808	T
SNP	2212	6222	1	1476817	T
SNP	2213	6223	1	1476819	C
SNP	2214	6224	1	1476840	C
SNP	2215	6225	1	1476842	T
SNP	2216	6226	1	1476852	A
SNP	2217	6227	1	1476857	C
DEL	2218	6228,6229,6230,6231,6232	1	1476865	5	repeat_length=5	repeat_new_copies=1	repeat_ref_copies=2	repeat_seq=ATATG
DEL	2219	6233,6234,6235,6236	1	1476875	4
DEL	2220	6237	1	1476882	1
SNP	2221	6238	1	1476887	A
SNP	2222	6239	1	1476917	T
INS	2223	6240	1	1476933	T
SNP	2224	6241	1	1476936	A
SNP	2225	6242	1	1476938	T
SNP	2226	6243	1	1476945	C
SNP	2227	6244	1	1477011	A
SNP	2228	6245	1	1477057	G
SNP	2229	6246	1	1477126	A
SNP	2230	6247	1	1477129	C
SNP	2231	6248	1	1477150	A
SNP	2232	6249	1	1477173	A
SNP	2233	6250	1	1477175	G
SNP	2234	6251	1	1477180	T
SNP	2235	6252	1	1477249	G
SNP	2236	6253	1	1477271	A
SNP	2237	6254	1	1477276	G
SNP	2238	6255	1	1477288	C
SNP	2239	6256	1	1477297	T
SNP	2240	6257	1	1477300	C
SUB	2241	6258,6259	1	1477306	2	AT
SNP	2242	6260	1	1477309	A
SNP	2243	6261	1	1477342	C
SNP	2244	6262	1	1477352	T
SNP	2245	6263	1	1477354	C
SNP	2246	6264	1	1477383	T
SNP	2247	6265	1	1477408	T
SNP	2248	6266	1	1477426	A
SNP	2249	6267	1	1477436	T
SNP	2250	6268	1	1477446	A
SNP	2251	6269	1	1477453	C
SUB	2252	6270,6271	1	1477463	2	CG
SNP	2253	6272	1	1477467	C
SNP	2254	6273	1	1477473	A
SNP	2255	6274	1	1477478	T
SNP	2256	6275	1	1477495	C
SNP	2257	6276	1	1477499	G
SNP	2258	6277	1	1477506	G
SNP	2259	6278	1	1477513	G
SNP	2260	6279	1	1477518	C
SUB	2261	6280,6281	1	1477523	2	AG
SNP	2262	6282	1	1477529	C
SNP	2263	6283	1	1477538	G
SUB	2264	6284,6285	1	1477540	2	TC
DEL	2265	6286	1	1477565	1
SNP	2266	6287	1	1477582	C
SNP	2267	6288	1	1477592	G
SNP	2268	6289	1	1477607	T
SNP	2269	6290	1	1477613	A
SNP	2270	6291	1	1477617	G
SNP	2271	6292	1	1477634	T
SNP	2272	6293	1	1477637	C
SNP	2273	6294	1	1477645	C
SNP	2274	6295	1	1477658	T
SNP	2275	6296	1	1477673	G
SNP	2276	6297	1	1477683	G
SNP	2277	6298	1	1477723	T
DEL	2278	6299	1	1477748	1
INS	2279	6300	1	1477758	T	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=5	repeat_seq=T
SNP	2280	6301	1	1477766	A
SNP	2281	6302	1	1477810	G
INS	2282	6303	1	1477822	A
SNP	2283	6304	1	1477824	A
SNP	2284	6305	1	1477844	T
SUB	2285	6306,6307	1	1477871	2	G
SNP	2286	6308	1	1477921	A
INS	2287	6309	1	1477974	G
SNP	2288	6310	1	1477993	G
SNP	2289	6311	1	1478003	A
INS	2290	6312	1	1478027	A	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=A
DEL	2291	6313	1	1478055	1
SNP	2292	6314	1	1478057	A
SUB	2293	6315,6316	1	1478060	2	GG
SNP	2294	6317	1	1478083	C
SNP	2295	6318	1	1478101	C
SNP	2296	6319	1	1478176	T
SNP	2297	6320	1	1478181	C
SNP	2298	6321	1	1478185	T
SNP	2299	6322	1	1478204	G
SNP	2300	6323	1	1478206	T
SNP	2301	6324	1	1478226	G
SNP	2302	6325	1	1478228	G
SNP	2303	6326	1	1478260	T
SNP	2304	6327	1	1478272	T
SNP	2305	6334	1	1478559	T
SNP	2306	6335	1	1478605	G
SUB	2307	6336,6337	1	1478627	2	AG
SNP	2308	6338	1	1478664	A
DEL	2309	6339	1	1478710	1	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=7	repeat_seq=A
SUB	2310	6340,6341	1	1478727	2	CG
SNP	2311	6342	1	1478737	A
SNP	2312	6343	1	1478746	C
SUB	2313	6344,6345	1	1478750	2	CG
SUB	2314	6346,6347	1	1478758	2	GT
SNP	2315	6348	1	1478770	A
SNP	2316	6349	1	1478786	T
SNP	2317	6350	1	1478791	C
SNP	2318	6351	1	1478806	A
SNP	2319	6352	1	1478808	T
SNP	2320	6353	1	1478860	G
SNP	2321	6354	1	1478901	G
SNP	2322	6355	1	1478917	C
SNP	2323	6356	1	1478965	T
SNP	2324	6357	1	1478982	G
SNP	2325	6358	1	1479058	A
SNP	2326	6359	1	1479154	A
SNP	2327	6360	1	1479265	G
INS	2328	8088	1	1479301	TAA	repeat_length=3	repeat_new_copies=3	repeat_ref_copies=2	repeat_seq=TAA
SUB	2329	6361,6362	1	1479310	2	TC
SNP	2330	6363	1	1479322	A
SNP	2331	6364	1	1479333	G
SNP	2332	6365	1	1479360	A
SNP	2333	6366	1	1479375	G
SNP	2334	6367	1	1479408	C
SNP	2335	6368	1	1479447	G
SNP	2336	6369	1	1479570	T
SNP	2337	6370	1	1479588	T
SNP	2338	6371	1	1479595	T
SUB	2339	6372,6373	1	1479597	2	GA
SNP	2340	6374	1	1479603	A
SNP	2341	6375	1	1479605	G
SNP	2342	6376	1	1479615	C
SNP	2343	6377	1	1479635	G
SNP	2344	6378	1	1479642	C
SNP	2345	6379	1	1479672	C
SUB	2346	6380,6381	1	1479684	2	AT
SNP	2347	6382	1	1479688	G
SNP	2348	6383	1	1479690	T
SNP	2349	6384	1	1479699	G
SUB	2350	6385,6386	1	1479704	2	CC
SNP	2351	6387	1	1479717	C
SNP	2352	6388	1	1479723	T
SNP	2353	6389	1	1479751	G
SNP	2354	6390	1	1479762	G
SNP	2355	6391	1	1479764	C
SNP	2356	6392	1	1479766	G
SNP	2357	6393	1	1479772	C
SNP	2358	6394	1	1479781	C
SNP	2359	6395	1	1479783	G
SNP	2360	6396	1	1479786	T
SNP	2361	6397	1	1479790	G
SUB	2362	6398,6399	1	1479796	2	GT
SNP	2363	6400	1	1479799	G
DEL	2364	6401,6402	1	1479810	2
SUB	2365	6403,6404	1	1479813	2	A
SNP	2366	6405	1	1479820	A
SNP	2367	6406	1	1479825	G
SNP	2368	6407	1	1479828	A
SUB	2369	6408,6409,6410	1	1479831	3	GTT
INS	2370	6411	1	1479835	G
SNP	2371	6412	1	1479836	T
SNP	2372	6413	1	1479838	T
SUB	2373	6414,6415	1	1479841	2	C
SNP	2374	6416	1	1479849	T
SNP	2375	6417	1	1479851	G
SNP	2376	6418	1	1479853	G
SNP	2377	6419	1	1479857	T
SNP	2378	6420	1	1479864	C
SNP	2379	6421	1	1479877	T
SNP	2380	6422	1	1479900	T
SNP	2381	6423	1	1479930	G
SNP	2382	6424	1	1479939	C
SNP	2383	6425	1	1479950	T
SNP	2384	6426	1	1480054	G
SNP	2385	6427	1	1480075	A
SNP	2386	6428	1	1480282	G
SNP	2387	6429	1	1480285	T
SNP	2388	6430	1	1480288	G
SNP	2389	6431	1	1480291	G
SNP	2390	6432	1	1480294	T
SNP	2391	6433	1	1480300	C
SNP	2392	6434	1	1480321	C
SNP	2393	6435	1	1480327	C
SNP	2394	6436	1	1480336	T
SNP	2395	6437	1	1480351	G
SNP	2396	6438	1	1480354	G
SNP	2397	6439	1	1480359	A
SNP	2398	6440	1	1480363	T
SNP	2399	6441	1	1480384	G
SNP	2400	6442	1	1480387	G
SNP	2401	6443	1	1480396	T
SNP	2402	6444	1	1480402	C
SNP	2403	6445	1	1480414	A
SNP	2404	6446	1	1480417	T
SNP	2405	6447	1	1480423	T
SNP	2406	6448	1	1480429	A
SNP	2407	6449	1	1480447	A
SNP	2408	6450	1	1480453	T
SUB	2409	6451,6452	1	1480479	2	AC
SNP	2410	6453	1	1480484	C
SNP	2411	6454	1	1480504	G
SNP	2412	6455	1	1480510	G
SUB	2413	6456,6457	1	1480516	2	TG
SNP	2414	6458	1	1480522	G
SNP	2415	6459	1	1480525	G
SNP	2416	6460	1	1480540	C
SNP	2417	6461	1	1480555	T
SNP	2418	6462	1	1480576	A
SNP	2419	6463	1	1480579	C
SNP	2420	6464	1	1480624	G
SNP	2421	6465	1	1480639	G
SNP	2422	6466	1	1480645	T
SNP	2423	6467	1	1480657	T
SNP	2424	6468	1	1480744	C
SNP	2425	6469	1	1480747	A
SNP	2426	6470	1	1480762	G
SNP	2427	6471	1	1480774	C
SNP	2428	6472	1	1480798	G
SNP	2429	6473	1	1480831	A
SNP	2430	6474	1	1480858	A
SNP	2431	6475	1	1480861	T
SNP	2432	6476	1	1480879	A
SNP	2433	6477	1	1480882	A
SNP	2434	6478	1	1480887	A
SNP	2435	6479	1	1480897	G
SNP	2436	6480	1	1480909	A
SNP	2437	6481	1	1480930	G
SNP	2438	6482	1	1480942	T
SNP	2439	6483	1	1480945	C
SNP	2440	6484	1	1480988	T
SNP	2441	6485	1	1480999	C
SNP	2442	6486	1	1481002	A
SNP	2443	6487	1	1481005	T
SNP	2444	6488	1	1481023	G
SNP	2445	6489	1	1481027	G
SNP	2446	6490	1	1481065	G
SNP	2447	6491	1	1481077	A
SNP	2448	6492	1	1481193	A
SNP	2449	6493	1	1481233	A
SNP	2450	6494	1	1481276	G
SNP	2451	6495	1	1481353	G
SNP	2452	6496	1	1481377	G
SNP	2453	6497	1	1481412	T
SNP	2454	6498	1	1481441	T
SUB	2455	6499,6500	1	1481444	2	TT
SNP	2456	6501	1	1481450	C
SNP	2457	6502	1	1481453	A
SNP	2458	6503	1	1481468	A
SNP	2459	6504	1	1481479	G
SNP	2460	6505	1	1481539	A
SNP	2461	6506	1	1481562	T
SNP	2462	6507	1	1481589	C
SNP	2463	6508	1	1481595	T
SNP	2464	6509	1	1481598	C
SNP	2465	6510	1	1481628	A
SNP	2466	6511	1	1481640	C
SNP	2467	6512	1	1481677	G
SUB	2468	6513,6514	1	1481709	2	CG
SNP	2469	6515	1	1481721	C
SNP	2470	6516	1	1481756	T
SUB	2471	6517,6518	1	1481792	2	AG
SNP	2472	6519	1	1481795	G
SNP	2473	6520	1	1481802	G
SNP	2474	6521	1	1481955	A
SNP	2475	6522	1	1481958	T
SNP	2476	6523	1	1481968	G
SNP	2477	6524	1	1481973	A
SNP	2478	6525	1	1481991	T
SNP	2479	6526	1	1482011	C
SNP	2480	6527	1	1482063	T
SNP	2481	6528	1	1482069	G
SNP	2482	6529	1	1482078	G
SNP	2483	6530	1	1482099	T
SNP	2484	6531	1	1482109	A
SNP	2485	6532	1	1482132	A
SNP	2486	6533	1	1482138	T
SNP	2487	6534	1	1482169	G
SNP	2488	6535	1	1482216	A
SNP	2489	6536	1	1482249	T
SNP	2490	6537	1	1482273	C
SNP	2491	6538	1	1482276	A
SNP	2492	6539	1	1482311	T
SNP	2493	6540	1	1482318	A
SNP	2494	6541	1	1482324	T
SNP	2495	6542	1	1482363	G
SNP	2496	6543	1	1482366	C
SNP	2497	6544	1	1482414	A
SNP	2498	6545	1	1482432	G
SNP	2499	6546	1	1482450	T
SNP	2500	6547	1	1482462	C
SNP	2501	6548	1	1482465	G
SNP	2502	6549	1	1482517	G
SNP	2503	6550	1	1482522	T
SNP	2504	6551	1	1482531	T
SUB	2505	6552,6553	1	1482546	2	CT
SNP	2506	6554	1	1482564	C
SNP	2507	6555	1	1482567	A
SNP	2508	6556	1	1482615	C
SNP	2509	6557	1	1482618	C
SNP	2510	6558	1	1482621	A
SNP	2511	6559	1	1482637	A
SNP	2512	6560	1	1482659	A
SNP	2513	6561	1	1482683	A
SNP	2514	6562	1	1482687	C
SNP	2515	6563	1	1482693	T
SNP	2516	6564	1	1482708	A
SNP	2517	6565	1	1482714	T
SNP	2518	6566	1	1482726	T
SNP	2519	6567	1	1482732	T
SNP	2520	6568	1	1482735	T
SUB	2521	6569,6570	1	1482738	2	CA
SNP	2522	6571	1	1482741	T
SNP	2523	6572	1	1482762	C
SNP	2524	6573	1	1482771	A
SUB	2525	6574,6575	1	1482789	2	GT
SNP	2526	6576	1	1482792	A
SNP	2527	6577	1	1482796	G
SNP	2528	6578	1	1482813	T
SNP	2529	6579	1	1482816	G
SNP	2530	6580	1	1482825	C
SNP	2531	6581	1	1482831	C
SNP	2532	6582	1	1482837	C
SNP	2533	6583	1	1482856	A
SNP	2534	6584	1	1482861	T
SNP	2535	6585	1	1482864	T
SNP	2536	6586	1	1482866	T
SNP	2537	6587	1	1482868	G
SNP	2538	6588	1	1482876	T
SUB	2539	6589,6590	1	1482891	2	TG
SNP	2540	6591	1	1482897	G
SNP	2541	6592	1	1482900	C
SNP	2542	6593	1	1482921	G
SNP	2543	6594	1	1482940	C
SNP	2544	6595	1	1482984	A
SNP	2545	6596	1	1482996	A
SNP	2546	6597	1	1483008	C
SNP	2547	6598	1	1483018	A
SNP	2548	6599	1	1483035	A
SNP	2549	6600	1	1483039	G
SNP	2550	6601	1	1483046	T
SNP	2551	6602	1	1483094	T
SNP	2552	6603	1	1483096	G
SNP	2553	6604	1	1483099	C
SNP	2554	6605	1	1483109	G
SNP	2555	6606	1	1483148	T
SNP	2556	6607	1	1483150	A
SNP	2557	6608	1	1483177	T
SNP	2558	6609	1	1483181	A
SUB	2559	6610,6611,6612,6613,6614	1	1483195	5	TAACA
SNP	2560	6615	1	1483210	G
SNP	2561	6616	1	1483214	T
SNP	2562	6617	1	1483220	G
SNP	2563	6618	1	1483222	A
SNP	2564	6619	1	1483225	G
SNP	2565	6620	1	1483267	T
SNP	2566	6621	1	1483270	G
SNP	2567	6622	1	1483276	G
SNP	2568	6623	1	1483283	G
SNP	2569	6624	1	1483309	C
SNP	2570	6625	1	1483330	T
SNP	2571	6626	1	1483348	C
SNP	2572	6627	1	1483378	C
SNP	2573	6628	1	1483435	T
SNP	2574	6629	1	1483477	C
SNP	2575	6630	1	1483483	T
SNP	2576	6631	1	1483501	A
SNP	2577	6632	1	1483516	G
SNP	2578	6633	1	1483525	T
SNP	2579	6634	1	1483537	C
SNP	2580	6635	1	1483546	G
SNP	2581	6636	1	1483557	G
SUB	2582	6637,6638	1	1483566	2	GC
SNP	2583	6639	1	1483588	C
SNP	2584	6640	1	1483600	C
SNP	2585	6641	1	1483606	T
SNP	2586	6642	1	1483612	A
SNP	2587	6643	1	1483618	T
SNP	2588	6644	1	1483627	C
SNP	2589	6645	1	1483639	T
SNP	2590	6646	1	1483642	A
SNP	2591	6647	1	1483675	C
SUB	2592	6648,6649	1	1483687	2	TC
SNP	2593	6650	1	1483690	C
SNP	2594	6651	1	1483708	T
SNP	2595	6652	1	1483739	T
SNP	2596	6653	1	1483753	T
SUB	2597	6654,6655	1	1483756	2	AT
SNP	2598	6656	1	1483771	A
SNP	2599	6657	1	1483789	T
SNP	2600	6658	1	1483795	A
SNP	2601	6659	1	1483825	G
SNP	2602	6660	1	1483837	G
SNP	2603	6661	1	1483840	T
SNP	2604	6662	1	1483856	C
SNP	2605	6663	1	1483858	A
SNP	2606	6664	1	1483882	C
SNP	2607	6665	1	1483885	A
SNP	2608	6666	1	1483888	T
SNP	2609	6667	1	1483915	G
SNP	2610	6668	1	1483927	G
SNP	2611	6669	1	1483933	C
SNP	2612	6670	1	1483936	T
SNP	2613	6671	1	1483974	C
SNP	2614	6672	1	1483981	G
SNP	2615	6673	1	1483996	A
SNP	2616	6674	1	1484002	G
SNP	2617	6675	1	1484026	G
SNP	2618	6676	1	1484038	G
SNP	2619	6677	1	1484041	A
SUB	2620	6678,6679	1	1484059	2	TG
SNP	2621	6680	1	1484062	A
SNP	2622	6681	1	1484065	T
SNP	2623	6682	1	1484074	T
SNP	2624	6683	1	1484077	C
SNP	2625	6684	1	1484080	C
SNP	2626	6685	1	1484083	A
SNP	2627	6686	1	1484086	A
SNP	2628	6687	1	1484089	C
SUB	2629	6688,6689	1	1484107	2	AA
SNP	2630	6690	1	1484119	C
SNP	2631	6691	1	1484128	T
SUB	2632	6692,6693	1	1484134	2	AA
SNP	2633	6694	1	1484137	A
SNP	2634	6695	1	1484143	T
SNP	2635	6696	1	1484152	T
SNP	2636	6697	1	1484155	G
SNP	2637	6698	1	1484170	A
SNP	2638	6699	1	1484176	T
SNP	2639	6700	1	1484212	T
SNP	2640	6701	1	1484215	C
SNP	2641	6702	1	1484222	A
SNP	2642	6703	1	1484234	G
SNP	2643	6704	1	1484239	C
SNP	2644	6705	1	1484242	T
SUB	2645	6706,6707	1	1484245	2	TT
SNP	2646	6708	1	1484249	T
SNP	2647	6709	1	1484257	C
SNP	2648	6710	1	1484262	C
SNP	2649	6711	1	1484266	T
SNP	2650	6712	1	1484287	T
SNP	2651	6713	1	1484297	A
SUB	2652	6714,6715	1	1484302	2	GT
SNP	2653	6716	1	1484314	T
SNP	2654	6717	1	1484331	G
SUB	2655	6718,6719,6720	1	1484336	3	GCC
SNP	2656	6721	1	1484346	A
SNP	2657	6722	1	1484361	T
SNP	2658	6723	1	1484373	A
SNP	2659	6724	1	1484376	A
SNP	2660	6725	1	1484409	T
SNP	2661	6726	1	1484443	A
SNP	2662	6727	1	1484451	G
SNP	2663	6728	1	1484471	A
SNP	2664	6729	1	1484485	G
SNP	2665	6730	1	1484525	A
SUB	2666	6731,6732	1	1484532	2	AG
SNP	2667	6733	1	1484538	T
SNP	2668	6734	1	1484607	C
SNP	2669	6735	1	1484706	A
SNP	2670	6736	1	1484730	T
SNP	2671	6737	1	1484733	A
SUB	2672	6738,6739	1	1484742	2	TA
SNP	2673	6740	1	1484745	C
SUB	2674	6741,6742	1	1484747	2	TA
SNP	2675	6743	1	1484760	G
SNP	2676	6744	1	1484766	G
SNP	2677	6745	1	1484772	T
SNP	2678	6746	1	1484787	A
SNP	2679	6747	1	1484790	A
SNP	2680	6748	1	1484802	C
SNP	2681	6749	1	1484811	C
SNP	2682	6750	1	1484814	A
SNP	2683	6751	1	1484820	T
SUB	2684	6752,6753	1	1484825	2	GA
SUB	2685	6754,6755	1	1484829	2	CC
SUB	2686	6756,6757	1	1484832	2	CT
SNP	2687	6758	1	1484835	T
SNP	2688	6759	1	1484841	G
SNP	2689	6760	1	1484847	C
SNP	2690	6761	1	1484850	C
SNP	2691	6762	1	1484852	C
SNP	2692	6763	1	1484854	A
SNP	2693	6764	1	1484865	C
SNP	2694	6765	1	1484868	T
SNP	2695	6766	1	1484895	G
SNP	2696	6767	1	1484898	T
SNP	2697	6768	1	1484901	C
SNP	2698	6769	1	1484904	T
SNP	2699	6770	1	1484925	T
SNP	2700	6771	1	1484928	T
SUB	2701	6772,6773	1	1484933	2	AC
SNP	2702	6774	1	1484940	T
SNP	2703	6775	1	1484952	G
SNP	2704	6776	1	1484964	T
SNP	2705	6777	1	1484976	C
SNP	2706	6778	1	1484985	G
SNP	2707	6779	1	1485003	A
SNP	2708	6780	1	1485033	C
SNP	2709	6781	1	1485051	C
SNP	2710	6782	1	1485057	A
SNP	2711	6783	1	1485066	G
SNP	2712	6784	1	1485090	G
SNP	2713	6785	1	1485165	T
SNP	2714	6786	1	1485171	G
SNP	2715	6787	1	1485189	T
SNP	2716	6788	1	1485221	A
SNP	2717	6789	1	1485227	G
SNP	2718	6790	1	1485234	C
SNP	2719	6791	1	1485236	G
SUB	2720	6792,6793	1	1485245	2	AT
SNP	2721	6794	1	1485254	C
SNP	2722	6795	1	1485264	G
SUB	2723	6796,6797	1	1485266	2	GT
SNP	2724	6798	1	1485275	A
SUB	2725	6799,6800,6801	1	1485279	3	TTG
SNP	2726	6802	1	1485293	T
SNP	2727	6803	1	1485298	G
SUB	2728	6804,6805	1	1485308	2	GC
SNP	2729	6806	1	1485314	G
SNP	2730	6807	1	1485317	A
SNP	2731	6808	1	1485321	A
SUB	2732	6809,6810	1	1485351	2	AG
SNP	2733	6811	1	1485355	A
SNP	2734	6812	1	1485359	T
SNP	2735	6813	1	1485363	A
SNP	2736	6814	1	1485368	C
SUB	2737	6815,6816	1	1485372	2	GG
SNP	2738	6817	1	1485377	A
SNP	2739	6818	1	1485383	G
SNP	2740	6819	1	1485401	G
SNP	2741	6820	1	1485404	G
SNP	2742	6821	1	1485410	G
SNP	2743	6822	1	1485416	C
SUB	2744	6823,6824	1	1485425	2	CG
SNP	2745	6825	1	1485428	T
SNP	2746	6826	1	1485435	A
SNP	2747	6827	1	1485437	G
SNP	2748	6828	1	1485440	T
SNP	2749	6829	1	1485516	C
SNP	2750	6830	1	1485520	T
SNP	2751	6831	1	1485533	T
SNP	2752	6832	1	1485539	C
SNP	2753	6833	1	1485576	G
SNP	2754	6834	1	1485587	T
SNP	2755	6835	1	1485593	A
SUB	2756	6836,6837	1	1485596	2	AA
SNP	2757	6838	1	1485617	A
SNP	2758	6839	1	1485621	T
SNP	2759	6840	1	1485623	C
SNP	2760	6841	1	1485653	A
SNP	2761	6842	1	1485656	T
SNP	2762	6843	1	1485681	T
SNP	2763	6844	1	1485689	G
SNP	2764	6845	1	1485692	A
SUB	2765	6846,6847	1	1485695	2	GG
SNP	2766	6848	1	1485704	A
SNP	2767	6849	1	1485707	T
SNP	2768	6850	1	1485710	G
SNP	2769	6851	1	1485716	G
SNP	2770	6852	1	1485719	C
SNP	2771	6853	1	1485739	T
SNP	2772	6854	1	1485746	C
SNP	2773	6855	1	1485755	G
SNP	2774	6856	1	1485788	C
SNP	2775	6857	1	1485791	G
SNP	2776	6858	1	1485797	C
SNP	2777	6859	1	1485806	G
SNP	2778	6860	1	1485809	G
SNP	2779	6861	1	1485815	G
SNP	2780	6862	1	1485843	G
SNP	2781	6863	1	1485845	A
SNP	2782	6864	1	1485852	C
SNP	2783	6865	1	1485854	A
SNP	2784	6866	1	1485863	T
SNP	2785	6867	1	1485875	A
SNP	2786	6868	1	1485881	C
SNP	2787	6869	1	1485884	T
SNP	2788	6870	1	1485912	C
SNP	2789	6871	1	1485915	G
SNP	2790	6872	1	1485920	G
SNP	2791	6873	1	1485953	G
SNP	2792	6874	1	1485968	A
SNP	2793	6875	1	1485977	A
SNP	2794	6876	1	1485983	G
SNP	2795	6877	1	1485996	G
SNP	2796	6878	1	1486043	G
SNP	2797	6879	1	1486052	T
SNP	2798	6880	1	1486104	A
SNP	2799	6881	1	1486146	A
SNP	2800	6882	1	1486203	C
SNP	2801	6883	1	1486272	G
SNP	2802	6884	1	1486316	G
SNP	2803	6885	1	1486332	C
SNP	2804	6886	1	1486356	C
SNP	2805	6887	1	1486373	G
SNP	2806	6888	1	1486381	A
SNP	2807	6889	1	1486393	C
SNP	2808	6890	1	1486410	T
SNP	2809	6891	1	1486416	T
SNP	2810	6892	1	1486464	T
SNP	2811	6893	1	1486473	T
SNP	2812	6894	1	1486479	C
SNP	2813	6895	1	1486497	A
SNP	2814	6896	1	1486500	C
SNP	2815	6897	1	1486506	T
SNP	2816	6898	1	1486515	C
SNP	2817	6899	1	1486521	A
SNP	2818	6900	1	1486530	G
SNP	2819	6901	1	1486542	T
SNP	2820	6902	1	1486545	C
SNP	2821	6903	1	1486551	A
SNP	2822	6904	1	1486554	A
SNP	2823	6905	1	1486557	A
SNP	2824	6906	1	1486563	C
SNP	2825	6907	1	1486569	T
SNP	2826	6908	1	1486575	A
SNP	2827	6909	1	1486578	G
SNP	2828	6910	1	1486581	A
SNP	2829	6911	1	1486587	T
SNP	2830	6912	1	1486591	A
SNP	2831	6913	1	1486593	G
SNP	2832	6914	1	1486609	A
SNP	2833	6915	1	1486611	T
SNP	2834	6916	1	1486614	T
SNP	2835	6917	1	1486632	T
SNP	2836	6918	1	1486641	A
SNP	2837	6919	1	1486647	G
SNP	2838	6920	1	1486665	A
SUB	2839	6921,6922	1	1486683	2	GA
SNP	2840	6923	1	1486696	G
SNP	2841	6924	1	1486708	G
SNP	2842	6925	1	1486713	G
SNP	2843	6926	1	1486719	C
SNP	2844	6927	1	1486722	A
SNP	2845	6928	1	1486764	C
SNP	2846	6929	1	1486770	C
SNP	2847	6930	1	1486783	G
SNP	2848	6931	1	1486791	C
SNP	2849	6932	1	1486797	G
SNP	2850	6933	1	1486812	G
SNP	2851	6934	1	1486817	G
SNP	2852	6935	1	1486825	A
DEL	2853	6936,6937	1	1486837	2	repeat_length=1	repeat_new_copies=5	repeat_ref_copies=7	repeat_seq=A
SNP	2854	6938	1	1486845	G
INS	2855	6939	1	1486848	A
SNP	2856	6940	1	1486851	G
SNP	2857	6941	1	1486865	A
SNP	2858	6942	1	1486871	A
SNP	2859	6943	1	1486880	G
SNP	2860	6944	1	1486884	G
SNP	2861	6945	1	1486913	C
SNP	2862	6946	1	1486923	A
SNP	2863	6947	1	1486932	T
SNP	2864	6948	1	1486949	C
SNP	2865	6949	1	1486964	C
SNP	2866	6950	1	1486970	A
SNP	2867	6951	1	1486973	T
SNP	2868	6952	1	1486979	T
SNP	2869	6953	1	1486982	A
SNP	2870	6954	1	1486985	C
SNP	2871	6955	1	1486988	A
SNP	2872	6956	1	1487003	G
SNP	2873	6957	1	1487006	C
SNP	2874	6958	1	1487015	C
SNP	2875	6959	1	1487021	G
SNP	2876	6960	1	1487024	G
SNP	2877	6961	1	1487027	A
SNP	2878	6962	1	1487033	C
SNP	2879	6963	1	1487042	T
SNP	2880	6964	1	1487044	C
SNP	2881	6965	1	1487054	A
SNP	2882	6966	1	1487072	A
SNP	2883	6967	1	1487076	A
SNP	2884	6968	1	1487088	A
SNP	2885	6969	1	1487090	C
SNP	2886	6970	1	1487097	A
SNP	2887	6971	1	1487102	C
SNP	2888	6972	1	1487108	T
SUB	2889	6973,6974	1	1487135	2	TG
SNP	2890	6975	1	1487138	A
SNP	2891	6976	1	1487174	C
SNP	2892	6977	1	1487181	A
SNP	2893	6978	1	1487186	A
SNP	2894	6979	1	1487195	A
SNP	2895	6980	1	1487203	A
SNP	2896	6981	1	1487210	G
SNP	2897	6982	1	1487212	A
SNP	2898	6983	1	1487219	A
SNP	2899	6984	1	1487225	C
SNP	2900	6985	1	1487229	A
SNP	2901	6986	1	1487237	T
SNP	2902	6987	1	1487256	A
SNP	2903	6988	1	1487276	G
SNP	2904	6989	1	1487285	A
SNP	2905	6990	1	1487294	G
SNP	2906	6991	1	1487300	A
SNP	2907	6992	1	1487304	T
SNP	2908	6993	1	1487312	G
SNP	2909	6994	1	1487329	G
SUB	2910	6995,6996	1	1487335	2	AC
SNP	2911	6997	1	1487340	A
SNP	2912	6998	1	1487343	A
SNP	2913	6999	1	1487348	G
SNP	2914	7000	1	1487375	A
SNP	2915	7001	1	1487579	T
SNP	2916	7002	1	1487600	C
SNP	2917	7003	1	1487613	C
SNP	2918	7004	1	1487630	T
SNP	2919	7005	1	1487636	G
SNP	2920	7006	1	1487639	A
SNP	2921	7007	1	1487657	G
SNP	2922	7008	1	1487660	T
SNP	2923	7009	1	1487673	A
SNP	2924	7010	1	1487681	C
SNP	2925	7011	1	1487684	G
SUB	2926	7012,7013	1	1487693	2	GT
SNP	2927	7014	1	1487713	C
SNP	2928	7015	1	1487715	G
SUB	2929	7016,7017	1	1487718	2	AA
SNP	2930	7018	1	1487735	C
SNP	2931	7019	1	1487789	T
SNP	2932	7020	1	1487836	A
SUB	2933	7021,7022,7023	1	1487844	3	ATG
SNP	2934	7024	1	1487854	A
SNP	2935	7025	1	1487859	G
SNP	2936	7026	1	1487861	C
SNP	2937	7027	1	1487864	A
SNP	2938	7028	1	1487867	T
SNP	2939	7029	1	1487869	G
SNP	2940	7030	1	1487889	G
SNP	2941	7031	1	1487897	A
SNP	2942	7032	1	1487909	G
SNP	2943	7033	1	1487922	T
SNP	2944	7034	1	1487927	T
SNP	2945	7035	1	1487951	C
SNP	2946	7047	1	1489956	A
SNP	2947	7048	1	1489972	G
SNP	2948	7049	1	1490042	A
SNP	2949	7051	1	1490722	G
SNP	2950	7052	1	1492032	C
SNP	2951	7053	1	1492105	C
SNP	2952	7054	1	1492300	C
SNP	2953	7055	1	1492520	A
SNP	2954	7056	1	1492746	G
SNP	2955	7057	1	1494018	A
SNP	2956	7058	1	1494686	A
SNP	2957	7059	1	1495618	A
SNP	2958	7060	1	1496743	G
SNP	2959	7061	1	1498065	A
SNP	2960	7062	1	1499524	T
SNP	2961	7063	1	1503664	G
SNP	2962	7064	1	1504626	C
SNP	2963	7065	1	1506122	C
SNP	2964	7066	1	1506339	A
SNP	2965	7067	1	1506565	G
SNP	2966	7068	1	1506969	G
SNP	2967	7069	1	1507720	T
SNP	2968	7070	1	1508084	A
SNP	2969	7071	1	1509219	A
SNP	2970	7072	1	1509595	C
SNP	2971	7073	1	1509976	C
SNP	2972	7074	1	1512869	A
SNP	2973	7075	1	1513010	G
SNP	2974	7076	1	1513990	G
SNP	2975	7077	1	1514290	T
SNP	2976	7078	1	1515318	T
SNP	2977	7079	1	1515556	G
SNP	2978	7080	1	1517419	C
SNP	2979	7081	1	1517491	C
SNP	2980	7082	1	1517689	C
SNP	2981	7083	1	1518947	T
SNP	2982	7084	1	1519130	T
DEL	2983	7086	1	1520793	1
SNP	2984	7087	1	1523342	C
DEL	2985	7088	1	1524976	1	repeat_length=1	repeat_new_copies=5	repeat_ref_copies=6	repeat_seq=C
DEL	2986	7960,8090	1	1525706	10
SNP	2987	7089	1	1526015	G
INS	2988	7090	1	1529928	T
SNP	2989	7091	1	1530038	C
SNP	2990	7092	1	1532580	C
SNP	2991	7093	1	1533592	A
SNP	2992	7094	1	1534593	C
SNP	2993	7095	1	1535773	G
SNP	2994	7096	1	1536396	A
SNP	2995	7097	1	1536898	G
SNP	2996	7098	1	1537093	G
SNP	2997	7099	1	1537706	T
DEL	2998	7100	1	1537758	1
SNP	2999	7101	1	1538717	G
SNP	3000	7102	1	1541017	A
SNP	3001	7103	1	1541589	G
SNP	3002	7104	1	1541994	T
SNP	3003	7106	1	1545969	A
SNP	3004	7107	1	1546381	T
SNP	3005	7109	1	1546751	C
SNP	3006	7110	1	1547248	T
SNP	3007	7111	1	1548144	T
SNP	3008	7112	1	1548266	A
SNP	3009	7113	1	1548618	G
SNP	3010	7114	1	1549499	A
SNP	3011	7115	1	1550411	G
SNP	3012	7116	1	1551157	G
SNP	3013	7118	1	1552028	C
SNP	3014	7119	1	1552736	A
SNP	3015	7120	1	1552909	A
SNP	3016	7121	1	1557708	C
SNP	3017	7122	1	1558951	C
SNP	3018	7124	1	1566266	A
SNP	3019	7125	1	1567492	A
SNP	3020	7126	1	1567674	G
SNP	3021	7127	1	1567921	C
SNP	3022	7128	1	1568145	A
SNP	3023	7129	1	1569282	G
SNP	3024	7130	1	1569978	A
SNP	3025	7131	1	1570706	A
SNP	3026	7132	1	1570722	C
INS	3027	7133	1	1571051	A
SNP	3028	7134	1	1571513	T
SNP	3029	7135	1	1571539	A
SNP	3030	7136	1	1574772	A
SNP	3031	7137	1	1575334	T
SNP	3032	7138	1	1575695	A
SNP	3033	7139	1	1576852	A
SNP	3034	7140	1	1577645	G
SNP	3035	7141	1	1579017	T
SNP	3036	7142	1	1580742	A
SNP	3037	7143	1	1581101	A
SNP	3038	7144	1	1582668	T
SNP	3039	7145	1	1583353	A
SNP	3040	7146	1	1583793	C
SNP	3041	7147	1	1583895	A
SNP	3042	7148	1	1584024	G
SNP	3043	7149	1	1584254	G
SNP	3044	7150	1	1584744	G
SNP	3045	7151	1	1584781	G
SNP	3046	7152	1	1584994	T
SNP	3047	7153	1	1585675	G
SNP	3048	7154	1	1585883	G
SNP	3049	7156	1	1590012	G
SNP	3050	7157	1	1591462	A
SNP	3051	7158	1	1592066	A
SNP	3052	7159	1	1592204	C
SNP	3053	7160	1	1592236	A
SNP	3054	7161	1	1594428	A
SNP	3055	7162	1	1595011	G
SNP	3056	7163	1	1595076	A
SNP	3057	7164	1	1595349	T
SNP	3058	7165	1	1599403	C
SNP	3059	7166	1	1602310	C
SNP	3060	7168	1	1604582	T
SNP	3061	7169	1	1605248	G
SNP	3062	7170	1	1605931	A
SNP	3063	7171	1	1607258	C
SNP	3064	7172	1	1607811	G
SNP	3065	7173	1	1610410	G
SNP	3066	7174	1	1610476	T
SNP	3067	7175	1	1610989	T
INS	3068	7176	1	1610999	A
SNP	3069	7177	1	1611497	G
SNP	3070	7178	1	1613818	A
SNP	3071	7179	1	1615802	A
SNP	3072	7180	1	1618282	A
SNP	3073	7181	1	1619091	A
SNP	3074	7182	1	1619635	A
SNP	3075	7183	1	1621753	T
SNP	3076	7184	1	1622637	T
SNP	3077	7185	1	1623191	G
SNP	3078	7186	1	1627107	G
SNP	3079	7187	1	1627507	T
SNP	3080	7188	1	1630127	A
SNP	3081	7189	1	1630511	G
SNP	3082	7190	1	1631260	C
SNP	3083	7191	1	1632641	C
SNP	3084	7192	1	1633220	C
SNP	3085	7193	1	1633288	T
SNP	3086	7194	1	1633297	T
SNP	3087	7195	1	1633500	T
INS	3088	7196	1	1634927	A
SNP	3089	7197	1	1640500	A
INS	3090	7198	1	1640614	T	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=T
SNP	3091	7199	1	1640902	C
SNP	3092	7200	1	1641023	C
SNP	3093	7201	1	1643645	T
SNP	3094	7202	1	1645520	A
SNP	3095	7203	1	1646025	A
DEL	3096	7204	1	1647504	1
SNP	3097	7205	1	1647521	T
SNP	3098	7210	1	1648043	C
SNP	3099	7211	1	1648141	A
SNP	3100	7214	1	1652411	C
SNP	3101	7215	1	1652826	A
SNP	3102	7216	1	1656746	G
SNP	3103	7217	1	1656931	C
SNP	3104	7218	1	1656940	G
SNP	3105	7219	1	1660044	A
SNP	3106	7220	1	1661849	G
SNP	3107	7221	1	1661952	T
SNP	3108	7222	1	1662778	G
SNP	3109	7223	1	1663821	G
SNP	3110	7224	1	1664181	A
SNP	3111	7225	1	1664447	C
SNP	3112	7226	1	1664640	C
SNP	3113	7227	1	1665338	G
SNP	3114	7228	1	1665633	G
SNP	3115	7229	1	1666350	T
SNP	3116	7230	1	1667133	C
SNP	3117	7231	1	1668155	G
SNP	3118	7232	1	1668378	C
SNP	3119	7233	1	1670090	A
SNP	3120	7234	1	1670490	C
SNP	3121	7235	1	1670985	T
SNP	3122	7236	1	1672122	G
SNP	3123	7237	1	1672657	C
SNP	3124	7238	1	1673513	A
SNP	3125	7239	1	1676606	A
SNP	3126	7240	1	1678670	A
SNP	3127	7241	1	1679652	G
SNP	3128	7242	1	1681639	T
SNP	3129	7243	1	1681736	T
SNP	3130	7244	1	1682312	C
SNP	3131	7245	1	1682861	T
SNP	3132	7246	1	1683310	G
SNP	3133	7247	1	1684883	C
SNP	3134	7248	1	1685981	A
SNP	3135	7249	1	1687826	C
SNP	3136	7252	1	1690013	G
SNP	3137	7253	1	1690203	T
SNP	3138	7254	1	1690277	G
SNP	3139	7255	1	1690535	G
SNP	3140	7256	1	1690913	C
SNP	3141	7257	1	1692567	A
INS	3142	7258,7259	1	1692635	AC
SNP	3143	7260	1	1692991	T
SNP	3144	7261	1	1693078	T
SNP	3145	7262	1	1693639	A
SNP	3146	7263	1	1694837	G
SNP	3147	7264	1	1694840	G
SNP	3148	7265	1	1694858	A
SNP	3149	7266	1	1694902	G
SNP	3150	7267	1	1694954	G
SNP	3151	7268	1	1694962	C
SNP	3152	7269	1	1694978	T
SNP	3153	7270	1	1694987	A
SNP	3154	7271	1	1694999	G
SNP	3155	7272	1	1695005	G
SNP	3156	7273	1	1695017	G
SNP	3157	7274	1	1695047	G
SNP	3158	7275	1	1695050	T
SNP	3159	7276	1	1695052	G
SNP	3160	7277	1	1695068	G
SNP	3161	7278	1	1695187	A
SNP	3162	7279	1	1695203	C
SNP	3163	7280	1	1695249	A
SNP	3164	7281	1	1695272	T
SNP	3165	7282	1	1695275	C
SNP	3166	7283	1	1695284	T
SNP	3167	7284	1	1695290	A
SNP	3168	7285	1	1695314	C
SNP	3169	7286	1	1695317	G
SNP	3170	7287	1	1695341	A
SNP	3171	7288	1	1695350	T
SNP	3172	7289	1	1695353	A
SNP	3173	7290	1	1695356	G
SNP	3174	7291	1	1695359	A
SNP	3175	7292	1	1695407	C
SNP	3176	7293	1	1695409	A
SNP	3177	7294	1	1695413	C
SNP	3178	7295	1	1695422	A
SNP	3179	7296	1	1695431	A
SNP	3180	7297	1	1695440	C
SNP	3181	7298	1	1695443	A
SNP	3182	7299	1	1695512	A
SUB	3183	7300,7301	1	1695547	2	CA
SNP	3184	7302	1	1695575	A
SNP	3185	7303	1	1695580	G
SUB	3186	7304,7305	1	1695593	2	GC
SUB	3187	7306,7307	1	1695940	2	AA
SNP	3188	7308	1	1696112	A
SNP	3189	7309	1	1696142	T
DEL	3190	7963	10	1	1369
DEL	3191	7964	11	1	1225
SNP	3192	7310	12	48	G
SNP	3193	7311	12	168	C
SNP	3194	7312	12	187	G
SNP	3195	7313	12	229	C
SNP	3196	7314	12	267	G
SNP	3197	7315	12	303	C
SNP	3198	7316	12	313	G
DEL	3199	7965	13	1	414
DEL	3200	7966	14	1	192
DEL	3201	7967	16	1	105
SNP	3202	7317	2	125	T
SNP	3203	7318	2	597	A
SNP	3204	7319	2	2608	C
SNP	3205	7320	2	2920	C
SNP	3206	7321	2	2959	C
SNP	3207	7324	2	3492	A
SNP	3208	7325	2	4626	C
SNP	3209	7326	2	5826	T
SNP	3210	7327	2	7299	C
SNP	3211	7328	2	7999	C
SNP	3212	7332	2	9035	G
SNP	3213	7333	2	9364	A
SNP	3214	7334	2	9586	A
SNP	3215	7335	2	9662	A
SNP	3216	7336	2	13196	A
SNP	3217	7337	2	14470	T
SNP	3218	7338	2	14628	G
SNP	3219	7339	2	15348	T
SNP	3220	7340	2	15375	G
SNP	3221	7341	2	17034	G
SNP	3222	7342	2	17036	C
SNP	3223	7343	2	17805	T
SNP	3224	7344	2	19002	C
SNP	3225	7345	2	20763	A
SNP	3226	7346	2	21392	G
SNP	3227	7347	2	21757	C
SNP	3228	7348	2	21814	T
SNP	3229	7349	2	22289	G
SNP	3230	7350	2	24261	G
SNP	3231	7351	2	24558	A
SNP	3232	7352	2	27288	G
SNP	3233	7353	2	27305	C
SNP	3234	7354	2	27735	C
SNP	3235	7355	2	27914	G
SNP	3236	7356	2	30458	C
SNP	3237	7357	2	31701	T
SNP	3238	7358	2	32359	G
SNP	3239	7359	2	33770	T
SNP	3240	7360	2	35415	C
SNP	3241	7361	2	35471	G
SNP	3242	7362	2	35494	A
INS	3243	7363	2	35523	T	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=T
SNP	3244	7364	2	35543	T
SNP	3245	7365	2	36466	G
SNP	3246	7368	2	38744	G
SNP	3247	7369	2	39346	T
SNP	3248	7370	2	39703	T
SNP	3249	7371	2	40624	A
SNP	3250	7372	2	40903	G
DEL	3251	7373	2	41479	1
SNP	3252	7374	2	42479	A
SNP	3253	7375	2	42517	A
SNP	3254	7376	2	42654	A
SNP	3255	7377	2	44064	C
SNP	3256	7378	2	45632	A
SNP	3257	7379	2	46091	G
SNP	3258	7380	2	46566	G
SNP	3259	7381	2	47264	T
DEL	3260	7382	2	47843	1
INS	3261	8111	2	47976	AAAAT	repeat_length=5	repeat_new_copies=2	repeat_ref_copies=1	repeat_seq=AAAAT
SNP	3262	7383	2	50525	G
SNP	3263	7385	2	52912	G
SNP	3264	7386	2	53487	T
SNP	3265	7387	2	54220	T
SNP	3266	7388	2	55679	G
SNP	3267	7389	2	56424	C
SNP	3268	7390	2	57178	C
INS	3269	7391	2	58387	A
SNP	3270	7392	2	58819	A
SNP	3271	7393	2	59364	T
INS	3272	7394	2	59516	A	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=5	repeat_seq=A
SNP	3273	7395	2	60290	G
SNP	3274	7396	2	62599	T
SNP	3275	7397	2	67083	G
SNP	3276	7398	2	71135	C
SNP	3277	7399	2	71183	G
SNP	3278	7402	2	74497	A
SNP	3279	7403	2	75316	C
SNP	3280	7404	2	75889	G
SNP	3281	7405	2	76056	C
SNP	3282	7406	2	76177	T
SNP	3283	7407	2	76875	C
SNP	3284	7408	2	77219	T
SNP	3285	7409	2	77788	G
SNP	3286	7410	2	78404	T
SNP	3287	7411	2	78573	G
SNP	3288	7412	2	79668	G
SNP	3289	7413	2	81226	C
SNP	3290	7414	2	81584	C
SNP	3291	7415	2	83262	G
SNP	3292	7416	2	83768	A
SNP	3293	7417	2	83925	A
SNP	3294	7418	2	84565	G
SNP	3295	7419	2	84656	C
DEL	3296	7968,8112	2	84961	4
SNP	3297	7420	2	84998	C
SNP	3298	7421	2	85055	C
SNP	3299	7422	2	86305	C
SNP	3300	7423	2	86552	T
SNP	3301	7424	2	88828	G
SNP	3302	7425	2	88980	A
SNP	3303	7426	2	89065	T
SNP	3304	7427	2	89178	G
SNP	3305	7428	2	89898	G
SNP	3306	7429	2	90436	T
SNP	3307	7430	2	91465	T
SNP	3308	7431	2	92347	A
SNP	3309	7432	2	93348	G
SNP	3310	7433	2	93376	T
SNP	3311	7434	2	93653	G
SNP	3312	7435	2	93920	G
SNP	3313	7440	2	95714	A
SNP	3314	7442	2	95929	A
SNP	3315	7443	2	96148	T
SNP	3316	7444	2	98148	G
SNP	3317	7445	2	98644	C
SNP	3318	7446	2	101641	C
SNP	3319	7447	2	102370	G
SNP	3320	7448	2	102584	G
SNP	3321	7449	2	102735	C
SNP	3322	7454	2	107189	T
SNP	3323	7455	2	107317	A
SNP	3324	7457	2	108705	A
SNP	3325	7458	2	108925	A
SNP	3326	7459	2	109192	G
SNP	3327	7461	2	109697	G
SNP	3328	7462	2	110358	G
SNP	3329	7463	2	111277	A
SNP	3330	7464	2	111625	C
SNP	3331	7466	2	112461	C
SNP	3332	7467	2	113150	A
SNP	3333	7468	2	113470	C
SNP	3334	7469	2	114063	C
SNP	3335	7470	2	115889	C
SNP	3336	7471	2	116618	T
SNP	3337	7472	2	117446	G
SNP	3338	7473	2	117491	C
SNP	3339	7474	2	117581	C
SNP	3340	7475	2	117611	G
SNP	3341	7476	2	119060	G
SNP	3342	7477	2	119254	C
SNP	3343	7478	2	119436	C
SNP	3344	7479	2	119604	T
SNP	3345	7480	2	120270	G
SNP	3346	7481	2	120670	A
SNP	3347	7482	2	121409	A
SNP	3348	7483	2	121809	C
SNP	3349	7484	2	122767	T
SNP	3350	7485	2	123238	C
SNP	3351	7486	2	123532	G
SNP	3352	7487	2	124396	A
SNP	3353	7488	2	124456	A
SNP	3354	7489	2	124839	G
SNP	3355	7490	2	125093	C
SNP	3356	7491	2	126753	A
SNP	3357	7492	2	127283	T
SNP	3358	7493	2	127376	G
SNP	3359	7494	2	127434	T
SNP	3360	7495	2	129118	C
SNP	3361	7496	2	129713	G
SNP	3362	7497	2	131108	C
SNP	3363	7498	2	131666	G
SNP	3364	7499	2	131798	G
INS	3365	7500	2	132269	T	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=T
SNP	3366	7501	2	132279	C
SNP	3367	7502	2	132481	A
SNP	3368	7503	2	133320	C
SNP	3369	7505	2	133441	C
SNP	3370	7506	2	133615	A
SNP	3371	7507	2	133981	A
SNP	3372	7508	2	134038	C
SNP	3373	7509	2	134756	T
SNP	3374	7510	2	134870	A
SNP	3375	7511	2	134963	C
SNP	3376	7512	2	139005	T
SNP	3377	7513	2	139178	G
SNP	3378	7514	2	139222	T
SNP	3379	7515	2	139477	G
SNP	3380	7516	2	140160	G
SNP	3381	7517	2	140387	C
SNP	3382	7518	2	140469	G
SNP	3383	7519	2	142193	T
SNP	3384	7520	2	142632	G
SNP	3385	7521	2	143028	G
SNP	3386	7522	2	144413	G
SNP	3387	7523	2	144778	C
SNP	3388	7524	2	146168	T
SNP	3389	7525	2	146255	A
SNP	3390	7526	2	146716	A
SNP	3391	7527	2	146784	T
DEL	3392	7528	2	147609	1
SNP	3393	7529	2	147875	G
SNP	3394	7530	2	147942	T
SNP	3395	7531	2	148214	C
SNP	3396	7532	2	148561	C
SNP	3397	7533	2	148632	G
SNP	3398	7534	2	149326	A
SNP	3399	7535	2	149469	C
SNP	3400	7536	2	149568	C
SNP	3401	7537	2	149962	C
SNP	3402	7538	2	150017	C
SNP	3403	7539	2	151679	T
SNP	3404	7540	2	151938	T
SNP	3405	7541	2	154199	C
SNP	3406	7542	2	154390	G
SNP	3407	7543	2	154899	C
SNP	3408	7544	2	154903	A
DEL	3409	7969,8116	2	155102	9084
SNP	3410	7545	2	164297	G
SNP	3411	7546	2	164301	T
SNP	3412	7547	2	164321	C
SUB	3413	7548,7549	2	164326	2	AG
SNP	3414	7550	2	164344	T
SNP	3415	7551	2	164346	A
SNP	3416	7552	2	164351	G
SNP	3417	7553	2	164360	T
SUB	3418	7554,7555	2	164366	2	CA
SNP	3419	7556	2	164385	A
SUB	3420	7557,7558	2	164387	2	CA
SNP	3421	7559	2	164390	G
SNP	3422	7560	2	164408	T
SNP	3423	7561	2	164518	A
DEL	3424	7562	2	164542	1	repeat_length=1	repeat_new_copies=5	repeat_ref_copies=6	repeat_seq=A
SNP	3425	7563	2	164549	A
SNP	3426	7564	2	164551	A
SNP	3427	7565	2	164559	C
SNP	3428	7566	2	164574	A
SNP	3429	7567	2	164597	T
DEL	3430	7568	2	164892	1	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=7	repeat_seq=T
DEL	3431	7970,8117	2	165144	1609
SNP	3432	7569	2	170260	T
SUB	3433	7971,8118	2	170265	45	TGAATCAACCGGTTGCTTCTTTTTCCGGCGGCGAAAAAGCGCGTCTGGTGCTGGCGCTCATCGTGTGGCAACGCCCGAATT
SNP	3434	7570	2	171266	G
SNP	3435	7571	2	171677	C
SNP	3436	7572	2	173306	C
SNP	3437	7573	2	174215	A
SNP	3438	7574	2	175222	T
SNP	3439	7575	3	121	C
SNP	3440	7576	3	269	A
SNP	3441	7577	3	894	C
SNP	3442	7578	3	1712	G
SNP	3443	7579	3	8256	C
SNP	3444	7580	3	9186	C
SNP	3445	7582	3	12017	C
SNP	3446	7583	3	12403	T
SNP	3447	7585	3	13491	C
SNP	3448	7586	3	14078	T
SNP	3449	7587	3	14316	A
SNP	3450	7588	3	14554	T
SNP	3451	7589	3	15053	T
SNP	3452	7590	3	19428	C
SNP	3453	7591	3	19657	T
DEL	3454	7594	3	20606	1
SNP	3455	7595	3	20609	G
SNP	3456	7596	3	20615	T
SNP	3457	7597	3	20623	C
SNP	3458	7600	3	21430	A
SNP	3459	7601	3	22458	C
SNP	3460	7602	3	22461	A
SNP	3461	7603	3	23166	A
SNP	3462	7604	3	23300	A
SNP	3463	7605	3	23370	T
SNP	3464	7606	3	24166	C
SNP	3465	7607	3	24372	C
SNP	3466	7608	3	25114	T
SNP	3467	7609	3	25524	G
SNP	3468	7610	3	26843	A
SNP	3469	7611	3	30670	G
SNP	3470	7612	3	31180	C
SNP	3471	7613	3	32075	C
SNP	3472	7614	3	34504	T
SNP	3473	7615	3	37672	C
SNP	3474	7616	3	38883	A
SNP	3475	7617	3	39051	G
SNP	3476	7618	3	40390	G
SNP	3477	7619	3	43599	A
SNP	3478	7620	3	43848	A
SNP	3479	7621	3	43884	A
SNP	3480	7622	3	45731	G
SNP	3481	7623	3	48023	A
SNP	3482	7624	3	48514	C
SNP	3483	7625	3	49765	G
SNP	3484	7626	3	50227	G
SNP	3485	7627	3	50712	G
SNP	3486	7628	3	51731	G
SNP	3487	7629	3	53246	C
SNP	3488	7630	3	54300	A
SNP	3489	7631	3	55482	A
SNP	3490	7632	3	55573	G
SNP	3491	7633	3	55674	C
SNP	3492	7634	3	58525	T
SNP	3493	7635	3	59133	G
SNP	3494	7636	3	59528	T
INS	3495	7637	3	61750	G
SNP	3496	7638	3	62387	C
SNP	3497	7639	3	63469	T
SNP	3498	7640	3	64191	G
SNP	3499	7641	3	64825	G
SNP	3500	7642	3	64905	G
SNP	3501	7643	3	65004	A
SNP	3502	7644	3	65208	A
SNP	3503	7645	3	65652	G
SNP	3504	7646	3	68085	A
SNP	3505	7647	3	68776	A
SNP	3506	7648	3	70778	T
SNP	3507	7649	3	71711	A
SNP	3508	7650	3	72919	G
SNP	3509	7654	3	73561	G
SNP	3510	7655	3	75660	A
SNP	3511	7656	3	78901	G
DEL	3512	7973,8122	3	79033	19
SNP	3513	7657	3	80451	G
SNP	3514	7658	3	80887	T
SNP	3515	7659	3	82004	T
DEL	3516	7660	3	82540	1	repeat_length=1	repeat_new_copies=5	repeat_ref_copies=6	repeat_seq=A
SNP	3517	7661	3	86395	T
SNP	3518	7662	3	88062	T
SNP	3519	7665	3	89822	A
SNP	3520	7666	3	91789	A
SNP	3521	7667	3	93230	A
INS	3522	8125	3	94977	ATT
SNP	3523	7668	3	95748	A
SNP	3524	7669	3	96363	G
DEL	3525	7975,8126	3	97283	63
SNP	3526	7670	3	97998	A
SNP	3527	7671	3	98090	T
SNP	3528	7672	3	100178	A
SNP	3529	7673	3	101257	T
SNP	3530	7674	3	102039	A
SNP	3531	7675	3	102201	A
SNP	3532	7676	4	257	G
SNP	3533	7677	4	271	G
SNP	3534	7678	4	304	A
SNP	3535	7679	4	323	A
SNP	3536	7680	4	376	T
SNP	3537	7681	4	380	G
SUB	3538	7682,7683	4	499	2	TG
SNP	3539	7684	4	529	T
SNP	3540	7685	4	635	A
SNP	3541	7686	4	638	A
SNP	3542	7687	4	1236	A
SNP	3543	7688	4	1557	G
SNP	3544	7689	4	1587	C
SNP	3545	7690	4	2201	A
SNP	3546	7691	4	2295	T
SNP	3547	7692	4	2952	G
SNP	3548	7693	4	3209	A
SNP	3549	7694	4	3406	C
SNP	3550	7695	4	3410	C
SNP	3551	7696	4	3454	A
SNP	3552	7697	4	3466	C
SNP	3553	7698	4	3469	T
SNP	3554	7699	4	3496	G
SNP	3555	7700	4	3517	C
SNP	3556	7701	4	3589	C
SNP	3557	7702	4	3616	C
SNP	3558	7703	4	3628	T
SNP	3559	7704	4	3631	A
SNP	3560	7705	4	3637	G
SNP	3561	7706	4	3641	T
INS	3562	7707	4	3671	A
SUB	3563	7708,7709	4	3675	2	AA
SNP	3564	7710	4	3742	C
SNP	3565	7711	4	3775	A
SNP	3566	7712	4	3928	G
SNP	3567	7713	4	4015	T
SNP	3568	7714	4	4061	T
SNP	3569	7715	4	4102	A
SNP	3570	7716	4	4132	C
SUB	3571	7717,7718	4	4142	2	AT
SNP	3572	7719	4	4157	C
SNP	3573	7720	4	4159	A
SUB	3574	7721,7722	4	4165	2	AT
SNP	3575	7723	4	4168	A
SNP	3576	7724	4	4171	G
SNP	3577	7725	4	4183	C
SNP	3578	7726	4	4200	G
SNP	3579	7727	4	4357	C
SNP	3580	7728	4	4431	T
SNP	3581	7729	4	4474	T
SNP	3582	7730	4	4515	C
SNP	3583	7731	4	4519	C
SNP	3584	7732	4	4618	C
SNP	3585	7733	4	4672	G
SNP	3586	7734	4	4743	T
SNP	3587	7735	4	4798	C
SNP	3588	7736	4	4902	T
SNP	3589	7737	4	4917	C
SNP	3590	7738	4	4950	C
SNP	3591	7739	4	5110	A
SNP	3592	7740	4	5240	T
SNP	3593	7741	4	5255	A
SNP	3594	7742	4	5284	A
SNP	3595	7743	4	5308	C
SNP	3596	7744	4	5386	T
SNP	3597	7745	4	5434	G
SNP	3598	7746	4	5568	A
SNP	3599	7747	4	5618	C
SUB	3600	7748,7749	4	5668	2	GC
SNP	3601	7750	4	5671	G
SNP	3602	7751	4	5689	T
SNP	3603	7752	4	5848	C
SNP	3604	7753	4	5851	G
SNP	3605	7754	4	6126	G
SNP	3606	7755	4	6136	G
SNP	3607	7756	4	6166	C
SNP	3608	7757	4	6181	G
SNP	3609	7758	4	6232	T
SNP	3610	7759	4	6238	T
SNP	3611	7760	4	6241	C
SUB	3612	7761,7762	4	6250	2	TG
SNP	3613	7763	4	6424	G
SNP	3614	7764	4	6506	T
SNP	3615	7765	4	6542	C
SNP	3616	7766	4	6702	G
SNP	3617	7767	4	6772	G
SNP	3618	7768	4	7070	G
SNP	3619	7769	4	7081	C
SNP	3620	7770	4	7085	A
SNP	3621	7771	4	7089	G
SNP	3622	7772	4	7091	G
SNP	3623	7773	4	7097	T
SNP	3624	7774	4	7100	T
SNP	3625	7775	4	7106	C
SNP	3626	7776	4	7124	C
SNP	3627	7777	4	7769	G
SNP	3628	7778	4	8383	C
SNP	3629	7779	4	8616	T
SNP	3630	7780	4	8916	T
SNP	3631	7781	4	9374	C
SNP	3632	7782	4	9701	G
SNP	3633	7784	4	10616	T
SNP	3634	7785	4	10771	C
SNP	3635	7786	4	11691	G
SNP	3636	7787	4	12460	T
SNP	3637	7788	4	13057	T
SNP	3638	7789	4	13796	T
DEL	3639	7790	4	14011	1
SNP	3640	7791	4	14018	G
SNP	3641	7792	4	14053	T
SNP	3642	7793	4	14085	A
SNP	3643	7794	4	14229	T
SNP	3644	7795	4	15154	C
SNP	3645	7796	4	15413	G
SNP	3646	7797	4	16189	C
SNP	3647	7798	4	16609	A
SNP	3648	7799	4	16941	C
SNP	3649	7800	4	17406	G
SNP	3650	7801	4	17617	T
SNP	3651	7802	4	18680	T
SNP	3652	7803	4	19666	G
SNP	3653	7804	4	19680	G
SNP	3654	7805	4	20493	T
SNP	3655	7806	4	22776	A
SNP	3656	7807	4	22857	G
DEL	3657	7808	4	23302	1	repeat_length=1	repeat_new_copies=4	repeat_ref_copies=5	repeat_seq=G
SNP	3658	7809	4	25128	C
DEL	3659	7976,8127	4	25236	3	repeat_length=3	repeat_new_copies=1	repeat_ref_copies=2	repeat_seq=TTA
SNP	3660	7810	4	30576	G
SNP	3661	7811	4	32243	C
SNP	3662	7812	4	32375	G
SNP	3663	7813	4	32614	A
SNP	3664	7814	4	33493	C
SNP	3665	7815	4	36135	A
SNP	3666	7816	4	36756	T
SNP	3667	7817	4	36978	G
SNP	3668	7818	4	37762	T
SNP	3669	7819	4	38142	C
SNP	3670	7820	4	38349	A
SNP	3671	7821	4	40883	G
SNP	3672	7822	4	41795	A
SNP	3673	7823	4	42398	A
SNP	3674	7824	4	43391	A
SNP	3675	7826	4	46447	T
SNP	3676	7829	5	733	C
SNP	3677	7830	5	1154	G
SNP	3678	7831	5	1331	C
SNP	3679	7832	5	1594	C
SNP	3680	7833	5	2225	T
DEL	3681	7979,8129	5	2583	1329
SNP	3682	7834	5	4090	G
SNP	3683	7835	5	4191	A
SNP	3684	7836	5	4636	G
SNP	3685	7837	5	5420	G
SNP	3686	7838	5	7498	C
SNP	3687	7839	5	7889	G
SNP	3688	7840	5	11197	T
SNP	3689	7841	5	13274	A
SNP	3690	7842	5	13714	T
SNP	3691	7843	5	14069	C
SNP	3692	7844	5	15914	C
SNP	3693	7845	5	16941	C
SNP	3694	7846	5	18431	C
SNP	3695	7849	5	22110	A
INS	3696	7850	5	22354	T
SNP	3697	7851	5	22822	G
DEL	3698	7980,8131	5	23050	393
SNP	3699	7852	5	23996	A
SNP	3700	7853	5	24288	T
SNP	3701	7854	5	24971	C
SNP	3702	7855	5	25077	G
SNP	3703	7856	5	27126	T
SNP	3704	7857	5	27411	G
SNP	3705	7858	5	27845	C
SNP	3706	7859	5	27992	G
SNP	3707	7860	5	28623	T
SNP	3708	7865	5	29354	T
SNP	3709	7866	5	29602	C
SNP	3710	7867	5	29714	A
SNP	3711	7868	5	30688	T
SNP	3712	7869	5	31648	A
SNP	3713	7870	5	32988	A
DEL	3714	8132	5	33786	3	repeat_length=3	repeat_new_copies=2	repeat_ref_copies=3	repeat_seq=TTG
SNP	3715	7872	5	34675	A
INS	3716	7873	5	34745	T	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=T
SNP	3717	7876	5	35806	A
SNP	3718	7877	5	36513	C
SNP	3719	7878	5	37353	A
SNP	3720	7879	6	417	T
SNP	3721	7881	6	1684	G
SNP	3722	7882	6	2192	C
SNP	3723	7883	6	4050	T
SNP	3724	7884	6	4645	A
SNP	3725	7885	6	5527	A
SNP	3726	7886	6	5911	G
SNP	3727	7887	6	10383	A
SNP	3728	7888	6	11703	G
SNP	3729	7889	6	12974	C
SNP	3730	7890	6	14212	C
SNP	3731	7892	6	14972	C
SNP	3732	7896	6	15313	C
SNP	3733	7897	6	15445	T
SNP	3734	7898	6	15488	T
SNP	3735	7899	6	15691	A
SNP	3736	7900	6	15850	G
SNP	3737	7901	6	16314	T
SNP	3738	7902	6	17373	T
SNP	3739	7903	6	17730	C
SNP	3740	7904	6	19259	G
SNP	3741	7905	6	22280	C
SNP	3742	7906	6	22297	G
SNP	3743	7907	6	22846	A
SNP	3744	7908	6	23513	A
SNP	3745	7909	6	24595	T
SNP	3746	7910	6	25159	C
SNP	3747	7911	6	25202	A
SNP	3748	7912	6	28271	C
SNP	3749	7913	6	30120	T
DEL	3750	7981	7	1	2132
DEL	3751	7982	8	1	1637
RA	3752	.	1	662	0	C	T	consensus_score=210.1	frequency=1	major_base=T	major_cov=47/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/32
RA	3753	.	1	683	0	C	T	consensus_score=275.4	frequency=1	major_base=T	major_cov=61/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/41
RA	3754	.	1	2782	0	G	A	consensus_score=233.1	frequency=1	major_base=A	major_cov=47/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/39
RA	3755	.	1	4971	0	C	T	consensus_score=344.2	frequency=1	major_base=T	major_cov=57/69	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/69	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/69
RA	3756	.	1	6348	0	A	G	consensus_score=298.0	frequency=1	major_base=G	major_cov=53/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/54
RA	3757	.	1	7533	0	G	A	consensus_score=246.0	frequency=1	major_base=A	major_cov=48/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/43
RA	3758	.	1	8371	0	A	G	consensus_score=201.6	frequency=1	major_base=G	major_cov=30/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/43
RA	3759	.	1	9947	0	T	C	consensus_score=322.4	frequency=1	major_base=C	major_cov=53/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/58
RA	3760	.	1	10676	0	G	T	consensus_score=263.1	frequency=1	major_base=T	major_cov=51/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/46
RA	3761	.	1	11924	0	A	C	consensus_score=287.4	frequency=1	major_base=C	major_cov=59/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/45
RA	3762	.	1	12551	0	C	T	consensus_score=322.6	frequency=1	major_base=T	major_cov=65/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/48
RA	3763	.	1	13772	0	C	A	bias_e_value=3.60498e-06	bias_p_value=1.71416e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=207.3	fisher_strand_p_value=5.43428e-14	frequency=2.170e-01	ks_quality_p_value=1	major_base=C	major_cov=14/69	major_frequency=7.830e-01	minor_base=A	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.170e-01	polymorphism_score=17.0	prediction=polymorphism	ref_cov=14/69	total_cov=37/69
RA	3764	.	1	14717	0	T	C	consensus_score=340.7	frequency=1	major_base=C	major_cov=60/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/57
RA	3765	.	1	14868	0	T	G	consensus_score=386.4	frequency=1	major_base=G	major_cov=56/79	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/79	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/79
RA	3766	.	1	16619	0	C	T	consensus_score=232.6	frequency=1	major_base=T	major_cov=39/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/46
RA	3767	.	1	17459	0	C	T	consensus_score=304.2	frequency=1	major_base=T	major_cov=46/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/66
RA	3768	.	1	18064	0	G	A	bias_e_value=2092170	bias_p_value=0.994825	consensus_score=253.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.900008	major_base=A	major_cov=67/24	major_frequency=9.891e-01	minor_base=.	minor_cov=1/0	new_cov=67/24	polymorphism_frequency=9.891e-01	polymorphism_score=-3.5	prediction=consensus	ref_cov=0/0	total_cov=68/24
RA	3769	.	1	18236	0	G	T	consensus_score=213.9	frequency=1	major_base=T	major_cov=65/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/12
RA	3770	.	1	19497	0	G	A	consensus_score=276.5	frequency=1	major_base=A	major_cov=28/71	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/71	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/71
RA	3771	.	1	19694	0	A	G	consensus_score=299.1	frequency=1	major_base=G	major_cov=59/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/50
RA	3772	.	1	20054	0	C	T	consensus_score=347.3	frequency=1	major_base=T	major_cov=54/72	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/72	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/72
RA	3773	.	1	20331	0	A	G	consensus_score=369.2	frequency=1	major_base=G	major_cov=57/70	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/70	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/70
RA	3774	.	1	20682	0	G	A	bias_e_value=1736730	bias_p_value=0.825814	consensus_score=479.8	fisher_strand_p_value=0.471264	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=92/81	major_frequency=9.943e-01	minor_base=T	minor_cov=0/1	new_cov=92/81	polymorphism_frequency=9.943e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=92/82
RA	3775	.	1	22477	0	A	C	consensus_score=307.3	frequency=1	major_base=C	major_cov=44/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/63
RA	3776	.	1	23617	0	A	G	consensus_score=401.9	frequency=1	major_base=G	major_cov=73/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=73/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=73/65
RA	3777	.	1	27606	0	A	C	consensus_score=415.7	frequency=1	major_base=C	major_cov=74/69	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=74/69	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=74/69
RA	3778	.	1	27814	0	T	C	consensus_score=328.0	frequency=1	major_base=C	major_cov=53/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/64
RA	3779	.	1	31153	0	A	G	consensus_score=394.6	frequency=1	major_base=G	major_cov=56/87	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/87	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/87
RA	3780	.	1	32941	0	G	A	consensus_score=337.1	frequency=1	major_base=A	major_cov=57/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/61
RA	3781	.	1	36648	0	C	A	consensus_score=389.7	frequency=1	major_base=A	major_cov=70/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=70/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=70/65
RA	3782	.	1	36927	0	A	C	consensus_score=277.2	frequency=1	major_base=C	major_cov=48/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/48
RA	3783	.	1	37641	0	A	G	consensus_score=117.6	frequency=1	major_base=G	major_cov=25/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/17
RA	3784	.	1	38571	0	G	C	consensus_score=260.9	frequency=1	major_base=C	major_cov=43/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/47
RA	3785	.	1	38719	0	A	G	consensus_score=319.1	frequency=1	major_base=G	major_cov=67/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=67/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/42
RA	3786	.	1	40842	0	A	G	consensus_score=234.2	frequency=1	major_base=G	major_cov=38/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/46
RA	3787	.	1	41100	0	G	A	consensus_score=227.2	frequency=1	major_base=A	major_cov=38/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/45
RA	3788	.	1	41928	0	C	T	consensus_score=281.6	frequency=1	major_base=T	major_cov=45/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/58
RA	3789	.	1	43662	0	C	T	consensus_score=335.0	frequency=1	major_base=T	major_cov=52/71	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/71	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/71
RA	3790	.	1	45778	0	A	G	consensus_score=324.0	frequency=1	major_base=G	major_cov=64/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/48
RA	3791	.	1	45838	0	T	C	consensus_score=357.5	frequency=1	major_base=C	major_cov=67/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=67/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/56
RA	3792	.	1	46118	0	A	G	consensus_score=322.6	frequency=1	major_base=G	major_cov=53/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/62
RA	3793	.	1	46905	0	A	G	consensus_score=251.4	frequency=1	major_base=G	major_cov=52/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/36
RA	3794	.	1	51033	0	G	A	consensus_score=284.0	frequency=1	major_base=A	major_cov=49/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/56
RA	3795	.	1	53202	0	G	A	consensus_score=420.1	frequency=1	major_base=A	major_cov=78/74	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=78/74	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=78/74
RA	3796	.	1	55356	0	T	C	consensus_score=279.0	frequency=1	major_base=C	major_cov=52/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/44
RA	3797	.	1	55509	0	A	G	consensus_score=201.0	frequency=1	major_base=G	major_cov=39/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/31
RA	3798	.	1	57038	0	T	C	consensus_score=258.6	frequency=1	major_base=C	major_cov=46/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/56
RA	3799	.	1	57538	0	T	G	bias_e_value=0.00346319	bias_p_value=1.64674e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=202.9	fisher_strand_p_value=6.74344e-11	frequency=2.661e-01	ks_quality_p_value=1	major_base=T	major_cov=28/52	major_frequency=7.339e-01	minor_base=G	minor_cov=29/0	new_cov=29/0	polymorphism_frequency=2.661e-01	polymorphism_score=10.5	prediction=polymorphism	ref_cov=28/52	total_cov=57/52
RA	3800	.	1	58225	0	A	G	consensus_score=406.8	frequency=1	major_base=G	major_cov=52/90	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/90	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/90
RA	3801	.	1	58292	0	T	C	consensus_score=381.3	frequency=1	major_base=C	major_cov=51/86	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/86	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/86
RA	3802	.	1	58929	0	C	T	consensus_score=290.7	frequency=1	major_base=T	major_cov=72/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=72/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=72/30
RA	3803	.	1	59294	0	C	T	consensus_score=296.3	frequency=1	major_base=T	major_cov=61/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/44
RA	3804	.	1	59444	0	G	C	consensus_score=424.0	frequency=1	major_base=C	major_cov=81/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=81/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=81/66
RA	3805	.	1	61271	0	T	C	consensus_score=287.1	frequency=1	major_base=C	major_cov=54/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/48
RA	3806	.	1	61390	0	C	A	consensus_score=268.3	frequency=1	major_base=A	major_cov=54/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/43
RA	3807	.	1	61818	0	T	.	bias_e_value=2102840	bias_p_value=0.999897	consensus_score=344.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.985704	major_base=.	major_cov=43/39	major_frequency=9.880e-01	minor_base=T	minor_cov=1/0	new_cov=43/39	polymorphism_frequency=9.880e-01	polymorphism_score=-2.5	prediction=consensus	ref_cov=1/0	total_cov=44/39
RA	3808	.	1	62563	0	A	G	consensus_score=356.8	frequency=1	major_base=G	major_cov=80/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=80/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=80/54
RA	3809	.	1	62771	0	C	T	consensus_score=268.7	frequency=1	major_base=T	major_cov=43/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/54
RA	3810	.	1	63403	0	G	A	bias_e_value=1768830	bias_p_value=0.841077	consensus_score=298.3	fisher_strand_p_value=0.495726	frequency=1	ks_quality_p_value=0.992805	major_base=A	major_cov=59/57	major_frequency=9.915e-01	minor_base=G	minor_cov=0/1	new_cov=59/57	polymorphism_frequency=9.915e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=59/58
RA	3811	.	1	63735	0	G	A	consensus_score=310.2	frequency=1	major_base=A	major_cov=57/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/57
RA	3812	.	1	64778	0	A	G	consensus_score=403.1	frequency=1	major_base=G	major_cov=70/73	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=70/73	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=70/73
RA	3813	.	1	66356	0	C	A	consensus_score=408.6	frequency=1	major_base=A	major_cov=69/74	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=69/74	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=69/74
RA	3814	.	1	67477	0	C	T	consensus_score=368.7	frequency=1	major_base=T	major_cov=73/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=73/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=73/59
RA	3815	.	1	68695	0	A	G	consensus_score=266.3	frequency=1	major_base=G	major_cov=41/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/53
RA	3816	.	1	69917	0	T	C	consensus_score=344.2	frequency=1	major_base=C	major_cov=58/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/60
RA	3817	.	1	70747	0	C	T	bias_e_value=0.481496	bias_p_value=2.28951e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=162.9	fisher_strand_p_value=1.18953e-08	frequency=2.323e-01	ks_quality_p_value=1	major_base=C	major_cov=48/28	major_frequency=7.677e-01	minor_base=T	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=2.323e-01	polymorphism_score=11.5	prediction=polymorphism	ref_cov=48/28	total_cov=48/51
RA	3818	.	1	70767	0	A	T	bias_e_value=0.168956	bias_p_value=8.03381e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=162.5	fisher_strand_p_value=3.9478e-09	frequency=2.444e-01	ks_quality_p_value=1	major_base=A	major_cov=46/22	major_frequency=7.556e-01	minor_base=T	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.444e-01	polymorphism_score=13.2	prediction=polymorphism	ref_cov=46/22	total_cov=46/44
RA	3819	.	1	72452	0	G	T	bias_e_value=2102760	bias_p_value=0.999859	consensus_score=274.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.98324	major_base=T	major_cov=54/45	major_frequency=9.802e-01	minor_base=G	minor_cov=1/1	new_cov=54/45	polymorphism_frequency=9.802e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=1/1	total_cov=55/46
RA	3820	.	1	72754	0	T	C	consensus_score=334.2	frequency=1	major_base=C	major_cov=65/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/54
RA	3821	.	1	73254	0	G	A	consensus_score=280.3	frequency=1	major_base=A	major_cov=42/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/61
RA	3822	.	1	73529	0	C	A	consensus_score=268.2	frequency=1	major_base=A	major_cov=51/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/49
RA	3823	.	1	74892	0	G	T	consensus_score=309.7	frequency=1	major_base=T	major_cov=53/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/60
RA	3824	.	1	75270	0	G	A	consensus_score=314.8	frequency=1	major_base=A	major_cov=50/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/59
RA	3825	.	1	75569	0	C	T	consensus_score=315.0	frequency=1	major_base=T	major_cov=57/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/54
RA	3826	.	1	75832	0	G	A	consensus_score=243.0	frequency=1	major_base=A	major_cov=49/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/40
RA	3827	.	1	76268	0	C	T	bias_e_value=0.741091	bias_p_value=3.52388e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=145.8	fisher_strand_p_value=1.8752e-08	frequency=2.444e-01	ks_quality_p_value=1	major_base=C	major_cov=44/24	major_frequency=7.556e-01	minor_base=T	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.444e-01	polymorphism_score=12.3	prediction=polymorphism	ref_cov=44/24	total_cov=44/46
RA	3828	.	1	76306	0	C	A	bias_e_value=1.37665e-07	bias_p_value=6.54594e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=125.2	fisher_strand_p_value=1.87508e-15	frequency=3.711e-01	ks_quality_p_value=1	major_base=C	major_cov=47/14	major_frequency=6.289e-01	minor_base=A	minor_cov=0/36	new_cov=0/36	polymorphism_frequency=3.711e-01	polymorphism_score=33.9	prediction=polymorphism	ref_cov=47/14	total_cov=47/50
RA	3829	.	1	76380	0	C	T	bias_e_value=4.31772e-06	bias_p_value=2.05307e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=188.9	fisher_strand_p_value=6.54738e-14	frequency=2.542e-01	ks_quality_p_value=1	major_base=C	major_cov=23/65	major_frequency=7.458e-01	minor_base=T	minor_cov=30/0	new_cov=30/0	polymorphism_frequency=2.542e-01	polymorphism_score=22.1	prediction=polymorphism	ref_cov=23/65	total_cov=53/65
RA	3830	.	1	76758	0	G	C	consensus_score=270.4	frequency=1	major_base=C	major_cov=47/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/48
RA	3831	.	1	78543	0	C	T	bias_e_value=12571.1	bias_p_value=0.00597755	consensus_score=176.4	fisher_strand_p_value=0.000726561	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=50/18	major_frequency=9.189e-01	minor_base=G	minor_cov=0/6	new_cov=50/18	polymorphism_frequency=9.189e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=0/0	total_cov=50/24
RA	3832	.	1	80646	0	C	A	consensus_score=286.7	frequency=1	major_base=A	major_cov=43/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/59
RA	3833	.	1	80650	0	G	C	consensus_score=255.6	frequency=1	major_base=C	major_cov=39/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/54
RA	3834	.	1	81876	0	T	C	consensus_score=285.4	frequency=1	major_base=C	major_cov=69/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=69/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=69/32
RA	3835	.	1	82027	0	C	T	consensus_score=337.6	frequency=1	major_base=T	major_cov=67/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=67/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/51
RA	3836	.	1	82724	0	C	G	consensus_score=336.2	frequency=1	major_base=G	major_cov=61/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/59
RA	3837	.	1	83977	0	A	C	consensus_score=272.0	frequency=1	major_base=C	major_cov=34/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/64
RA	3838	.	1	84758	0	G	T	consensus_score=239.7	frequency=1	major_base=T	major_cov=49/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/40
RA	3839	.	1	85808	0	C	T	consensus_score=243.4	frequency=1	major_base=T	major_cov=54/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/36
RA	3840	.	1	87558	0	T	C	consensus_score=296.1	frequency=1	major_base=C	major_cov=48/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/60
RA	3841	.	1	88251	0	C	T	consensus_score=358.4	frequency=1	major_base=T	major_cov=52/75	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/75	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/75
RA	3842	.	1	89499	0	T	C	consensus_score=309.6	frequency=1	major_base=C	major_cov=52/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/59
RA	3843	.	1	90348	0	T	C	consensus_score=482.1	frequency=1	major_base=C	major_cov=97/88	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=97/88	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=97/88
RA	3844	.	1	90406	0	G	C	bias_e_value=896009	bias_p_value=0.426051	consensus_reject=FREQUENCY_CUTOFF	consensus_score=321.7	fisher_strand_p_value=0.324356	frequency=2.632e-01	ks_quality_p_value=0.448721	major_base=G	major_cov=66/74	major_frequency=7.368e-01	minor_base=C	minor_cov=28/22	new_cov=28/22	polymorphism_frequency=2.632e-01	polymorphism_score=133.9	prediction=polymorphism	ref_cov=66/74	total_cov=94/96
RA	3845	.	1	90424	0	C	A	bias_e_value=1246670	bias_p_value=0.592788	consensus_reject=FREQUENCY_CUTOFF	consensus_score=303.6	fisher_strand_p_value=0.287035	frequency=7.697e-01	ks_quality_p_value=0.861497	major_base=A	major_cov=66/71	major_frequency=7.697e-01	minor_base=C	minor_cov=24/17	new_cov=66/71	polymorphism_frequency=7.697e-01	polymorphism_score=100.5	prediction=polymorphism	ref_cov=24/17	total_cov=90/88
RA	3846	.	1	90554	0	C	T	bias_e_value=2103060	bias_p_value=1	consensus_score=425.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=71/92	major_frequency=9.939e-01	minor_base=G	minor_cov=0/1	new_cov=71/92	polymorphism_frequency=9.939e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=71/93
RA	3847	.	1	90796	0	C	T	consensus_score=225.6	frequency=1	major_base=T	major_cov=39/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/43
RA	3848	.	1	91264	0	T	C	consensus_score=347.2	frequency=1	major_base=C	major_cov=70/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=70/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=70/53
RA	3849	.	1	92010	0	G	A	consensus_score=313.2	frequency=1	major_base=A	major_cov=61/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/53
RA	3850	.	1	92720	0	C	T	consensus_score=92.0	frequency=1	major_base=T	major_cov=16/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/20
RA	3851	.	1	92894	0	G	A	consensus_score=127.7	frequency=1	major_base=A	major_cov=18/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/28
RA	3852	.	1	94000	0	T	C	bias_e_value=404550	bias_p_value=0.192363	consensus_score=209.7	fisher_strand_p_value=0.0617932	frequency=1	ks_quality_p_value=0.769378	major_base=C	major_cov=40/44	major_frequency=9.438e-01	minor_base=G	minor_cov=0/5	new_cov=40/44	polymorphism_frequency=9.438e-01	polymorphism_score=-3.7	prediction=consensus	ref_cov=0/0	total_cov=40/49
RA	3853	.	1	94724	0	G	T	consensus_score=177.4	frequency=1	major_base=T	major_cov=36/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/26
RA	3854	.	1	95085	0	G	A	consensus_score=356.0	frequency=1	major_base=A	major_cov=76/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=76/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=76/55
RA	3855	.	1	95763	0	T	G	consensus_score=366.4	frequency=1	major_base=G	major_cov=60/70	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/70	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/70
RA	3856	.	1	95874	0	G	T	bias_e_value=1724750	bias_p_value=0.820114	consensus_score=399.5	fisher_strand_p_value=0.463768	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=63/74	major_frequency=9.928e-01	minor_base=A	minor_cov=1/0	new_cov=63/74	polymorphism_frequency=9.928e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/74
RA	3857	.	1	96601	0	C	T	consensus_score=298.0	frequency=1	major_base=T	major_cov=52/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/56
RA	3858	.	1	96664	0	T	C	bias_e_value=1764910	bias_p_value=0.839214	consensus_score=331.1	fisher_strand_p_value=0.491379	frequency=1	ks_quality_p_value=0.996259	major_base=C	major_cov=59/56	major_frequency=9.914e-01	minor_base=T	minor_cov=0/1	new_cov=59/56	polymorphism_frequency=9.914e-01	polymorphism_score=-5.3	prediction=consensus	ref_cov=0/1	total_cov=59/57
RA	3859	.	1	98192	0	G	A	consensus_score=384.9	frequency=1	major_base=A	major_cov=73/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=73/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=73/67
RA	3860	.	1	99274	0	G	T	bias_e_value=2103060	bias_p_value=1	consensus_score=148.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=21/32	major_frequency=9.815e-01	minor_base=G	minor_cov=0/1	new_cov=21/32	polymorphism_frequency=9.815e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=21/33
RA	3861	.	1	99900	0	G	A	bias_e_value=1717290	bias_p_value=0.816569	consensus_score=261.0	fisher_strand_p_value=0.459184	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=53/44	major_frequency=9.898e-01	minor_base=C	minor_cov=0/1	new_cov=53/44	polymorphism_frequency=9.898e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/45
RA	3862	.	1	100518	0	A	C	consensus_score=359.9	frequency=1	major_base=C	major_cov=55/76	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/76	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/76
RA	3863	.	1	101714	0	C	T	consensus_score=273.5	frequency=1	major_base=T	major_cov=51/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/50
RA	3864	.	1	102233	0	C	T	consensus_score=307.1	frequency=1	major_base=T	major_cov=62/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/53
RA	3865	.	1	102771	0	C	T	consensus_score=314.5	frequency=1	major_base=T	major_cov=46/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/67
RA	3866	.	1	102902	0	T	C	consensus_score=380.6	frequency=1	major_base=C	major_cov=68/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=68/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/62
RA	3867	.	1	103930	0	G	A	consensus_score=357.5	frequency=1	major_base=A	major_cov=67/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=67/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/61
RA	3868	.	1	104231	0	C	T	consensus_score=337.4	frequency=1	major_base=T	major_cov=66/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/55
RA	3869	.	1	104265	0	A	G	consensus_score=346.4	frequency=1	major_base=G	major_cov=63/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/61
RA	3870	.	1	104696	0	G	C	consensus_score=319.3	frequency=1	major_base=C	major_cov=46/70	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/70	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/70
RA	3871	.	1	106621	0	A	G	consensus_score=392.3	frequency=1	major_base=G	major_cov=66/71	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/71	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/71
RA	3872	.	1	108239	0	A	G	consensus_score=263.4	frequency=1	major_base=G	major_cov=46/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/50
RA	3873	.	1	109003	0	G	A	consensus_score=337.6	frequency=1	major_base=A	major_cov=63/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/60
RA	3874	.	1	109313	0	T	C	consensus_score=331.6	frequency=1	major_base=C	major_cov=53/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/65
RA	3875	.	1	111452	0	A	G	consensus_score=223.3	frequency=1	major_base=G	major_cov=39/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/41
RA	3876	.	1	111860	0	G	A	consensus_score=290.1	frequency=1	major_base=A	major_cov=42/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/64
RA	3877	.	1	112818	0	T	C	bias_e_value=1689300	bias_p_value=0.803259	consensus_score=305.0	fisher_strand_p_value=0.442478	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=49/63	major_frequency=9.912e-01	minor_base=G	minor_cov=1/0	new_cov=49/63	polymorphism_frequency=9.912e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/63
RA	3878	.	1	117171	0	C	T	bias_e_value=2103060	bias_p_value=1	consensus_score=320.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999853	major_base=T	major_cov=60/56	major_frequency=9.915e-01	minor_base=A	minor_cov=1/0	new_cov=60/56	polymorphism_frequency=9.915e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/56
RA	3879	.	1	117702	0	T	C	consensus_score=370.9	frequency=1	major_base=C	major_cov=62/70	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/70	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/70
RA	3880	.	1	117840	0	G	A	consensus_score=309.5	frequency=1	major_base=A	major_cov=62/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/52
RA	3881	.	1	118261	0	C	T	consensus_score=127.3	frequency=1	major_base=T	major_cov=20/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/28
RA	3882	.	1	118321	0	C	T	consensus_score=110.9	frequency=1	major_base=T	major_cov=20/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/23
RA	3883	.	1	118791	0	C	T	consensus_score=237.2	frequency=1	major_base=T	major_cov=50/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/37
RA	3884	.	1	119658	0	C	T	consensus_score=349.2	frequency=1	major_base=T	major_cov=64/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/62
RA	3885	.	1	122993	0	A	G	consensus_score=301.0	frequency=1	major_base=G	major_cov=57/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/52
RA	3886	.	1	124548	0	G	.	bias_e_value=1771910	bias_p_value=0.842541	consensus_score=431.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.49423	major_base=.	major_cov=50/59	major_frequency=9.909e-01	minor_base=T	minor_cov=0/1	new_cov=50/59	polymorphism_frequency=9.909e-01	polymorphism_score=-2.4	prediction=consensus	ref_cov=0/0	total_cov=51/60
RA	3887	.	1	124817	0	T	C	consensus_score=347.7	frequency=1	major_base=C	major_cov=65/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/60
RA	3888	.	1	127087	0	T	G	consensus_score=260.1	frequency=1	major_base=G	major_cov=34/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/59
RA	3889	.	1	131502	0	T	C	consensus_score=305.5	frequency=1	major_base=C	major_cov=57/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/52
RA	3890	.	1	131891	0	G	A	consensus_score=234.6	frequency=1	major_base=A	major_cov=55/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/32
RA	3891	.	1	132532	0	T	C	consensus_score=285.9	frequency=1	major_base=C	major_cov=55/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/51
RA	3892	.	1	132648	0	G	A	consensus_score=229.2	frequency=1	major_base=A	major_cov=39/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/45
RA	3893	.	1	133080	0	T	C	consensus_score=214.8	frequency=1	major_base=C	major_cov=49/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/33
RA	3894	.	1	133102	1	.	C	consensus_score=197.2	frequency=1	major_base=C	major_cov=45/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/27
RA	3895	.	1	133102	2	.	C	bias_e_value=1559450	bias_p_value=0.741516	consensus_score=189.9	fisher_strand_p_value=0.375	frequency=1	ks_quality_p_value=0.996485	major_base=C	major_cov=45/26	major_frequency=9.861e-01	minor_base=T	minor_cov=0/1	new_cov=45/26	polymorphism_frequency=9.861e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/27
RA	3896	.	1	134784	0	G	A	consensus_score=242.9	frequency=1	major_base=A	major_cov=49/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/40
RA	3897	.	1	135024	0	T	C	consensus_score=371.8	frequency=1	major_base=C	major_cov=60/72	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/72	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/72
RA	3898	.	1	138113	0	A	G	consensus_score=316.0	frequency=1	major_base=G	major_cov=48/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/61
RA	3899	.	1	138403	0	T	C	consensus_score=318.8	frequency=1	major_base=C	major_cov=49/68	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/68	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/68
RA	3900	.	1	141070	1	.	T	bias_e_value=1758330	bias_p_value=0.836082	consensus_score=179.1	fisher_strand_p_value=0.485184	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=31/32	major_frequency=8.750e-01	minor_base=.	minor_cov=3/6	new_cov=31/32	polymorphism_frequency=8.750e-01	polymorphism_score=20.4	prediction=consensus	ref_cov=3/6	total_cov=34/38
RA	3901	.	1	141141	1	.	C	consensus_score=308.1	frequency=1	major_base=C	major_cov=59/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/50
RA	3902	.	1	143328	0	C	T	consensus_score=161.1	frequency=1	major_base=T	major_cov=34/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/26
RA	3903	.	1	144195	0	T	C	consensus_score=247.6	frequency=1	major_base=C	major_cov=50/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/39
RA	3904	.	1	145483	0	C	A	consensus_score=259.3	frequency=1	major_base=A	major_cov=47/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/48
RA	3905	.	1	146294	1	.	A	bias_e_value=1585530	bias_p_value=0.753916	consensus_score=333.5	fisher_strand_p_value=0.386555	frequency=1	ks_quality_p_value=0.999858	major_base=A	major_cov=45/73	major_frequency=9.916e-01	minor_base=.	minor_cov=1/0	new_cov=45/73	polymorphism_frequency=9.916e-01	polymorphism_score=-3.5	prediction=consensus	ref_cov=1/0	total_cov=46/73
RA	3906	.	1	147575	0	G	A	consensus_score=274.7	frequency=1	major_base=A	major_cov=44/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/56
RA	3907	.	1	148703	0	T	C	consensus_score=321.8	frequency=1	major_base=C	major_cov=68/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=68/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/47
RA	3908	.	1	149716	0	T	G	consensus_score=357.8	frequency=1	major_base=G	major_cov=58/71	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/71	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/71
RA	3909	.	1	149790	0	A	G	consensus_score=342.7	frequency=1	major_base=G	major_cov=54/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/67
RA	3910	.	1	152551	0	C	T	consensus_score=360.2	frequency=1	major_base=T	major_cov=77/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=77/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=77/57
RA	3911	.	1	155826	0	G	A	consensus_score=126.5	frequency=1	major_base=A	major_cov=23/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/24
RA	3912	.	1	156497	0	T	C	bias_e_value=2103040	bias_p_value=0.999994	consensus_score=257.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.996497	major_base=C	major_cov=50/45	major_frequency=9.896e-01	minor_base=T	minor_cov=1/0	new_cov=50/45	polymorphism_frequency=9.896e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=51/45
RA	3913	.	1	158463	0	T	C	consensus_score=368.7	frequency=1	major_base=C	major_cov=69/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=69/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=69/61
RA	3914	.	1	159273	0	C	T	consensus_score=252.7	frequency=1	major_base=T	major_cov=55/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/36
RA	3915	.	1	159846	0	A	T	consensus_score=137.7	frequency=1	major_base=T	major_cov=26/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/26
RA	3916	.	1	161826	0	T	C	consensus_score=334.5	frequency=1	major_base=C	major_cov=63/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/53
RA	3917	.	1	162277	0	T	C	consensus_score=309.9	frequency=1	major_base=C	major_cov=52/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/54
RA	3918	.	1	162599	0	C	T	consensus_score=268.4	frequency=1	major_base=T	major_cov=42/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/51
RA	3919	.	1	163373	0	G	A	consensus_score=301.9	frequency=1	major_base=A	major_cov=48/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/61
RA	3920	.	1	163392	0	A	G	consensus_score=297.0	frequency=1	major_base=G	major_cov=51/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/54
RA	3921	.	1	163942	0	C	A	consensus_score=323.4	frequency=1	major_base=A	major_cov=68/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=68/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/50
RA	3922	.	1	163997	0	G	A	consensus_score=344.5	frequency=1	major_base=A	major_cov=63/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/63
RA	3923	.	1	166050	0	G	A	consensus_score=292.2	frequency=1	major_base=A	major_cov=53/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/51
RA	3924	.	1	169788	0	A	C	consensus_score=290.6	frequency=1	major_base=C	major_cov=59/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/47
RA	3925	.	1	170862	0	G	C	bias_e_value=1700050	bias_p_value=0.808372	consensus_score=312.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.448804	major_base=C	major_cov=62/56	major_frequency=9.916e-01	minor_base=.	minor_cov=1/0	new_cov=62/56	polymorphism_frequency=9.916e-01	polymorphism_score=-3.4	prediction=consensus	ref_cov=0/0	total_cov=63/56
RA	3926	.	1	171809	0	G	A	consensus_score=277.4	frequency=1	major_base=A	major_cov=33/69	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/69	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/69
RA	3927	.	1	172269	0	G	.	consensus_score=435.1	frequency=1	major_base=.	major_cov=51/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/51
RA	3928	.	1	172273	1	.	T	consensus_score=260.6	frequency=1	major_base=T	major_cov=49/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/47
RA	3929	.	1	172357	0	T	G	consensus_score=302.0	frequency=1	major_base=G	major_cov=47/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/63
RA	3930	.	1	173104	0	G	A	consensus_score=281.1	frequency=1	major_base=A	major_cov=40/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/63
RA	3931	.	1	173255	0	C	T	bias_e_value=2103060	bias_p_value=1	consensus_score=326.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999411	major_base=T	major_cov=58/58	major_frequency=9.915e-01	minor_base=C	minor_cov=1/0	new_cov=58/58	polymorphism_frequency=9.915e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=59/58
RA	3932	.	1	173503	0	G	A	consensus_score=320.8	frequency=1	major_base=A	major_cov=72/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=72/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=72/46
RA	3933	.	1	174022	0	T	C	consensus_score=299.2	frequency=1	major_base=C	major_cov=61/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/43
RA	3934	.	1	174640	0	C	T	consensus_score=264.2	frequency=1	major_base=T	major_cov=47/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/50
RA	3935	.	1	176138	0	T	G	bias_e_value=3.1009e-07	bias_p_value=1.47447e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=220.0	fisher_strand_p_value=4.32729e-15	frequency=2.712e-01	ks_quality_p_value=1	major_base=T	major_cov=21/65	major_frequency=7.288e-01	minor_base=G	minor_cov=32/0	new_cov=32/0	polymorphism_frequency=2.712e-01	polymorphism_score=17.8	prediction=polymorphism	ref_cov=21/65	total_cov=55/65
RA	3936	.	1	176141	0	C	T	bias_e_value=3.29391e-06	bias_p_value=1.56625e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=171.3	fisher_strand_p_value=4.95075e-14	frequency=2.393e-01	ks_quality_p_value=1	major_base=C	major_cov=21/68	major_frequency=7.607e-01	minor_base=T	minor_cov=28/0	new_cov=28/0	polymorphism_frequency=2.393e-01	polymorphism_score=17.3	prediction=polymorphism	ref_cov=21/68	total_cov=54/68
RA	3937	.	1	176151	0	C	A	bias_e_value=5.73551e-06	bias_p_value=2.72723e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=224.6	fisher_strand_p_value=8.77944e-14	frequency=2.564e-01	ks_quality_p_value=1	major_base=C	major_cov=23/64	major_frequency=7.436e-01	minor_base=A	minor_cov=30/0	new_cov=30/0	polymorphism_frequency=2.564e-01	polymorphism_score=23.0	prediction=polymorphism	ref_cov=23/64	total_cov=53/64
RA	3938	.	1	176162	0	C	T	bias_e_value=5.22145e-11	bias_p_value=2.48279e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=157.4	fisher_strand_p_value=5.77451e-19	frequency=3.153e-01	ks_quality_p_value=1	major_base=C	major_cov=12/64	major_frequency=6.847e-01	minor_base=T	minor_cov=35/0	new_cov=35/0	polymorphism_frequency=3.153e-01	polymorphism_score=25.2	prediction=polymorphism	ref_cov=12/64	total_cov=47/64
RA	3939	.	1	176192	0	A	G	bias_e_value=1.98333e-05	bias_p_value=9.43069e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=164.4	fisher_strand_p_value=3.16669e-13	frequency=2.736e-01	ks_quality_p_value=1	major_base=A	major_cov=20/57	major_frequency=7.264e-01	minor_base=G	minor_cov=29/0	new_cov=29/0	polymorphism_frequency=2.736e-01	polymorphism_score=12.6	prediction=polymorphism	ref_cov=20/57	total_cov=49/57
RA	3940	.	1	176203	0	G	T	bias_e_value=3.88758e-08	bias_p_value=1.84854e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=172.5	fisher_strand_p_value=5.10488e-16	frequency=3.200e-01	ks_quality_p_value=1	major_base=G	major_cov=13/55	major_frequency=6.800e-01	minor_base=T	minor_cov=32/0	new_cov=32/0	polymorphism_frequency=3.200e-01	polymorphism_score=31.0	prediction=polymorphism	ref_cov=13/55	total_cov=45/55
RA	3941	.	1	176738	0	A	G	consensus_score=224.3	frequency=1	major_base=G	major_cov=35/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/47
RA	3942	.	1	178345	0	C	G	consensus_score=340.7	frequency=1	major_base=G	major_cov=62/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/56
RA	3943	.	1	178940	0	A	G	consensus_score=343.2	frequency=1	major_base=G	major_cov=57/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/65
RA	3944	.	1	179410	0	G	T	consensus_score=333.5	frequency=1	major_base=T	major_cov=55/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/64
RA	3945	.	1	179577	0	G	A	consensus_score=196.5	frequency=1	major_base=A	major_cov=36/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/36
RA	3946	.	1	184786	0	T	C	consensus_score=276.7	frequency=1	major_base=C	major_cov=57/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/42
RA	3947	.	1	185850	0	G	A	bias_e_value=197648	bias_p_value=0.0939815	consensus_score=189.0	fisher_strand_p_value=0.0189189	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=55/18	major_frequency=9.605e-01	minor_base=G	minor_cov=0/3	new_cov=55/18	polymorphism_frequency=9.605e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/3	total_cov=55/22
RA	3948	.	1	186329	0	C	G	bias_e_value=0.0470413	bias_p_value=2.23681e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=106.0	fisher_strand_p_value=1.03114e-09	frequency=2.941e-01	ks_quality_p_value=1	major_base=C	major_cov=11/37	major_frequency=7.059e-01	minor_base=G	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.941e-01	polymorphism_score=11.2	prediction=polymorphism	ref_cov=11/37	total_cov=31/37
RA	3949	.	1	186351	0	G	T	bias_e_value=0.00708877	bias_p_value=3.3707e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=98.0	fisher_strand_p_value=1.42389e-10	frequency=3.279e-01	ks_quality_p_value=1	major_base=G	major_cov=7/34	major_frequency=6.721e-01	minor_base=T	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=3.279e-01	polymorphism_score=13.5	prediction=polymorphism	ref_cov=7/34	total_cov=27/34
RA	3950	.	1	186361	0	C	A	bias_e_value=3.02158	bias_p_value=1.43675e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=108.8	fisher_strand_p_value=8.30299e-08	frequency=2.540e-01	ks_quality_p_value=1	major_base=C	major_cov=12/35	major_frequency=7.460e-01	minor_base=A	minor_cov=16/0	new_cov=16/0	polymorphism_frequency=2.540e-01	polymorphism_score=11.6	prediction=polymorphism	ref_cov=12/35	total_cov=28/35
RA	3951	.	1	186365	0	T	G	bias_e_value=0.0319471	bias_p_value=1.51908e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=119.1	fisher_strand_p_value=6.87426e-10	frequency=3.088e-01	ks_quality_p_value=1	major_base=T	major_cov=11/36	major_frequency=6.912e-01	minor_base=G	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=3.088e-01	polymorphism_score=11.3	prediction=polymorphism	ref_cov=11/36	total_cov=33/36
RA	3952	.	1	186371	0	A	G	bias_e_value=0.00274136	bias_p_value=1.30351e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=69.6	fisher_strand_p_value=5.28517e-11	frequency=3.433e-01	ks_quality_p_value=1	major_base=A	major_cov=9/35	major_frequency=6.567e-01	minor_base=G	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=3.433e-01	polymorphism_score=22.3	prediction=polymorphism	ref_cov=9/35	total_cov=32/35
RA	3953	.	1	186400	0	T	G	bias_e_value=27.9094	bias_p_value=1.32709e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=146.6	fisher_strand_p_value=8.88662e-07	frequency=2.286e-01	ks_quality_p_value=1	major_base=T	major_cov=18/36	major_frequency=7.714e-01	minor_base=G	minor_cov=16/0	new_cov=16/0	polymorphism_frequency=2.286e-01	polymorphism_score=10.2	prediction=polymorphism	ref_cov=18/36	total_cov=34/36
RA	3954	.	1	186624	0	A	C	bias_e_value=8.61365e-10	bias_p_value=4.09577e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=171.6	fisher_strand_p_value=1.0208e-17	frequency=3.396e-01	ks_quality_p_value=1	major_base=A	major_cov=57/13	major_frequency=6.604e-01	minor_base=C	minor_cov=0/36	new_cov=0/36	polymorphism_frequency=3.396e-01	polymorphism_score=21.5	prediction=polymorphism	ref_cov=57/13	total_cov=57/53
RA	3955	.	1	186822	0	T	C	consensus_score=299.1	frequency=1	major_base=C	major_cov=49/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/58
RA	3956	.	1	187296	0	A	G	consensus_score=221.4	frequency=1	major_base=G	major_cov=30/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/50
RA	3957	.	1	190491	0	C	T	bias_e_value=2102030	bias_p_value=0.999513	consensus_score=278.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.968939	major_base=T	major_cov=53/50	major_frequency=9.904e-01	minor_base=A	minor_cov=1/0	new_cov=53/50	polymorphism_frequency=9.904e-01	polymorphism_score=-3.9	prediction=consensus	ref_cov=0/0	total_cov=54/50
RA	3958	.	1	190963	0	G	T	consensus_score=126.4	frequency=1	major_base=T	major_cov=14/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/31
RA	3959	.	1	193246	0	G	T	bias_e_value=1690740	bias_p_value=0.803942	consensus_score=282.6	fisher_strand_p_value=0.443396	frequency=1	ks_quality_p_value=0.99982	major_base=T	major_cov=46/59	major_frequency=9.906e-01	minor_base=.	minor_cov=1/0	new_cov=46/59	polymorphism_frequency=9.906e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=0/0	total_cov=47/59
RA	3960	.	1	195328	0	G	A	consensus_score=227.3	frequency=1	major_base=A	major_cov=35/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/49
RA	3961	.	1	196508	0	G	C	bias_e_value=2103060	bias_p_value=1	consensus_score=204.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=45/29	major_frequency=9.867e-01	minor_base=G	minor_cov=1/0	new_cov=45/29	polymorphism_frequency=9.867e-01	polymorphism_score=-6.0	prediction=consensus	ref_cov=1/0	total_cov=46/29
RA	3962	.	1	197227	0	T	C	consensus_score=311.6	frequency=1	major_base=C	major_cov=34/73	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/73	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/73
RA	3963	.	1	199973	0	C	T	consensus_score=282.4	frequency=1	major_base=T	major_cov=42/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/57
RA	3964	.	1	200058	0	T	C	bias_e_value=2103060	bias_p_value=1	consensus_score=289.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=43/60	major_frequency=9.904e-01	minor_base=A	minor_cov=0/1	new_cov=43/60	polymorphism_frequency=9.904e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/61
RA	3965	.	1	200083	0	A	C	consensus_score=293.2	frequency=1	major_base=C	major_cov=44/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/62
RA	3966	.	1	202687	0	C	A	consensus_score=267.5	frequency=1	major_base=A	major_cov=50/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/49
RA	3967	.	1	203299	0	G	A	consensus_score=270.6	frequency=1	major_base=A	major_cov=48/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/52
RA	3968	.	1	203596	0	A	C	consensus_score=174.6	frequency=1	major_base=C	major_cov=35/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/28
RA	3969	.	1	203736	0	T	G	consensus_score=80.7	frequency=1	major_base=G	major_cov=12/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/19
RA	3970	.	1	203792	1	.	T	consensus_score=137.4	frequency=1	major_base=T	major_cov=16/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/35
RA	3971	.	1	203822	0	G	A	consensus_score=177.3	frequency=1	major_base=A	major_cov=22/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/43
RA	3972	.	1	207386	0	A	C	bias_e_value=1.53035e-05	bias_p_value=7.27679e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=129.6	fisher_strand_p_value=2.42163e-13	frequency=3.605e-01	ks_quality_p_value=1	major_base=A	major_cov=42/13	major_frequency=6.395e-01	minor_base=C	minor_cov=0/31	new_cov=0/31	polymorphism_frequency=3.605e-01	polymorphism_score=12.2	prediction=polymorphism	ref_cov=42/13	total_cov=42/45
RA	3973	.	1	208818	0	C	T	consensus_score=148.7	frequency=1	major_base=T	major_cov=30/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/25
RA	3974	.	1	209771	0	C	T	consensus_score=206.3	frequency=1	major_base=T	major_cov=39/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/36
RA	3975	.	1	211130	0	T	C	consensus_score=241.9	frequency=1	major_base=C	major_cov=46/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/37
RA	3976	.	1	212204	0	C	T	consensus_score=10.2	frequency=1	major_base=T	major_cov=3/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/3
RA	3977	.	1	212244	0	A	C	consensus_score=14.2	frequency=1	major_base=C	major_cov=3/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/4
RA	3978	.	1	213203	0	C	G	consensus_score=308.7	frequency=1	major_base=G	major_cov=53/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/57
RA	3979	.	1	214554	0	C	A	consensus_score=283.0	frequency=1	major_base=A	major_cov=52/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/51
RA	3980	.	1	214835	0	T	C	consensus_score=234.8	frequency=1	major_base=C	major_cov=42/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/42
RA	3981	.	1	216472	0	G	T	consensus_score=183.1	frequency=1	major_base=T	major_cov=40/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/27
RA	3982	.	1	216769	0	T	G	consensus_score=262.5	frequency=1	major_base=G	major_cov=44/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/46
RA	3983	.	1	217052	0	T	C	consensus_score=230.2	frequency=1	major_base=C	major_cov=45/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/40
RA	3984	.	1	217600	0	G	A	bias_e_value=2103060	bias_p_value=1	consensus_score=231.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=40/44	major_frequency=9.882e-01	minor_base=G	minor_cov=0/1	new_cov=40/44	polymorphism_frequency=9.882e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=40/45
RA	3985	.	1	218121	0	G	A	consensus_score=218.5	frequency=1	major_base=A	major_cov=42/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/38
RA	3986	.	1	218652	0	T	C	bias_e_value=1583970	bias_p_value=0.753175	consensus_score=257.8	fisher_strand_p_value=0.387755	frequency=1	ks_quality_p_value=0.994754	major_base=C	major_cov=37/60	major_frequency=9.898e-01	minor_base=A	minor_cov=1/0	new_cov=37/60	polymorphism_frequency=9.898e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/60
RA	3987	.	1	218902	0	T	C	consensus_score=281.4	frequency=1	major_base=C	major_cov=55/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/55
RA	3988	.	1	219447	0	C	A	consensus_score=299.4	frequency=1	major_base=A	major_cov=50/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/58
RA	3989	.	1	219991	0	C	T	consensus_score=224.4	frequency=1	major_base=T	major_cov=53/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/31
RA	3990	.	1	220983	0	A	G	consensus_score=286.7	frequency=1	major_base=G	major_cov=56/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/48
RA	3991	.	1	221750	0	A	T	consensus_score=230.4	frequency=1	major_base=T	major_cov=55/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/29
RA	3992	.	1	223107	0	G	A	bias_e_value=1739150	bias_p_value=0.826965	consensus_score=206.9	fisher_strand_p_value=0.472973	frequency=1	ks_quality_p_value=0.99963	major_base=A	major_cov=34/39	major_frequency=9.865e-01	minor_base=C	minor_cov=1/0	new_cov=34/39	polymorphism_frequency=9.865e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/39
RA	3993	.	1	224174	0	C	T	consensus_score=111.0	frequency=1	major_base=T	major_cov=23/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/18
RA	3994	.	1	225206	0	A	.	bias_e_value=2103060	bias_p_value=1	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=7.1	fisher_strand_p_value=1	frequency=5.455e-01	ks_quality_p_value=1	major_base=.	major_cov=4/2	major_frequency=5.455e-01	minor_base=A	minor_cov=3/2	new_cov=4/2	polymorphism_frequency=5.455e-01	polymorphism_score=16.9	prediction=polymorphism	ref_cov=3/2	total_cov=7/4
RA	3995	.	1	225207	0	G	.	bias_e_value=2081220	bias_p_value=0.989618	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=7.6	fisher_strand_p_value=1	frequency=5.455e-01	ks_quality_p_value=0.859405	major_base=.	major_cov=4/2	major_frequency=5.455e-01	minor_base=G	minor_cov=3/2	new_cov=4/2	polymorphism_frequency=5.455e-01	polymorphism_score=19.6	prediction=polymorphism	ref_cov=3/2	total_cov=7/4
RA	3996	.	1	225225	0	C	A	consensus_score=11.6	frequency=1	major_base=A	major_cov=5/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/3
RA	3997	.	1	225226	0	G	A	consensus_score=11.6	frequency=1	major_base=A	major_cov=5/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/3
RA	3998	.	1	225246	0	T	C	bias_e_value=1777730	bias_p_value=0.845306	consensus_score=15.9	fisher_strand_p_value=0.569231	frequency=1	ks_quality_p_value=0.875173	major_base=C	major_cov=7/5	major_frequency=8.000e-01	minor_base=T	minor_cov=1/2	new_cov=7/5	polymorphism_frequency=8.000e-01	polymorphism_score=0.5	prediction=consensus	ref_cov=1/2	total_cov=8/7
RA	3999	.	1	225247	0	C	A	bias_e_value=1848900	bias_p_value=0.87915	consensus_score=18.5	fisher_strand_p_value=0.569231	frequency=1	ks_quality_p_value=0.967216	major_base=A	major_cov=7/5	major_frequency=8.000e-01	minor_base=C	minor_cov=1/2	new_cov=7/5	polymorphism_frequency=8.000e-01	polymorphism_score=1.9	prediction=consensus	ref_cov=1/2	total_cov=8/7
RA	4000	.	1	225293	0	G	A	bias_e_value=1038310	bias_p_value=0.493715	consensus_score=74.5	fisher_strand_p_value=0.529412	frequency=1	ks_quality_p_value=0.345591	major_base=A	major_cov=12/20	major_frequency=9.412e-01	minor_base=G	minor_cov=0/2	new_cov=12/20	polymorphism_frequency=9.412e-01	polymorphism_score=-3.0	prediction=consensus	ref_cov=0/2	total_cov=12/22
RA	4001	.	1	225297	0	T	C	bias_e_value=1038310	bias_p_value=0.493715	consensus_score=78.7	fisher_strand_p_value=0.529412	frequency=1	ks_quality_p_value=0.345591	major_base=C	major_cov=12/20	major_frequency=9.412e-01	minor_base=T	minor_cov=0/2	new_cov=12/20	polymorphism_frequency=9.412e-01	polymorphism_score=-3.0	prediction=consensus	ref_cov=0/2	total_cov=12/22
RA	4002	.	1	225350	0	G	A	consensus_score=182.4	frequency=1	major_base=A	major_cov=31/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/38
RA	4003	.	1	226146	0	G	A	consensus_score=128.2	frequency=1	major_base=A	major_cov=23/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/26
RA	4004	.	1	227599	0	T	C	consensus_score=257.0	frequency=1	major_base=C	major_cov=48/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/44
RA	4005	.	1	228495	0	A	G	consensus_score=235.4	frequency=1	major_base=G	major_cov=44/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/42
RA	4006	.	1	228800	0	A	G	consensus_score=268.4	frequency=1	major_base=G	major_cov=46/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/52
RA	4007	.	1	228985	0	C	T	consensus_score=202.2	frequency=1	major_base=T	major_cov=30/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/44
RA	4008	.	1	229234	0	C	A	bias_e_value=1743610	bias_p_value=0.829083	consensus_score=290.7	fisher_strand_p_value=0.475728	frequency=1	ks_quality_p_value=0.99981	major_base=A	major_cov=54/48	major_frequency=9.903e-01	minor_base=G	minor_cov=0/1	new_cov=54/48	polymorphism_frequency=9.903e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/49
RA	4009	.	1	231601	0	A	G	consensus_score=180.0	frequency=1	major_base=G	major_cov=23/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/41
RA	4010	.	1	232004	0	C	A	consensus_score=296.7	frequency=1	major_base=A	major_cov=62/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/46
RA	4011	.	1	233492	0	A	C	consensus_score=253.7	frequency=1	major_base=C	major_cov=41/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/47
RA	4012	.	1	236788	0	A	G	consensus_score=231.3	frequency=1	major_base=G	major_cov=39/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/44
RA	4013	.	1	237372	0	T	C	consensus_score=184.4	frequency=1	major_base=C	major_cov=32/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/36
RA	4014	.	1	238232	0	C	T	bias_e_value=2103060	bias_p_value=1	consensus_score=278.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=52/51	major_frequency=9.904e-01	minor_base=C	minor_cov=1/0	new_cov=52/51	polymorphism_frequency=9.904e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=53/51
RA	4015	.	1	240695	0	A	G	consensus_score=171.4	frequency=1	major_base=G	major_cov=31/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/32
RA	4016	.	1	240724	0	A	G	consensus_score=184.1	frequency=1	major_base=G	major_cov=32/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/34
RA	4017	.	1	241007	0	C	T	consensus_score=221.0	frequency=1	major_base=T	major_cov=43/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/39
RA	4018	.	1	241395	0	T	C	consensus_score=250.0	frequency=1	major_base=C	major_cov=51/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/38
RA	4019	.	1	242283	0	A	G	consensus_score=217.9	frequency=1	major_base=G	major_cov=37/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/41
RA	4020	.	1	242450	0	C	G	consensus_score=256.4	frequency=1	major_base=G	major_cov=54/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/39
RA	4021	.	1	243486	0	T	A	bias_e_value=0.067182	bias_p_value=3.19449e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=157.1	fisher_strand_p_value=1.49844e-09	frequency=2.152e-01	ks_quality_p_value=1	major_base=T	major_cov=13/49	major_frequency=7.848e-01	minor_base=A	minor_cov=17/0	new_cov=17/0	polymorphism_frequency=2.152e-01	polymorphism_score=11.9	prediction=polymorphism	ref_cov=13/49	total_cov=30/49
RA	4022	.	1	244429	0	T	G	bias_e_value=9.41489e-12	bias_p_value=4.47677e-18	consensus_reject=FREQUENCY_CUTOFF	consensus_score=156.6	fisher_strand_p_value=1.00042e-19	frequency=3.737e-01	ks_quality_p_value=1	major_base=T	major_cov=8/54	major_frequency=6.263e-01	minor_base=G	minor_cov=37/0	new_cov=37/0	polymorphism_frequency=3.737e-01	polymorphism_score=15.1	prediction=polymorphism	ref_cov=8/54	total_cov=45/54
RA	4023	.	1	244449	0	T	G	bias_e_value=5.95876e-06	bias_p_value=2.83338e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=185.8	fisher_strand_p_value=9.13277e-14	frequency=3.173e-01	ks_quality_p_value=1	major_base=T	major_cov=16/55	major_frequency=6.827e-01	minor_base=G	minor_cov=32/1	new_cov=32/1	polymorphism_frequency=3.173e-01	polymorphism_score=14.1	prediction=polymorphism	ref_cov=16/55	total_cov=48/56
RA	4024	.	1	244454	0	C	T	bias_e_value=0.00129934	bias_p_value=6.17836e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=160.3	fisher_strand_p_value=2.42849e-11	frequency=2.358e-01	ks_quality_p_value=1	major_base=C	major_cov=23/58	major_frequency=7.642e-01	minor_base=T	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.358e-01	polymorphism_score=14.0	prediction=polymorphism	ref_cov=23/58	total_cov=48/58
RA	4025	.	1	244730	0	G	T	consensus_score=211.9	frequency=1	major_base=T	major_cov=42/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/34
RA	4026	.	1	246800	0	T	G	consensus_score=159.1	frequency=1	major_base=G	major_cov=7/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/51
RA	4027	.	1	247159	0	A	T	bias_e_value=14.2092	bias_p_value=6.75645e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=138.1	fisher_strand_p_value=4.3156e-07	frequency=2.667e-01	ks_quality_p_value=1	major_base=A	major_cov=21/34	major_frequency=7.333e-01	minor_base=T	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.667e-01	polymorphism_score=13.9	prediction=polymorphism	ref_cov=21/34	total_cov=41/34
RA	4028	.	1	247684	0	A	G	consensus_score=244.9	frequency=1	major_base=G	major_cov=55/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/33
RA	4029	.	1	247850	0	G	T	consensus_score=187.2	frequency=1	major_base=T	major_cov=35/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/35
RA	4030	.	1	247851	0	T	C	consensus_score=202.2	frequency=1	major_base=C	major_cov=35/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/35
RA	4031	.	1	248853	0	T	C	consensus_score=191.0	frequency=1	major_base=C	major_cov=25/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/45
RA	4032	.	1	250320	0	T	C	consensus_score=274.3	frequency=1	major_base=C	major_cov=54/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/44
RA	4033	.	1	252196	0	A	G	consensus_score=274.6	frequency=1	major_base=G	major_cov=42/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/57
RA	4034	.	1	253505	0	T	C	bias_e_value=1649030	bias_p_value=0.784112	consensus_score=209.8	fisher_strand_p_value=0.421053	frequency=1	ks_quality_p_value=0.996847	major_base=C	major_cov=44/31	major_frequency=9.868e-01	minor_base=A	minor_cov=0/1	new_cov=44/31	polymorphism_frequency=9.868e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/32
RA	4035	.	1	254337	0	A	C	consensus_score=161.3	frequency=1	major_base=C	major_cov=43/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/14
RA	4036	.	1	254513	0	A	C	bias_e_value=1634120	bias_p_value=0.777023	consensus_score=231.1	fisher_strand_p_value=0.411765	frequency=1	ks_quality_p_value=0.99972	major_base=C	major_cov=50/34	major_frequency=9.882e-01	minor_base=T	minor_cov=0/1	new_cov=50/34	polymorphism_frequency=9.882e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/35
RA	4037	.	1	254532	0	A	G	consensus_score=248.8	frequency=1	major_base=G	major_cov=49/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/38
RA	4038	.	1	254709	0	C	T	consensus_score=270.9	frequency=1	major_base=T	major_cov=45/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/54
RA	4039	.	1	258864	0	C	A	consensus_score=208.4	frequency=1	major_base=A	major_cov=43/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/34
RA	4040	.	1	260770	0	A	G	consensus_score=247.8	frequency=1	major_base=G	major_cov=45/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/43
RA	4041	.	1	261020	0	T	C	consensus_score=211.6	frequency=1	major_base=C	major_cov=34/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/41
RA	4042	.	1	261330	0	A	G	consensus_score=261.4	frequency=1	major_base=G	major_cov=49/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/41
RA	4043	.	1	261334	0	A	G	consensus_score=261.5	frequency=1	major_base=G	major_cov=49/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/41
RA	4044	.	1	262131	0	A	G	consensus_score=197.0	frequency=1	major_base=G	major_cov=40/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/31
RA	4045	.	1	262503	0	T	C	consensus_score=201.9	frequency=1	major_base=C	major_cov=44/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/29
RA	4046	.	1	262686	0	A	G	consensus_score=216.2	frequency=1	major_base=G	major_cov=45/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/34
RA	4047	.	1	264853	0	C	T	consensus_score=231.9	frequency=1	major_base=T	major_cov=45/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/42
RA	4048	.	1	265609	0	G	T	bias_e_value=0.113369	bias_p_value=5.39067e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=83.0	fisher_strand_p_value=2.59547e-09	frequency=3.676e-01	ks_quality_p_value=1	major_base=G	major_cov=13/30	major_frequency=6.324e-01	minor_base=T	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=3.676e-01	polymorphism_score=24.4	prediction=polymorphism	ref_cov=13/30	total_cov=39/30
RA	4049	.	1	265625	0	G	T	bias_e_value=0.29754	bias_p_value=1.4148e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=140.4	fisher_strand_p_value=7.1619e-09	frequency=2.561e-01	ks_quality_p_value=1	major_base=G	major_cov=19/42	major_frequency=7.439e-01	minor_base=T	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.561e-01	polymorphism_score=16.7	prediction=polymorphism	ref_cov=19/42	total_cov=40/42
RA	4050	.	1	265773	0	T	C	bias_e_value=228798	bias_p_value=0.108793	consensus_score=244.2	fisher_strand_p_value=0.0227435	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=43/52	major_frequency=9.500e-01	minor_base=G	minor_cov=5/0	new_cov=43/52	polymorphism_frequency=9.500e-01	polymorphism_score=-6.4	prediction=consensus	ref_cov=0/0	total_cov=48/52
RA	4051	.	1	266438	0	T	C	consensus_score=324.4	frequency=1	major_base=C	major_cov=62/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/50
RA	4052	.	1	268892	0	A	G	consensus_score=337.9	frequency=1	major_base=G	major_cov=50/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/67
RA	4053	.	1	268935	0	T	C	consensus_score=294.7	frequency=1	major_base=C	major_cov=45/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/58
RA	4054	.	1	270352	0	C	G	bias_e_value=513222	bias_p_value=0.244036	consensus_score=157.2	fisher_strand_p_value=0.0655738	frequency=1	ks_quality_p_value=0.998889	major_base=G	major_cov=45/14	major_frequency=9.672e-01	minor_base=A	minor_cov=0/2	new_cov=45/14	polymorphism_frequency=9.672e-01	polymorphism_score=-5.4	prediction=consensus	ref_cov=0/0	total_cov=45/16
RA	4055	.	1	272984	0	T	C	consensus_score=201.1	frequency=1	major_base=C	major_cov=34/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/39
RA	4056	.	1	273343	0	C	T	consensus_score=268.9	frequency=1	major_base=T	major_cov=50/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/48
RA	4057	.	1	275047	0	T	C	consensus_score=222.4	frequency=1	major_base=C	major_cov=36/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/42
RA	4058	.	1	275976	0	C	T	consensus_score=239.5	frequency=1	major_base=T	major_cov=47/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/41
RA	4059	.	1	276030	0	A	C	consensus_score=292.4	frequency=1	major_base=C	major_cov=53/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/48
RA	4060	.	1	276129	0	C	T	consensus_score=234.3	frequency=1	major_base=T	major_cov=37/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/48
RA	4061	.	1	276670	0	C	T	bias_e_value=1540310	bias_p_value=0.732417	consensus_score=141.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.364553	major_base=T	major_cov=25/28	major_frequency=9.815e-01	minor_base=C	minor_cov=0/1	new_cov=25/28	polymorphism_frequency=9.815e-01	polymorphism_score=-4.6	prediction=consensus	ref_cov=0/1	total_cov=25/29
RA	4062	.	1	277038	0	A	G	consensus_score=183.9	frequency=1	major_base=G	major_cov=37/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/27
RA	4063	.	1	278727	0	C	T	consensus_score=198.2	frequency=1	major_base=T	major_cov=29/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/45
RA	4064	.	1	278899	0	C	T	consensus_score=201.3	frequency=1	major_base=T	major_cov=40/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/34
RA	4065	.	1	282391	0	A	G	consensus_score=188.4	frequency=1	major_base=G	major_cov=22/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/45
RA	4066	.	1	283215	0	T	C	consensus_score=192.4	frequency=1	major_base=C	major_cov=28/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/40
RA	4067	.	1	284334	0	G	T	consensus_score=185.9	frequency=1	major_base=T	major_cov=28/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/38
RA	4068	.	1	285274	0	G	A	consensus_score=144.7	frequency=1	major_base=A	major_cov=24/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/30
RA	4069	.	1	285692	0	G	T	consensus_score=220.9	frequency=1	major_base=T	major_cov=46/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/34
RA	4070	.	1	287860	0	C	T	consensus_score=235.7	frequency=1	major_base=T	major_cov=49/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/36
RA	4071	.	1	290823	0	T	C	consensus_score=204.1	frequency=1	major_base=C	major_cov=29/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/42
RA	4072	.	1	291589	1	.	A	bias_e_value=2103050	bias_p_value=0.999999	consensus_score=201.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.99852	major_base=A	major_cov=35/38	major_frequency=9.865e-01	minor_base=.	minor_cov=0/1	new_cov=35/38	polymorphism_frequency=9.865e-01	polymorphism_score=-3.4	prediction=consensus	ref_cov=0/1	total_cov=35/39
RA	4073	.	1	292133	0	T	C	consensus_score=252.0	frequency=1	major_base=C	major_cov=44/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/45
RA	4074	.	1	292485	0	T	C	consensus_score=196.1	frequency=1	major_base=C	major_cov=32/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/39
RA	4075	.	1	292883	0	A	G	consensus_score=169.8	frequency=1	major_base=G	major_cov=32/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/28
RA	4076	.	1	293132	0	C	T	consensus_score=271.0	frequency=1	major_base=T	major_cov=42/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/55
RA	4077	.	1	294020	0	C	T	consensus_score=214.7	frequency=1	major_base=T	major_cov=51/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/28
RA	4078	.	1	294526	0	C	A	consensus_score=257.5	frequency=1	major_base=A	major_cov=48/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/47
RA	4079	.	1	299798	0	C	T	consensus_score=112.6	frequency=1	major_base=T	major_cov=24/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/17
RA	4080	.	1	300068	0	A	G	consensus_score=260.8	frequency=1	major_base=G	major_cov=37/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/54
RA	4081	.	1	301551	0	G	A	consensus_score=240.7	frequency=1	major_base=A	major_cov=42/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/47
RA	4082	.	1	301835	0	A	T	bias_e_value=0.599946	bias_p_value=2.85273e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=148.3	fisher_strand_p_value=1.50025e-08	frequency=2.329e-01	ks_quality_p_value=1	major_base=A	major_cov=14/42	major_frequency=7.671e-01	minor_base=T	minor_cov=17/0	new_cov=17/0	polymorphism_frequency=2.329e-01	polymorphism_score=11.8	prediction=polymorphism	ref_cov=14/42	total_cov=31/42
RA	4083	.	1	302175	0	C	T	consensus_score=83.1	frequency=1	major_base=T	major_cov=18/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/14
RA	4084	.	1	304301	0	C	T	consensus_score=198.5	frequency=1	major_base=T	major_cov=45/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/28
RA	4085	.	1	305891	0	G	A	consensus_score=170.9	frequency=1	major_base=A	major_cov=31/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/32
RA	4086	.	1	306732	0	G	A	consensus_score=174.7	frequency=1	major_base=A	major_cov=27/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/38
RA	4087	.	1	307364	0	C	T	consensus_score=226.2	frequency=1	major_base=T	major_cov=41/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/41
RA	4088	.	1	309549	0	A	C	consensus_score=83.0	frequency=1	major_base=C	major_cov=9/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/21
RA	4089	.	1	310798	0	T	C	consensus_score=194.6	frequency=1	major_base=C	major_cov=29/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/38
RA	4090	.	1	311434	0	G	T	bias_e_value=0.00010607	bias_p_value=5.04361e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=162.1	fisher_strand_p_value=1.79846e-12	frequency=2.809e-01	ks_quality_p_value=1	major_base=G	major_cov=50/14	major_frequency=7.191e-01	minor_base=T	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.809e-01	polymorphism_score=19.7	prediction=polymorphism	ref_cov=50/14	total_cov=50/39
RA	4091	.	1	312051	0	C	T	consensus_score=159.5	frequency=1	major_base=T	major_cov=34/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/25
RA	4092	.	1	312602	0	C	T	consensus_score=231.2	frequency=1	major_base=T	major_cov=47/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/36
RA	4093	.	1	313145	0	C	T	consensus_score=212.0	frequency=1	major_base=T	major_cov=35/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/43
RA	4094	.	1	314283	0	T	C	consensus_score=226.8	frequency=1	major_base=C	major_cov=38/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/45
RA	4095	.	1	314512	0	C	T	consensus_score=177.4	frequency=1	major_base=T	major_cov=29/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/37
RA	4096	.	1	315974	0	G	A	consensus_score=218.4	frequency=1	major_base=A	major_cov=39/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/41
RA	4097	.	1	320390	0	T	C	consensus_score=200.0	frequency=1	major_base=C	major_cov=39/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/32
RA	4098	.	1	322890	0	T	C	consensus_score=241.8	frequency=1	major_base=C	major_cov=43/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/45
RA	4099	.	1	326152	0	T	G	consensus_score=143.7	frequency=1	major_base=G	major_cov=21/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/31
RA	4100	.	1	327084	0	T	C	consensus_score=135.8	frequency=1	major_base=C	major_cov=27/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/21
RA	4101	.	1	327600	0	G	A	consensus_score=151.5	frequency=1	major_base=A	major_cov=31/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/26
RA	4102	.	1	327734	0	A	G	consensus_score=165.2	frequency=1	major_base=G	major_cov=35/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/26
RA	4103	.	1	329144	0	T	C	consensus_score=191.3	frequency=1	major_base=C	major_cov=36/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/34
RA	4104	.	1	330290	0	A	G	consensus_score=58.7	frequency=1	major_base=G	major_cov=8/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/14
RA	4105	.	1	331479	0	G	T	consensus_score=167.5	frequency=1	major_base=T	major_cov=37/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/25
RA	4106	.	1	331816	0	C	T	consensus_score=215.5	frequency=1	major_base=T	major_cov=47/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/32
RA	4107	.	1	332713	0	C	T	consensus_score=113.5	frequency=1	major_base=T	major_cov=22/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/21
RA	4108	.	1	337276	0	G	A	consensus_score=150.1	frequency=1	major_base=A	major_cov=30/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/26
RA	4109	.	1	338450	0	A	G	consensus_score=182.2	frequency=1	major_base=G	major_cov=31/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/36
RA	4110	.	1	338719	0	C	T	consensus_score=118.1	frequency=1	major_base=T	major_cov=21/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/21
RA	4111	.	1	343716	0	G	A	consensus_score=156.0	frequency=1	major_base=A	major_cov=32/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/26
RA	4112	.	1	354552	0	A	C	bias_e_value=1.23319e-06	bias_p_value=5.86381e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=135.9	fisher_strand_p_value=1.79592e-14	frequency=3.483e-01	ks_quality_p_value=1	major_base=A	major_cov=46/12	major_frequency=6.517e-01	minor_base=C	minor_cov=0/31	new_cov=0/31	polymorphism_frequency=3.483e-01	polymorphism_score=13.7	prediction=polymorphism	ref_cov=46/12	total_cov=46/43
RA	4113	.	1	356064	0	C	T	consensus_score=174.6	frequency=1	major_base=T	major_cov=36/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/26
RA	4114	.	1	363098	0	A	G	consensus_score=242.8	frequency=1	major_base=G	major_cov=55/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/29
RA	4115	.	1	365918	0	T	C	consensus_score=114.6	frequency=1	major_base=C	major_cov=26/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/16
RA	4116	.	1	366717	0	T	C	consensus_score=161.3	frequency=1	major_base=C	major_cov=28/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/31
RA	4117	.	1	366792	0	C	T	consensus_score=223.6	frequency=1	major_base=T	major_cov=41/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/39
RA	4118	.	1	368053	0	G	A	consensus_score=264.2	frequency=1	major_base=A	major_cov=48/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/48
RA	4119	.	1	373405	0	C	T	consensus_score=212.4	frequency=1	major_base=T	major_cov=46/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/29
RA	4120	.	1	374949	0	G	A	consensus_score=238.5	frequency=1	major_base=A	major_cov=47/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/40
RA	4121	.	1	383460	0	A	T	bias_e_value=181.037	bias_p_value=8.60829e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=40.1	fisher_strand_p_value=6.66333e-06	frequency=3.667e-01	ks_quality_p_value=1	major_base=A	major_cov=3/16	major_frequency=6.333e-01	minor_base=T	minor_cov=11/0	new_cov=11/0	polymorphism_frequency=3.667e-01	polymorphism_score=11.6	prediction=polymorphism	ref_cov=3/16	total_cov=14/16
RA	4122	.	1	383475	0	A	C	bias_e_value=2091070	bias_p_value=0.994303	consensus_score=98.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.89517	major_base=C	major_cov=23/19	major_frequency=9.767e-01	minor_base=T	minor_cov=1/0	new_cov=23/19	polymorphism_frequency=9.767e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/19
RA	4123	.	1	383525	0	G	A	consensus_score=131.4	frequency=1	major_base=A	major_cov=25/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/24
RA	4124	.	1	385410	0	A	C	consensus_score=219.4	frequency=1	major_base=C	major_cov=47/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/32
RA	4125	.	1	386052	0	C	T	consensus_score=217.8	frequency=1	major_base=T	major_cov=36/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/45
RA	4126	.	1	388248	0	C	T	consensus_score=187.3	frequency=1	major_base=T	major_cov=30/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/36
RA	4127	.	1	394220	0	G	C	consensus_score=215.9	frequency=1	major_base=C	major_cov=44/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/35
RA	4128	.	1	395805	0	C	T	consensus_score=226.9	frequency=1	major_base=T	major_cov=36/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/47
RA	4129	.	1	396201	0	A	G	consensus_score=250.3	frequency=1	major_base=G	major_cov=38/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/52
RA	4130	.	1	397951	0	C	T	bias_e_value=2103030	bias_p_value=0.999988	consensus_score=209.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.995074	major_base=T	major_cov=45/35	major_frequency=9.877e-01	minor_base=G	minor_cov=1/0	new_cov=45/35	polymorphism_frequency=9.877e-01	polymorphism_score=-5.9	prediction=consensus	ref_cov=0/0	total_cov=46/35
RA	4131	.	1	401145	0	A	C	bias_e_value=1.2297e-07	bias_p_value=5.84721e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=186.9	fisher_strand_p_value=1.66938e-15	frequency=2.788e-01	ks_quality_p_value=1	major_base=A	major_cov=61/14	major_frequency=7.212e-01	minor_base=C	minor_cov=0/29	new_cov=0/29	polymorphism_frequency=2.788e-01	polymorphism_score=21.1	prediction=polymorphism	ref_cov=61/14	total_cov=61/43
RA	4132	.	1	401834	0	A	T	bias_e_value=7.09188e-06	bias_p_value=3.37217e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=148.1	fisher_strand_p_value=1.09329e-13	frequency=3.176e-01	ks_quality_p_value=1	major_base=A	major_cov=47/11	major_frequency=6.824e-01	minor_base=T	minor_cov=0/27	new_cov=0/27	polymorphism_frequency=3.176e-01	polymorphism_score=21.4	prediction=polymorphism	ref_cov=47/11	total_cov=47/39
RA	4133	.	1	401876	0	A	T	bias_e_value=0.0326119	bias_p_value=1.55069e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=152.5	fisher_strand_p_value=7.02418e-10	frequency=2.561e-01	ks_quality_p_value=1	major_base=A	major_cov=45/16	major_frequency=7.439e-01	minor_base=T	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=2.561e-01	polymorphism_score=13.6	prediction=polymorphism	ref_cov=45/16	total_cov=45/38
RA	4134	.	1	401905	0	A	T	bias_e_value=9.31047e-09	bias_p_value=4.42711e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=107.2	fisher_strand_p_value=1.17492e-16	frequency=4.026e-01	ks_quality_p_value=1	major_base=A	major_cov=41/5	major_frequency=5.974e-01	minor_base=T	minor_cov=0/31	new_cov=0/31	polymorphism_frequency=4.026e-01	polymorphism_score=33.4	prediction=polymorphism	ref_cov=41/5	total_cov=41/36
RA	4135	.	1	403798	0	C	G	consensus_score=218.0	frequency=1	major_base=G	major_cov=39/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/38
RA	4136	.	1	405176	0	C	A	consensus_score=229.6	frequency=1	major_base=A	major_cov=37/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/45
RA	4137	.	1	405368	0	T	.	consensus_score=316.9	frequency=1	major_base=.	major_cov=42/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/33
RA	4138	.	1	406063	0	C	T	bias_e_value=2.23487	bias_p_value=1.06268e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=89.7	fisher_strand_p_value=6.09838e-08	frequency=3.171e-01	ks_quality_p_value=0.98874	major_base=C	major_cov=23/33	major_frequency=6.829e-01	minor_base=T	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=3.171e-01	polymorphism_score=15.3	prediction=polymorphism	ref_cov=23/33	total_cov=49/33
RA	4139	.	1	408773	0	G	T	consensus_score=272.2	frequency=1	major_base=T	major_cov=59/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/37
RA	4140	.	1	409221	0	C	T	consensus_score=207.1	frequency=1	major_base=T	major_cov=31/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/42
RA	4141	.	1	415076	0	T	G	consensus_score=278.3	frequency=1	major_base=G	major_cov=48/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/49
RA	4142	.	1	418424	0	A	G	consensus_score=284.3	frequency=1	major_base=G	major_cov=48/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/50
RA	4143	.	1	418601	0	T	A	bias_e_value=0.192015	bias_p_value=9.13027e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=127.7	fisher_strand_p_value=4.51646e-09	frequency=2.615e-01	ks_quality_p_value=1	major_base=T	major_cov=38/10	major_frequency=7.385e-01	minor_base=A	minor_cov=0/17	new_cov=0/17	polymorphism_frequency=2.615e-01	polymorphism_score=12.5	prediction=polymorphism	ref_cov=38/10	total_cov=38/27
RA	4144	.	1	425421	0	C	G	bias_e_value=3.16153	bias_p_value=1.5033e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=114.9	fisher_strand_p_value=8.71175e-08	frequency=2.295e-01	ks_quality_p_value=1	major_base=C	major_cov=10/37	major_frequency=7.705e-01	minor_base=G	minor_cov=14/0	new_cov=14/0	polymorphism_frequency=2.295e-01	polymorphism_score=12.8	prediction=polymorphism	ref_cov=10/37	total_cov=25/37
RA	4145	.	1	425430	0	C	T	bias_e_value=4.37112	bias_p_value=2.07846e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=96.5	fisher_strand_p_value=1.22899e-07	frequency=2.203e-01	ks_quality_p_value=1	major_base=C	major_cov=9/37	major_frequency=7.797e-01	minor_base=T	minor_cov=13/0	new_cov=13/0	polymorphism_frequency=2.203e-01	polymorphism_score=13.2	prediction=polymorphism	ref_cov=9/37	total_cov=22/37
RA	4146	.	1	425449	0	A	T	bias_e_value=3.91396	bias_p_value=1.86108e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=131.7	fisher_strand_p_value=1.09287e-07	frequency=2.063e-01	ks_quality_p_value=1	major_base=A	major_cov=10/40	major_frequency=7.937e-01	minor_base=T	minor_cov=13/0	new_cov=13/0	polymorphism_frequency=2.063e-01	polymorphism_score=24.2	prediction=polymorphism	ref_cov=10/40	total_cov=24/40
RA	4147	.	1	425460	0	A	T	bias_e_value=20.3428	bias_p_value=9.67295e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=138.9	fisher_strand_p_value=6.33369e-07	frequency=2.000e-01	ks_quality_p_value=1	major_base=A	major_cov=13/39	major_frequency=8.000e-01	minor_base=T	minor_cov=13/0	new_cov=13/0	polymorphism_frequency=2.000e-01	polymorphism_score=10.3	prediction=polymorphism	ref_cov=13/39	total_cov=26/39
RA	4148	.	1	429017	0	C	T	consensus_score=321.4	frequency=1	major_base=T	major_cov=59/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/56
RA	4149	.	1	429305	0	T	C	consensus_score=243.9	frequency=1	major_base=C	major_cov=48/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/41
RA	4150	.	1	429594	0	G	A	bias_e_value=459.765	bias_p_value=0.000218618	consensus_reject=FREQUENCY_CUTOFF	consensus_score=40.3	fisher_strand_p_value=1.83633e-05	frequency=3.962e-01	ks_quality_p_value=1	major_base=G	major_cov=17/15	major_frequency=6.038e-01	minor_base=A	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=3.962e-01	polymorphism_score=15.5	prediction=polymorphism	ref_cov=17/15	total_cov=17/37
RA	4151	.	1	429840	0	G	A	consensus_score=232.9	frequency=1	major_base=A	major_cov=48/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/38
RA	4152	.	1	429869	0	T	C	consensus_score=226.5	frequency=1	major_base=C	major_cov=47/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/32
RA	4153	.	1	429910	0	C	T	consensus_score=224.5	frequency=1	major_base=T	major_cov=53/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/28
RA	4154	.	1	430826	0	T	C	consensus_score=288.5	frequency=1	major_base=C	major_cov=40/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/60
RA	4155	.	1	430829	0	G	A	consensus_score=272.2	frequency=1	major_base=A	major_cov=40/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/60
RA	4156	.	1	433793	0	T	C	consensus_score=313.0	frequency=1	major_base=C	major_cov=45/68	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/68	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/68
RA	4157	.	1	434243	0	C	G	consensus_score=206.4	frequency=1	major_base=G	major_cov=38/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/37
RA	4158	.	1	434309	0	C	T	consensus_score=198.5	frequency=1	major_base=T	major_cov=38/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/36
RA	4159	.	1	434471	0	T	C	consensus_score=338.5	frequency=1	major_base=C	major_cov=59/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/57
RA	4160	.	1	435558	0	T	C	consensus_score=273.2	frequency=1	major_base=C	major_cov=50/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/45
RA	4161	.	1	435690	0	G	A	consensus_score=246.9	frequency=1	major_base=A	major_cov=46/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/41
RA	4162	.	1	435856	0	G	A	consensus_score=139.8	frequency=1	major_base=A	major_cov=32/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/20
RA	4163	.	1	437503	0	A	G	consensus_score=322.3	frequency=1	major_base=G	major_cov=48/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/63
RA	4164	.	1	441505	0	T	C	consensus_score=239.9	frequency=1	major_base=C	major_cov=37/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/51
RA	4165	.	1	443672	0	C	T	consensus_score=216.3	frequency=1	major_base=T	major_cov=40/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/39
RA	4166	.	1	444159	0	C	T	consensus_score=77.8	frequency=1	major_base=T	major_cov=14/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/16
RA	4167	.	1	445214	0	G	A	consensus_score=226.0	frequency=1	major_base=A	major_cov=31/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/49
RA	4168	.	1	445252	0	A	G	consensus_score=222.0	frequency=1	major_base=G	major_cov=30/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/47
RA	4169	.	1	448390	0	A	G	consensus_score=381.7	frequency=1	major_base=G	major_cov=68/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=68/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/62
RA	4170	.	1	449544	0	A	C	consensus_score=213.6	frequency=1	major_base=C	major_cov=37/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/38
RA	4171	.	1	450585	0	C	T	consensus_score=263.7	frequency=1	major_base=T	major_cov=48/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/49
RA	4172	.	1	452172	0	C	T	consensus_score=322.2	frequency=1	major_base=T	major_cov=60/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/57
RA	4173	.	1	452608	0	T	G	consensus_score=287.8	frequency=1	major_base=G	major_cov=49/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/56
RA	4174	.	1	453067	0	T	.	consensus_score=290.2	frequency=1	major_base=.	major_cov=42/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/27
RA	4175	.	1	453800	0	G	A	consensus_score=288.1	frequency=1	major_base=A	major_cov=63/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/42
RA	4176	.	1	455400	0	C	T	consensus_score=340.3	frequency=1	major_base=T	major_cov=66/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/58
RA	4177	.	1	455544	0	A	G	consensus_score=347.5	frequency=1	major_base=G	major_cov=52/70	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/70	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/70
RA	4178	.	1	457788	0	T	C	bias_e_value=2103060	bias_p_value=1	consensus_score=342.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999865	major_base=C	major_cov=59/62	major_frequency=9.918e-01	minor_base=T	minor_cov=0/1	new_cov=59/62	polymorphism_frequency=9.918e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=59/63
RA	4179	.	1	457911	0	G	A	consensus_score=356.0	frequency=1	major_base=A	major_cov=59/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/65
RA	4180	.	1	459423	0	G	A	consensus_score=233.6	frequency=1	major_base=A	major_cov=42/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/44
RA	4181	.	1	460337	0	G	T	bias_e_value=2103060	bias_p_value=1	consensus_score=173.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=29/36	major_frequency=9.559e-01	minor_base=G	minor_cov=1/2	new_cov=29/36	polymorphism_frequency=9.559e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=1/2	total_cov=30/38
RA	4182	.	1	460749	0	T	C	consensus_score=341.7	frequency=1	major_base=C	major_cov=63/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/56
RA	4183	.	1	461359	0	A	C	consensus_score=286.2	frequency=1	major_base=C	major_cov=53/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/49
RA	4184	.	1	461762	0	G	A	bias_e_value=2103060	bias_p_value=1	consensus_score=316.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=55/56	major_frequency=9.911e-01	minor_base=G	minor_cov=0/1	new_cov=55/56	polymorphism_frequency=9.911e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=55/57
RA	4185	.	1	465357	0	C	T	bias_e_value=2090910	bias_p_value=0.994223	consensus_score=383.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.894449	major_base=T	major_cov=72/63	major_frequency=9.926e-01	minor_base=C	minor_cov=1/0	new_cov=72/63	polymorphism_frequency=9.926e-01	polymorphism_score=-5.5	prediction=consensus	ref_cov=1/0	total_cov=73/63
RA	4186	.	1	466494	0	A	G	bias_e_value=1754180	bias_p_value=0.834112	consensus_score=400.6	fisher_strand_p_value=0.482517	frequency=1	ks_quality_p_value=0.999902	major_base=G	major_cov=68/74	major_frequency=9.930e-01	minor_base=C	minor_cov=1/0	new_cov=68/74	polymorphism_frequency=9.930e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=69/74
RA	4187	.	1	466708	0	C	T	consensus_score=314.3	frequency=1	major_base=T	major_cov=51/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/60
RA	4188	.	1	467563	0	C	T	consensus_score=268.0	frequency=1	major_base=T	major_cov=45/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/48
RA	4189	.	1	468139	0	T	G	consensus_score=257.8	frequency=1	major_base=G	major_cov=44/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/49
RA	4190	.	1	469700	0	C	T	consensus_score=368.6	frequency=1	major_base=T	major_cov=67/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=67/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/66
RA	4191	.	1	469773	0	A	G	consensus_score=348.4	frequency=1	major_base=G	major_cov=67/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=67/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/58
RA	4192	.	1	470685	0	A	G	consensus_score=405.2	frequency=1	major_base=G	major_cov=59/85	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/85	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/85
RA	4193	.	1	472413	0	A	G	consensus_score=271.8	frequency=1	major_base=G	major_cov=35/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/62
RA	4194	.	1	474606	0	A	C	consensus_score=400.1	frequency=1	major_base=C	major_cov=68/69	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=68/69	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/69
RA	4195	.	1	476834	0	C	T	consensus_score=239.9	frequency=1	major_base=T	major_cov=49/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/38
RA	4196	.	1	477841	0	T	G	consensus_score=322.8	frequency=1	major_base=G	major_cov=53/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/60
RA	4197	.	1	479151	0	T	C	consensus_score=99.3	frequency=1	major_base=C	major_cov=21/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/15
RA	4198	.	1	481102	0	A	G	consensus_score=233.7	frequency=1	major_base=G	major_cov=42/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/43
RA	4199	.	1	481808	0	A	G	consensus_score=52.5	frequency=1	major_base=G	major_cov=15/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/6
RA	4200	.	1	482207	0	A	G	consensus_score=190.3	frequency=1	major_base=G	major_cov=38/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/34
RA	4201	.	1	482652	0	A	G	consensus_score=173.3	frequency=1	major_base=G	major_cov=34/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/30
RA	4202	.	1	482817	0	A	G	consensus_score=232.4	frequency=1	major_base=G	major_cov=40/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/42
RA	4203	.	1	483847	0	G	A	consensus_score=202.9	frequency=1	major_base=A	major_cov=34/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/40
RA	4204	.	1	484481	0	G	A	consensus_score=228.4	frequency=1	major_base=A	major_cov=36/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/49
RA	4205	.	1	484667	0	G	T	consensus_score=192.0	frequency=1	major_base=T	major_cov=28/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/39
RA	4206	.	1	484675	0	C	T	consensus_score=176.6	frequency=1	major_base=T	major_cov=26/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/39
RA	4207	.	1	484825	0	A	G	consensus_score=205.7	frequency=1	major_base=G	major_cov=37/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/36
RA	4208	.	1	484887	0	T	C	consensus_score=192.6	frequency=1	major_base=C	major_cov=32/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/39
RA	4209	.	1	484975	0	C	T	consensus_score=197.8	frequency=1	major_base=T	major_cov=39/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/33
RA	4210	.	1	485939	0	T	A	consensus_score=168.7	frequency=1	major_base=A	major_cov=23/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/39
RA	4211	.	1	489319	0	T	C	consensus_score=161.2	frequency=1	major_base=C	major_cov=31/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/29
RA	4212	.	1	493778	0	C	T	consensus_score=125.1	frequency=1	major_base=T	major_cov=18/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/29
RA	4213	.	1	495890	0	A	T	consensus_score=133.5	frequency=1	major_base=T	major_cov=27/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/23
RA	4214	.	1	497158	0	T	C	consensus_score=135.0	frequency=1	major_base=C	major_cov=21/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/27
RA	4215	.	1	497371	0	C	G	consensus_score=125.4	frequency=1	major_base=G	major_cov=22/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/25
RA	4216	.	1	498008	0	G	A	consensus_score=203.3	frequency=1	major_base=A	major_cov=40/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/32
RA	4217	.	1	498844	0	G	A	consensus_score=127.5	frequency=1	major_base=A	major_cov=24/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/23
RA	4218	.	1	499971	0	G	A	consensus_score=48.3	frequency=1	major_base=A	major_cov=10/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/9
RA	4219	.	1	501871	0	T	C	consensus_score=74.8	frequency=1	major_base=C	major_cov=15/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/12
RA	4220	.	1	507676	0	C	T	consensus_score=154.4	frequency=1	major_base=T	major_cov=36/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/22
RA	4221	.	1	508961	0	T	C	bias_e_value=1717560	bias_p_value=0.816698	consensus_score=180.2	fisher_strand_p_value=0.462687	frequency=1	ks_quality_p_value=0.99279	major_base=C	major_cov=30/36	major_frequency=9.851e-01	minor_base=T	minor_cov=1/0	new_cov=30/36	polymorphism_frequency=9.851e-01	polymorphism_score=-5.0	prediction=consensus	ref_cov=1/0	total_cov=31/36
RA	4222	.	1	513783	0	A	G	consensus_score=190.5	frequency=1	major_base=G	major_cov=33/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/37
RA	4223	.	1	514949	0	A	G	consensus_score=233.6	frequency=1	major_base=G	major_cov=41/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/42
RA	4224	.	1	515422	0	C	A	bias_e_value=2051330	bias_p_value=0.975404	consensus_score=171.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.786565	major_base=A	major_cov=24/39	major_frequency=9.844e-01	minor_base=C	minor_cov=0/1	new_cov=24/39	polymorphism_frequency=9.844e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=0/1	total_cov=24/40
RA	4225	.	1	516082	0	C	T	consensus_score=177.8	frequency=1	major_base=T	major_cov=34/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/32
RA	4226	.	1	516290	0	T	C	consensus_score=211.5	frequency=1	major_base=C	major_cov=31/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/43
RA	4227	.	1	516770	0	A	G	consensus_score=224.8	frequency=1	major_base=G	major_cov=43/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/36
RA	4228	.	1	516973	0	A	T	bias_e_value=0.0151797	bias_p_value=7.21791e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=123.4	fisher_strand_p_value=3.15512e-10	frequency=2.714e-01	ks_quality_p_value=1	major_base=A	major_cov=41/10	major_frequency=7.286e-01	minor_base=T	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=2.714e-01	polymorphism_score=10.9	prediction=polymorphism	ref_cov=41/10	total_cov=41/29
RA	4229	.	1	517006	0	G	A	bias_e_value=7.91988e-06	bias_p_value=3.76589e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=82.5	fisher_strand_p_value=1.2255e-13	frequency=3.382e-01	ks_quality_p_value=0.999972	major_base=G	major_cov=40/5	major_frequency=6.618e-01	minor_base=A	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=3.382e-01	polymorphism_score=15.2	prediction=polymorphism	ref_cov=40/5	total_cov=40/28
RA	4230	.	1	517011	0	G	A	bias_e_value=7.9201e-06	bias_p_value=3.76599e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=82.5	fisher_strand_p_value=1.2255e-13	frequency=3.382e-01	ks_quality_p_value=1	major_base=G	major_cov=40/5	major_frequency=6.618e-01	minor_base=A	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=3.382e-01	polymorphism_score=15.1	prediction=polymorphism	ref_cov=40/5	total_cov=40/28
RA	4231	.	1	517507	0	C	T	consensus_score=229.8	frequency=1	major_base=T	major_cov=41/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/44
RA	4232	.	1	518126	0	T	C	consensus_score=192.5	frequency=1	major_base=C	major_cov=31/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/43
RA	4233	.	1	518471	0	T	G	bias_e_value=2132.28	bias_p_value=0.00101389	consensus_reject=FREQUENCY_CUTOFF	consensus_score=74.1	fisher_strand_p_value=9.92252e-05	frequency=3.396e-01	ks_quality_p_value=1	major_base=T	major_cov=11/24	major_frequency=6.604e-01	minor_base=G	minor_cov=16/2	new_cov=16/2	polymorphism_frequency=3.396e-01	polymorphism_score=14.1	prediction=polymorphism	ref_cov=11/24	total_cov=27/26
RA	4234	.	1	519267	0	A	G	bias_e_value=2103060	bias_p_value=1	consensus_score=177.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999574	major_base=G	major_cov=36/32	major_frequency=9.855e-01	minor_base=A	minor_cov=1/0	new_cov=36/32	polymorphism_frequency=9.855e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=37/32
RA	4235	.	1	519975	0	C	T	consensus_score=206.9	frequency=1	major_base=T	major_cov=37/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/40
RA	4236	.	1	522666	0	A	G	consensus_score=284.2	frequency=1	major_base=G	major_cov=58/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/45
RA	4237	.	1	523546	0	G	A	bias_e_value=4.30235e-05	bias_p_value=2.04576e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=185.1	fisher_strand_p_value=7.05939e-13	frequency=2.243e-01	ks_quality_p_value=1	major_base=G	major_cov=18/65	major_frequency=7.757e-01	minor_base=A	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.243e-01	polymorphism_score=12.4	prediction=polymorphism	ref_cov=18/65	total_cov=42/65
RA	4238	.	1	523555	0	C	T	bias_e_value=2.27951e-05	bias_p_value=1.0839e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=171.4	fisher_strand_p_value=3.65727e-13	frequency=2.336e-01	ks_quality_p_value=1	major_base=C	major_cov=18/64	major_frequency=7.664e-01	minor_base=T	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.336e-01	polymorphism_score=10.9	prediction=polymorphism	ref_cov=18/64	total_cov=43/64
RA	4239	.	1	523577	0	A	T	bias_e_value=0.00631012	bias_p_value=3.00045e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=229.2	fisher_strand_p_value=1.26102e-10	frequency=2.054e-01	ks_quality_p_value=1	major_base=A	major_cov=26/63	major_frequency=7.946e-01	minor_base=T	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.054e-01	polymorphism_score=15.7	prediction=polymorphism	ref_cov=26/63	total_cov=49/63
RA	4240	.	1	524065	0	A	G	consensus_score=220.8	frequency=1	major_base=G	major_cov=33/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/46
RA	4241	.	1	524624	0	T	G	consensus_score=275.6	frequency=1	major_base=G	major_cov=47/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/54
RA	4242	.	1	525285	0	T	A	consensus_score=247.1	frequency=1	major_base=A	major_cov=34/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/56
RA	4243	.	1	525484	0	C	T	consensus_score=164.0	frequency=1	major_base=T	major_cov=23/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/38
RA	4244	.	1	528542	0	T	G	consensus_score=214.5	frequency=1	major_base=G	major_cov=42/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/35
RA	4245	.	1	528601	0	A	G	bias_e_value=867995	bias_p_value=0.41273	consensus_score=216.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.138718	major_base=G	major_cov=44/36	major_frequency=9.877e-01	minor_base=A	minor_cov=1/0	new_cov=44/36	polymorphism_frequency=9.877e-01	polymorphism_score=-5.5	prediction=consensus	ref_cov=1/0	total_cov=45/36
RA	4246	.	1	529589	0	A	T	consensus_score=165.3	frequency=1	major_base=T	major_cov=25/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/37
RA	4247	.	1	529965	0	A	C	consensus_score=180.4	frequency=1	major_base=C	major_cov=31/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/35
RA	4248	.	1	530249	0	C	T	consensus_score=234.7	frequency=1	major_base=T	major_cov=55/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/28
RA	4249	.	1	531234	0	T	G	consensus_score=217.3	frequency=1	major_base=G	major_cov=44/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/34
RA	4250	.	1	533309	0	T	C	consensus_score=259.0	frequency=1	major_base=C	major_cov=50/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/44
RA	4251	.	1	533647	0	G	T	consensus_score=186.3	frequency=1	major_base=T	major_cov=33/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/33
RA	4252	.	1	533778	0	G	A	consensus_score=242.1	frequency=1	major_base=A	major_cov=41/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/48
RA	4253	.	1	534395	0	A	G	consensus_score=27.5	frequency=1	major_base=G	major_cov=7/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/5
RA	4254	.	1	535347	0	G	A	consensus_score=42.9	frequency=1	major_base=A	major_cov=9/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/9
RA	4255	.	1	536499	0	C	G	consensus_score=121.7	frequency=1	major_base=G	major_cov=20/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/23
RA	4256	.	1	536679	0	A	.	consensus_score=105.4	frequency=1	major_base=.	major_cov=17/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/9
RA	4257	.	1	537554	0	G	A	consensus_score=288.4	frequency=1	major_base=A	major_cov=51/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/57
RA	4258	.	1	538500	0	G	A	bias_e_value=2103060	bias_p_value=1	consensus_score=229.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=43/44	major_frequency=9.886e-01	minor_base=T	minor_cov=0/1	new_cov=43/44	polymorphism_frequency=9.886e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/45
RA	4259	.	1	538626	0	C	T	consensus_score=185.0	frequency=1	major_base=T	major_cov=38/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/32
RA	4260	.	1	538663	0	A	G	consensus_score=145.8	frequency=1	major_base=G	major_cov=28/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/27
RA	4261	.	1	538691	0	G	A	consensus_score=149.2	frequency=1	major_base=A	major_cov=25/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/30
RA	4262	.	1	538861	0	A	G	consensus_score=193.0	frequency=1	major_base=G	major_cov=31/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/39
RA	4263	.	1	539602	0	C	T	consensus_score=174.2	frequency=1	major_base=T	major_cov=34/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/31
RA	4264	.	1	541059	0	A	G	consensus_score=155.7	frequency=1	major_base=G	major_cov=31/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/26
RA	4265	.	1	543237	0	T	C	consensus_score=231.9	frequency=1	major_base=C	major_cov=40/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/44
RA	4266	.	1	543480	0	C	T	consensus_score=196.4	frequency=1	major_base=T	major_cov=41/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/33
RA	4267	.	1	544311	0	C	T	consensus_score=211.1	frequency=1	major_base=T	major_cov=41/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/36
RA	4268	.	1	544832	0	A	G	consensus_score=151.0	frequency=1	major_base=G	major_cov=19/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/35
RA	4269	.	1	545039	0	A	G	consensus_score=85.2	frequency=1	major_base=G	major_cov=17/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/15
RA	4270	.	1	546362	0	C	T	consensus_score=262.0	frequency=1	major_base=T	major_cov=49/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/48
RA	4271	.	1	546945	0	C	T	consensus_score=238.9	frequency=1	major_base=T	major_cov=36/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/53
RA	4272	.	1	547301	0	A	G	consensus_score=258.2	frequency=1	major_base=G	major_cov=45/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/45
RA	4273	.	1	548621	0	A	C	consensus_score=286.2	frequency=1	major_base=C	major_cov=51/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/49
RA	4274	.	1	549174	0	A	G	consensus_score=157.0	frequency=1	major_base=G	major_cov=26/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/32
RA	4275	.	1	550373	0	C	A	consensus_score=55.3	frequency=1	major_base=A	major_cov=12/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/11
RA	4276	.	1	552354	0	C	T	consensus_score=231.8	frequency=1	major_base=T	major_cov=51/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/33
RA	4277	.	1	552397	0	T	G	consensus_score=243.8	frequency=1	major_base=G	major_cov=56/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/29
RA	4278	.	1	553106	0	C	T	consensus_score=212.6	frequency=1	major_base=T	major_cov=32/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/43
RA	4279	.	1	553108	0	T	C	consensus_score=211.1	frequency=1	major_base=C	major_cov=32/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/43
RA	4280	.	1	554029	0	T	C	consensus_score=252.3	frequency=1	major_base=C	major_cov=48/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/44
RA	4281	.	1	554550	0	C	T	consensus_score=325.3	frequency=1	major_base=T	major_cov=56/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/57
RA	4282	.	1	555241	0	A	G	consensus_score=192.9	frequency=1	major_base=G	major_cov=32/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/37
RA	4283	.	1	556485	0	G	A	consensus_score=251.3	frequency=1	major_base=A	major_cov=48/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/44
RA	4284	.	1	558008	0	T	C	consensus_score=235.5	frequency=1	major_base=C	major_cov=43/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/42
RA	4285	.	1	558391	0	C	T	consensus_score=175.2	frequency=1	major_base=T	major_cov=32/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/33
RA	4286	.	1	559809	0	G	T	consensus_score=211.4	frequency=1	major_base=T	major_cov=40/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/37
RA	4287	.	1	561187	0	T	G	consensus_score=284.1	frequency=1	major_base=G	major_cov=53/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/50
RA	4288	.	1	562686	0	G	A	bias_e_value=2103060	bias_p_value=1	consensus_score=207.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999684	major_base=A	major_cov=37/42	major_frequency=9.875e-01	minor_base=T	minor_cov=0/1	new_cov=37/42	polymorphism_frequency=9.875e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/43
RA	4289	.	1	563213	0	C	T	consensus_score=205.1	frequency=1	major_base=T	major_cov=35/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/40
RA	4290	.	1	564112	0	A	.	consensus_score=282.0	frequency=1	major_base=.	major_cov=33/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/34
RA	4291	.	1	564724	0	T	C	bias_e_value=1722040	bias_p_value=0.818825	consensus_score=209.9	fisher_strand_p_value=0.469136	frequency=1	ks_quality_p_value=0.98499	major_base=C	major_cov=43/37	major_frequency=9.877e-01	minor_base=G	minor_cov=0/1	new_cov=43/37	polymorphism_frequency=9.877e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/38
RA	4292	.	1	565705	0	T	C	consensus_score=245.9	frequency=1	major_base=C	major_cov=43/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/46
RA	4293	.	1	570274	0	G	A	consensus_score=213.2	frequency=1	major_base=A	major_cov=33/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/43
RA	4294	.	1	570731	0	G	A	consensus_score=191.3	frequency=1	major_base=A	major_cov=37/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/34
RA	4295	.	1	570985	0	C	T	consensus_score=214.2	frequency=1	major_base=T	major_cov=31/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/48
RA	4296	.	1	571521	0	A	G	consensus_score=101.3	frequency=1	major_base=G	major_cov=11/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/25
RA	4297	.	1	571746	0	A	G	consensus_score=177.0	frequency=1	major_base=G	major_cov=45/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/22
RA	4298	.	1	571748	0	C	T	consensus_score=190.8	frequency=1	major_base=T	major_cov=45/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/22
RA	4299	.	1	575748	0	G	A	bias_e_value=2103060	bias_p_value=1	consensus_score=189.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=28/46	major_frequency=9.867e-01	minor_base=C	minor_cov=0/1	new_cov=28/46	polymorphism_frequency=9.867e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/47
RA	4300	.	1	576947	0	G	A	consensus_score=196.6	frequency=1	major_base=A	major_cov=30/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/40
RA	4301	.	1	577066	0	A	G	consensus_score=184.3	frequency=1	major_base=G	major_cov=31/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/36
RA	4302	.	1	578653	0	A	.	consensus_score=336.6	frequency=1	major_base=.	major_cov=44/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/35
RA	4303	.	1	578654	0	A	.	consensus_score=336.6	frequency=1	major_base=.	major_cov=44/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/35
RA	4304	.	1	578831	0	C	T	consensus_score=271.5	frequency=1	major_base=T	major_cov=44/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/57
RA	4305	.	1	579250	0	A	G	consensus_score=111.9	frequency=1	major_base=G	major_cov=20/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/20
RA	4306	.	1	579542	0	A	C	consensus_score=157.4	frequency=1	major_base=C	major_cov=30/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/28
RA	4307	.	1	579880	0	T	C	consensus_score=221.2	frequency=1	major_base=C	major_cov=39/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/38
RA	4308	.	1	580350	0	A	G	consensus_score=133.6	frequency=1	major_base=G	major_cov=26/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/21
RA	4309	.	1	581261	0	C	T	consensus_score=212.1	frequency=1	major_base=T	major_cov=43/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/35
RA	4310	.	1	581414	0	G	A	bias_e_value=1767440	bias_p_value=0.840416	consensus_score=145.0	fisher_strand_p_value=0.491228	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=29/27	major_frequency=9.655e-01	minor_base=C	minor_cov=0/2	new_cov=29/27	polymorphism_frequency=9.655e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/30
RA	4311	.	1	582428	0	C	T	consensus_score=220.0	frequency=1	major_base=T	major_cov=45/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/35
RA	4312	.	1	586840	0	C	T	consensus_score=210.9	frequency=1	major_base=T	major_cov=38/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/47
RA	4313	.	1	587207	0	G	A	bias_e_value=1695220	bias_p_value=0.806073	consensus_score=186.0	fisher_strand_p_value=0.445946	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=41/32	major_frequency=9.865e-01	minor_base=G	minor_cov=0/1	new_cov=41/32	polymorphism_frequency=9.865e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=41/33
RA	4314	.	1	587795	0	T	G	consensus_score=225.4	frequency=1	major_base=G	major_cov=55/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/27
RA	4315	.	1	588072	0	C	T	consensus_score=264.0	frequency=1	major_base=T	major_cov=41/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/52
RA	4316	.	1	590886	0	C	A	bias_e_value=1983560	bias_p_value=0.943181	consensus_score=208.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.682423	major_base=A	major_cov=29/46	major_frequency=9.868e-01	minor_base=C	minor_cov=0/1	new_cov=29/46	polymorphism_frequency=9.868e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=0/1	total_cov=29/47
RA	4317	.	1	591092	0	A	G	consensus_score=218.3	frequency=1	major_base=G	major_cov=43/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/35
RA	4318	.	1	592002	0	C	T	consensus_score=274.0	frequency=1	major_base=T	major_cov=44/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/57
RA	4319	.	1	592503	0	C	T	consensus_score=267.5	frequency=1	major_base=T	major_cov=53/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/42
RA	4320	.	1	594257	0	A	G	consensus_score=282.7	frequency=1	major_base=G	major_cov=54/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/49
RA	4321	.	1	595037	0	G	A	consensus_score=205.1	frequency=1	major_base=A	major_cov=32/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/43
RA	4322	.	1	595067	0	A	T	bias_e_value=0.026349	bias_p_value=1.25289e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=172.5	fisher_strand_p_value=5.61838e-10	frequency=2.262e-01	ks_quality_p_value=1	major_base=A	major_cov=15/50	major_frequency=7.738e-01	minor_base=T	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.262e-01	polymorphism_score=13.8	prediction=polymorphism	ref_cov=15/50	total_cov=34/50
RA	4323	.	1	596785	0	T	C	consensus_score=250.0	frequency=1	major_base=C	major_cov=50/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/41
RA	4324	.	1	597850	0	A	G	consensus_score=216.7	frequency=1	major_base=G	major_cov=35/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/42
RA	4325	.	1	601962	0	T	G	consensus_score=254.9	frequency=1	major_base=G	major_cov=47/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/45
RA	4326	.	1	601984	0	T	C	consensus_score=255.2	frequency=1	major_base=C	major_cov=48/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/49
RA	4327	.	1	602801	0	G	T	consensus_score=256.2	frequency=1	major_base=T	major_cov=54/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/39
RA	4328	.	1	603205	0	T	C	consensus_score=250.1	frequency=1	major_base=C	major_cov=48/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/39
RA	4329	.	1	603438	0	C	T	consensus_score=209.3	frequency=1	major_base=T	major_cov=32/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/42
RA	4330	.	1	603658	0	C	T	consensus_score=234.7	frequency=1	major_base=T	major_cov=36/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/50
RA	4331	.	1	603661	0	C	T	consensus_score=229.2	frequency=1	major_base=T	major_cov=36/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/50
RA	4332	.	1	603742	0	C	T	consensus_score=241.8	frequency=1	major_base=T	major_cov=40/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/50
RA	4333	.	1	604869	0	A	G	consensus_score=177.7	frequency=1	major_base=G	major_cov=29/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/32
RA	4334	.	1	609262	0	C	T	consensus_score=201.6	frequency=1	major_base=T	major_cov=36/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/39
RA	4335	.	1	610604	0	C	T	consensus_score=223.9	frequency=1	major_base=T	major_cov=33/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/50
RA	4336	.	1	611087	0	A	G	bias_e_value=2103060	bias_p_value=1	consensus_score=230.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=43/37	major_frequency=9.877e-01	minor_base=C	minor_cov=1/0	new_cov=43/37	polymorphism_frequency=9.877e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/37
RA	4337	.	1	611267	0	C	T	consensus_score=232.7	frequency=1	major_base=T	major_cov=39/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/43
RA	4338	.	1	611877	0	A	C	consensus_score=245.8	frequency=1	major_base=C	major_cov=36/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/50
RA	4339	.	1	612050	0	C	T	consensus_score=210.9	frequency=1	major_base=T	major_cov=36/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/43
RA	4340	.	1	614240	0	G	A	consensus_score=214.4	frequency=1	major_base=A	major_cov=39/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/38
RA	4341	.	1	615629	0	A	G	consensus_score=170.2	frequency=1	major_base=G	major_cov=38/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/25
RA	4342	.	1	616411	0	A	G	consensus_score=236.4	frequency=1	major_base=G	major_cov=48/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/35
RA	4343	.	1	617534	1	.	T	consensus_score=132.7	frequency=1	major_base=T	major_cov=22/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/28
RA	4344	.	1	618805	0	A	G	consensus_score=155.2	frequency=1	major_base=G	major_cov=25/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/32
RA	4345	.	1	619324	0	C	T	consensus_score=212.2	frequency=1	major_base=T	major_cov=30/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/49
RA	4346	.	1	624477	0	T	C	consensus_score=211.9	frequency=1	major_base=C	major_cov=43/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/33
RA	4347	.	1	625719	0	A	C	consensus_score=133.9	frequency=1	major_base=C	major_cov=24/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/24
RA	4348	.	1	625828	0	A	T	bias_e_value=0.000906865	bias_p_value=4.31213e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=94.3	fisher_strand_p_value=1.67037e-11	frequency=3.091e-01	ks_quality_p_value=1	major_base=A	major_cov=35/3	major_frequency=6.909e-01	minor_base=T	minor_cov=0/17	new_cov=0/17	polymorphism_frequency=3.091e-01	polymorphism_score=12.3	prediction=polymorphism	ref_cov=35/3	total_cov=35/20
RA	4349	.	1	625930	0	T	C	consensus_score=182.9	frequency=1	major_base=C	major_cov=36/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/31
RA	4350	.	1	626017	0	T	C	consensus_score=189.5	frequency=1	major_base=C	major_cov=29/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/38
RA	4351	.	1	627198	0	A	C	consensus_score=277.0	frequency=1	major_base=C	major_cov=54/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/41
RA	4352	.	1	627830	0	T	C	consensus_score=185.3	frequency=1	major_base=C	major_cov=33/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/32
RA	4353	.	1	629559	0	T	C	consensus_score=262.5	frequency=1	major_base=C	major_cov=44/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/54
RA	4354	.	1	629609	0	A	G	consensus_score=257.6	frequency=1	major_base=G	major_cov=45/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/50
RA	4355	.	1	630219	0	C	T	consensus_score=42.9	frequency=1	major_base=T	major_cov=10/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/8
RA	4356	.	1	630268	0	T	C	consensus_score=61.2	frequency=1	major_base=C	major_cov=15/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/8
RA	4357	.	1	630474	0	T	G	bias_e_value=8.94971e-06	bias_p_value=4.25557e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=56.4	fisher_strand_p_value=1.39053e-13	frequency=4.923e-01	ks_quality_p_value=1	major_base=T	major_cov=5/28	major_frequency=5.077e-01	minor_base=G	minor_cov=32/0	new_cov=32/0	polymorphism_frequency=4.923e-01	polymorphism_score=24.9	prediction=polymorphism	ref_cov=5/28	total_cov=38/28
RA	4358	.	1	630504	0	G	A	bias_e_value=11.0007	bias_p_value=5.23079e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=101.9	fisher_strand_p_value=3.31704e-07	frequency=2.821e-01	ks_quality_p_value=0.989977	major_base=G	major_cov=23/33	major_frequency=7.179e-01	minor_base=A	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.821e-01	polymorphism_score=17.7	prediction=polymorphism	ref_cov=23/33	total_cov=46/33
RA	4359	.	1	632728	0	A	G	consensus_score=161.1	frequency=1	major_base=G	major_cov=27/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/31
RA	4360	.	1	634175	0	G	A	consensus_score=180.4	frequency=1	major_base=A	major_cov=26/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/38
RA	4361	.	1	634961	0	G	A	consensus_score=281.4	frequency=1	major_base=A	major_cov=59/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/43
RA	4362	.	1	635321	0	C	A	consensus_score=217.7	frequency=1	major_base=A	major_cov=30/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/50
RA	4363	.	1	635971	0	C	A	consensus_score=286.5	frequency=1	major_base=A	major_cov=56/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/50
RA	4364	.	1	638287	0	A	G	consensus_score=249.9	frequency=1	major_base=G	major_cov=55/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/35
RA	4365	.	1	638669	0	A	G	consensus_score=252.0	frequency=1	major_base=G	major_cov=45/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/42
RA	4366	.	1	639653	0	A	C	bias_e_value=0.000420412	bias_p_value=1.99905e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=141.2	fisher_strand_p_value=7.58881e-12	frequency=2.676e-01	ks_quality_p_value=0.98976	major_base=A	major_cov=45/7	major_frequency=7.324e-01	minor_base=C	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=2.676e-01	polymorphism_score=11.2	prediction=polymorphism	ref_cov=45/7	total_cov=45/28
RA	4367	.	1	639677	0	T	A	bias_e_value=0.000192792	bias_p_value=9.16725e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=142.3	fisher_strand_p_value=3.34276e-12	frequency=2.429e-01	ks_quality_p_value=1	major_base=T	major_cov=48/5	major_frequency=7.571e-01	minor_base=A	minor_cov=0/17	new_cov=0/17	polymorphism_frequency=2.429e-01	polymorphism_score=10.4	prediction=polymorphism	ref_cov=48/5	total_cov=48/22
RA	4368	.	1	639915	0	T	G	consensus_score=250.8	frequency=1	major_base=G	major_cov=50/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/41
RA	4369	.	1	642734	0	G	A	consensus_score=108.4	frequency=1	major_base=A	major_cov=24/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/17
RA	4370	.	1	643958	0	C	T	consensus_score=217.1	frequency=1	major_base=T	major_cov=34/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/43
RA	4371	.	1	644112	0	G	A	consensus_score=205.5	frequency=1	major_base=A	major_cov=41/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/36
RA	4372	.	1	645633	0	C	A	consensus_score=213.9	frequency=1	major_base=A	major_cov=28/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/50
RA	4373	.	1	645673	0	G	A	bias_e_value=1810920	bias_p_value=0.861089	consensus_score=222.8	fisher_strand_p_value=0.521605	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=31/48	major_frequency=9.753e-01	minor_base=G	minor_cov=0/2	new_cov=31/48	polymorphism_frequency=9.753e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/2	total_cov=31/50
RA	4374	.	1	645748	0	T	C	bias_e_value=2103060	bias_p_value=1	consensus_score=204.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=28/48	major_frequency=9.870e-01	minor_base=T	minor_cov=0/1	new_cov=28/48	polymorphism_frequency=9.870e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=28/49
RA	4375	.	1	646212	0	G	A	consensus_score=175.0	frequency=1	major_base=A	major_cov=29/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/36
RA	4376	.	1	649383	0	T	C	consensus_score=33.3	frequency=1	major_base=C	major_cov=4/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/9
RA	4377	.	1	649813	0	A	G	consensus_score=255.0	frequency=1	major_base=G	major_cov=49/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/38
RA	4378	.	1	650579	0	G	A	consensus_score=129.4	frequency=1	major_base=A	major_cov=26/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/21
RA	4379	.	1	651233	0	C	T	consensus_score=233.7	frequency=1	major_base=T	major_cov=39/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/47
RA	4380	.	1	651280	0	G	A	bias_e_value=0.515155	bias_p_value=2.44955e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=120.5	fisher_strand_p_value=1.27742e-08	frequency=2.250e-01	ks_quality_p_value=1	major_base=G	major_cov=17/45	major_frequency=7.750e-01	minor_base=A	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.250e-01	polymorphism_score=13.1	prediction=polymorphism	ref_cov=17/45	total_cov=36/46
RA	4381	.	1	651306	0	T	G	bias_e_value=125466	bias_p_value=0.0596588	consensus_score=199.2	fisher_strand_p_value=0.0108602	frequency=1	ks_quality_p_value=0.993523	major_base=G	major_cov=29/47	major_frequency=9.383e-01	minor_base=.	minor_cov=5/0	new_cov=29/47	polymorphism_frequency=9.383e-01	polymorphism_score=2.8	prediction=consensus	ref_cov=1/0	total_cov=35/47
RA	4382	.	1	651326	0	C	T	bias_e_value=0.00285441	bias_p_value=1.35727e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=128.0	fisher_strand_p_value=5.51255e-11	frequency=2.558e-01	ks_quality_p_value=1	major_base=C	major_cov=15/49	major_frequency=7.442e-01	minor_base=T	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.558e-01	polymorphism_score=11.2	prediction=polymorphism	ref_cov=15/49	total_cov=37/49
RA	4383	.	1	651725	0	C	T	consensus_score=191.0	frequency=1	major_base=T	major_cov=29/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/42
RA	4384	.	1	652036	0	T	C	consensus_score=191.8	frequency=1	major_base=C	major_cov=36/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/34
RA	4385	.	1	652520	0	T	C	bias_e_value=1770310	bias_p_value=0.841779	consensus_score=200.1	fisher_strand_p_value=0.493151	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=37/35	major_frequency=9.863e-01	minor_base=T	minor_cov=0/1	new_cov=37/35	polymorphism_frequency=9.863e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=37/36
RA	4386	.	1	652780	0	C	T	consensus_score=259.0	frequency=1	major_base=T	major_cov=48/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/46
RA	4387	.	1	653354	0	C	T	consensus_score=227.2	frequency=1	major_base=T	major_cov=44/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/39
RA	4388	.	1	653674	0	C	T	bias_e_value=1626160	bias_p_value=0.773235	consensus_score=124.5	fisher_strand_p_value=0.407407	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=21/32	major_frequency=9.815e-01	minor_base=C	minor_cov=1/0	new_cov=21/32	polymorphism_frequency=9.815e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=22/32
RA	4389	.	1	653823	0	G	T	consensus_score=211.5	frequency=1	major_base=T	major_cov=41/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/35
RA	4390	.	1	654339	0	A	G	consensus_score=206.8	frequency=1	major_base=G	major_cov=27/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/49
RA	4391	.	1	654629	0	A	G	consensus_score=321.6	frequency=1	major_base=G	major_cov=67/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=67/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/46
RA	4392	.	1	655617	0	G	C	consensus_score=224.8	frequency=1	major_base=C	major_cov=39/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/43
RA	4393	.	1	655835	0	C	G	consensus_score=246.6	frequency=1	major_base=G	major_cov=44/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/44
RA	4394	.	1	657938	0	A	G	consensus_score=255.2	frequency=1	major_base=G	major_cov=54/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/36
RA	4395	.	1	659761	0	C	T	consensus_score=214.8	frequency=1	major_base=T	major_cov=44/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/33
RA	4396	.	1	662958	0	A	G	consensus_score=279.2	frequency=1	major_base=G	major_cov=50/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/50
RA	4397	.	1	664239	0	T	C	consensus_score=251.2	frequency=1	major_base=C	major_cov=42/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/49
RA	4398	.	1	664668	0	C	T	consensus_score=219.9	frequency=1	major_base=T	major_cov=26/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/50
RA	4399	.	1	665830	0	C	T	consensus_score=224.2	frequency=1	major_base=T	major_cov=44/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/38
RA	4400	.	1	666383	0	C	T	consensus_score=260.8	frequency=1	major_base=T	major_cov=44/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/52
RA	4401	.	1	668483	0	T	C	consensus_score=214.6	frequency=1	major_base=C	major_cov=32/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/43
RA	4402	.	1	669589	0	T	A	consensus_score=30.5	frequency=1	major_base=A	major_cov=4/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/9
RA	4403	.	1	669616	1	.	A	consensus_score=47.0	frequency=1	major_base=A	major_cov=11/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/8
RA	4404	.	1	670055	0	A	G	consensus_score=110.5	frequency=1	major_base=G	major_cov=18/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/22
RA	4405	.	1	671693	0	G	A	bias_e_value=2094790	bias_p_value=0.996069	consensus_score=570.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.912651	major_base=A	major_cov=100/110	major_frequency=9.953e-01	minor_base=.	minor_cov=0/1	new_cov=100/110	polymorphism_frequency=9.953e-01	polymorphism_score=-3.9	prediction=consensus	ref_cov=0/0	total_cov=100/111
RA	4406	.	1	676381	0	T	G	consensus_score=209.0	frequency=1	major_base=G	major_cov=32/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/43
RA	4407	.	1	676651	0	C	T	consensus_score=235.7	frequency=1	major_base=T	major_cov=44/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/43
RA	4408	.	1	679523	0	T	C	consensus_score=227.4	frequency=1	major_base=C	major_cov=46/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/35
RA	4409	.	1	681507	0	A	C	consensus_score=159.4	frequency=1	major_base=C	major_cov=28/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/30
RA	4410	.	1	681622	0	C	G	consensus_score=176.1	frequency=1	major_base=G	major_cov=36/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/26
RA	4411	.	1	684230	0	G	A	consensus_score=196.0	frequency=1	major_base=A	major_cov=40/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/29
RA	4412	.	1	685352	0	T	A	consensus_score=134.5	frequency=1	major_base=A	major_cov=18/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/33
RA	4413	.	1	685896	0	A	G	consensus_score=177.9	frequency=1	major_base=G	major_cov=41/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/23
RA	4414	.	1	686318	0	A	G	consensus_score=185.5	frequency=1	major_base=G	major_cov=40/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/26
RA	4415	.	1	686721	0	T	G	consensus_score=215.0	frequency=1	major_base=G	major_cov=32/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/44
RA	4416	.	1	687215	0	G	A	consensus_score=191.7	frequency=1	major_base=A	major_cov=34/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/37
RA	4417	.	1	687511	0	C	T	consensus_score=200.8	frequency=1	major_base=T	major_cov=34/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/40
RA	4418	.	1	687656	0	T	C	consensus_score=160.9	frequency=1	major_base=C	major_cov=27/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/31
RA	4419	.	1	689840	0	T	C	consensus_score=171.7	frequency=1	major_base=C	major_cov=30/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/37
RA	4420	.	1	690130	0	C	T	consensus_score=94.5	frequency=1	major_base=T	major_cov=17/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/19
RA	4421	.	1	690891	0	C	T	consensus_score=35.9	frequency=1	major_base=T	major_cov=8/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/7
RA	4422	.	1	690971	0	A	G	consensus_score=64.7	frequency=1	major_base=G	major_cov=11/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/13
RA	4423	.	1	691084	0	T	C	consensus_score=31.0	frequency=1	major_base=C	major_cov=8/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/5
RA	4424	.	1	692366	0	A	G	consensus_score=113.1	frequency=1	major_base=G	major_cov=17/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/25
RA	4425	.	1	692467	0	C	T	consensus_score=20.6	frequency=1	major_base=T	major_cov=4/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/6
RA	4426	.	1	692860	0	G	T	consensus_score=26.4	frequency=1	major_base=T	major_cov=5/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/7
RA	4427	.	1	693777	0	A	.	bias_e_value=1879360	bias_p_value=0.893633	consensus_reject=FREQUENCY_CUTOFF	consensus_score=21.4	fisher_strand_p_value=0.604396	frequency=7.333e-01	ks_quality_p_value=0.952672	major_base=.	major_cov=6/5	major_frequency=7.333e-01	minor_base=A	minor_cov=3/1	new_cov=6/5	polymorphism_frequency=7.333e-01	polymorphism_score=11.2	prediction=polymorphism	ref_cov=3/1	total_cov=9/6
RA	4428	.	1	693778	0	T	.	bias_e_value=1879360	bias_p_value=0.893633	consensus_reject=FREQUENCY_CUTOFF	consensus_score=21.2	fisher_strand_p_value=0.604396	frequency=7.333e-01	ks_quality_p_value=0.952672	major_base=.	major_cov=6/5	major_frequency=7.333e-01	minor_base=T	minor_cov=3/1	new_cov=6/5	polymorphism_frequency=7.333e-01	polymorphism_score=11.4	prediction=polymorphism	ref_cov=3/1	total_cov=9/6
RA	4429	.	1	693779	0	T	.	bias_e_value=1879360	bias_p_value=0.893633	consensus_reject=FREQUENCY_CUTOFF	consensus_score=21.2	fisher_strand_p_value=0.604396	frequency=7.333e-01	ks_quality_p_value=0.952672	major_base=.	major_cov=6/5	major_frequency=7.333e-01	minor_base=T	minor_cov=3/1	new_cov=6/5	polymorphism_frequency=7.333e-01	polymorphism_score=11.4	prediction=polymorphism	ref_cov=3/1	total_cov=9/6
RA	4430	.	1	693780	0	G	.	bias_e_value=1879360	bias_p_value=0.893633	consensus_reject=FREQUENCY_CUTOFF	consensus_score=21.5	fisher_strand_p_value=0.604396	frequency=7.333e-01	ks_quality_p_value=0.952672	major_base=.	major_cov=6/5	major_frequency=7.333e-01	minor_base=G	minor_cov=3/1	new_cov=6/5	polymorphism_frequency=7.333e-01	polymorphism_score=12.9	prediction=polymorphism	ref_cov=3/1	total_cov=9/6
RA	4431	.	1	694330	0	T	C	consensus_score=120.1	frequency=1	major_base=C	major_cov=29/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/14
RA	4432	.	1	694410	0	G	A	consensus_score=124.9	frequency=1	major_base=A	major_cov=28/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/19
RA	4433	.	1	694699	0	C	T	consensus_score=84.3	frequency=1	major_base=T	major_cov=15/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/18
RA	4434	.	1	696396	0	G	A	consensus_score=31.8	frequency=1	major_base=A	major_cov=9/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/5
RA	4435	.	1	697419	0	C	T	consensus_score=10.7	frequency=1	major_base=T	major_cov=3/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/3
RA	4436	.	1	698120	0	C	T	consensus_score=163.0	frequency=1	major_base=T	major_cov=32/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/28
RA	4437	.	1	698289	0	C	T	consensus_score=144.6	frequency=1	major_base=T	major_cov=28/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/26
RA	4438	.	1	698321	0	G	T	consensus_score=180.7	frequency=1	major_base=T	major_cov=32/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/34
RA	4439	.	1	700679	0	C	T	consensus_score=115.0	frequency=1	major_base=T	major_cov=18/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/26
RA	4440	.	1	702338	0	T	C	consensus_score=161.6	frequency=1	major_base=C	major_cov=26/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/33
RA	4441	.	1	702794	0	G	A	bias_e_value=940.549	bias_p_value=0.00044723	consensus_reject=FREQUENCY_CUTOFF	consensus_score=99.7	fisher_strand_p_value=4.02138e-05	frequency=2.836e-01	ks_quality_p_value=1	major_base=G	major_cov=24/24	major_frequency=7.164e-01	minor_base=A	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=2.836e-01	polymorphism_score=12.2	prediction=polymorphism	ref_cov=24/24	total_cov=24/44
RA	4442	.	1	702933	0	A	G	consensus_score=142.3	frequency=1	major_base=G	major_cov=23/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/29
RA	4443	.	1	703521	0	T	C	consensus_score=163.7	frequency=1	major_base=C	major_cov=26/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/34
RA	4444	.	1	706064	0	T	G	consensus_score=153.7	frequency=1	major_base=G	major_cov=26/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/30
RA	4445	.	1	706857	0	A	G	consensus_score=110.3	frequency=1	major_base=G	major_cov=16/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/25
RA	4446	.	1	707497	0	C	T	consensus_score=218.4	frequency=1	major_base=T	major_cov=40/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/41
RA	4447	.	1	713355	0	C	T	consensus_score=270.2	frequency=1	major_base=T	major_cov=39/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/56
RA	4448	.	1	713519	0	T	C	consensus_score=231.7	frequency=1	major_base=C	major_cov=35/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/46
RA	4449	.	1	713729	0	T	C	bias_e_value=1162980	bias_p_value=0.552994	consensus_score=130.1	fisher_strand_p_value=0.219925	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=25/30	major_frequency=9.649e-01	minor_base=A	minor_cov=2/0	new_cov=25/30	polymorphism_frequency=9.649e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/30
RA	4450	.	1	714493	0	T	C	consensus_score=225.9	frequency=1	major_base=C	major_cov=41/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/40
RA	4451	.	1	716344	0	T	C	consensus_score=236.4	frequency=1	major_base=C	major_cov=49/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/35
RA	4452	.	1	717451	0	G	A	bias_e_value=1552770	bias_p_value=0.738338	consensus_score=234.5	fisher_strand_p_value=0.372093	frequency=1	ks_quality_p_value=0.995632	major_base=A	major_cov=54/31	major_frequency=9.884e-01	minor_base=G	minor_cov=0/1	new_cov=54/31	polymorphism_frequency=9.884e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=54/32
RA	4453	.	1	721616	0	G	T	consensus_score=171.9	frequency=1	major_base=T	major_cov=35/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/29
RA	4454	.	1	721967	0	C	T	bias_e_value=838650	bias_p_value=0.398777	consensus_score=169.9	fisher_strand_p_value=0.131745	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=38/31	major_frequency=9.452e-01	minor_base=G	minor_cov=4/0	new_cov=38/31	polymorphism_frequency=9.452e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/31
RA	4455	.	1	722256	0	G	A	consensus_score=206.8	frequency=1	major_base=A	major_cov=40/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/36
RA	4456	.	1	722935	0	A	G	consensus_score=206.7	frequency=1	major_base=G	major_cov=41/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/34
RA	4457	.	1	723071	0	A	G	consensus_score=213.4	frequency=1	major_base=G	major_cov=41/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/36
RA	4458	.	1	723121	0	A	G	consensus_score=213.1	frequency=1	major_base=G	major_cov=33/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/44
RA	4459	.	1	725708	0	C	T	consensus_score=138.2	frequency=1	major_base=T	major_cov=21/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/29
RA	4460	.	1	726141	0	C	T	consensus_score=46.6	frequency=1	major_base=T	major_cov=13/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/6
RA	4461	.	1	726326	0	A	.	consensus_score=145.8	frequency=1	major_base=.	major_cov=20/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/15
RA	4462	.	1	726327	0	G	.	consensus_score=145.8	frequency=1	major_base=.	major_cov=20/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/15
RA	4463	.	1	727969	0	C	T	consensus_score=242.7	frequency=1	major_base=T	major_cov=57/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/39
RA	4464	.	1	728150	0	C	T	consensus_score=313.0	frequency=1	major_base=T	major_cov=60/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/49
RA	4465	.	1	729713	0	T	C	consensus_score=296.9	frequency=1	major_base=C	major_cov=52/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/50
RA	4466	.	1	730123	0	A	C	consensus_score=221.4	frequency=1	major_base=C	major_cov=39/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/39
RA	4467	.	1	730535	0	C	T	consensus_score=175.8	frequency=1	major_base=T	major_cov=34/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/32
RA	4468	.	1	732188	0	G	A	consensus_score=234.3	frequency=1	major_base=A	major_cov=44/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/39
RA	4469	.	1	732814	0	A	G	consensus_score=195.5	frequency=1	major_base=G	major_cov=30/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/42
RA	4470	.	1	733749	0	T	C	consensus_score=254.3	frequency=1	major_base=C	major_cov=44/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/44
RA	4471	.	1	735050	0	T	C	consensus_score=277.3	frequency=1	major_base=C	major_cov=42/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/58
RA	4472	.	1	735315	0	C	T	consensus_score=218.3	frequency=1	major_base=T	major_cov=38/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/42
RA	4473	.	1	735857	0	A	G	consensus_score=301.9	frequency=1	major_base=G	major_cov=49/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/56
RA	4474	.	1	737313	0	A	G	consensus_score=293.5	frequency=1	major_base=G	major_cov=61/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/45
RA	4475	.	1	737530	0	T	C	bias_e_value=1742850	bias_p_value=0.828723	consensus_score=282.6	fisher_strand_p_value=0.475248	frequency=1	ks_quality_p_value=0.999802	major_base=C	major_cov=53/47	major_frequency=9.901e-01	minor_base=T	minor_cov=0/1	new_cov=53/47	polymorphism_frequency=9.901e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=53/48
RA	4476	.	1	737844	0	T	C	consensus_score=195.9	frequency=1	major_base=C	major_cov=36/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/43
RA	4477	.	1	738462	0	T	C	consensus_score=265.1	frequency=1	major_base=C	major_cov=47/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/45
RA	4478	.	1	739563	0	T	C	consensus_score=192.1	frequency=1	major_base=C	major_cov=37/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/32
RA	4479	.	1	739649	0	G	A	consensus_score=230.6	frequency=1	major_base=A	major_cov=50/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/35
RA	4480	.	1	740016	0	C	T	consensus_score=248.6	frequency=1	major_base=T	major_cov=43/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/44
RA	4481	.	1	740090	0	G	A	consensus_score=190.3	frequency=1	major_base=A	major_cov=36/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/34
RA	4482	.	1	742956	0	G	A	consensus_score=233.2	frequency=1	major_base=A	major_cov=43/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/43
RA	4483	.	1	743068	0	G	A	bias_e_value=2103060	bias_p_value=1	consensus_score=240.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.99975	major_base=A	major_cov=51/38	major_frequency=9.889e-01	minor_base=G	minor_cov=1/0	new_cov=51/38	polymorphism_frequency=9.889e-01	polymorphism_score=-5.0	prediction=consensus	ref_cov=1/0	total_cov=52/38
RA	4484	.	1	743381	0	A	T	consensus_score=296.9	frequency=1	major_base=T	major_cov=56/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/51
RA	4485	.	1	744037	0	C	A	consensus_score=218.2	frequency=1	major_base=A	major_cov=37/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/40
RA	4486	.	1	744360	0	G	T	consensus_score=257.8	frequency=1	major_base=T	major_cov=45/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/51
RA	4487	.	1	744667	0	A	G	consensus_score=243.8	frequency=1	major_base=G	major_cov=47/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/41
RA	4488	.	1	744899	0	A	.	consensus_score=390.6	frequency=1	major_base=.	major_cov=42/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/50
RA	4489	.	1	745455	0	A	G	consensus_score=276.7	frequency=1	major_base=G	major_cov=51/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/47
RA	4490	.	1	746077	0	C	T	consensus_score=193.8	frequency=1	major_base=T	major_cov=36/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/36
RA	4491	.	1	746411	0	T	C	consensus_score=133.8	frequency=1	major_base=C	major_cov=26/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/25
RA	4492	.	1	747206	0	A	C	consensus_score=236.8	frequency=1	major_base=C	major_cov=39/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/44
RA	4493	.	1	747577	0	A	C	consensus_score=242.7	frequency=1	major_base=C	major_cov=40/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/47
RA	4494	.	1	747755	0	G	A	bias_e_value=0.00216654	bias_p_value=1.03019e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=85.2	fisher_strand_p_value=4.13584e-11	frequency=3.065e-01	ks_quality_p_value=1	major_base=G	major_cov=6/37	major_frequency=6.935e-01	minor_base=A	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=3.065e-01	polymorphism_score=13.0	prediction=polymorphism	ref_cov=6/37	total_cov=26/37
RA	4495	.	1	749183	0	T	C	consensus_score=196.0	frequency=1	major_base=C	major_cov=28/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/41
RA	4496	.	1	749352	0	G	T	bias_e_value=1204090	bias_p_value=0.572544	consensus_score=123.8	fisher_strand_p_value=0.235294	frequency=1	ks_quality_p_value=0.990625	major_base=T	major_cov=26/23	major_frequency=9.423e-01	minor_base=A	minor_cov=0/3	new_cov=26/23	polymorphism_frequency=9.423e-01	polymorphism_score=-4.7	prediction=consensus	ref_cov=0/0	total_cov=26/26
RA	4497	.	1	749703	0	C	T	bias_e_value=1718000	bias_p_value=0.816905	consensus_score=236.7	fisher_strand_p_value=0.460674	frequency=1	ks_quality_p_value=0.997704	major_base=T	major_cov=40/48	major_frequency=9.888e-01	minor_base=C	minor_cov=1/0	new_cov=40/48	polymorphism_frequency=9.888e-01	polymorphism_score=-5.0	prediction=consensus	ref_cov=1/0	total_cov=41/48
RA	4498	.	1	750570	0	G	A	consensus_score=205.9	frequency=1	major_base=A	major_cov=43/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/34
RA	4499	.	1	752425	0	T	C	consensus_score=176.9	frequency=1	major_base=C	major_cov=31/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/33
RA	4500	.	1	752441	0	T	C	consensus_score=177.7	frequency=1	major_base=C	major_cov=31/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/35
RA	4501	.	1	752617	0	T	C	consensus_score=206.7	frequency=1	major_base=C	major_cov=40/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/34
RA	4502	.	1	752626	0	C	T	consensus_score=197.7	frequency=1	major_base=T	major_cov=40/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/33
RA	4503	.	1	754066	0	A	G	consensus_score=217.2	frequency=1	major_base=G	major_cov=40/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/38
RA	4504	.	1	754216	0	T	C	consensus_score=273.7	frequency=1	major_base=C	major_cov=56/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/42
RA	4505	.	1	754545	0	A	G	consensus_score=227.8	frequency=1	major_base=G	major_cov=39/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/44
RA	4506	.	1	755644	0	T	C	consensus_score=260.8	frequency=1	major_base=C	major_cov=41/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/54
RA	4507	.	1	756409	0	A	G	bias_e_value=2103060	bias_p_value=1	consensus_score=247.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999733	major_base=G	major_cov=53/33	major_frequency=9.885e-01	minor_base=A	minor_cov=1/0	new_cov=53/33	polymorphism_frequency=9.885e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=54/33
RA	4508	.	1	757612	1	.	T	consensus_score=103.1	frequency=1	major_base=T	major_cov=15/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/22
RA	4509	.	1	757702	0	C	T	consensus_score=93.5	frequency=1	major_base=T	major_cov=15/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/21
RA	4510	.	1	758399	0	G	A	consensus_score=223.5	frequency=1	major_base=A	major_cov=48/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/33
RA	4511	.	1	761419	0	A	C	consensus_score=273.3	frequency=1	major_base=C	major_cov=51/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/44
RA	4512	.	1	763099	0	T	C	consensus_score=227.4	frequency=1	major_base=C	major_cov=44/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/38
RA	4513	.	1	766354	0	G	T	consensus_score=127.5	frequency=1	major_base=T	major_cov=23/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/25
RA	4514	.	1	767380	0	G	A	consensus_score=209.6	frequency=1	major_base=A	major_cov=36/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/41
RA	4515	.	1	768260	0	C	T	consensus_score=242.6	frequency=1	major_base=T	major_cov=44/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/40
RA	4516	.	1	768355	0	A	C	consensus_score=261.6	frequency=1	major_base=C	major_cov=53/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/37
RA	4517	.	1	769473	0	T	C	consensus_score=200.8	frequency=1	major_base=C	major_cov=40/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/31
RA	4518	.	1	769723	0	C	T	consensus_score=252.5	frequency=1	major_base=T	major_cov=48/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/42
RA	4519	.	1	770679	0	G	A	consensus_score=256.1	frequency=1	major_base=A	major_cov=51/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/43
RA	4520	.	1	770921	0	G	T	consensus_score=309.0	frequency=1	major_base=T	major_cov=57/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/55
RA	4521	.	1	771671	0	T	C	consensus_score=278.1	frequency=1	major_base=C	major_cov=45/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/54
RA	4522	.	1	772155	0	C	A	consensus_score=46.4	frequency=1	major_base=A	major_cov=8/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/11
RA	4523	.	1	772240	0	T	G	consensus_score=22.7	frequency=1	major_base=G	major_cov=5/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/5
RA	4524	.	1	774667	0	G	A	consensus_score=246.0	frequency=1	major_base=A	major_cov=43/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/46
RA	4525	.	1	775709	0	A	G	consensus_score=271.1	frequency=1	major_base=G	major_cov=41/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/55
RA	4526	.	1	777338	0	A	C	consensus_score=180.7	frequency=1	major_base=C	major_cov=31/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/33
RA	4527	.	1	778303	0	C	T	consensus_score=279.3	frequency=1	major_base=T	major_cov=47/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/51
RA	4528	.	1	778776	0	A	C	consensus_score=266.3	frequency=1	major_base=C	major_cov=45/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/50
RA	4529	.	1	781648	0	C	T	consensus_score=267.2	frequency=1	major_base=T	major_cov=50/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/47
RA	4530	.	1	782231	0	G	A	consensus_score=237.7	frequency=1	major_base=A	major_cov=34/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/50
RA	4531	.	1	782372	0	C	T	bias_e_value=1727570	bias_p_value=0.821455	consensus_score=151.4	fisher_strand_p_value=0.465517	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=31/26	major_frequency=9.828e-01	minor_base=C	minor_cov=0/1	new_cov=31/26	polymorphism_frequency=9.828e-01	polymorphism_score=-5.7	prediction=consensus	ref_cov=0/1	total_cov=31/27
RA	4532	.	1	783728	0	C	G	consensus_score=95.2	frequency=1	major_base=G	major_cov=18/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/16
RA	4533	.	1	785211	0	C	A	consensus_score=258.1	frequency=1	major_base=A	major_cov=59/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/39
RA	4534	.	1	785553	0	T	C	consensus_score=226.5	frequency=1	major_base=C	major_cov=41/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/38
RA	4535	.	1	786250	0	A	G	consensus_score=206.9	frequency=1	major_base=G	major_cov=40/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/35
RA	4536	.	1	787923	0	T	C	consensus_score=189.8	frequency=1	major_base=C	major_cov=42/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/27
RA	4537	.	1	790711	0	A	G	consensus_score=163.3	frequency=1	major_base=G	major_cov=19/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/40
RA	4538	.	1	791359	0	T	G	consensus_score=240.3	frequency=1	major_base=G	major_cov=43/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/39
RA	4539	.	1	792430	0	T	C	consensus_score=210.2	frequency=1	major_base=C	major_cov=35/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/41
RA	4540	.	1	794142	0	T	C	bias_e_value=1699910	bias_p_value=0.808303	consensus_score=215.0	fisher_strand_p_value=0.448718	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=34/43	major_frequency=9.872e-01	minor_base=G	minor_cov=1/0	new_cov=34/43	polymorphism_frequency=9.872e-01	polymorphism_score=-5.5	prediction=consensus	ref_cov=0/0	total_cov=35/43
RA	4541	.	1	795265	1	.	A	bias_e_value=1448670	bias_p_value=0.688842	consensus_score=168.6	fisher_strand_p_value=0.34375	frequency=1	ks_quality_p_value=0.941746	major_base=A	major_cov=42/21	major_frequency=9.844e-01	minor_base=.	minor_cov=0/1	new_cov=42/21	polymorphism_frequency=9.844e-01	polymorphism_score=-3.3	prediction=consensus	ref_cov=0/1	total_cov=42/22
RA	4542	.	1	795540	0	T	G	consensus_score=280.5	frequency=1	major_base=G	major_cov=52/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/46
RA	4543	.	1	795957	0	G	A	consensus_score=272.8	frequency=1	major_base=A	major_cov=43/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/56
RA	4544	.	1	796692	0	G	A	consensus_score=245.1	frequency=1	major_base=A	major_cov=43/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/47
RA	4545	.	1	797239	0	A	G	consensus_score=250.0	frequency=1	major_base=G	major_cov=44/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/46
RA	4546	.	1	797245	0	C	T	consensus_score=240.4	frequency=1	major_base=T	major_cov=44/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/46
RA	4547	.	1	798439	0	C	T	consensus_score=188.8	frequency=1	major_base=T	major_cov=40/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/30
RA	4548	.	1	798760	0	A	C	consensus_score=202.4	frequency=1	major_base=C	major_cov=44/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/29
RA	4549	.	1	799209	0	G	T	consensus_score=289.2	frequency=1	major_base=T	major_cov=54/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/48
RA	4550	.	1	799263	0	A	G	consensus_score=317.3	frequency=1	major_base=G	major_cov=53/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/58
RA	4551	.	1	799779	0	T	C	consensus_score=259.3	frequency=1	major_base=C	major_cov=43/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/47
RA	4552	.	1	800237	0	T	G	consensus_score=213.0	frequency=1	major_base=G	major_cov=37/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/38
RA	4553	.	1	800531	0	G	A	consensus_score=287.3	frequency=1	major_base=A	major_cov=57/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/47
RA	4554	.	1	802054	0	T	C	consensus_score=285.2	frequency=1	major_base=C	major_cov=53/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/50
RA	4555	.	1	803107	0	A	G	consensus_score=238.7	frequency=1	major_base=G	major_cov=56/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/26
RA	4556	.	1	803348	0	A	G	consensus_score=231.6	frequency=1	major_base=G	major_cov=36/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/46
RA	4557	.	1	803356	0	G	A	consensus_score=232.0	frequency=1	major_base=A	major_cov=35/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/47
RA	4558	.	1	803750	0	A	G	consensus_score=178.5	frequency=1	major_base=G	major_cov=24/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/41
RA	4559	.	1	803818	0	C	T	consensus_score=231.0	frequency=1	major_base=T	major_cov=31/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/49
RA	4560	.	1	804067	0	T	C	consensus_score=240.9	frequency=1	major_base=C	major_cov=40/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/47
RA	4561	.	1	804284	0	T	.	consensus_score=167.4	frequency=1	major_base=.	major_cov=19/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/21
RA	4562	.	1	805239	0	A	G	consensus_score=192.4	frequency=1	major_base=G	major_cov=34/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/34
RA	4563	.	1	805614	0	C	T	consensus_score=226.8	frequency=1	major_base=T	major_cov=51/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/30
RA	4564	.	1	806891	1	.	A	bias_e_value=2103060	bias_p_value=1	consensus_score=344.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=72/48	major_frequency=9.917e-01	minor_base=.	minor_cov=1/0	new_cov=72/48	polymorphism_frequency=9.917e-01	polymorphism_score=-4.8	prediction=consensus	ref_cov=1/0	total_cov=73/48
RA	4565	.	1	807030	0	C	.	consensus_score=344.9	frequency=1	major_base=.	major_cov=44/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/37
RA	4566	.	1	808525	0	C	T	consensus_score=309.1	frequency=1	major_base=T	major_cov=49/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/59
RA	4567	.	1	810903	0	C	T	consensus_score=213.3	frequency=1	major_base=T	major_cov=28/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/51
RA	4568	.	1	810945	0	T	G	consensus_score=157.5	frequency=1	major_base=G	major_cov=26/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/33
RA	4569	.	1	811401	0	G	A	consensus_score=292.6	frequency=1	major_base=A	major_cov=54/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/48
RA	4570	.	1	811685	0	A	G	consensus_score=322.2	frequency=1	major_base=G	major_cov=58/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/57
RA	4571	.	1	812514	0	T	C	consensus_score=135.1	frequency=1	major_base=C	major_cov=25/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/24
RA	4572	.	1	813109	0	A	G	consensus_score=302.3	frequency=1	major_base=G	major_cov=63/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/46
RA	4573	.	1	813619	0	T	C	consensus_score=219.1	frequency=1	major_base=C	major_cov=49/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/29
RA	4574	.	1	814674	0	T	C	consensus_score=192.2	frequency=1	major_base=C	major_cov=35/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/32
RA	4575	.	1	818647	0	T	C	consensus_score=278.8	frequency=1	major_base=C	major_cov=60/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/42
RA	4576	.	1	818913	0	T	C	consensus_score=220.4	frequency=1	major_base=C	major_cov=45/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/34
RA	4577	.	1	819874	0	T	G	consensus_score=183.6	frequency=1	major_base=G	major_cov=42/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/25
RA	4578	.	1	821366	0	A	G	consensus_score=223.6	frequency=1	major_base=G	major_cov=52/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/26
RA	4579	.	1	822027	0	T	C	consensus_score=224.6	frequency=1	major_base=C	major_cov=31/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/51
RA	4580	.	1	822285	0	C	T	consensus_score=93.6	frequency=1	major_base=T	major_cov=20/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/16
RA	4581	.	1	822893	0	A	G	consensus_score=192.5	frequency=1	major_base=G	major_cov=44/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/27
RA	4582	.	1	824112	0	T	C	bias_e_value=2103060	bias_p_value=1	consensus_score=185.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=44/22	major_frequency=9.851e-01	minor_base=G	minor_cov=1/0	new_cov=44/22	polymorphism_frequency=9.851e-01	polymorphism_score=-5.4	prediction=consensus	ref_cov=0/0	total_cov=45/22
RA	4583	.	1	824229	0	G	A	consensus_score=170.1	frequency=1	major_base=A	major_cov=30/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/33
RA	4584	.	1	824964	0	C	G	consensus_score=209.8	frequency=1	major_base=G	major_cov=31/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/44
RA	4585	.	1	825858	0	T	C	consensus_score=293.3	frequency=1	major_base=C	major_cov=55/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/50
RA	4586	.	1	827230	0	C	T	bias_e_value=2103060	bias_p_value=1	consensus_score=277.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=57/47	major_frequency=9.905e-01	minor_base=C	minor_cov=1/0	new_cov=57/47	polymorphism_frequency=9.905e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=58/47
RA	4587	.	1	827622	0	A	G	consensus_score=264.7	frequency=1	major_base=G	major_cov=49/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/48
RA	4588	.	1	827860	0	C	T	bias_e_value=0.00166148	bias_p_value=7.90033e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=92.5	fisher_strand_p_value=3.13689e-11	frequency=3.038e-01	ks_quality_p_value=1	major_base=C	major_cov=13/42	major_frequency=6.962e-01	minor_base=T	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=3.038e-01	polymorphism_score=17.8	prediction=polymorphism	ref_cov=13/42	total_cov=37/42
RA	4589	.	1	827885	0	C	T	bias_e_value=6.61534e-08	bias_p_value=3.14558e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=73.3	fisher_strand_p_value=8.81997e-16	frequency=3.875e-01	ks_quality_p_value=1	major_base=C	major_cov=7/42	major_frequency=6.125e-01	minor_base=T	minor_cov=31/0	new_cov=31/0	polymorphism_frequency=3.875e-01	polymorphism_score=25.8	prediction=polymorphism	ref_cov=7/42	total_cov=39/42
RA	4590	.	1	827917	0	G	T	bias_e_value=1.16797	bias_p_value=5.55365e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=152.4	fisher_strand_p_value=3.03294e-08	frequency=2.432e-01	ks_quality_p_value=1	major_base=G	major_cov=16/40	major_frequency=7.568e-01	minor_base=T	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.432e-01	polymorphism_score=10.6	prediction=polymorphism	ref_cov=16/40	total_cov=34/40
RA	4591	.	1	829113	0	C	T	consensus_score=58.2	frequency=1	major_base=T	major_cov=13/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/10
RA	4592	.	1	829411	0	C	T	consensus_score=152.0	frequency=1	major_base=T	major_cov=28/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/26
RA	4593	.	1	829823	0	T	C	consensus_score=297.3	frequency=1	major_base=C	major_cov=53/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/53
RA	4594	.	1	831104	0	G	T	consensus_score=238.6	frequency=1	major_base=T	major_cov=43/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/45
RA	4595	.	1	831349	0	T	C	consensus_score=103.1	frequency=1	major_base=C	major_cov=16/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/21
RA	4596	.	1	831364	0	A	G	consensus_score=101.5	frequency=1	major_base=G	major_cov=18/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/20
RA	4597	.	1	831387	0	C	A	consensus_score=99.1	frequency=1	major_base=A	major_cov=19/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/16
RA	4598	.	1	831824	0	G	A	consensus_score=242.2	frequency=1	major_base=A	major_cov=42/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/47
RA	4599	.	1	831938	0	A	G	consensus_score=254.7	frequency=1	major_base=G	major_cov=47/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/44
RA	4600	.	1	832943	0	C	T	consensus_score=58.5	frequency=1	major_base=T	major_cov=8/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/15
RA	4601	.	1	833075	0	C	T	consensus_score=145.9	frequency=1	major_base=T	major_cov=25/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/28
RA	4602	.	1	833256	0	A	T	consensus_score=221.9	frequency=1	major_base=T	major_cov=49/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/32
RA	4603	.	1	834419	0	C	T	consensus_score=331.9	frequency=1	major_base=T	major_cov=47/75	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/75	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/75
RA	4604	.	1	834916	0	A	G	consensus_score=282.6	frequency=1	major_base=G	major_cov=55/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/47
RA	4605	.	1	836327	0	G	A	consensus_score=237.8	frequency=1	major_base=A	major_cov=42/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/45
RA	4606	.	1	836766	0	C	T	consensus_score=282.0	frequency=1	major_base=T	major_cov=51/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/48
RA	4607	.	1	837258	0	A	G	consensus_score=217.2	frequency=1	major_base=G	major_cov=38/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/38
RA	4608	.	1	837519	0	T	C	consensus_score=334.7	frequency=1	major_base=C	major_cov=45/71	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/71	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/71
RA	4609	.	1	838171	0	A	G	bias_e_value=2103060	bias_p_value=1	consensus_score=250.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999756	major_base=G	major_cov=50/40	major_frequency=9.890e-01	minor_base=T	minor_cov=1/0	new_cov=50/40	polymorphism_frequency=9.890e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/40
RA	4610	.	1	839961	0	T	G	consensus_score=298.9	frequency=1	major_base=G	major_cov=46/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/57
RA	4611	.	1	841417	0	C	A	consensus_score=253.6	frequency=1	major_base=A	major_cov=40/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/53
RA	4612	.	1	845073	0	A	G	consensus_score=250.4	frequency=1	major_base=G	major_cov=46/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/44
RA	4613	.	1	846000	0	C	T	bias_e_value=1626160	bias_p_value=0.773235	consensus_score=207.2	fisher_strand_p_value=0.407407	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=32/48	major_frequency=9.877e-01	minor_base=C	minor_cov=1/0	new_cov=32/48	polymorphism_frequency=9.877e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=35/48
RA	4614	.	1	847989	0	C	T	bias_e_value=12005.9	bias_p_value=0.00570877	consensus_score=194.9	fisher_strand_p_value=0.000689503	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=53/19	major_frequency=9.231e-01	minor_base=C	minor_cov=0/6	new_cov=53/19	polymorphism_frequency=9.231e-01	polymorphism_score=-4.9	prediction=consensus	ref_cov=0/6	total_cov=53/25
RA	4615	.	1	848902	0	T	C	consensus_score=222.7	frequency=1	major_base=C	major_cov=37/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/45
RA	4616	.	1	848959	0	C	T	consensus_score=218.0	frequency=1	major_base=T	major_cov=32/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/45
RA	4617	.	1	852039	0	C	.	consensus_score=291.7	frequency=1	major_base=.	major_cov=39/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/30
RA	4618	.	1	852183	0	G	A	consensus_score=221.6	frequency=1	major_base=A	major_cov=33/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/45
RA	4619	.	1	852351	0	T	C	consensus_score=265.2	frequency=1	major_base=C	major_cov=44/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/51
RA	4620	.	1	852643	0	A	G	consensus_score=229.2	frequency=1	major_base=G	major_cov=44/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/38
RA	4621	.	1	852664	0	T	C	bias_e_value=1713360	bias_p_value=0.814699	consensus_score=228.5	fisher_strand_p_value=0.45679	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=44/36	major_frequency=9.877e-01	minor_base=T	minor_cov=0/1	new_cov=44/36	polymorphism_frequency=9.877e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=44/37
RA	4622	.	1	853890	0	C	T	consensus_score=36.0	frequency=1	major_base=T	major_cov=7/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/8
RA	4623	.	1	853905	0	A	G	consensus_score=67.2	frequency=1	major_base=G	major_cov=14/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/11
RA	4624	.	1	853908	0	C	T	consensus_score=65.8	frequency=1	major_base=T	major_cov=14/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/11
RA	4625	.	1	853920	0	C	T	consensus_score=78.6	frequency=1	major_base=T	major_cov=16/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/14
RA	4626	.	1	853944	0	C	T	consensus_score=102.5	frequency=1	major_base=T	major_cov=21/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/17
RA	4627	.	1	853947	0	C	T	consensus_score=103.0	frequency=1	major_base=T	major_cov=21/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/17
RA	4628	.	1	854001	0	C	T	consensus_score=169.1	frequency=1	major_base=T	major_cov=33/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/31
RA	4629	.	1	854013	0	G	A	consensus_score=187.3	frequency=1	major_base=A	major_cov=35/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/34
RA	4630	.	1	854022	0	C	T	consensus_score=207.5	frequency=1	major_base=T	major_cov=40/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/36
RA	4631	.	1	854055	0	C	G	consensus_score=249.0	frequency=1	major_base=G	major_cov=45/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/44
RA	4632	.	1	854058	0	G	A	consensus_score=254.2	frequency=1	major_base=A	major_cov=45/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/44
RA	4633	.	1	854103	0	G	A	consensus_score=310.2	frequency=1	major_base=A	major_cov=52/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/60
RA	4634	.	1	854113	0	T	G	bias_e_value=1311790	bias_p_value=0.623756	consensus_score=316.4	fisher_strand_p_value=0.482143	frequency=1	ks_quality_p_value=0.560374	major_base=G	major_cov=53/58	major_frequency=9.911e-01	minor_base=A	minor_cov=1/0	new_cov=53/58	polymorphism_frequency=9.911e-01	polymorphism_score=-5.7	prediction=consensus	ref_cov=0/0	total_cov=54/58
RA	4635	.	1	854124	0	G	C	consensus_score=305.4	frequency=1	major_base=C	major_cov=53/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/57
RA	4636	.	1	854127	0	C	A	consensus_score=304.5	frequency=1	major_base=A	major_cov=53/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/57
RA	4637	.	1	854142	0	C	G	consensus_score=280.1	frequency=1	major_base=G	major_cov=48/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/54
RA	4638	.	1	854145	0	T	C	bias_e_value=2103060	bias_p_value=1	consensus_score=286.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999806	major_base=C	major_cov=48/53	major_frequency=9.902e-01	minor_base=T	minor_cov=0/1	new_cov=48/53	polymorphism_frequency=9.902e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=48/54
RA	4639	.	1	854160	0	A	G	consensus_score=287.2	frequency=1	major_base=G	major_cov=47/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/55
RA	4640	.	1	854211	0	A	G	consensus_score=253.8	frequency=1	major_base=G	major_cov=42/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/46
RA	4641	.	1	854214	0	T	C	consensus_score=254.1	frequency=1	major_base=C	major_cov=42/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/46
RA	4642	.	1	854220	0	G	A	consensus_score=250.5	frequency=1	major_base=A	major_cov=44/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/47
RA	4643	.	1	854257	0	A	G	consensus_score=254.9	frequency=1	major_base=G	major_cov=50/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/39
RA	4644	.	1	854258	0	G	A	consensus_score=243.3	frequency=1	major_base=A	major_cov=50/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/39
RA	4645	.	1	854265	0	G	.	consensus_score=368.5	frequency=1	major_base=.	major_cov=44/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/42
RA	4646	.	1	854286	0	C	T	consensus_score=224.3	frequency=1	major_base=T	major_cov=44/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/39
RA	4647	.	1	854310	0	C	G	consensus_score=253.6	frequency=1	major_base=G	major_cov=45/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/46
RA	4648	.	1	854314	0	G	A	bias_e_value=2103000	bias_p_value=0.999973	consensus_score=223.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.99268	major_base=A	major_cov=43/39	major_frequency=9.880e-01	minor_base=T	minor_cov=1/0	new_cov=43/39	polymorphism_frequency=9.880e-01	polymorphism_score=-3.8	prediction=consensus	ref_cov=0/0	total_cov=44/39
RA	4649	.	1	854316	0	C	T	consensus_score=228.3	frequency=1	major_base=T	major_cov=44/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/39
RA	4650	.	1	854379	0	C	A	consensus_score=272.9	frequency=1	major_base=A	major_cov=51/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/47
RA	4651	.	1	854394	0	T	C	consensus_score=292.6	frequency=1	major_base=C	major_cov=49/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/51
RA	4652	.	1	854409	0	C	T	consensus_score=269.3	frequency=1	major_base=T	major_cov=47/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/51
RA	4653	.	1	854427	0	G	A	bias_e_value=1677470	bias_p_value=0.797633	consensus_score=285.0	fisher_strand_p_value=0.435644	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=43/57	major_frequency=9.901e-01	minor_base=T	minor_cov=1/0	new_cov=43/57	polymorphism_frequency=9.901e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/57
RA	4654	.	1	854433	0	G	T	bias_e_value=2101810	bias_p_value=0.999407	consensus_score=280.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.965762	major_base=T	major_cov=43/55	major_frequency=9.899e-01	minor_base=.	minor_cov=0/1	new_cov=43/55	polymorphism_frequency=9.899e-01	polymorphism_score=-3.5	prediction=consensus	ref_cov=0/0	total_cov=43/56
RA	4655	.	1	854454	0	C	T	bias_e_value=1592490	bias_p_value=0.757227	consensus_score=268.7	fisher_strand_p_value=0.39	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=38/61	major_frequency=9.900e-01	minor_base=C	minor_cov=1/0	new_cov=38/61	polymorphism_frequency=9.900e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=39/61
RA	4656	.	1	854466	0	G	A	bias_e_value=1895830	bias_p_value=0.901466	consensus_score=256.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.590308	major_base=A	major_cov=33/60	major_frequency=9.894e-01	minor_base=T	minor_cov=0/1	new_cov=33/60	polymorphism_frequency=9.894e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=0/0	total_cov=33/61
RA	4657	.	1	854494	0	A	T	consensus_score=256.0	frequency=1	major_base=T	major_cov=28/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/61
RA	4658	.	1	854495	0	G	C	consensus_score=245.1	frequency=1	major_base=C	major_cov=28/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/61
RA	4659	.	1	854531	0	T	C	consensus_score=250.8	frequency=1	major_base=C	major_cov=32/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/54
RA	4660	.	1	854544	0	A	G	consensus_score=255.8	frequency=1	major_base=G	major_cov=38/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/51
RA	4661	.	1	854547	0	C	T	consensus_score=253.3	frequency=1	major_base=T	major_cov=38/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/51
RA	4662	.	1	854649	0	G	A	consensus_score=301.0	frequency=1	major_base=A	major_cov=52/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/55
RA	4663	.	1	854707	0	A	C	consensus_score=313.8	frequency=1	major_base=C	major_cov=61/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/53
RA	4664	.	1	854918	0	T	C	bias_e_value=2100540	bias_p_value=0.998805	consensus_score=287.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.951516	major_base=C	major_cov=49/52	major_frequency=9.902e-01	minor_base=T	minor_cov=0/1	new_cov=49/52	polymorphism_frequency=9.902e-01	polymorphism_score=-5.3	prediction=consensus	ref_cov=0/1	total_cov=49/53
RA	4665	.	1	854930	0	A	C	consensus_score=281.1	frequency=1	major_base=C	major_cov=50/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/51
RA	4666	.	1	854939	0	A	C	consensus_score=283.6	frequency=1	major_base=C	major_cov=50/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/54
RA	4667	.	1	854951	0	G	T	consensus_score=258.4	frequency=1	major_base=T	major_cov=46/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/51
RA	4668	.	1	854954	0	A	T	bias_e_value=1732740	bias_p_value=0.823915	consensus_score=241.9	fisher_strand_p_value=0.46875	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=44/51	major_frequency=9.896e-01	minor_base=C	minor_cov=1/0	new_cov=44/51	polymorphism_frequency=9.896e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/51
RA	4669	.	1	854960	0	A	G	consensus_score=247.6	frequency=1	major_base=G	major_cov=42/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/45
RA	4670	.	1	854963	0	C	T	consensus_score=233.6	frequency=1	major_base=T	major_cov=42/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/45
RA	4671	.	1	854964	0	C	T	consensus_score=238.7	frequency=1	major_base=T	major_cov=42/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/45
RA	4672	.	1	854966	0	G	A	consensus_score=237.1	frequency=1	major_base=A	major_cov=42/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/45
RA	4673	.	1	854972	0	T	C	consensus_score=273.1	frequency=1	major_base=C	major_cov=49/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/50
RA	4674	.	1	854975	0	G	A	bias_e_value=2103060	bias_p_value=1	consensus_score=276.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=49/49	major_frequency=9.899e-01	minor_base=G	minor_cov=0/1	new_cov=49/49	polymorphism_frequency=9.899e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=49/50
RA	4675	.	1	855020	0	T	G	consensus_score=274.7	frequency=1	major_base=G	major_cov=54/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/44
RA	4676	.	1	855051	0	A	G	consensus_score=275.2	frequency=1	major_base=G	major_cov=57/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/42
RA	4677	.	1	855092	0	C	T	consensus_score=228.5	frequency=1	major_base=T	major_cov=42/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/42
RA	4678	.	1	855098	0	G	A	consensus_score=247.0	frequency=1	major_base=A	major_cov=43/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/47
RA	4679	.	1	855128	0	T	C	consensus_score=228.3	frequency=1	major_base=C	major_cov=37/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/44
RA	4680	.	1	855130	0	A	G	consensus_score=223.9	frequency=1	major_base=G	major_cov=37/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/44
RA	4681	.	1	855134	0	G	A	consensus_score=225.1	frequency=1	major_base=A	major_cov=37/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/44
RA	4682	.	1	855155	0	G	C	consensus_score=183.1	frequency=1	major_base=C	major_cov=30/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/37
RA	4683	.	1	855164	0	C	T	consensus_score=170.9	frequency=1	major_base=T	major_cov=29/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/35
RA	4684	.	1	855179	0	C	T	consensus_score=152.6	frequency=1	major_base=T	major_cov=29/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/29
RA	4685	.	1	855188	0	G	A	consensus_score=159.1	frequency=1	major_base=A	major_cov=32/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/26
RA	4686	.	1	855200	0	C	T	consensus_score=143.1	frequency=1	major_base=T	major_cov=27/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/26
RA	4687	.	1	855212	0	A	T	consensus_score=151.6	frequency=1	major_base=T	major_cov=33/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/23
RA	4688	.	1	855224	0	G	A	consensus_score=159.2	frequency=1	major_base=A	major_cov=35/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/22
RA	4689	.	1	855236	0	G	T	consensus_score=155.5	frequency=1	major_base=T	major_cov=37/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/18
RA	4690	.	1	855237	0	G	C	consensus_score=150.8	frequency=1	major_base=C	major_cov=37/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/18
RA	4691	.	1	855250	0	A	T	consensus_score=161.1	frequency=1	major_base=T	major_cov=39/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/20
RA	4692	.	1	855269	0	C	.	consensus_score=205.5	frequency=1	major_base=.	major_cov=32/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/17
RA	4693	.	1	855270	0	G	.	consensus_score=205.5	frequency=1	major_base=.	major_cov=32/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/17
RA	4694	.	1	855271	0	T	.	consensus_score=205.5	frequency=1	major_base=.	major_cov=32/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/17
RA	4695	.	1	855282	0	G	C	consensus_score=190.9	frequency=1	major_base=C	major_cov=41/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/27
RA	4696	.	1	855291	0	G	T	consensus_score=190.9	frequency=1	major_base=T	major_cov=42/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/28
RA	4697	.	1	855292	0	C	G	consensus_score=200.7	frequency=1	major_base=G	major_cov=42/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/28
RA	4698	.	1	855300	0	C	G	consensus_score=200.2	frequency=1	major_base=G	major_cov=44/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/29
RA	4699	.	1	855320	0	T	C	consensus_score=219.9	frequency=1	major_base=C	major_cov=46/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/31
RA	4700	.	1	855329	0	A	G	consensus_score=215.2	frequency=1	major_base=G	major_cov=45/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/29
RA	4701	.	1	855332	0	T	G	consensus_score=201.1	frequency=1	major_base=G	major_cov=45/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/29
RA	4702	.	1	855333	0	T	G	consensus_score=200.4	frequency=1	major_base=G	major_cov=45/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/29
RA	4703	.	1	855335	0	G	A	consensus_score=212.0	frequency=1	major_base=A	major_cov=45/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/29
RA	4704	.	1	855338	0	A	G	consensus_score=199.5	frequency=1	major_base=G	major_cov=45/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/29
RA	4705	.	1	855341	0	C	A	consensus_score=212.3	frequency=1	major_base=A	major_cov=45/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/29
RA	4706	.	1	855344	0	A	G	consensus_score=213.9	frequency=1	major_base=G	major_cov=45/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/29
RA	4707	.	1	855347	0	A	G	consensus_score=214.0	frequency=1	major_base=G	major_cov=45/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/29
RA	4708	.	1	855351	0	C	G	consensus_score=213.6	frequency=1	major_base=G	major_cov=45/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/29
RA	4709	.	1	855357	0	G	T	consensus_score=201.1	frequency=1	major_base=T	major_cov=45/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/29
RA	4710	.	1	855362	0	C	T	consensus_score=200.4	frequency=1	major_base=T	major_cov=45/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/29
RA	4711	.	1	855363	0	C	G	consensus_score=208.5	frequency=1	major_base=G	major_cov=45/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/29
RA	4712	.	1	855365	0	A	G	consensus_score=201.7	frequency=1	major_base=G	major_cov=45/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/29
RA	4713	.	1	855374	0	C	G	consensus_score=221.7	frequency=1	major_base=G	major_cov=47/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/33
RA	4714	.	1	855383	0	G	C	consensus_score=225.4	frequency=1	major_base=C	major_cov=49/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/33
RA	4715	.	1	855443	0	A	C	consensus_score=294.9	frequency=1	major_base=C	major_cov=54/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/50
RA	4716	.	1	855464	0	T	C	consensus_score=271.1	frequency=1	major_base=C	major_cov=48/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/49
RA	4717	.	1	855476	0	A	T	consensus_score=258.2	frequency=1	major_base=T	major_cov=44/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/51
RA	4718	.	1	855482	0	G	A	bias_e_value=2103060	bias_p_value=1	consensus_score=259.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999141	major_base=A	major_cov=45/51	major_frequency=9.897e-01	minor_base=G	minor_cov=0/1	new_cov=45/51	polymorphism_frequency=9.897e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=45/52
RA	4719	.	1	855491	0	T	C	consensus_score=267.1	frequency=1	major_base=C	major_cov=46/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/51
RA	4720	.	1	855500	0	T	C	consensus_score=241.7	frequency=1	major_base=C	major_cov=43/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/45
RA	4721	.	1	855503	0	C	G	consensus_score=240.0	frequency=1	major_base=G	major_cov=43/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/45
RA	4722	.	1	855504	0	C	T	consensus_score=248.9	frequency=1	major_base=T	major_cov=43/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/45
RA	4723	.	1	855506	0	C	G	consensus_score=245.0	frequency=1	major_base=G	major_cov=43/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/45
RA	4724	.	1	855521	0	C	T	consensus_score=248.2	frequency=1	major_base=T	major_cov=44/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/44
RA	4725	.	1	855533	0	C	A	consensus_score=241.1	frequency=1	major_base=A	major_cov=42/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/45
RA	4726	.	1	855539	0	A	G	consensus_score=242.6	frequency=1	major_base=G	major_cov=42/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/43
RA	4727	.	1	855542	0	T	G	consensus_score=240.0	frequency=1	major_base=G	major_cov=42/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/43
RA	4728	.	1	855557	0	T	C	consensus_score=225.2	frequency=1	major_base=C	major_cov=40/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/42
RA	4729	.	1	855563	0	T	C	consensus_score=243.8	frequency=1	major_base=C	major_cov=42/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/43
RA	4730	.	1	855572	0	G	T	bias_e_value=2103060	bias_p_value=1	consensus_score=255.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=45/45	major_frequency=9.890e-01	minor_base=C	minor_cov=1/0	new_cov=45/45	polymorphism_frequency=9.890e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/45
RA	4731	.	1	855575	0	G	C	consensus_score=253.1	frequency=1	major_base=C	major_cov=46/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/45
RA	4732	.	1	855578	0	G	C	consensus_score=260.2	frequency=1	major_base=C	major_cov=46/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/45
RA	4733	.	1	855602	0	T	C	consensus_score=275.0	frequency=1	major_base=C	major_cov=46/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/50
RA	4734	.	1	855605	0	A	G	consensus_score=268.2	frequency=1	major_base=G	major_cov=46/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/50
RA	4735	.	1	855626	0	G	C	consensus_score=261.5	frequency=1	major_base=C	major_cov=46/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/46
RA	4736	.	1	855629	0	A	G	consensus_score=258.4	frequency=1	major_base=G	major_cov=46/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/46
RA	4737	.	1	855671	0	A	C	consensus_score=274.3	frequency=1	major_base=C	major_cov=51/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/46
RA	4738	.	1	855713	0	C	T	bias_e_value=2103060	bias_p_value=1	consensus_score=280.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=55/45	major_frequency=9.901e-01	minor_base=C	minor_cov=1/0	new_cov=55/45	polymorphism_frequency=9.901e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=56/45
RA	4739	.	1	855725	0	T	C	consensus_score=257.5	frequency=1	major_base=C	major_cov=48/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/41
RA	4740	.	1	855728	0	G	A	consensus_score=241.7	frequency=1	major_base=A	major_cov=48/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/41
RA	4741	.	1	855729	0	G	A	consensus_score=243.3	frequency=1	major_base=A	major_cov=48/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/41
RA	4742	.	1	855731	0	T	C	consensus_score=251.4	frequency=1	major_base=C	major_cov=48/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/41
RA	4743	.	1	855737	0	T	C	consensus_score=276.6	frequency=1	major_base=C	major_cov=49/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/47
RA	4744	.	1	855745	0	G	T	consensus_score=270.0	frequency=1	major_base=T	major_cov=50/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/48
RA	4745	.	1	855755	0	G	C	consensus_score=273.6	frequency=1	major_base=C	major_cov=50/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/48
RA	4746	.	1	855758	0	A	C	consensus_score=273.7	frequency=1	major_base=C	major_cov=50/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/48
RA	4747	.	1	855761	0	T	C	consensus_score=271.9	frequency=1	major_base=C	major_cov=50/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/48
RA	4748	.	1	855779	0	T	A	consensus_score=281.0	frequency=1	major_base=A	major_cov=47/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/52
RA	4749	.	1	855791	0	T	C	consensus_score=277.8	frequency=1	major_base=C	major_cov=46/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/53
RA	4750	.	1	855794	0	T	C	consensus_score=272.9	frequency=1	major_base=C	major_cov=46/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/53
RA	4751	.	1	855797	0	G	C	consensus_score=274.2	frequency=1	major_base=C	major_cov=46/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/53
RA	4752	.	1	855940	0	A	G	consensus_score=224.5	frequency=1	major_base=G	major_cov=46/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/39
RA	4753	.	1	855970	0	A	G	consensus_score=255.5	frequency=1	major_base=G	major_cov=52/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/40
RA	4754	.	1	856157	0	T	G	consensus_score=145.0	frequency=1	major_base=G	major_cov=18/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/34
RA	4755	.	1	856158	0	T	C	consensus_score=148.9	frequency=1	major_base=C	major_cov=18/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/34
RA	4756	.	1	856159	0	C	A	consensus_score=144.4	frequency=1	major_base=A	major_cov=18/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/34
RA	4757	.	1	856160	0	C	G	consensus_score=143.7	frequency=1	major_base=G	major_cov=18/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/34
RA	4758	.	1	856164	1	.	G	consensus_score=142.9	frequency=1	major_base=G	major_cov=18/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/34
RA	4759	.	1	856169	0	G	.	consensus_score=219.5	frequency=1	major_base=.	major_cov=18/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/34
RA	4760	.	1	856172	0	T	C	consensus_score=141.3	frequency=1	major_base=C	major_cov=18/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/34
RA	4761	.	1	856181	0	A	G	consensus_score=144.3	frequency=1	major_base=G	major_cov=18/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/34
RA	4762	.	1	856190	0	A	G	consensus_score=147.1	frequency=1	major_base=G	major_cov=18/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/34
RA	4763	.	1	856193	0	C	A	consensus_score=139.5	frequency=1	major_base=A	major_cov=18/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/34
RA	4764	.	1	856199	0	T	G	consensus_score=146.4	frequency=1	major_base=G	major_cov=18/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/34
RA	4765	.	1	856208	0	G	C	consensus_score=103.7	frequency=1	major_base=C	major_cov=13/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/26
RA	4766	.	1	856211	0	C	T	consensus_score=110.7	frequency=1	major_base=T	major_cov=13/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/26
RA	4767	.	1	856214	0	G	C	consensus_score=103.7	frequency=1	major_base=C	major_cov=13/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/26
RA	4768	.	1	856220	0	C	T	consensus_score=104.9	frequency=1	major_base=T	major_cov=13/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/25
RA	4769	.	1	856223	0	A	G	consensus_score=103.3	frequency=1	major_base=G	major_cov=13/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/25
RA	4770	.	1	856229	0	C	T	consensus_score=98.2	frequency=1	major_base=T	major_cov=13/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/25
RA	4771	.	1	856238	0	C	G	consensus_score=93.4	frequency=1	major_base=G	major_cov=11/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/23
RA	4772	.	1	856241	0	C	T	consensus_score=89.3	frequency=1	major_base=T	major_cov=11/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/23
RA	4773	.	1	856250	0	C	A	bias_e_value=2103050	bias_p_value=0.999997	consensus_score=74.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.997704	major_base=A	major_cov=10/19	major_frequency=9.667e-01	minor_base=T	minor_cov=0/1	new_cov=10/19	polymorphism_frequency=9.667e-01	polymorphism_score=-3.4	prediction=consensus	ref_cov=0/0	total_cov=10/20
RA	4774	.	1	856257	0	T	C	consensus_score=71.5	frequency=1	major_base=C	major_cov=8/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/18
RA	4775	.	1	856274	0	T	A	consensus_score=55.3	deleted=1	frequency=1	major_base=A	major_cov=7/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/14
RA	4776	.	1	856277	0	A	G	consensus_score=54.8	deleted=1	frequency=1	major_base=G	major_cov=7/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/14
RA	4777	.	1	856283	0	T	G	consensus_score=40.0	deleted=1	frequency=1	major_base=G	major_cov=4/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/12
RA	4778	.	1	856286	0	C	G	consensus_score=40.6	deleted=1	frequency=1	major_base=G	major_cov=4/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/12
RA	4779	.	1	858223	0	T	C	consensus_score=43.5	frequency=1	major_base=C	major_cov=18/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/3
RA	4780	.	1	858846	0	C	T	consensus_score=291.9	frequency=1	major_base=T	major_cov=50/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/58
RA	4781	.	1	860289	0	G	A	consensus_score=213.8	frequency=1	major_base=A	major_cov=46/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/32
RA	4782	.	1	863850	0	C	A	consensus_score=316.0	frequency=1	major_base=A	major_cov=45/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/66
RA	4783	.	1	864566	0	G	A	consensus_score=196.7	frequency=1	major_base=A	major_cov=35/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/37
RA	4784	.	1	864780	0	C	T	consensus_score=272.1	frequency=1	major_base=T	major_cov=53/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/46
RA	4785	.	1	868297	0	G	T	consensus_score=228.5	frequency=1	major_base=T	major_cov=34/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/50
RA	4786	.	1	868367	0	A	G	consensus_score=255.1	frequency=1	major_base=G	major_cov=38/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/51
RA	4787	.	1	868369	0	C	T	consensus_score=252.7	frequency=1	major_base=T	major_cov=38/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/51
RA	4788	.	1	868637	0	C	T	consensus_score=297.8	frequency=1	major_base=T	major_cov=53/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/54
RA	4789	.	1	869352	0	A	G	consensus_score=242.1	frequency=1	major_base=G	major_cov=48/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/36
RA	4790	.	1	869905	0	C	T	consensus_score=228.8	frequency=1	major_base=T	major_cov=38/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/46
RA	4791	.	1	871919	0	T	C	consensus_score=233.4	frequency=1	major_base=C	major_cov=41/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/43
RA	4792	.	1	872414	0	T	G	bias_e_value=792742	bias_p_value=0.376947	consensus_score=212.1	fisher_strand_p_value=0.435897	frequency=1	ks_quality_p_value=0.278022	major_base=G	major_cov=44/33	major_frequency=9.872e-01	minor_base=T	minor_cov=0/1	new_cov=44/33	polymorphism_frequency=9.872e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=0/1	total_cov=44/34
RA	4793	.	1	873132	0	T	C	consensus_score=24.8	frequency=1	major_base=C	major_cov=4/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/7
RA	4794	.	1	874251	0	T	C	consensus_score=195.0	frequency=1	major_base=C	major_cov=31/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/38
RA	4795	.	1	874755	0	T	C	consensus_score=201.6	frequency=1	major_base=C	major_cov=43/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/28
RA	4796	.	1	875160	0	T	G	consensus_score=105.0	frequency=1	major_base=G	major_cov=19/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/20
RA	4797	.	1	876146	0	G	A	bias_e_value=1712920	bias_p_value=0.814489	consensus_score=116.2	fisher_strand_p_value=0.456522	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=25/20	major_frequency=9.783e-01	minor_base=G	minor_cov=0/1	new_cov=25/20	polymorphism_frequency=9.783e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=25/21
RA	4798	.	1	876420	0	T	C	consensus_score=206.3	frequency=1	major_base=C	major_cov=38/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/35
RA	4799	.	1	876566	0	T	G	bias_e_value=4.79075e-07	bias_p_value=2.27799e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=133.0	fisher_strand_p_value=6.77457e-15	frequency=3.243e-01	ks_quality_p_value=1	major_base=T	major_cov=5/45	major_frequency=6.757e-01	minor_base=G	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=3.243e-01	polymorphism_score=10.2	prediction=polymorphism	ref_cov=5/45	total_cov=29/45
RA	4800	.	1	876974	0	G	A	consensus_score=214.4	frequency=1	major_base=A	major_cov=44/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/36
RA	4801	.	1	877417	0	A	G	consensus_score=289.0	frequency=1	major_base=G	major_cov=51/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/53
RA	4802	.	1	877484	0	G	A	consensus_score=322.3	frequency=1	major_base=A	major_cov=51/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/66
RA	4803	.	1	879200	0	C	T	consensus_score=233.4	frequency=1	major_base=T	major_cov=41/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/42
RA	4804	.	1	879707	0	G	A	bias_e_value=1750240	bias_p_value=0.832234	consensus_score=267.9	fisher_strand_p_value=0.48	frequency=1	ks_quality_p_value=0.999798	major_base=A	major_cov=52/47	major_frequency=9.900e-01	minor_base=C	minor_cov=0/1	new_cov=52/47	polymorphism_frequency=9.900e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/48
RA	4805	.	1	880228	0	A	C	bias_e_value=2103060	bias_p_value=1	consensus_score=253.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999045	major_base=C	major_cov=48/43	major_frequency=9.891e-01	minor_base=A	minor_cov=1/0	new_cov=48/43	polymorphism_frequency=9.891e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=49/43
RA	4806	.	1	880427	0	G	A	consensus_score=284.6	frequency=1	major_base=A	major_cov=42/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/58
RA	4807	.	1	886199	0	T	C	consensus_score=249.2	frequency=1	major_base=C	major_cov=56/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/32
RA	4808	.	1	888642	0	C	T	consensus_score=217.1	frequency=1	major_base=T	major_cov=32/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/48
RA	4809	.	1	888699	0	T	C	consensus_score=232.9	frequency=1	major_base=C	major_cov=34/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/47
RA	4810	.	1	888897	1	.	T	consensus_score=80.0	frequency=1	major_base=T	major_cov=21/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/8
RA	4811	.	1	890561	0	T	C	consensus_score=231.6	frequency=1	major_base=C	major_cov=53/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/33
RA	4812	.	1	890714	0	G	T	consensus_score=238.7	frequency=1	major_base=T	major_cov=48/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/38
RA	4813	.	1	891624	0	T	C	consensus_score=238.6	frequency=1	major_base=C	major_cov=51/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/33
RA	4814	.	1	891898	0	A	G	consensus_score=186.5	frequency=1	major_base=G	major_cov=35/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/33
RA	4815	.	1	894837	0	T	G	consensus_score=231.1	frequency=1	major_base=G	major_cov=41/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/40
RA	4816	.	1	896335	0	A	G	consensus_score=206.4	frequency=1	major_base=G	major_cov=34/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/40
RA	4817	.	1	898437	0	C	T	consensus_score=235.4	frequency=1	major_base=T	major_cov=43/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/45
RA	4818	.	1	901979	0	A	G	consensus_score=184.1	frequency=1	major_base=G	major_cov=25/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/41
RA	4819	.	1	902457	0	G	T	consensus_score=214.0	frequency=1	major_base=T	major_cov=37/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/38
RA	4820	.	1	905405	0	C	A	bias_e_value=1655270	bias_p_value=0.787077	consensus_score=31.6	fisher_strand_p_value=0.4375	frequency=1	ks_quality_p_value=0.967216	major_base=A	major_cov=6/9	major_frequency=9.375e-01	minor_base=G	minor_cov=1/0	new_cov=6/9	polymorphism_frequency=9.375e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=0/0	total_cov=7/9
RA	4821	.	1	905896	0	T	C	consensus_score=153.8	frequency=1	major_base=C	major_cov=25/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/28
RA	4822	.	1	906838	0	A	G	consensus_score=147.1	frequency=1	major_base=G	major_cov=29/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/25
RA	4823	.	1	907496	0	G	T	consensus_score=70.8	frequency=1	major_base=T	major_cov=18/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/10
RA	4824	.	1	907660	0	A	T	consensus_score=17.2	deleted=1	frequency=1	major_base=T	major_cov=4/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/4
RA	4825	.	1	910158	0	G	C	consensus_score=41.7	deleted=1	frequency=1	major_base=C	major_cov=10/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/7
RA	4826	.	1	910204	0	G	A	consensus_score=80.5	frequency=1	major_base=A	major_cov=18/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/14
RA	4827	.	1	910266	0	C	T	consensus_score=113.4	frequency=1	major_base=T	major_cov=22/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/20
RA	4828	.	1	910336	0	C	T	consensus_score=177.4	frequency=1	major_base=T	major_cov=37/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/29
RA	4829	.	1	910338	0	G	A	consensus_score=176.4	frequency=1	major_base=A	major_cov=37/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/29
RA	4830	.	1	910353	0	G	A	consensus_score=188.1	frequency=1	major_base=A	major_cov=39/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/31
RA	4831	.	1	910362	0	A	G	consensus_score=206.8	frequency=1	major_base=G	major_cov=40/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/32
RA	4832	.	1	910380	0	G	C	consensus_score=216.9	frequency=1	major_base=C	major_cov=43/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/32
RA	4833	.	1	910389	0	G	A	consensus_score=192.0	frequency=1	major_base=A	major_cov=42/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/29
RA	4834	.	1	910401	0	T	C	consensus_score=180.5	frequency=1	major_base=C	major_cov=34/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/29
RA	4835	.	1	910407	0	A	T	consensus_score=172.4	frequency=1	major_base=T	major_cov=32/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/29
RA	4836	.	1	910413	0	G	T	consensus_score=164.0	frequency=1	major_base=T	major_cov=32/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/29
RA	4837	.	1	910419	0	A	G	consensus_score=153.3	frequency=1	major_base=G	major_cov=29/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/24
RA	4838	.	1	910420	0	C	T	consensus_score=140.0	frequency=1	major_base=T	major_cov=29/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/24
RA	4839	.	1	910424	0	G	A	consensus_score=141.4	frequency=1	major_base=A	major_cov=29/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/24
RA	4840	.	1	910425	0	A	G	consensus_score=152.7	frequency=1	major_base=G	major_cov=29/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/24
RA	4841	.	1	910428	0	G	T	consensus_score=139.0	frequency=1	major_base=T	major_cov=29/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/24
RA	4842	.	1	910446	0	T	C	consensus_score=171.2	frequency=1	major_base=C	major_cov=35/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/27
RA	4843	.	1	910452	0	T	C	consensus_score=167.9	frequency=1	major_base=C	major_cov=33/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/27
RA	4844	.	1	910461	0	G	T	consensus_score=169.2	frequency=1	major_base=T	major_cov=36/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/27
RA	4845	.	1	910485	0	G	A	consensus_score=181.5	frequency=1	major_base=A	major_cov=37/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/27
RA	4846	.	1	910494	0	C	A	consensus_score=175.3	frequency=1	major_base=A	major_cov=37/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/28
RA	4847	.	1	910497	0	A	C	consensus_score=187.5	frequency=1	major_base=C	major_cov=37/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/28
RA	4848	.	1	910503	0	C	T	consensus_score=180.9	frequency=1	major_base=T	major_cov=40/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/27
RA	4849	.	1	910509	0	A	G	consensus_score=187.6	frequency=1	major_base=G	major_cov=38/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/27
RA	4850	.	1	910788	0	A	G	consensus_score=150.1	frequency=1	major_base=G	major_cov=23/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/31
RA	4851	.	1	910793	0	C	T	consensus_score=152.9	frequency=1	major_base=T	major_cov=22/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/32
RA	4852	.	1	910917	0	G	A	consensus_score=163.5	frequency=1	major_base=A	major_cov=28/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/34
RA	4853	.	1	910931	0	G	A	consensus_score=168.2	frequency=1	major_base=A	major_cov=29/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/33
RA	4854	.	1	911135	0	C	G	consensus_score=146.6	frequency=1	major_base=G	major_cov=23/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/30
RA	4855	.	1	911258	0	G	A	consensus_score=25.0	frequency=1	major_base=A	major_cov=6/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/5
RA	4856	.	1	911281	0	G	A	consensus_score=24.6	frequency=1	major_base=A	major_cov=7/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/4
RA	4857	.	1	911286	0	A	T	consensus_score=27.7	frequency=1	major_base=T	major_cov=8/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/4
RA	4858	.	1	911312	0	G	A	consensus_score=39.8	frequency=1	major_base=A	major_cov=13/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/4
RA	4859	.	1	911314	0	G	A	consensus_score=40.8	frequency=1	major_base=A	major_cov=13/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/4
RA	4860	.	1	911419	0	G	A	consensus_score=78.6	frequency=1	major_base=A	major_cov=20/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/11
RA	4861	.	1	911444	0	T	C	consensus_score=79.6	frequency=1	major_base=C	major_cov=19/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/11
RA	4862	.	1	911448	0	G	A	consensus_score=74.9	frequency=1	major_base=A	major_cov=19/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/11
RA	4863	.	1	911452	0	G	A	consensus_score=72.8	frequency=1	major_base=A	major_cov=18/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/11
RA	4864	.	1	911455	0	C	A	consensus_score=74.2	frequency=1	major_base=A	major_cov=18/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/11
RA	4865	.	1	911517	0	C	T	consensus_score=46.1	deleted=1	frequency=1	major_base=T	major_cov=10/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/9
RA	4866	.	1	911520	0	T	C	consensus_score=50.3	deleted=1	frequency=1	major_base=C	major_cov=10/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/9
RA	4867	.	1	911565	0	C	G	consensus_score=11.0	deleted=1	frequency=1	major_base=G	major_cov=2/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=2/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=2/4
RA	4868	.	1	911568	0	G	A	consensus_score=11.0	deleted=1	frequency=1	major_base=A	major_cov=2/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=2/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=2/4
RA	4869	.	1	914108	0	G	A	consensus_score=154.2	frequency=1	major_base=A	major_cov=27/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/30
RA	4870	.	1	914234	0	A	G	consensus_score=167.0	frequency=1	major_base=G	major_cov=30/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/31
RA	4871	.	1	914470	0	A	C	consensus_score=244.1	frequency=1	major_base=C	major_cov=38/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/51
RA	4872	.	1	914628	0	G	T	consensus_score=219.2	frequency=1	major_base=T	major_cov=41/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/38
RA	4873	.	1	915604	0	T	C	consensus_score=185.7	frequency=1	major_base=C	major_cov=36/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/31
RA	4874	.	1	915719	0	G	T	consensus_score=173.0	frequency=1	major_base=T	major_cov=36/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/28
RA	4875	.	1	916497	0	T	G	consensus_score=149.2	frequency=1	major_base=G	major_cov=31/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/25
RA	4876	.	1	917849	0	A	G	consensus_score=209.7	frequency=1	major_base=G	major_cov=39/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/36
RA	4877	.	1	919138	0	T	G	consensus_score=179.5	frequency=1	major_base=G	major_cov=40/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/23
RA	4878	.	1	919141	0	A	G	consensus_score=170.6	frequency=1	major_base=G	major_cov=40/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/23
RA	4879	.	1	919376	0	T	C	consensus_score=180.4	frequency=1	major_base=C	major_cov=37/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/28
RA	4880	.	1	920376	0	A	G	consensus_score=241.0	frequency=1	major_base=G	major_cov=49/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/36
RA	4881	.	1	921208	0	G	A	consensus_score=167.2	frequency=1	major_base=A	major_cov=29/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/34
RA	4882	.	1	921993	0	T	C	consensus_score=182.8	frequency=1	major_base=C	major_cov=38/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/31
RA	4883	.	1	924634	0	T	C	consensus_score=120.1	frequency=1	major_base=C	major_cov=21/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/22
RA	4884	.	1	924869	0	C	A	bias_e_value=2098240	bias_p_value=0.997709	consensus_score=50.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.93308	major_base=A	major_cov=7/14	major_frequency=9.545e-01	minor_base=G	minor_cov=0/1	new_cov=7/14	polymorphism_frequency=9.545e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=0/0	total_cov=7/15
RA	4885	.	1	925658	0	T	C	consensus_score=117.8	frequency=1	major_base=C	major_cov=24/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/20
RA	4886	.	1	925812	0	A	G	consensus_score=249.0	frequency=1	major_base=G	major_cov=48/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/42
RA	4887	.	1	925990	0	T	C	consensus_score=193.5	frequency=1	major_base=C	major_cov=38/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/33
RA	4888	.	1	929370	0	T	C	consensus_score=274.3	frequency=1	major_base=C	major_cov=51/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/45
RA	4889	.	1	929766	0	A	.	consensus_score=367.1	frequency=1	major_base=.	major_cov=49/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/37
RA	4890	.	1	929821	0	G	A	bias_e_value=1682080	bias_p_value=0.799825	consensus_score=248.9	fisher_strand_p_value=0.44086	frequency=1	ks_quality_p_value=0.994173	major_base=A	major_cov=52/40	major_frequency=9.892e-01	minor_base=.	minor_cov=0/1	new_cov=52/40	polymorphism_frequency=9.892e-01	polymorphism_score=-3.4	prediction=consensus	ref_cov=0/0	total_cov=52/41
RA	4891	.	1	930652	0	C	A	consensus_score=235.0	frequency=1	major_base=A	major_cov=38/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/48
RA	4892	.	1	931397	0	G	A	consensus_score=127.7	frequency=1	major_base=A	major_cov=27/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/21
RA	4893	.	1	931742	0	G	A	consensus_score=137.0	frequency=1	major_base=A	major_cov=26/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/26
RA	4894	.	1	932723	0	C	T	consensus_score=199.6	frequency=1	major_base=T	major_cov=40/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/33
RA	4895	.	1	932812	0	G	T	consensus_score=198.5	frequency=1	major_base=T	major_cov=36/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/34
RA	4896	.	1	933036	0	T	G	bias_e_value=5.46151e-05	bias_p_value=2.59694e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=84.2	fisher_strand_p_value=9.03845e-13	frequency=4.154e-01	ks_quality_p_value=1	major_base=T	major_cov=6/32	major_frequency=5.846e-01	minor_base=G	minor_cov=27/0	new_cov=27/0	polymorphism_frequency=4.154e-01	polymorphism_score=10.6	prediction=polymorphism	ref_cov=6/32	total_cov=33/32
RA	4897	.	1	933467	0	A	G	consensus_score=163.0	frequency=1	major_base=G	major_cov=26/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/32
RA	4898	.	1	933490	0	G	A	consensus_score=167.8	frequency=1	major_base=A	major_cov=27/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/35
RA	4899	.	1	933504	0	G	A	bias_e_value=2103060	bias_p_value=1	consensus_score=165.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=26/36	major_frequency=9.841e-01	minor_base=C	minor_cov=0/1	new_cov=26/36	polymorphism_frequency=9.841e-01	polymorphism_score=-7.3	prediction=consensus	ref_cov=0/0	total_cov=26/37
RA	4900	.	1	933712	0	T	C	consensus_score=231.7	frequency=1	major_base=C	major_cov=41/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/40
RA	4901	.	1	934444	0	G	T	consensus_score=93.2	frequency=1	major_base=T	major_cov=21/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/15
RA	4902	.	1	937064	0	G	A	consensus_score=229.5	frequency=1	major_base=A	major_cov=35/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/53
RA	4903	.	1	938104	0	C	T	consensus_score=84.1	frequency=1	major_base=T	major_cov=13/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/21
RA	4904	.	1	938363	0	C	T	consensus_score=131.3	frequency=1	major_base=T	major_cov=25/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/24
RA	4905	.	1	940148	0	C	T	consensus_score=182.5	frequency=1	major_base=T	major_cov=45/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/23
RA	4906	.	1	940326	0	C	G	consensus_score=220.6	frequency=1	major_base=G	major_cov=44/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/36
RA	4907	.	1	940406	0	T	C	consensus_score=235.6	frequency=1	major_base=C	major_cov=44/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/41
RA	4908	.	1	943681	0	C	T	bias_e_value=0.00146743	bias_p_value=6.97762e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=77.5	fisher_strand_p_value=2.75637e-11	frequency=2.545e-01	ks_quality_p_value=1	major_base=C	major_cov=2/39	major_frequency=7.455e-01	minor_base=T	minor_cov=14/0	new_cov=14/0	polymorphism_frequency=2.545e-01	polymorphism_score=11.8	prediction=polymorphism	ref_cov=2/39	total_cov=17/39
RA	4909	.	1	944960	0	C	T	bias_e_value=2103060	bias_p_value=1	consensus_score=239.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=48/40	major_frequency=9.888e-01	minor_base=A	minor_cov=1/0	new_cov=48/40	polymorphism_frequency=9.888e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/40
RA	4910	.	1	945015	0	A	C	consensus_score=222.7	frequency=1	major_base=C	major_cov=49/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/28
RA	4911	.	1	945812	0	C	T	bias_e_value=2103060	bias_p_value=1	consensus_score=208.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999675	major_base=T	major_cov=30/48	major_frequency=9.873e-01	minor_base=C	minor_cov=0/1	new_cov=30/48	polymorphism_frequency=9.873e-01	polymorphism_score=-5.0	prediction=consensus	ref_cov=0/1	total_cov=30/49
RA	4912	.	1	946503	0	A	C	consensus_score=240.3	frequency=1	major_base=C	major_cov=44/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/42
RA	4913	.	1	947437	0	T	C	consensus_score=156.7	frequency=1	major_base=C	major_cov=25/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/30
RA	4914	.	1	947942	0	T	C	bias_e_value=2103060	bias_p_value=1	consensus_score=174.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=31/32	major_frequency=9.844e-01	minor_base=T	minor_cov=0/1	new_cov=31/32	polymorphism_frequency=9.844e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=31/33
RA	4915	.	1	948211	0	G	A	bias_e_value=785205	bias_p_value=0.373364	consensus_score=137.7	fisher_strand_p_value=0.119497	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=17/35	major_frequency=9.630e-01	minor_base=G	minor_cov=2/0	new_cov=17/35	polymorphism_frequency=9.630e-01	polymorphism_score=NA	prediction=consensus	ref_cov=2/0	total_cov=21/35
RA	4916	.	1	948598	0	T	C	consensus_score=218.6	frequency=1	major_base=C	major_cov=34/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/45
RA	4917	.	1	949049	0	T	C	consensus_score=220.6	frequency=1	major_base=C	major_cov=43/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/36
RA	4918	.	1	951127	0	G	A	consensus_score=181.5	frequency=1	major_base=A	major_cov=36/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/31
RA	4919	.	1	951229	0	T	C	consensus_score=188.0	frequency=1	major_base=C	major_cov=36/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/32
RA	4920	.	1	951517	0	T	C	consensus_score=267.1	frequency=1	major_base=C	major_cov=43/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/54
RA	4921	.	1	952363	0	G	A	bias_e_value=1298160	bias_p_value=0.617272	consensus_score=265.7	fisher_strand_p_value=0.351064	frequency=1	ks_quality_p_value=0.75559	major_base=A	major_cov=61/32	major_frequency=9.894e-01	minor_base=.	minor_cov=0/1	new_cov=61/32	polymorphism_frequency=9.894e-01	polymorphism_score=-3.5	prediction=consensus	ref_cov=0/0	total_cov=61/33
RA	4922	.	1	952430	0	G	T	consensus_score=279.1	frequency=1	major_base=T	major_cov=63/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/34
RA	4923	.	1	952617	0	T	C	bias_e_value=2103060	bias_p_value=1	consensus_score=263.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999781	major_base=C	major_cov=48/47	major_frequency=9.896e-01	minor_base=T	minor_cov=0/1	new_cov=48/47	polymorphism_frequency=9.896e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=48/48
RA	4924	.	1	956189	0	C	T	consensus_score=277.7	frequency=1	major_base=T	major_cov=40/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/57
RA	4925	.	1	956257	0	T	G	consensus_score=239.1	frequency=1	major_base=G	major_cov=37/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/48
RA	4926	.	1	956260	0	G	A	consensus_score=241.0	frequency=1	major_base=A	major_cov=37/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/48
RA	4927	.	1	956775	0	A	C	consensus_score=260.5	frequency=1	major_base=C	major_cov=37/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/53
RA	4928	.	1	958891	0	G	A	consensus_score=211.6	frequency=1	major_base=A	major_cov=43/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/36
RA	4929	.	1	962927	0	A	G	consensus_score=207.0	frequency=1	major_base=G	major_cov=34/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/40
RA	4930	.	1	963414	0	A	G	consensus_score=202.9	frequency=1	major_base=G	major_cov=44/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/30
RA	4931	.	1	963757	0	G	A	consensus_score=206.7	frequency=1	major_base=A	major_cov=38/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/39
RA	4932	.	1	964821	0	T	C	bias_e_value=1548650	bias_p_value=0.736381	consensus_score=185.2	fisher_strand_p_value=0.394737	frequency=1	ks_quality_p_value=0.93354	major_base=C	major_cov=46/29	major_frequency=9.868e-01	minor_base=G	minor_cov=0/1	new_cov=46/29	polymorphism_frequency=9.868e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/30
RA	4933	.	1	964908	0	C	T	bias_e_value=1.01852e-05	bias_p_value=4.84306e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=121.4	fisher_strand_p_value=1.58944e-13	frequency=2.658e-01	ks_quality_p_value=1	major_base=C	major_cov=51/7	major_frequency=7.342e-01	minor_base=T	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=2.658e-01	polymorphism_score=13.4	prediction=polymorphism	ref_cov=51/7	total_cov=51/28
RA	4934	.	1	966446	0	G	T	bias_e_value=15568.2	bias_p_value=0.00740264	consensus_score=122.6	fisher_strand_p_value=0.00092727	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=34/16	major_frequency=8.772e-01	minor_base=C	minor_cov=0/7	new_cov=34/16	polymorphism_frequency=8.772e-01	polymorphism_score=-5.3	prediction=consensus	ref_cov=0/0	total_cov=34/23
RA	4935	.	1	969328	0	G	A	bias_e_value=2103060	bias_p_value=1	consensus_score=238.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999739	major_base=A	major_cov=36/51	major_frequency=9.886e-01	minor_base=C	minor_cov=0/1	new_cov=36/51	polymorphism_frequency=9.886e-01	polymorphism_score=-6.5	prediction=consensus	ref_cov=0/0	total_cov=36/52
RA	4936	.	1	971204	0	T	C	consensus_score=191.0	frequency=1	major_base=C	major_cov=43/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/26
RA	4937	.	1	971258	0	T	C	consensus_score=204.1	frequency=1	major_base=C	major_cov=46/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/27
RA	4938	.	1	973250	0	A	G	consensus_score=267.5	frequency=1	major_base=G	major_cov=47/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/49
RA	4939	.	1	974838	0	C	T	consensus_score=215.4	frequency=1	major_base=T	major_cov=40/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/38
RA	4940	.	1	975035	0	C	T	consensus_score=223.1	frequency=1	major_base=T	major_cov=31/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/51
RA	4941	.	1	975356	0	A	G	consensus_score=254.0	frequency=1	major_base=G	major_cov=47/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/44
RA	4942	.	1	975363	0	C	T	consensus_score=258.5	frequency=1	major_base=T	major_cov=46/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/45
RA	4943	.	1	976461	0	C	T	consensus_score=251.4	frequency=1	major_base=T	major_cov=48/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/45
RA	4944	.	1	976578	0	C	T	consensus_score=261.6	frequency=1	major_base=T	major_cov=48/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/48
RA	4945	.	1	976846	0	A	C	consensus_score=242.2	frequency=1	major_base=C	major_cov=45/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/42
RA	4946	.	1	976997	0	C	T	consensus_score=211.0	frequency=1	major_base=T	major_cov=36/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/43
RA	4947	.	1	978845	0	T	G	consensus_score=302.3	frequency=1	major_base=G	major_cov=59/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/46
RA	4948	.	1	979068	0	C	T	consensus_score=220.5	frequency=1	major_base=T	major_cov=43/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/37
RA	4949	.	1	980316	0	C	A	consensus_score=209.6	frequency=1	major_base=A	major_cov=41/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/36
RA	4950	.	1	980355	0	T	C	consensus_score=230.7	frequency=1	major_base=C	major_cov=43/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/40
RA	4951	.	1	981684	0	G	A	consensus_score=177.9	frequency=1	major_base=A	major_cov=24/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/38
RA	4952	.	1	981796	0	A	G	consensus_score=94.9	frequency=1	major_base=G	major_cov=19/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/18
RA	4953	.	1	982618	0	T	C	consensus_score=233.5	frequency=1	major_base=C	major_cov=43/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/38
RA	4954	.	1	983573	0	G	A	consensus_score=187.0	frequency=1	major_base=A	major_cov=29/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/37
RA	4955	.	1	983820	0	T	C	consensus_score=140.4	frequency=1	major_base=C	major_cov=30/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/20
RA	4956	.	1	983852	0	T	C	consensus_score=129.6	frequency=1	major_base=C	major_cov=26/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/20
RA	4957	.	1	983911	1	.	C	bias_e_value=562489	bias_p_value=0.267463	consensus_score=98.2	fisher_strand_p_value=0.106029	frequency=1	ks_quality_p_value=0.700784	major_base=C	major_cov=16/20	major_frequency=9.000e-01	minor_base=.	minor_cov=4/0	new_cov=16/20	polymorphism_frequency=9.000e-01	polymorphism_score=6.8	prediction=consensus	ref_cov=4/0	total_cov=20/20
RA	4958	.	1	983911	2	.	C	bias_e_value=1440700	bias_p_value=0.685049	consensus_score=92.9	fisher_strand_p_value=0.341649	frequency=1	ks_quality_p_value=0.937737	major_base=C	major_cov=16/19	major_frequency=8.750e-01	minor_base=.	minor_cov=4/1	new_cov=16/19	polymorphism_frequency=8.750e-01	polymorphism_score=10.5	prediction=consensus	ref_cov=4/1	total_cov=20/20
RA	4959	.	1	984652	0	C	G	consensus_score=194.8	frequency=1	major_base=G	major_cov=28/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/43
RA	4960	.	1	986584	0	G	T	bias_e_value=1471590	bias_p_value=0.699739	consensus_score=140.0	fisher_strand_p_value=0.339623	frequency=1	ks_quality_p_value=0.982021	major_base=T	major_cov=35/17	major_frequency=9.811e-01	minor_base=G	minor_cov=0/1	new_cov=35/17	polymorphism_frequency=9.811e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=0/1	total_cov=35/18
RA	4961	.	1	986914	0	T	C	consensus_score=147.7	frequency=1	major_base=C	major_cov=32/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/26
RA	4962	.	1	989410	0	T	C	consensus_score=221.6	frequency=1	major_base=C	major_cov=38/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/42
RA	4963	.	1	991367	0	T	C	consensus_score=23.4	frequency=1	major_base=C	major_cov=0/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=0/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=0/14
RA	4964	.	1	991626	0	C	T	consensus_score=162.3	frequency=1	major_base=T	major_cov=30/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/32
RA	4965	.	1	991761	0	C	T	bias_e_value=2103060	bias_p_value=1	consensus_score=88.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=18/17	major_frequency=9.722e-01	minor_base=C	minor_cov=1/0	new_cov=18/17	polymorphism_frequency=9.722e-01	polymorphism_score=-5.9	prediction=consensus	ref_cov=1/0	total_cov=19/17
RA	4966	.	1	991814	0	C	T	consensus_score=82.9	frequency=1	major_base=T	major_cov=17/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/15
RA	4967	.	1	992086	0	A	G	consensus_score=98.3	frequency=1	major_base=G	major_cov=21/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/17
RA	4968	.	1	993070	0	T	C	consensus_score=185.8	frequency=1	major_base=C	major_cov=35/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/29
RA	4969	.	1	995699	0	C	T	consensus_score=267.5	frequency=1	major_base=T	major_cov=35/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/57
RA	4970	.	1	996804	0	A	G	consensus_score=111.0	frequency=1	major_base=G	major_cov=30/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/12
RA	4971	.	1	997446	0	C	T	consensus_score=161.5	frequency=1	major_base=T	major_cov=32/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/27
RA	4972	.	1	999948	0	A	G	bias_e_value=2091600	bias_p_value=0.994555	consensus_score=185.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.897472	major_base=G	major_cov=34/30	major_frequency=9.846e-01	minor_base=.	minor_cov=1/0	new_cov=34/30	polymorphism_frequency=9.846e-01	polymorphism_score=-3.2	prediction=consensus	ref_cov=0/0	total_cov=35/30
RA	4973	.	1	1000414	0	T	C	consensus_score=194.2	frequency=1	major_base=C	major_cov=37/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/33
RA	4974	.	1	1001840	0	C	T	consensus_score=149.7	frequency=1	major_base=T	major_cov=34/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/21
RA	4975	.	1	1003307	0	C	T	consensus_score=127.5	frequency=1	major_base=T	major_cov=20/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/28
RA	4976	.	1	1003308	0	T	C	consensus_score=132.7	frequency=1	major_base=C	major_cov=20/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/28
RA	4977	.	1	1003516	0	G	A	consensus_score=142.6	frequency=1	major_base=A	major_cov=23/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/30
RA	4978	.	1	1003622	1	.	G	consensus_score=185.5	frequency=1	major_base=G	major_cov=30/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/39
RA	4979	.	1	1003979	0	G	T	consensus_score=107.1	frequency=1	major_base=T	major_cov=23/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/16
RA	4980	.	1	1005083	0	T	C	bias_e_value=2103060	bias_p_value=1	consensus_score=60.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=12/12	major_frequency=9.600e-01	minor_base=T	minor_cov=1/0	new_cov=12/12	polymorphism_frequency=9.600e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=13/12
RA	4981	.	1	1005262	0	T	C	consensus_score=126.5	frequency=1	major_base=C	major_cov=24/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/22
RA	4982	.	1	1005973	0	C	A	bias_e_value=2103060	bias_p_value=1	consensus_score=146.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=27/28	major_frequency=9.821e-01	minor_base=G	minor_cov=0/1	new_cov=27/28	polymorphism_frequency=9.821e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/29
RA	4983	.	1	1006782	0	T	C	consensus_score=195.9	frequency=1	major_base=C	major_cov=30/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/38
RA	4984	.	1	1008810	0	T	C	consensus_score=224.5	frequency=1	major_base=C	major_cov=45/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/36
RA	4985	.	1	1009314	0	C	.	consensus_score=80.1	frequency=1	major_base=.	major_cov=12/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/8
RA	4986	.	1	1009315	0	T	.	consensus_score=80.1	frequency=1	major_base=.	major_cov=12/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/8
RA	4987	.	1	1009316	0	T	.	consensus_score=80.1	frequency=1	major_base=.	major_cov=12/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/8
RA	4988	.	1	1009317	0	G	.	consensus_score=80.1	frequency=1	major_base=.	major_cov=12/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/8
RA	4989	.	1	1009318	0	C	.	consensus_score=80.1	frequency=1	major_base=.	major_cov=12/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/8
RA	4990	.	1	1009319	0	C	.	consensus_score=80.1	frequency=1	major_base=.	major_cov=12/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/8
RA	4991	.	1	1009320	0	T	.	consensus_score=80.1	frequency=1	major_base=.	major_cov=12/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/8
RA	4992	.	1	1009321	0	T	.	consensus_score=80.1	frequency=1	major_base=.	major_cov=12/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/8
RA	4993	.	1	1009322	0	G	.	consensus_score=80.1	frequency=1	major_base=.	major_cov=12/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/8
RA	4994	.	1	1009323	0	C	.	consensus_score=80.1	frequency=1	major_base=.	major_cov=12/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/8
RA	4995	.	1	1009752	0	C	A	consensus_score=22.2	deleted=1	frequency=1	major_base=A	major_cov=2/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=2/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=2/8
RA	4996	.	1	1010878	0	A	G	consensus_score=140.3	frequency=1	major_base=G	major_cov=24/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/25
RA	4997	.	1	1012847	0	G	A	consensus_score=145.7	frequency=1	major_base=A	major_cov=30/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/24
RA	4998	.	1	1013061	0	G	A	consensus_score=193.8	frequency=1	major_base=A	major_cov=33/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/39
RA	4999	.	1	1013715	0	G	T	consensus_score=90.2	frequency=1	major_base=T	major_cov=17/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/18
RA	5000	.	1	1014927	0	A	C	consensus_score=83.0	frequency=1	major_base=C	major_cov=20/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/10
RA	5001	.	1	1022790	0	G	A	consensus_score=206.3	frequency=1	major_base=A	major_cov=40/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/37
RA	5002	.	1	1024365	0	T	G	consensus_score=215.9	frequency=1	major_base=G	major_cov=40/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/36
RA	5003	.	1	1025097	0	T	G	consensus_score=195.0	frequency=1	major_base=G	major_cov=37/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/34
RA	5004	.	1	1026194	0	T	A	consensus_score=263.7	frequency=1	major_base=A	major_cov=51/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/46
RA	5005	.	1	1027246	0	T	C	bias_e_value=1505180	bias_p_value=0.715709	consensus_score=220.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.348357	major_base=C	major_cov=38/40	major_frequency=9.873e-01	minor_base=.	minor_cov=0/1	new_cov=38/40	polymorphism_frequency=9.873e-01	polymorphism_score=-3.3	prediction=consensus	ref_cov=0/0	total_cov=38/41
RA	5006	.	1	1027665	0	T	G	consensus_score=152.2	frequency=1	major_base=G	major_cov=27/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/27
RA	5007	.	1	1027668	0	A	G	consensus_score=146.2	frequency=1	major_base=G	major_cov=27/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/27
RA	5008	.	1	1027756	0	A	G	consensus_score=204.0	frequency=1	major_base=G	major_cov=32/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/42
RA	5009	.	1	1030197	0	C	T	consensus_score=27.6	deleted=1	frequency=1	major_base=T	major_cov=5/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/7
RA	5010	.	1	1030222	0	T	G	consensus_score=23.8	deleted=1	frequency=1	major_base=G	major_cov=6/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/4
RA	5011	.	1	1031075	0	T	C	consensus_score=92.0	frequency=1	major_base=C	major_cov=18/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/15
RA	5012	.	1	1031478	0	C	T	consensus_score=75.5	frequency=1	major_base=T	major_cov=15/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/14
RA	5013	.	1	1031538	0	G	A	consensus_score=34.9	frequency=1	major_base=A	major_cov=10/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/5
RA	5014	.	1	1031557	0	G	T	consensus_score=44.3	frequency=1	major_base=T	major_cov=12/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/6
RA	5015	.	1	1031824	0	C	T	consensus_score=148.9	frequency=1	major_base=T	major_cov=38/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/16
RA	5016	.	1	1032305	0	T	.	bias_e_value=1944500	bias_p_value=0.924605	consensus_score=227.8	fisher_strand_p_value=0.644986	frequency=1	ks_quality_p_value=0.988745	major_base=.	major_cov=33/24	major_frequency=9.194e-01	minor_base=C	minor_cov=2/3	new_cov=33/24	polymorphism_frequency=9.194e-01	polymorphism_score=14.4	prediction=consensus	ref_cov=0/0	total_cov=35/27
RA	5017	.	1	1032306	0	T	.	bias_e_value=1575580	bias_p_value=0.749185	consensus_score=199.1	fisher_strand_p_value=0.387055	frequency=1	ks_quality_p_value=0.985795	major_base=.	major_cov=33/22	major_frequency=9.016e-01	minor_base=T	minor_cov=2/4	new_cov=33/22	polymorphism_frequency=9.016e-01	polymorphism_score=18.4	prediction=consensus	ref_cov=2/4	total_cov=35/27
RA	5018	.	1	1032360	0	C	A	bias_e_value=686296	bias_p_value=0.326333	consensus_reject=FREQUENCY_CUTOFF	consensus_score=150.1	fisher_strand_p_value=0.101329	frequency=2.237e-01	ks_quality_p_value=0.970125	major_base=C	major_cov=35/24	major_frequency=7.763e-01	minor_base=A	minor_cov=6/11	new_cov=6/11	polymorphism_frequency=2.237e-01	polymorphism_score=35.3	prediction=polymorphism	ref_cov=35/24	total_cov=41/35
RA	5019	.	1	1032504	0	C	T	consensus_score=66.5	frequency=1	major_base=T	major_cov=11/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/16
RA	5020	.	1	1032618	0	A	C	consensus_score=94.6	frequency=1	major_base=C	major_cov=20/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/15
RA	5021	.	1	1033021	0	A	G	consensus_score=158.3	frequency=1	major_base=G	major_cov=32/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/26
RA	5022	.	1	1033820	0	T	C	consensus_score=135.5	frequency=1	major_base=C	major_cov=22/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/28
RA	5023	.	1	1033875	0	T	C	consensus_score=133.2	frequency=1	major_base=C	major_cov=21/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/29
RA	5024	.	1	1033915	0	C	T	consensus_score=146.4	frequency=1	major_base=T	major_cov=25/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/29
RA	5025	.	1	1034142	0	C	G	consensus_score=183.9	frequency=1	major_base=G	major_cov=31/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/34
RA	5026	.	1	1034217	0	G	A	consensus_score=181.6	frequency=1	major_base=A	major_cov=35/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/30
RA	5027	.	1	1034240	1	.	G	bias_e_value=334418	bias_p_value=0.159015	consensus_score=189.4	fisher_strand_p_value=0.0370098	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=39/28	major_frequency=9.437e-01	minor_base=.	minor_cov=0/4	new_cov=39/28	polymorphism_frequency=9.437e-01	polymorphism_score=2.5	prediction=consensus	ref_cov=0/4	total_cov=39/32
RA	5028	.	1	1037939	0	A	G	consensus_score=191.3	frequency=1	major_base=G	major_cov=28/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/39
RA	5029	.	1	1038477	0	A	G	consensus_score=158.0	frequency=1	major_base=G	major_cov=28/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/30
RA	5030	.	1	1038830	0	C	T	bias_e_value=109696	bias_p_value=0.0521602	consensus_score=72.3	fisher_strand_p_value=0.00925047	frequency=1	ks_quality_p_value=0.990521	major_base=T	major_cov=20/10	major_frequency=8.571e-01	minor_base=G	minor_cov=0/5	new_cov=20/10	polymorphism_frequency=8.571e-01	polymorphism_score=-2.1	prediction=consensus	ref_cov=0/0	total_cov=20/15
RA	5031	.	1	1038842	0	C	A	bias_e_value=0.169095	bias_p_value=8.04043e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=30.1	fisher_strand_p_value=3.95122e-09	frequency=3.889e-01	ks_quality_p_value=1	major_base=C	major_cov=21/1	major_frequency=6.111e-01	minor_base=A	minor_cov=0/14	new_cov=0/14	polymorphism_frequency=3.889e-01	polymorphism_score=23.4	prediction=polymorphism	ref_cov=21/1	total_cov=21/15
RA	5032	.	1	1040104	0	T	C	consensus_score=193.4	frequency=1	major_base=C	major_cov=34/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/33
RA	5033	.	1	1041002	0	A	G	consensus_score=221.8	frequency=1	major_base=G	major_cov=40/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/37
RA	5034	.	1	1042446	0	C	T	consensus_score=209.7	frequency=1	major_base=T	major_cov=42/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/31
RA	5035	.	1	1044239	0	G	T	consensus_score=198.9	frequency=1	major_base=T	major_cov=40/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/31
RA	5036	.	1	1044289	0	G	T	consensus_score=196.2	frequency=1	major_base=T	major_cov=36/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/33
RA	5037	.	1	1044471	0	G	A	consensus_score=189.8	frequency=1	major_base=A	major_cov=37/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/30
RA	5038	.	1	1044773	0	A	G	consensus_score=179.5	frequency=1	major_base=G	major_cov=26/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/39
RA	5039	.	1	1044865	0	G	A	consensus_score=194.4	frequency=1	major_base=A	major_cov=38/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/34
RA	5040	.	1	1045282	0	A	G	consensus_score=256.9	frequency=1	major_base=G	major_cov=42/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/48
RA	5041	.	1	1045414	0	C	A	consensus_score=166.0	frequency=1	major_base=A	major_cov=37/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/24
RA	5042	.	1	1047270	0	A	C	consensus_score=213.6	frequency=1	major_base=C	major_cov=29/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/48
RA	5043	.	1	1048205	0	T	C	consensus_score=212.8	frequency=1	major_base=C	major_cov=41/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/36
RA	5044	.	1	1048676	0	T	C	consensus_score=233.8	frequency=1	major_base=C	major_cov=44/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/39
RA	5045	.	1	1049233	0	G	.	consensus_score=93.0	frequency=1	major_base=.	major_cov=11/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/12
RA	5046	.	1	1049310	0	T	C	consensus_score=87.4	frequency=1	major_base=C	major_cov=16/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/16
RA	5047	.	1	1049320	0	G	A	consensus_score=85.6	frequency=1	major_base=A	major_cov=16/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/18
RA	5048	.	1	1050041	0	T	C	consensus_score=162.5	frequency=1	major_base=C	major_cov=29/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/30
RA	5049	.	1	1050632	0	C	T	consensus_score=142.9	frequency=1	major_base=T	major_cov=28/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/26
RA	5050	.	1	1051069	0	G	A	consensus_score=152.5	frequency=1	major_base=A	major_cov=35/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/22
RA	5051	.	1	1051406	0	G	A	consensus_score=213.8	frequency=1	major_base=A	major_cov=40/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/38
RA	5052	.	1	1051740	0	C	T	consensus_score=192.7	frequency=1	major_base=T	major_cov=41/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/30
RA	5053	.	1	1052887	0	A	G	consensus_score=179.6	frequency=1	major_base=G	major_cov=36/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/30
RA	5054	.	1	1053043	0	A	G	consensus_score=148.0	frequency=1	major_base=G	major_cov=30/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/22
RA	5055	.	1	1053174	0	C	T	bias_e_value=2103060	bias_p_value=1	consensus_score=123.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=28/18	major_frequency=9.787e-01	minor_base=C	minor_cov=1/0	new_cov=28/18	polymorphism_frequency=9.787e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=29/18
RA	5056	.	1	1054018	0	C	A	consensus_score=174.8	frequency=1	major_base=A	major_cov=34/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/31
RA	5057	.	1	1054700	0	T	G	consensus_score=154.7	frequency=1	major_base=G	major_cov=37/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/17
RA	5058	.	1	1054829	0	A	G	consensus_score=174.7	frequency=1	major_base=G	major_cov=37/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/28
RA	5059	.	1	1056247	0	A	G	consensus_score=145.4	frequency=1	major_base=G	major_cov=31/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/20
RA	5060	.	1	1056556	0	C	T	consensus_score=118.8	frequency=1	major_base=T	major_cov=21/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/23
RA	5061	.	1	1056896	0	T	C	consensus_score=159.4	frequency=1	major_base=C	major_cov=27/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/30
RA	5062	.	1	1057809	0	A	G	bias_e_value=1766450	bias_p_value=0.839945	consensus_score=145.8	fisher_strand_p_value=0.490566	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=27/25	major_frequency=9.811e-01	minor_base=T	minor_cov=0/1	new_cov=27/25	polymorphism_frequency=9.811e-01	polymorphism_score=-6.4	prediction=consensus	ref_cov=0/0	total_cov=27/26
RA	5063	.	1	1058195	0	T	C	consensus_score=222.1	frequency=1	major_base=C	major_cov=40/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/38
RA	5064	.	1	1058685	0	T	C	consensus_score=179.8	frequency=1	major_base=C	major_cov=33/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/30
RA	5065	.	1	1060433	0	T	C	consensus_score=162.1	frequency=1	major_base=C	major_cov=31/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/27
RA	5066	.	1	1063202	0	T	C	consensus_score=196.4	frequency=1	major_base=C	major_cov=30/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/38
RA	5067	.	1	1063970	0	A	C	bias_e_value=1.88518e-07	bias_p_value=8.96401e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=19.4	fisher_strand_p_value=1.16216e-08	frequency=5.741e-01	ks_quality_p_value=2.23013e-07	major_base=C	major_cov=0/31	major_frequency=5.741e-01	minor_base=A	minor_cov=16/7	new_cov=0/31	polymorphism_frequency=5.741e-01	polymorphism_score=55.6	prediction=polymorphism	ref_cov=16/7	total_cov=16/38
RA	5068	.	1	1063991	0	G	A	bias_e_value=2682.49	bias_p_value=0.00127552	consensus_reject=FREQUENCY_CUTOFF	consensus_score=48.5	fisher_strand_p_value=0.000128022	frequency=3.148e-01	ks_quality_p_value=1	major_base=G	major_cov=19/18	major_frequency=6.852e-01	minor_base=A	minor_cov=0/17	new_cov=0/17	polymorphism_frequency=3.148e-01	polymorphism_score=12.4	prediction=polymorphism	ref_cov=19/18	total_cov=19/35
RA	5069	.	1	1064445	0	T	C	consensus_score=212.1	frequency=1	major_base=C	major_cov=33/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/41
RA	5070	.	1	1065639	0	C	T	consensus_score=217.0	frequency=1	major_base=T	major_cov=37/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/42
RA	5071	.	1	1065940	0	C	T	bias_e_value=1754630	bias_p_value=0.834322	consensus_score=71.5	fisher_strand_p_value=0.482759	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=15/13	major_frequency=9.655e-01	minor_base=G	minor_cov=0/1	new_cov=15/13	polymorphism_frequency=9.655e-01	polymorphism_score=-5.9	prediction=consensus	ref_cov=0/0	total_cov=15/14
RA	5072	.	1	1067055	0	T	G	consensus_score=152.7	frequency=1	major_base=G	major_cov=27/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/30
RA	5073	.	1	1067531	0	C	A	consensus_score=161.3	frequency=1	major_base=A	major_cov=28/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/36
RA	5074	.	1	1067537	0	A	C	bias_e_value=1195990	bias_p_value=0.568693	consensus_score=145.4	fisher_strand_p_value=0.27881	frequency=1	ks_quality_p_value=0.826565	major_base=C	major_cov=25/29	major_frequency=8.571e-01	minor_base=A	minor_cov=2/7	new_cov=25/29	polymorphism_frequency=8.571e-01	polymorphism_score=16.1	prediction=consensus	ref_cov=2/7	total_cov=28/36
RA	5075	.	1	1067599	0	A	T	bias_e_value=821997	bias_p_value=0.390858	consensus_reject=FREQUENCY_CUTOFF	consensus_score=93.7	fisher_strand_p_value=0.260368	frequency=2.000e-01	ks_quality_p_value=0.491098	major_base=A	major_cov=18/18	major_frequency=8.000e-01	minor_base=T	minor_cov=2/7	new_cov=2/7	polymorphism_frequency=2.000e-01	polymorphism_score=20.9	prediction=polymorphism	ref_cov=18/18	total_cov=20/25
RA	5076	.	1	1067601	0	A	G	bias_e_value=1007780	bias_p_value=0.4792	consensus_reject=FREQUENCY_CUTOFF	consensus_score=76.5	fisher_strand_p_value=0.260368	frequency=2.000e-01	ks_quality_p_value=0.67032	major_base=A	major_cov=18/18	major_frequency=8.000e-01	minor_base=G	minor_cov=2/7	new_cov=2/7	polymorphism_frequency=2.000e-01	polymorphism_score=11.8	prediction=polymorphism	ref_cov=18/18	total_cov=20/25
RA	5077	.	1	1067628	0	A	G	bias_e_value=1249720	bias_p_value=0.594239	consensus_reject=FREQUENCY_CUTOFF	consensus_score=64.4	fisher_strand_p_value=0.262328	frequency=2.195e-01	ks_quality_p_value=0.946601	major_base=A	major_cov=15/17	major_frequency=7.805e-01	minor_base=G	minor_cov=2/7	new_cov=2/7	polymorphism_frequency=2.195e-01	polymorphism_score=12.4	prediction=polymorphism	ref_cov=15/17	total_cov=17/24
RA	5078	.	1	1067652	0	A	G	bias_e_value=1271080	bias_p_value=0.604397	consensus_reject=FREQUENCY_CUTOFF	consensus_score=62.8	fisher_strand_p_value=0.25569	frequency=2.250e-01	ks_quality_p_value=1	major_base=A	major_cov=15/16	major_frequency=7.750e-01	minor_base=G	minor_cov=2/7	new_cov=2/7	polymorphism_frequency=2.250e-01	polymorphism_score=11.8	prediction=polymorphism	ref_cov=15/16	total_cov=17/23
RA	5079	.	1	1067655	0	T	C	bias_e_value=1179620	bias_p_value=0.560905	consensus_reject=FREQUENCY_CUTOFF	consensus_score=60.5	fisher_strand_p_value=0.251224	frequency=2.308e-01	ks_quality_p_value=0.89637	major_base=T	major_cov=15/15	major_frequency=7.692e-01	minor_base=C	minor_cov=2/7	new_cov=2/7	polymorphism_frequency=2.308e-01	polymorphism_score=13.5	prediction=polymorphism	ref_cov=15/15	total_cov=17/22
RA	5080	.	1	1069963	0	T	A	bias_e_value=1009000	bias_p_value=0.47978	consensus_reject=FREQUENCY_CUTOFF	consensus_score=127.8	fisher_strand_p_value=0.182901	frequency=3.559e-01	ks_quality_p_value=0.956052	major_base=T	major_cov=37/39	major_frequency=6.441e-01	minor_base=A	minor_cov=26/16	new_cov=26/16	polymorphism_frequency=3.559e-01	polymorphism_score=126.5	prediction=polymorphism	ref_cov=37/39	total_cov=63/55
RA	5081	.	1	1069967	0	C	T	bias_e_value=977299	bias_p_value=0.464704	consensus_reject=FREQUENCY_CUTOFF	consensus_score=108.4	fisher_strand_p_value=0.173557	frequency=3.504e-01	ks_quality_p_value=0.958407	major_base=C	major_cov=37/39	major_frequency=6.496e-01	minor_base=T	minor_cov=26/15	new_cov=26/15	polymorphism_frequency=3.504e-01	polymorphism_score=77.1	prediction=polymorphism	ref_cov=37/39	total_cov=63/55
RA	5082	.	1	1069969	0	T	G	bias_e_value=904628	bias_p_value=0.430149	consensus_reject=FREQUENCY_CUTOFF	consensus_score=96.1	fisher_strand_p_value=0.172898	frequency=3.596e-01	ks_quality_p_value=0.854145	major_base=T	major_cov=36/37	major_frequency=6.404e-01	minor_base=G	minor_cov=26/15	new_cov=26/15	polymorphism_frequency=3.596e-01	polymorphism_score=107.1	prediction=polymorphism	ref_cov=36/37	total_cov=62/52
RA	5083	.	1	1069975	0	T	A	bias_e_value=138489	bias_p_value=0.065851	consensus_reject=FREQUENCY_CUTOFF	consensus_score=109.0	fisher_strand_p_value=0.246406	frequency=3.684e-01	ks_quality_p_value=0.0494141	major_base=T	major_cov=36/36	major_frequency=6.316e-01	minor_base=A	minor_cov=26/16	new_cov=26/16	polymorphism_frequency=3.684e-01	polymorphism_score=126.8	prediction=polymorphism	ref_cov=36/36	total_cov=62/52
RA	5084	.	1	1069981	0	T	C	bias_e_value=1465080	bias_p_value=0.696645	consensus_reject=FREQUENCY_CUTOFF	consensus_score=75.5	fisher_strand_p_value=0.33071	frequency=3.652e-01	ks_quality_p_value=1	major_base=T	major_cov=37/36	major_frequency=6.348e-01	minor_base=C	minor_cov=26/16	new_cov=26/16	polymorphism_frequency=3.652e-01	polymorphism_score=85.3	prediction=polymorphism	ref_cov=37/36	total_cov=63/52
RA	5085	.	1	1069987	0	T	C	bias_e_value=1452370	bias_p_value=0.690601	consensus_reject=FREQUENCY_CUTOFF	consensus_score=65.3	fisher_strand_p_value=0.33888	frequency=3.684e-01	ks_quality_p_value=0.959891	major_base=T	major_cov=36/36	major_frequency=6.316e-01	minor_base=C	minor_cov=25/17	new_cov=25/17	polymorphism_frequency=3.684e-01	polymorphism_score=89.2	prediction=polymorphism	ref_cov=36/36	total_cov=61/53
RA	5086	.	1	1069990	0	A	G	bias_e_value=1220670	bias_p_value=0.580428	consensus_reject=FREQUENCY_CUTOFF	consensus_score=70.5	fisher_strand_p_value=0.33888	frequency=3.684e-01	ks_quality_p_value=0.703923	major_base=A	major_cov=36/36	major_frequency=6.316e-01	minor_base=G	minor_cov=25/17	new_cov=25/17	polymorphism_frequency=3.684e-01	polymorphism_score=87.8	prediction=polymorphism	ref_cov=36/36	total_cov=61/53
RA	5087	.	1	1069996	0	G	T	bias_e_value=1761.79	bias_p_value=0.00083773	consensus_reject=FREQUENCY_CUTOFF	consensus_score=106.5	fisher_strand_p_value=0.567589	frequency=3.621e-01	ks_quality_p_value=0.000141517	major_base=G	major_cov=38/36	major_frequency=6.379e-01	minor_base=T	minor_cov=24/18	new_cov=24/18	polymorphism_frequency=3.621e-01	polymorphism_score=104.3	prediction=polymorphism	ref_cov=38/36	total_cov=62/54
RA	5088	.	1	1070002	0	T	C	bias_e_value=1594340	bias_p_value=0.758104	consensus_reject=FREQUENCY_CUTOFF	consensus_score=67.4	fisher_strand_p_value=0.454243	frequency=3.802e-01	ks_quality_p_value=0.860624	major_base=T	major_cov=38/37	major_frequency=6.198e-01	minor_base=C	minor_cov=27/19	new_cov=27/19	polymorphism_frequency=3.802e-01	polymorphism_score=96.1	prediction=polymorphism	ref_cov=38/37	total_cov=65/56
RA	5089	.	1	1070107	1	.	T	consensus_score=144.7	frequency=1	major_base=T	major_cov=25/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/29
RA	5090	.	1	1070112	0	C	G	consensus_score=147.4	frequency=1	major_base=G	major_cov=25/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/29
RA	5091	.	1	1070113	0	C	A	consensus_score=151.0	frequency=1	major_base=A	major_cov=25/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/29
RA	5092	.	1	1070116	0	T	A	consensus_score=141.4	frequency=1	major_base=A	major_cov=25/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/29
RA	5093	.	1	1070117	0	T	A	consensus_score=139.2	frequency=1	major_base=A	major_cov=25/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/29
RA	5094	.	1	1070119	1	.	T	bias_e_value=1214590	bias_p_value=0.577535	consensus_score=142.8	fisher_strand_p_value=0.462963	frequency=1	ks_quality_p_value=0.510912	major_base=T	major_cov=24/29	major_frequency=9.815e-01	minor_base=.	minor_cov=1/0	new_cov=24/29	polymorphism_frequency=9.815e-01	polymorphism_score=-3.2	prediction=consensus	ref_cov=1/0	total_cov=25/29
RA	5095	.	1	1070120	0	G	C	bias_e_value=1241370	bias_p_value=0.590268	consensus_score=127.2	fisher_strand_p_value=0.471698	frequency=1	ks_quality_p_value=0.520419	major_base=C	major_cov=24/28	major_frequency=9.811e-01	minor_base=T	minor_cov=1/0	new_cov=24/28	polymorphism_frequency=9.811e-01	polymorphism_score=-5.0	prediction=consensus	ref_cov=0/0	total_cov=25/29
RA	5096	.	1	1070121	0	G	A	bias_e_value=1586780	bias_p_value=0.754511	consensus_score=141.3	fisher_strand_p_value=0.462963	frequency=1	ks_quality_p_value=0.836193	major_base=A	major_cov=24/29	major_frequency=9.815e-01	minor_base=C	minor_cov=1/0	new_cov=24/29	polymorphism_frequency=9.815e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=0/0	total_cov=25/29
RA	5097	.	1	1070128	0	C	T	consensus_score=151.2	frequency=1	major_base=T	major_cov=26/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/32
RA	5098	.	1	1070155	0	T	C	consensus_score=152.1	frequency=1	major_base=C	major_cov=24/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/31
RA	5099	.	1	1070156	0	A	C	consensus_score=154.2	frequency=1	major_base=C	major_cov=24/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/31
RA	5100	.	1	1070187	0	G	T	consensus_score=129.0	frequency=1	major_base=T	major_cov=21/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/25
RA	5101	.	1	1070195	0	C	T	bias_e_value=2103060	bias_p_value=1	consensus_score=97.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=15/22	major_frequency=9.737e-01	minor_base=C	minor_cov=0/1	new_cov=15/22	polymorphism_frequency=9.737e-01	polymorphism_score=-5.9	prediction=consensus	ref_cov=0/1	total_cov=15/23
RA	5102	.	1	1070196	0	T	A	bias_e_value=1793690	bias_p_value=0.852898	consensus_score=93.4	fisher_strand_p_value=0.509246	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=15/21	major_frequency=9.474e-01	minor_base=C	minor_cov=0/2	new_cov=15/21	polymorphism_frequency=9.474e-01	polymorphism_score=-5.1	prediction=consensus	ref_cov=0/0	total_cov=15/23
RA	5103	.	1	1070197	0	G	C	consensus_score=101.8	frequency=1	major_base=C	major_cov=15/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/23
RA	5104	.	1	1070198	0	A	C	bias_e_value=1759520	bias_p_value=0.83665	consensus_score=92.2	fisher_strand_p_value=0.509246	frequency=1	ks_quality_p_value=0.954294	major_base=C	major_cov=15/21	major_frequency=9.474e-01	minor_base=A	minor_cov=0/2	new_cov=15/21	polymorphism_frequency=9.474e-01	polymorphism_score=-5.7	prediction=consensus	ref_cov=0/2	total_cov=15/23
RA	5105	.	1	1070200	0	G	A	consensus_score=99.3	frequency=1	major_base=A	major_cov=15/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/23
RA	5106	.	1	1070202	0	T	A	consensus_score=99.9	frequency=1	major_base=A	major_cov=15/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/23
RA	5107	.	1	1070250	0	G	C	consensus_score=93.9	frequency=1	major_base=C	major_cov=15/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/21
RA	5108	.	1	1070305	0	C	T	consensus_score=61.8	frequency=1	major_base=T	major_cov=10/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/15
RA	5109	.	1	1070308	0	C	T	consensus_score=62.8	frequency=1	major_base=T	major_cov=10/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/15
RA	5110	.	1	1070368	0	T	C	consensus_score=74.5	frequency=1	major_base=C	major_cov=13/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/14
RA	5111	.	1	1070372	0	A	C	consensus_score=73.3	frequency=1	major_base=C	major_cov=13/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/14
RA	5112	.	1	1070382	0	T	C	consensus_score=74.8	frequency=1	major_base=C	major_cov=13/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/14
RA	5113	.	1	1070416	0	C	T	consensus_score=54.9	frequency=1	major_base=T	major_cov=10/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/12
RA	5114	.	1	1070422	0	A	T	consensus_score=52.3	frequency=1	major_base=T	major_cov=9/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/11
RA	5115	.	1	1070423	0	T	C	consensus_score=50.8	frequency=1	major_base=C	major_cov=9/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/11
RA	5116	.	1	1070429	0	T	C	consensus_score=47.5	frequency=1	major_base=C	major_cov=9/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/11
RA	5117	.	1	1070433	0	C	T	consensus_score=49.1	frequency=1	major_base=T	major_cov=9/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/11
RA	5118	.	1	1070437	0	T	A	consensus_score=48.4	frequency=1	major_base=A	major_cov=9/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/11
RA	5119	.	1	1070440	0	T	G	consensus_score=51.3	frequency=1	major_base=G	major_cov=9/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/11
RA	5120	.	1	1070441	0	T	A	consensus_score=52.0	frequency=1	major_base=A	major_cov=9/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/11
RA	5121	.	1	1070442	0	T	A	consensus_score=51.3	frequency=1	major_base=A	major_cov=9/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/11
RA	5122	.	1	1070451	0	T	A	consensus_score=68.4	frequency=1	major_base=A	major_cov=12/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/14
RA	5123	.	1	1070462	0	T	A	consensus_score=55.7	frequency=1	major_base=A	major_cov=9/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/13
RA	5124	.	1	1070512	0	G	A	consensus_score=79.0	frequency=1	major_base=A	major_cov=14/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/17
RA	5125	.	1	1071846	0	C	T	consensus_score=182.7	frequency=1	major_base=T	major_cov=43/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/25
RA	5126	.	1	1072378	0	G	C	bias_e_value=1466550	bias_p_value=0.697343	consensus_score=80.7	fisher_strand_p_value=0.451613	frequency=1	ks_quality_p_value=0.733684	major_base=C	major_cov=17/13	major_frequency=9.677e-01	minor_base=A	minor_cov=0/1	new_cov=17/13	polymorphism_frequency=9.677e-01	polymorphism_score=-3.7	prediction=consensus	ref_cov=0/0	total_cov=17/14
RA	5127	.	1	1072896	0	T	C	consensus_score=142.6	frequency=1	major_base=C	major_cov=21/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/32
RA	5128	.	1	1074448	0	T	C	consensus_score=260.0	frequency=1	major_base=C	major_cov=54/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/40
RA	5129	.	1	1074809	0	A	G	consensus_score=150.1	frequency=1	major_base=G	major_cov=30/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/23
RA	5130	.	1	1075101	0	T	C	consensus_score=120.5	frequency=1	major_base=C	major_cov=25/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/19
RA	5131	.	1	1075817	0	C	T	consensus_score=193.5	frequency=1	major_base=T	major_cov=36/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/36
RA	5132	.	1	1075936	0	T	A	bias_e_value=0.0426953	bias_p_value=2.03016e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=121.9	fisher_strand_p_value=9.31511e-10	frequency=3.333e-01	ks_quality_p_value=1	major_base=T	major_cov=12/34	major_frequency=6.667e-01	minor_base=A	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=3.333e-01	polymorphism_score=16.8	prediction=polymorphism	ref_cov=12/34	total_cov=35/34
RA	5133	.	1	1076309	0	T	G	bias_e_value=238358	bias_p_value=0.113339	consensus_score=140.5	fisher_strand_p_value=0.0245749	frequency=1	ks_quality_p_value=0.974709	major_base=G	major_cov=34/28	major_frequency=9.118e-01	minor_base=T	minor_cov=0/6	new_cov=34/28	polymorphism_frequency=9.118e-01	polymorphism_score=-3.8	prediction=consensus	ref_cov=0/6	total_cov=34/34
RA	5134	.	1	1076984	0	C	T	consensus_score=179.9	frequency=1	major_base=T	major_cov=23/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/43
RA	5135	.	1	1077473	0	C	T	bias_e_value=2103060	bias_p_value=1	consensus_score=144.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=19/36	major_frequency=9.821e-01	minor_base=C	minor_cov=0/1	new_cov=19/36	polymorphism_frequency=9.821e-01	polymorphism_score=-5.0	prediction=consensus	ref_cov=0/1	total_cov=19/37
RA	5136	.	1	1078184	0	C	A	bias_e_value=1196960	bias_p_value=0.569155	consensus_score=107.3	fisher_strand_p_value=0.230769	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=30/8	major_frequency=9.744e-01	minor_base=C	minor_cov=0/1	new_cov=30/8	polymorphism_frequency=9.744e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=30/9
RA	5137	.	1	1078528	0	G	A	consensus_score=177.1	frequency=1	major_base=A	major_cov=34/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/34
RA	5138	.	1	1079101	0	G	T	consensus_score=243.8	frequency=1	major_base=T	major_cov=39/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/50
RA	5139	.	1	1080044	0	T	C	consensus_score=173.3	frequency=1	major_base=C	major_cov=28/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/36
RA	5140	.	1	1080139	0	A	G	consensus_score=178.1	frequency=1	major_base=G	major_cov=26/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/36
RA	5141	.	1	1081329	0	A	G	consensus_score=180.6	frequency=1	major_base=G	major_cov=25/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/40
RA	5142	.	1	1082865	0	G	T	consensus_score=203.0	frequency=1	major_base=T	major_cov=35/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/40
RA	5143	.	1	1083898	0	A	G	consensus_score=251.4	frequency=1	major_base=G	major_cov=49/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/42
RA	5144	.	1	1085003	0	C	T	bias_e_value=1749780	bias_p_value=0.832019	consensus_score=204.4	fisher_strand_p_value=0.481013	frequency=1	ks_quality_p_value=0.997083	major_base=T	major_cov=37/41	major_frequency=9.873e-01	minor_base=C	minor_cov=1/0	new_cov=37/41	polymorphism_frequency=9.873e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=38/41
RA	5145	.	1	1085094	0	G	A	bias_e_value=1768840	bias_p_value=0.841081	consensus_score=186.6	fisher_strand_p_value=0.492958	frequency=1	ks_quality_p_value=0.998392	major_base=A	major_cov=34/36	major_frequency=9.859e-01	minor_base=G	minor_cov=1/0	new_cov=34/36	polymorphism_frequency=9.859e-01	polymorphism_score=-5.7	prediction=consensus	ref_cov=1/0	total_cov=35/36
RA	5146	.	1	1085324	0	T	C	consensus_score=201.2	frequency=1	major_base=C	major_cov=23/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/51
RA	5147	.	1	1087916	0	G	A	consensus_score=240.6	frequency=1	major_base=A	major_cov=40/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/45
RA	5148	.	1	1087981	0	G	T	consensus_score=227.5	frequency=1	major_base=T	major_cov=38/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/42
RA	5149	.	1	1088942	0	G	A	consensus_score=231.3	frequency=1	major_base=A	major_cov=41/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/43
RA	5150	.	1	1089005	0	C	G	consensus_score=233.2	frequency=1	major_base=G	major_cov=38/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/47
RA	5151	.	1	1089079	0	C	T	consensus_score=187.6	frequency=1	major_base=T	major_cov=29/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/40
RA	5152	.	1	1089443	0	T	C	consensus_score=224.3	frequency=1	major_base=C	major_cov=31/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/47
RA	5153	.	1	1090255	0	T	G	consensus_score=268.2	frequency=1	major_base=G	major_cov=51/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/47
RA	5154	.	1	1090525	0	A	G	consensus_score=219.9	frequency=1	major_base=G	major_cov=37/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/43
RA	5155	.	1	1090757	0	T	C	consensus_score=193.1	frequency=1	major_base=C	major_cov=14/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/54
RA	5156	.	1	1090931	0	C	T	consensus_score=144.4	frequency=1	major_base=T	major_cov=8/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/47
RA	5157	.	1	1091035	0	A	G	consensus_score=183.4	frequency=1	major_base=G	major_cov=27/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/38
RA	5158	.	1	1091078	0	C	T	bias_e_value=2103060	bias_p_value=1	consensus_score=196.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=33/42	major_frequency=9.868e-01	minor_base=C	minor_cov=0/1	new_cov=33/42	polymorphism_frequency=9.868e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=33/43
RA	5159	.	1	1092237	0	C	T	consensus_score=283.9	frequency=1	major_base=T	major_cov=46/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/57
RA	5160	.	1	1092296	0	A	G	consensus_score=249.0	frequency=1	major_base=G	major_cov=51/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/37
RA	5161	.	1	1093440	0	G	C	bias_e_value=1772830	bias_p_value=0.842975	consensus_score=279.9	fisher_strand_p_value=0.494949	frequency=1	ks_quality_p_value=0.999794	major_base=C	major_cov=50/48	major_frequency=9.899e-01	minor_base=T	minor_cov=0/1	new_cov=50/48	polymorphism_frequency=9.899e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/49
RA	5162	.	1	1094277	0	C	T	consensus_score=244.3	frequency=1	major_base=T	major_cov=58/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/32
RA	5163	.	1	1094439	0	G	T	consensus_score=244.9	frequency=1	major_base=T	major_cov=45/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/45
RA	5164	.	1	1096349	0	A	G	consensus_score=231.5	frequency=1	major_base=G	major_cov=37/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/43
RA	5165	.	1	1096435	0	C	.	consensus_score=323.5	frequency=1	major_base=.	major_cov=34/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/43
RA	5166	.	1	1097251	0	G	A	consensus_score=228.4	frequency=1	major_base=A	major_cov=48/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/35
RA	5167	.	1	1098349	0	C	T	bias_e_value=91628.9	bias_p_value=0.0435694	consensus_score=169.9	fisher_strand_p_value=0.00737207	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=24/45	major_frequency=9.324e-01	minor_base=C	minor_cov=5/0	new_cov=24/45	polymorphism_frequency=9.324e-01	polymorphism_score=NA	prediction=consensus	ref_cov=5/0	total_cov=29/45
RA	5168	.	1	1100818	0	T	G	consensus_score=281.6	frequency=1	major_base=G	major_cov=48/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/51
RA	5169	.	1	1103318	0	A	C	consensus_score=210.8	frequency=1	major_base=C	major_cov=44/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/31
RA	5170	.	1	1103893	0	T	C	consensus_score=212.5	frequency=1	major_base=C	major_cov=30/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/44
RA	5171	.	1	1105580	0	C	T	consensus_score=267.5	frequency=1	major_base=T	major_cov=43/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/55
RA	5172	.	1	1106040	0	G	A	consensus_score=248.7	frequency=1	major_base=A	major_cov=52/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/40
RA	5173	.	1	1106106	0	A	C	consensus_score=250.3	frequency=1	major_base=C	major_cov=47/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/41
RA	5174	.	1	1106550	0	T	C	consensus_score=229.4	frequency=1	major_base=C	major_cov=45/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/36
RA	5175	.	1	1107809	0	C	T	consensus_score=184.8	frequency=1	major_base=T	major_cov=29/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/39
RA	5176	.	1	1108080	0	C	A	consensus_score=132.3	frequency=1	major_base=A	major_cov=26/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/24
RA	5177	.	1	1108168	0	G	A	bias_e_value=1.26655	bias_p_value=6.02241e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=89.5	fisher_strand_p_value=3.39029e-08	frequency=2.836e-01	ks_quality_p_value=0.974665	major_base=G	major_cov=14/34	major_frequency=7.164e-01	minor_base=A	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.836e-01	polymorphism_score=13.3	prediction=polymorphism	ref_cov=14/34	total_cov=33/34
RA	5178	.	1	1108211	0	T	A	bias_e_value=96.0309	bias_p_value=4.56625e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=149.7	fisher_strand_p_value=3.35639e-06	frequency=2.338e-01	ks_quality_p_value=1	major_base=T	major_cov=24/35	major_frequency=7.662e-01	minor_base=A	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.338e-01	polymorphism_score=10.2	prediction=polymorphism	ref_cov=24/35	total_cov=42/35
RA	5179	.	1	1108214	0	C	A	bias_e_value=2102530	bias_p_value=0.999752	consensus_score=195.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.977794	major_base=A	major_cov=41/34	major_frequency=9.868e-01	minor_base=C	minor_cov=1/0	new_cov=41/34	polymorphism_frequency=9.868e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=42/34
RA	5180	.	1	1109264	0	C	T	consensus_score=224.4	frequency=1	major_base=T	major_cov=36/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/46
RA	5181	.	1	1109398	0	G	T	bias_e_value=0.000295925	bias_p_value=1.40712e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=156.2	fisher_strand_p_value=5.64324e-12	frequency=2.759e-01	ks_quality_p_value=0.924208	major_base=G	major_cov=14/49	major_frequency=7.241e-01	minor_base=T	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.759e-01	polymorphism_score=16.7	prediction=polymorphism	ref_cov=14/49	total_cov=40/49
RA	5182	.	1	1109418	0	G	C	bias_e_value=2.44603e-05	bias_p_value=1.16308e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=153.9	fisher_strand_p_value=3.93413e-13	frequency=2.921e-01	ks_quality_p_value=1	major_base=G	major_cov=13/50	major_frequency=7.079e-01	minor_base=C	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=2.921e-01	polymorphism_score=25.5	prediction=polymorphism	ref_cov=13/50	total_cov=39/50
RA	5183	.	1	1109464	0	G	C	bias_e_value=0.589748	bias_p_value=2.80424e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=182.5	fisher_strand_p_value=1.47335e-08	frequency=2.159e-01	ks_quality_p_value=1	major_base=G	major_cov=21/48	major_frequency=7.841e-01	minor_base=C	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.159e-01	polymorphism_score=11.9	prediction=polymorphism	ref_cov=21/48	total_cov=40/48
RA	5184	.	1	1111198	0	G	A	consensus_score=243.9	frequency=1	major_base=A	major_cov=39/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/47
RA	5185	.	1	1111262	0	T	C	consensus_score=232.9	frequency=1	major_base=C	major_cov=41/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/44
RA	5186	.	1	1111515	0	G	T	consensus_score=290.3	frequency=1	major_base=T	major_cov=49/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/56
RA	5187	.	1	1111874	0	G	A	consensus_score=278.8	frequency=1	major_base=A	major_cov=52/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/45
RA	5188	.	1	1111943	0	G	A	consensus_score=264.3	frequency=1	major_base=A	major_cov=54/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/44
RA	5189	.	1	1112502	0	T	C	consensus_score=204.6	frequency=1	major_base=C	major_cov=37/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/34
RA	5190	.	1	1113056	0	G	A	consensus_score=251.6	frequency=1	major_base=A	major_cov=47/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/40
RA	5191	.	1	1113417	0	C	A	consensus_score=246.1	frequency=1	major_base=A	major_cov=39/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/48
RA	5192	.	1	1114077	0	C	A	bias_e_value=738941	bias_p_value=0.351365	consensus_score=242.9	fisher_strand_p_value=0.109351	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=48/42	major_frequency=9.677e-01	minor_base=C	minor_cov=0/3	new_cov=48/42	polymorphism_frequency=9.677e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/3	total_cov=48/45
RA	5193	.	1	1114205	0	A	G	consensus_score=279.4	frequency=1	major_base=G	major_cov=56/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/50
RA	5194	.	1	1114468	0	G	A	consensus_score=170.6	frequency=1	major_base=A	major_cov=23/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/38
RA	5195	.	1	1115352	0	C	T	bias_e_value=1759130	bias_p_value=0.836465	consensus_score=298.7	fisher_strand_p_value=0.485714	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=54/50	major_frequency=9.905e-01	minor_base=A	minor_cov=0/1	new_cov=54/50	polymorphism_frequency=9.905e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/51
RA	5196	.	1	1115713	0	A	G	consensus_score=301.7	frequency=1	major_base=G	major_cov=58/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/51
RA	5197	.	1	1117319	1	.	C	bias_e_value=2103060	bias_p_value=1	consensus_score=207.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=50/24	major_frequency=9.867e-01	minor_base=T	minor_cov=1/0	new_cov=50/24	polymorphism_frequency=9.867e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=52/24
RA	5198	.	1	1117806	0	C	T	consensus_score=112.2	frequency=1	major_base=T	major_cov=18/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/25
RA	5199	.	1	1118570	0	C	.	consensus_score=219.9	frequency=1	major_base=.	major_cov=25/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/27
RA	5200	.	1	1118685	0	A	C	consensus_score=200.0	frequency=1	major_base=C	major_cov=42/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/31
RA	5201	.	1	1119016	0	C	T	consensus_score=222.0	frequency=1	major_base=T	major_cov=35/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/46
RA	5202	.	1	1119655	0	A	C	consensus_score=413.1	frequency=1	major_base=C	major_cov=60/88	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/88	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/88
RA	5203	.	1	1120033	0	T	C	bias_e_value=866872	bias_p_value=0.412196	consensus_score=326.6	fisher_strand_p_value=0.138523	frequency=1	ks_quality_p_value=0.999463	major_base=C	major_cov=52/68	major_frequency=9.677e-01	minor_base=A	minor_cov=0/4	new_cov=52/68	polymorphism_frequency=9.677e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=53/72
RA	5204	.	1	1120416	0	C	T	consensus_score=250.1	frequency=1	major_base=T	major_cov=42/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/50
RA	5205	.	1	1120659	0	C	A	consensus_score=330.2	frequency=1	major_base=A	major_cov=47/69	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/69	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/69
RA	5206	.	1	1121279	0	T	C	consensus_score=241.7	frequency=1	major_base=C	major_cov=42/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/45
RA	5207	.	1	1122180	0	G	C	consensus_score=299.0	frequency=1	major_base=C	major_cov=51/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/54
RA	5208	.	1	1123377	0	A	G	consensus_score=354.8	frequency=1	major_base=G	major_cov=56/71	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/71	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/71
RA	5209	.	1	1123995	0	G	A	consensus_score=315.3	frequency=1	major_base=A	major_cov=54/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/61
RA	5210	.	1	1124505	0	C	A	consensus_score=36.3	frequency=1	major_base=A	major_cov=10/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/5
RA	5211	.	1	1125290	0	T	.	consensus_score=511.0	frequency=1	major_base=.	major_cov=58/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/61
RA	5212	.	1	1125322	0	T	C	bias_e_value=1513360	bias_p_value=0.7196	consensus_score=312.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.352066	major_base=C	major_cov=52/61	major_frequency=9.912e-01	minor_base=T	minor_cov=0/1	new_cov=52/61	polymorphism_frequency=9.912e-01	polymorphism_score=-5.7	prediction=consensus	ref_cov=0/1	total_cov=52/62
RA	5213	.	1	1125916	0	A	C	bias_e_value=6.16452e-05	bias_p_value=2.93122e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=137.0	fisher_strand_p_value=1.02466e-12	frequency=3.333e-01	ks_quality_p_value=1	major_base=A	major_cov=45/15	major_frequency=6.667e-01	minor_base=C	minor_cov=0/30	new_cov=0/30	polymorphism_frequency=3.333e-01	polymorphism_score=15.0	prediction=polymorphism	ref_cov=45/15	total_cov=45/46
RA	5214	.	1	1127584	0	C	T	consensus_score=200.2	frequency=1	major_base=T	major_cov=38/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/36
RA	5215	.	1	1127919	0	A	G	consensus_score=180.1	frequency=1	major_base=G	major_cov=33/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/32
RA	5216	.	1	1128302	0	G	T	consensus_score=222.3	frequency=1	major_base=T	major_cov=38/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/43
RA	5217	.	1	1131334	0	G	T	consensus_score=261.7	frequency=1	major_base=T	major_cov=44/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/47
RA	5218	.	1	1131973	0	T	C	consensus_score=239.4	frequency=1	major_base=C	major_cov=34/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/48
RA	5219	.	1	1132833	0	A	G	consensus_score=150.3	frequency=1	major_base=G	major_cov=23/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/31
RA	5220	.	1	1133849	0	A	T	consensus_score=207.5	frequency=1	major_base=T	major_cov=46/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/31
RA	5221	.	1	1134092	0	G	A	consensus_score=52.8	frequency=1	major_base=A	major_cov=11/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/10
RA	5222	.	1	1134098	0	C	T	consensus_score=64.7	frequency=1	major_base=T	major_cov=13/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/12
RA	5223	.	1	1134110	0	C	T	consensus_score=92.1	frequency=1	major_base=T	major_cov=21/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/14
RA	5224	.	1	1134112	0	G	T	consensus_score=95.8	frequency=1	major_base=T	major_cov=21/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/14
RA	5225	.	1	1134113	0	T	A	consensus_score=94.0	frequency=1	major_base=A	major_cov=21/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/14
RA	5226	.	1	1134122	0	A	G	consensus_score=125.8	frequency=1	major_base=G	major_cov=29/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/18
RA	5227	.	1	1134128	0	G	A	consensus_score=126.5	frequency=1	major_base=A	major_cov=30/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/18
RA	5228	.	1	1134155	0	T	G	consensus_score=191.2	frequency=1	major_base=G	major_cov=40/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/31
RA	5229	.	1	1134163	0	G	A	consensus_score=199.6	frequency=1	major_base=A	major_cov=41/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/33
RA	5230	.	1	1134170	0	T	C	consensus_score=217.6	frequency=1	major_base=C	major_cov=43/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/35
RA	5231	.	1	1134176	0	T	C	bias_e_value=1699660	bias_p_value=0.808183	consensus_score=210.6	fisher_strand_p_value=0.448718	frequency=1	ks_quality_p_value=0.999667	major_base=C	major_cov=43/34	major_frequency=9.872e-01	minor_base=T	minor_cov=0/1	new_cov=43/34	polymorphism_frequency=9.872e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=43/35
RA	5232	.	1	1134185	0	C	T	bias_e_value=1709650	bias_p_value=0.812935	consensus_score=205.0	fisher_strand_p_value=0.454545	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=42/34	major_frequency=9.870e-01	minor_base=G	minor_cov=0/1	new_cov=42/34	polymorphism_frequency=9.870e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/35
RA	5233	.	1	1134188	0	C	T	consensus_score=220.3	frequency=1	major_base=T	major_cov=43/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/35
RA	5234	.	1	1134221	0	C	T	consensus_score=253.0	frequency=1	major_base=T	major_cov=49/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/45
RA	5235	.	1	1134227	0	T	A	bias_e_value=1634400	bias_p_value=0.777155	consensus_score=244.3	fisher_strand_p_value=0.494624	frequency=1	ks_quality_p_value=0.832549	major_base=A	major_cov=47/45	major_frequency=9.892e-01	minor_base=G	minor_cov=0/1	new_cov=47/45	polymorphism_frequency=9.892e-01	polymorphism_score=-5.3	prediction=consensus	ref_cov=0/0	total_cov=47/46
RA	5236	.	1	1134230	0	G	T	consensus_score=265.3	frequency=1	major_base=T	major_cov=47/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/46
RA	5237	.	1	1134250	0	C	T	consensus_score=268.0	frequency=1	major_base=T	major_cov=48/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/51
RA	5238	.	1	1134257	0	A	G	consensus_score=286.9	frequency=1	major_base=G	major_cov=50/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/50
RA	5239	.	1	1134263	0	G	A	consensus_score=299.4	frequency=1	major_base=A	major_cov=53/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/51
RA	5240	.	1	1134266	0	C	T	consensus_score=283.3	frequency=1	major_base=T	major_cov=53/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/51
RA	5241	.	1	1134275	0	T	A	consensus_score=312.1	frequency=1	major_base=A	major_cov=61/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/54
RA	5242	.	1	1134287	0	C	T	consensus_score=337.8	frequency=1	major_base=T	major_cov=65/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/53
RA	5243	.	1	1134299	0	A	G	consensus_score=353.0	frequency=1	major_base=G	major_cov=67/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=67/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/54
RA	5244	.	1	1134308	0	G	T	bias_e_value=2103060	bias_p_value=1	consensus_score=326.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=66/54	major_frequency=9.917e-01	minor_base=G	minor_cov=1/0	new_cov=66/54	polymorphism_frequency=9.917e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=67/54
RA	5245	.	1	1134500	0	G	T	consensus_score=189.6	frequency=1	major_base=T	major_cov=41/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/29
RA	5246	.	1	1134651	0	C	T	consensus_score=212.7	frequency=1	major_base=T	major_cov=41/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/34
RA	5247	.	1	1134652	0	G	T	consensus_score=211.6	frequency=1	major_base=T	major_cov=41/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/34
RA	5248	.	1	1134656	0	C	T	consensus_score=206.0	frequency=1	major_base=T	major_cov=41/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/34
RA	5249	.	1	1134659	0	G	A	consensus_score=204.0	frequency=1	major_base=A	major_cov=41/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/34
RA	5250	.	1	1134686	0	G	A	consensus_score=218.5	frequency=1	major_base=A	major_cov=39/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/42
RA	5251	.	1	1134689	0	A	C	consensus_score=224.9	frequency=1	major_base=C	major_cov=39/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/42
RA	5252	.	1	1134692	0	G	A	consensus_score=228.5	frequency=1	major_base=A	major_cov=39/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/42
RA	5253	.	1	1134694	0	G	A	consensus_score=229.0	frequency=1	major_base=A	major_cov=39/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/42
RA	5254	.	1	1135094	0	T	C	consensus_score=232.7	frequency=1	major_base=C	major_cov=43/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/42
RA	5255	.	1	1135097	0	T	C	consensus_score=232.8	frequency=1	major_base=C	major_cov=43/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/42
RA	5256	.	1	1135123	0	A	G	consensus_score=240.8	frequency=1	major_base=G	major_cov=49/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/36
RA	5257	.	1	1135124	0	T	C	consensus_score=236.0	frequency=1	major_base=C	major_cov=49/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/36
RA	5258	.	1	1135133	0	T	C	consensus_score=238.1	frequency=1	major_base=C	major_cov=49/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/36
RA	5259	.	1	1135142	0	G	A	consensus_score=250.8	frequency=1	major_base=A	major_cov=50/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/37
RA	5260	.	1	1135169	0	G	T	consensus_score=221.6	frequency=1	major_base=T	major_cov=49/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/30
RA	5261	.	1	1135172	0	T	C	consensus_score=221.9	frequency=1	major_base=C	major_cov=47/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/30
RA	5262	.	1	1135181	0	C	T	consensus_score=211.7	frequency=1	major_base=T	major_cov=46/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/32
RA	5263	.	1	1135193	0	A	T	consensus_score=188.8	frequency=1	major_base=T	major_cov=40/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/31
RA	5264	.	1	1135196	0	G	A	consensus_score=193.8	frequency=1	major_base=A	major_cov=40/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/31
RA	5265	.	1	1135325	0	G	A	consensus_score=144.1	frequency=1	major_base=A	major_cov=29/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/25
RA	5266	.	1	1135343	0	G	A	consensus_score=93.0	frequency=1	major_base=A	major_cov=19/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/17
RA	5267	.	1	1135346	0	T	G	consensus_score=94.9	frequency=1	major_base=G	major_cov=19/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/17
RA	5268	.	1	1135348	0	A	G	consensus_score=94.5	frequency=1	major_base=G	major_cov=19/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/17
RA	5269	.	1	1135349	0	A	C	consensus_score=98.6	frequency=1	major_base=C	major_cov=19/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/17
RA	5270	.	1	1135355	0	T	A	consensus_score=94.0	frequency=1	major_base=A	major_cov=19/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/17
RA	5271	.	1	1135358	0	G	A	consensus_score=91.5	frequency=1	major_base=A	major_cov=19/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/17
RA	5272	.	1	1135364	0	C	T	consensus_score=92.7	frequency=1	major_base=T	major_cov=19/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/17
RA	5273	.	1	1135373	0	G	A	consensus_score=97.7	frequency=1	major_base=A	major_cov=19/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/17
RA	5274	.	1	1135379	0	G	C	consensus_score=91.3	frequency=1	major_base=C	major_cov=18/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/17
RA	5275	.	1	1135387	0	C	T	consensus_score=86.0	frequency=1	major_base=T	major_cov=16/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/17
RA	5276	.	1	1135396	0	T	A	consensus_score=84.4	frequency=1	major_base=A	major_cov=16/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/17
RA	5277	.	1	1135397	0	C	T	consensus_score=84.3	frequency=1	major_base=T	major_cov=16/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/17
RA	5278	.	1	1135400	0	G	A	consensus_score=84.9	frequency=1	major_base=A	major_cov=16/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/17
RA	5279	.	1	1135408	0	C	T	consensus_score=66.2	frequency=1	major_base=T	major_cov=12/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/15
RA	5280	.	1	1135409	0	C	T	consensus_score=67.1	frequency=1	major_base=T	major_cov=12/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/15
RA	5281	.	1	1135410	0	C	T	consensus_score=68.8	frequency=1	major_base=T	major_cov=12/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/15
RA	5282	.	1	1135412	0	C	T	consensus_score=69.2	frequency=1	major_base=T	major_cov=12/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/15
RA	5283	.	1	1135413	0	G	A	consensus_score=68.8	frequency=1	major_base=A	major_cov=12/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/15
RA	5284	.	1	1135418	0	C	T	consensus_score=67.7	frequency=1	major_base=T	major_cov=12/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/15
RA	5285	.	1	1135421	0	G	T	consensus_score=67.7	frequency=1	major_base=T	major_cov=12/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/15
RA	5286	.	1	1135422	0	G	T	consensus_score=67.0	frequency=1	major_base=T	major_cov=12/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/15
RA	5287	.	1	1135423	0	C	T	consensus_score=68.7	frequency=1	major_base=T	major_cov=12/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/15
RA	5288	.	1	1135424	0	A	T	consensus_score=67.2	frequency=1	major_base=T	major_cov=12/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/15
RA	5289	.	1	1135427	0	C	G	consensus_score=72.9	frequency=1	major_base=G	major_cov=12/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/15
RA	5290	.	1	1135436	0	G	A	consensus_score=99.6	frequency=1	major_base=A	major_cov=15/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/22
RA	5291	.	1	1135451	0	A	G	consensus_score=105.4	frequency=1	major_base=G	major_cov=16/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/22
RA	5292	.	1	1135452	0	T	G	consensus_score=101.9	frequency=1	major_base=G	major_cov=16/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/22
RA	5293	.	1	1135453	0	T	A	consensus_score=102.8	frequency=1	major_base=A	major_cov=16/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/22
RA	5294	.	1	1135454	0	C	T	consensus_score=106.8	frequency=1	major_base=T	major_cov=16/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/22
RA	5295	.	1	1135463	0	C	T	consensus_score=128.7	frequency=1	major_base=T	major_cov=22/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/26
RA	5296	.	1	1135472	0	G	T	consensus_score=143.7	frequency=1	major_base=T	major_cov=26/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/27
RA	5297	.	1	1135484	0	A	G	consensus_score=134.0	frequency=1	major_base=G	major_cov=25/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/23
RA	5298	.	1	1135487	0	C	T	consensus_score=129.1	frequency=1	major_base=T	major_cov=25/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/23
RA	5299	.	1	1135492	0	G	A	consensus_score=87.3	frequency=1	major_base=A	major_cov=19/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/15
RA	5300	.	1	1135495	0	A	T	bias_e_value=1687060	bias_p_value=0.802196	consensus_score=84.7	fisher_strand_p_value=0.441176	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=19/14	major_frequency=9.706e-01	minor_base=C	minor_cov=0/1	new_cov=19/14	polymorphism_frequency=9.706e-01	polymorphism_score=-5.7	prediction=consensus	ref_cov=0/0	total_cov=19/15
RA	5301	.	1	1135496	0	G	C	consensus_score=93.5	frequency=1	major_base=C	major_cov=19/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/15
RA	5302	.	1	1135499	0	G	T	consensus_score=88.7	frequency=1	major_base=T	major_cov=19/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/15
RA	5303	.	1	1135511	0	C	.	consensus_score=115.3	frequency=1	major_base=.	major_cov=16/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/12
RA	5304	.	1	1135514	0	T	G	consensus_score=77.4	frequency=1	major_base=G	major_cov=16/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/12
RA	5305	.	1	1135515	0	A	G	consensus_score=76.5	frequency=1	major_base=G	major_cov=16/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/12
RA	5306	.	1	1135517	1	.	A	consensus_score=75.6	frequency=1	major_base=A	major_cov=16/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/12
RA	5307	.	1	1135520	0	T	C	consensus_score=74.0	frequency=1	major_base=C	major_cov=16/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/12
RA	5308	.	1	1135526	0	G	T	consensus_score=117.8	frequency=1	major_base=T	major_cov=26/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/18
RA	5309	.	1	1135541	0	T	A	consensus_score=127.2	frequency=1	major_base=A	major_cov=26/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/22
RA	5310	.	1	1135545	0	A	C	consensus_score=134.6	frequency=1	major_base=C	major_cov=26/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/22
RA	5311	.	1	1135546	0	G	A	consensus_score=133.8	frequency=1	major_base=A	major_cov=26/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/22
RA	5312	.	1	1135547	0	G	A	consensus_score=135.7	frequency=1	major_base=A	major_cov=26/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/22
RA	5313	.	1	1135562	0	A	T	consensus_score=179.3	frequency=1	major_base=T	major_cov=34/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/31
RA	5314	.	1	1135577	0	A	G	consensus_score=215.9	frequency=1	major_base=G	major_cov=40/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/37
RA	5315	.	1	1135583	0	G	A	consensus_score=219.5	frequency=1	major_base=A	major_cov=40/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/37
RA	5316	.	1	1135586	0	C	T	consensus_score=208.3	frequency=1	major_base=T	major_cov=40/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/37
RA	5317	.	1	1135592	0	A	G	consensus_score=211.6	frequency=1	major_base=G	major_cov=40/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/37
RA	5318	.	1	1135595	0	C	T	bias_e_value=1751190	bias_p_value=0.832686	consensus_score=201.1	fisher_strand_p_value=0.480519	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=40/36	major_frequency=9.870e-01	minor_base=C	minor_cov=0/1	new_cov=40/36	polymorphism_frequency=9.870e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=40/37
RA	5319	.	1	1135597	0	G	A	consensus_score=204.5	frequency=1	major_base=A	major_cov=40/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/37
RA	5320	.	1	1135667	0	A	G	consensus_score=269.9	frequency=1	major_base=G	major_cov=47/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/46
RA	5321	.	1	1136095	0	A	G	consensus_score=197.7	frequency=1	major_base=G	major_cov=23/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/46
RA	5322	.	1	1136125	0	A	G	consensus_score=182.5	frequency=1	major_base=G	major_cov=21/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/45
RA	5323	.	1	1136134	0	G	A	consensus_score=171.1	frequency=1	major_base=A	major_cov=18/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/45
RA	5324	.	1	1136140	0	G	C	consensus_score=154.2	frequency=1	major_base=C	major_cov=18/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/40
RA	5325	.	1	1136143	0	T	C	consensus_score=166.2	frequency=1	major_base=C	major_cov=18/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/40
RA	5326	.	1	1136173	0	C	T	consensus_score=190.7	frequency=1	major_base=T	major_cov=28/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/41
RA	5327	.	1	1136230	0	C	T	consensus_score=187.2	frequency=1	major_base=T	major_cov=31/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/38
RA	5328	.	1	1136239	0	G	A	consensus_score=193.0	frequency=1	major_base=A	major_cov=30/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/38
RA	5329	.	1	1136242	0	A	G	consensus_score=193.8	frequency=1	major_base=G	major_cov=30/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/38
RA	5330	.	1	1136257	0	A	G	consensus_score=202.8	frequency=1	major_base=G	major_cov=33/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/37
RA	5331	.	1	1136272	0	G	A	consensus_score=205.0	frequency=1	major_base=A	major_cov=36/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/40
RA	5332	.	1	1136301	0	G	A	consensus_score=213.2	frequency=1	major_base=A	major_cov=41/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/38
RA	5333	.	1	1136465	0	T	G	consensus_score=167.7	frequency=1	major_base=G	major_cov=30/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/34
RA	5334	.	1	1136488	0	T	C	bias_e_value=1158860	bias_p_value=0.551035	consensus_score=159.6	fisher_strand_p_value=0.218634	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=31/37	major_frequency=9.714e-01	minor_base=A	minor_cov=2/0	new_cov=31/37	polymorphism_frequency=9.714e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/37
RA	5335	.	1	1136494	0	G	A	bias_e_value=203386	bias_p_value=0.0967096	consensus_score=155.2	fisher_strand_p_value=0.0196097	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=28/37	major_frequency=9.286e-01	minor_base=T	minor_cov=5/0	new_cov=28/37	polymorphism_frequency=9.286e-01	polymorphism_score=-3.7	prediction=consensus	ref_cov=0/0	total_cov=33/37
RA	5336	.	1	1136515	0	G	A	bias_e_value=768564	bias_p_value=0.365451	consensus_score=199.8	fisher_strand_p_value=0.115799	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=37/41	major_frequency=9.512e-01	minor_base=C	minor_cov=4/0	new_cov=37/41	polymorphism_frequency=9.512e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/41
RA	5337	.	1	1136535	0	G	T	consensus_score=220.5	frequency=1	major_base=T	major_cov=41/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/45
RA	5338	.	1	1136593	0	G	A	consensus_score=226.8	frequency=1	major_base=A	major_cov=45/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/39
RA	5339	.	1	1136601	0	T	G	bias_e_value=2103060	bias_p_value=1	consensus_score=222.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=49/34	major_frequency=9.881e-01	minor_base=T	minor_cov=1/0	new_cov=49/34	polymorphism_frequency=9.881e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=50/34
RA	5340	.	1	1136623	0	G	A	bias_e_value=2103060	bias_p_value=1	consensus_score=223.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=48/32	major_frequency=9.877e-01	minor_base=G	minor_cov=1/0	new_cov=48/32	polymorphism_frequency=9.877e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=49/33
RA	5341	.	1	1136640	0	T	C	consensus_score=241.2	frequency=1	major_base=C	major_cov=50/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/34
RA	5342	.	1	1136654	0	T	C	consensus_score=246.8	frequency=1	major_base=C	major_cov=48/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/42
RA	5343	.	1	1136667	0	C	T	consensus_score=257.7	frequency=1	major_base=T	major_cov=48/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/43
RA	5344	.	1	1136689	0	A	G	consensus_score=269.1	frequency=1	major_base=G	major_cov=51/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/42
RA	5345	.	1	1136693	0	A	G	consensus_score=267.2	frequency=1	major_base=G	major_cov=51/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/42
RA	5346	.	1	1136723	0	A	G	consensus_score=230.8	frequency=1	major_base=G	major_cov=46/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/35
RA	5347	.	1	1136728	0	T	G	bias_e_value=2103060	bias_p_value=1	consensus_score=225.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=45/33	major_frequency=9.873e-01	minor_base=T	minor_cov=1/0	new_cov=45/33	polymorphism_frequency=9.873e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=46/33
RA	5348	.	1	1136729	0	A	G	consensus_score=227.5	frequency=1	major_base=G	major_cov=46/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/33
RA	5349	.	1	1136761	0	C	T	bias_e_value=1427750	bias_p_value=0.678894	consensus_score=214.4	fisher_strand_p_value=0.432099	frequency=1	ks_quality_p_value=0.729023	major_base=T	major_cov=46/34	major_frequency=9.877e-01	minor_base=C	minor_cov=0/1	new_cov=46/34	polymorphism_frequency=9.877e-01	polymorphism_score=-4.9	prediction=consensus	ref_cov=0/1	total_cov=46/35
RA	5350	.	1	1136800	0	C	T	consensus_score=201.9	frequency=1	major_base=T	major_cov=41/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/33
RA	5351	.	1	1136812	0	T	C	bias_e_value=1715600	bias_p_value=0.815766	consensus_score=199.6	fisher_strand_p_value=0.458333	frequency=1	ks_quality_p_value=0.999609	major_base=C	major_cov=39/32	major_frequency=9.861e-01	minor_base=T	minor_cov=0/1	new_cov=39/32	polymorphism_frequency=9.861e-01	polymorphism_score=-5.0	prediction=consensus	ref_cov=0/1	total_cov=39/33
RA	5352	.	1	1136833	0	G	C	consensus_score=187.1	frequency=1	major_base=C	major_cov=33/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/32
RA	5353	.	1	1136854	0	T	C	consensus_score=158.2	frequency=1	major_base=C	major_cov=26/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/29
RA	5354	.	1	1136856	0	A	G	consensus_score=155.9	frequency=1	major_base=G	major_cov=26/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/29
RA	5355	.	1	1136875	0	C	A	consensus_score=166.0	frequency=1	major_base=A	major_cov=31/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/31
RA	5356	.	1	1136896	0	C	A	consensus_score=161.1	frequency=1	major_base=A	major_cov=32/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/27
RA	5357	.	1	1136899	0	T	C	consensus_score=163.2	frequency=1	major_base=C	major_cov=32/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/27
RA	5358	.	1	1136902	0	T	A	consensus_score=168.1	frequency=1	major_base=A	major_cov=32/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/27
RA	5359	.	1	1136904	0	G	T	consensus_score=163.1	frequency=1	major_base=T	major_cov=32/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/27
RA	5360	.	1	1136905	0	G	A	consensus_score=157.4	frequency=1	major_base=A	major_cov=32/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/27
RA	5361	.	1	1136908	0	A	T	consensus_score=164.7	frequency=1	major_base=T	major_cov=32/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/27
RA	5362	.	1	1136911	0	T	C	consensus_score=162.9	frequency=1	major_base=C	major_cov=32/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/27
RA	5363	.	1	1136914	0	G	C	consensus_score=162.1	frequency=1	major_base=C	major_cov=32/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/27
RA	5364	.	1	1136920	0	T	G	consensus_score=168.3	frequency=1	major_base=G	major_cov=33/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/28
RA	5365	.	1	1136929	0	G	A	consensus_score=179.3	frequency=1	major_base=A	major_cov=36/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/30
RA	5366	.	1	1136937	0	G	A	consensus_score=187.2	frequency=1	major_base=A	major_cov=37/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/32
RA	5367	.	1	1137328	0	C	G	consensus_score=209.8	frequency=1	major_base=G	major_cov=32/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/41
RA	5368	.	1	1137337	0	C	T	consensus_score=188.8	frequency=1	major_base=T	major_cov=30/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/41
RA	5369	.	1	1137367	0	C	T	consensus_score=201.1	frequency=1	major_base=T	major_cov=34/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/41
RA	5370	.	1	1137397	0	A	G	consensus_score=215.1	frequency=1	major_base=G	major_cov=34/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/43
RA	5371	.	1	1137435	0	T	C	consensus_score=211.7	frequency=1	major_base=C	major_cov=33/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/40
RA	5372	.	1	1137496	0	G	T	consensus_score=208.6	frequency=1	major_base=T	major_cov=34/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/40
RA	5373	.	1	1137508	0	A	C	consensus_score=227.9	frequency=1	major_base=C	major_cov=35/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/45
RA	5374	.	1	1137529	0	A	T	consensus_score=232.6	frequency=1	major_base=T	major_cov=39/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/46
RA	5375	.	1	1137562	0	A	C	consensus_score=220.2	frequency=1	major_base=C	major_cov=37/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/39
RA	5376	.	1	1137574	0	C	T	consensus_score=199.7	frequency=1	major_base=T	major_cov=36/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/36
RA	5377	.	1	1137886	0	T	C	consensus_score=175.5	frequency=1	major_base=C	major_cov=29/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/33
RA	5378	.	1	1137895	0	C	T	consensus_score=160.6	frequency=1	major_base=T	major_cov=28/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/32
RA	5379	.	1	1137906	0	T	A	consensus_score=155.1	frequency=1	major_base=A	major_cov=25/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/32
RA	5380	.	1	1137907	0	T	A	consensus_score=153.3	frequency=1	major_base=A	major_cov=25/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/32
RA	5381	.	1	1137913	0	T	C	consensus_score=156.2	frequency=1	major_base=C	major_cov=26/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/32
RA	5382	.	1	1140382	0	G	A	consensus_score=145.5	frequency=1	major_base=A	major_cov=23/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/31
RA	5383	.	1	1140399	0	C	A	consensus_score=149.4	frequency=1	major_base=A	major_cov=23/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/32
RA	5384	.	1	1140412	0	C	T	consensus_score=161.7	frequency=1	major_base=T	major_cov=27/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/32
RA	5385	.	1	1140421	0	T	C	consensus_score=172.6	frequency=1	major_base=C	major_cov=30/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/31
RA	5386	.	1	1140442	0	T	C	consensus_score=176.0	frequency=1	major_base=C	major_cov=31/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/30
RA	5387	.	1	1140448	0	G	A	consensus_score=167.0	frequency=1	major_base=A	major_cov=33/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/30
RA	5388	.	1	1140461	0	G	A	consensus_score=173.5	frequency=1	major_base=A	major_cov=35/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/30
RA	5389	.	1	1140499	0	C	T	consensus_score=220.0	frequency=1	major_base=T	major_cov=41/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/41
RA	5390	.	1	1140550	0	T	C	consensus_score=234.3	frequency=1	major_base=C	major_cov=44/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/37
RA	5391	.	1	1140552	0	C	T	consensus_score=216.2	frequency=1	major_base=T	major_cov=44/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/37
RA	5392	.	1	1140575	0	T	C	consensus_score=211.1	frequency=1	major_base=C	major_cov=43/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/30
RA	5393	.	1	1140577	0	A	G	consensus_score=210.7	frequency=1	major_base=G	major_cov=43/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/30
RA	5394	.	1	1140584	0	T	C	consensus_score=212.2	frequency=1	major_base=C	major_cov=42/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/32
RA	5395	.	1	1140613	0	C	T	consensus_score=207.9	frequency=1	major_base=T	major_cov=38/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/39
RA	5396	.	1	1140615	0	A	G	consensus_score=221.6	frequency=1	major_base=G	major_cov=38/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/39
RA	5397	.	1	1140683	0	A	G	consensus_score=260.6	frequency=1	major_base=G	major_cov=41/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/50
RA	5398	.	1	1140730	0	G	A	consensus_score=236.1	frequency=1	major_base=A	major_cov=41/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/48
RA	5399	.	1	1140733	0	T	A	consensus_score=239.1	frequency=1	major_base=A	major_cov=41/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/48
RA	5400	.	1	1140735	0	G	T	consensus_score=239.3	frequency=1	major_base=T	major_cov=41/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/48
RA	5401	.	1	1140742	0	A	G	consensus_score=241.9	frequency=1	major_base=G	major_cov=39/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/44
RA	5402	.	1	1140745	0	A	G	consensus_score=239.9	frequency=1	major_base=G	major_cov=39/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/44
RA	5403	.	1	1140754	0	C	T	consensus_score=211.9	frequency=1	major_base=T	major_cov=36/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/44
RA	5404	.	1	1140756	0	G	A	consensus_score=211.4	frequency=1	major_base=A	major_cov=36/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/44
RA	5405	.	1	1140757	0	C	T	consensus_score=210.8	frequency=1	major_base=T	major_cov=36/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/44
RA	5406	.	1	1140760	0	T	C	bias_e_value=1696080	bias_p_value=0.806483	consensus_score=214.1	fisher_strand_p_value=0.45	frequency=1	ks_quality_p_value=0.99212	major_base=C	major_cov=35/44	major_frequency=9.875e-01	minor_base=A	minor_cov=1/0	new_cov=35/44	polymorphism_frequency=9.875e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/44
RA	5407	.	1	1140763	0	G	C	consensus_score=212.7	frequency=1	major_base=C	major_cov=36/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/44
RA	5408	.	1	1140780	0	C	T	consensus_score=219.5	frequency=1	major_base=T	major_cov=38/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/44
RA	5409	.	1	1140826	0	C	T	consensus_score=182.3	frequency=1	major_base=T	major_cov=29/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/35
RA	5410	.	1	1140829	0	A	G	consensus_score=173.4	frequency=1	major_base=G	major_cov=29/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/35
RA	5411	.	1	1140838	0	T	C	consensus_score=174.8	frequency=1	major_base=C	major_cov=27/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/34
RA	5412	.	1	1140850	0	A	G	consensus_score=162.1	frequency=1	major_base=G	major_cov=28/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/29
RA	5413	.	1	1140862	0	T	G	consensus_score=153.9	frequency=1	major_base=G	major_cov=30/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/24
RA	5414	.	1	1140905	0	G	A	consensus_score=129.8	frequency=1	major_base=A	major_cov=27/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/23
RA	5415	.	1	1140911	0	A	G	consensus_score=128.1	frequency=1	major_base=G	major_cov=25/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/21
RA	5416	.	1	1140936	0	G	A	consensus_score=123.7	frequency=1	major_base=A	major_cov=25/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/22
RA	5417	.	1	1140984	0	C	A	consensus_score=186.1	frequency=1	major_base=A	major_cov=33/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/33
RA	5418	.	1	1141088	0	T	G	consensus_score=182.9	frequency=1	major_base=G	major_cov=40/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/24
RA	5419	.	1	1141094	0	G	T	consensus_score=138.2	frequency=1	major_base=T	major_cov=32/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/20
RA	5420	.	1	1141096	0	T	G	consensus_score=151.4	frequency=1	major_base=G	major_cov=32/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/20
RA	5421	.	1	1141097	0	T	A	consensus_score=136.3	frequency=1	major_base=A	major_cov=32/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/20
RA	5422	.	1	1141103	0	C	T	consensus_score=137.6	frequency=1	major_base=T	major_cov=32/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/20
RA	5423	.	1	1141105	0	C	T	consensus_score=137.4	frequency=1	major_base=T	major_cov=32/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/20
RA	5424	.	1	1141109	0	A	C	consensus_score=143.4	frequency=1	major_base=C	major_cov=32/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/20
RA	5425	.	1	1141112	0	A	T	consensus_score=141.2	frequency=1	major_base=T	major_cov=32/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/20
RA	5426	.	1	1141118	0	T	G	consensus_score=137.9	frequency=1	major_base=G	major_cov=32/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/20
RA	5427	.	1	1141120	0	A	G	consensus_score=138.3	frequency=1	major_base=G	major_cov=32/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/20
RA	5428	.	1	1141121	0	C	T	consensus_score=140.5	frequency=1	major_base=T	major_cov=32/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/20
RA	5429	.	1	1141130	0	T	A	consensus_score=142.4	frequency=1	major_base=A	major_cov=33/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/21
RA	5430	.	1	1141132	0	C	T	consensus_score=143.8	frequency=1	major_base=T	major_cov=33/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/21
RA	5431	.	1	1141136	0	A	C	consensus_score=155.4	frequency=1	major_base=C	major_cov=33/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/21
RA	5432	.	1	1141138	0	G	A	consensus_score=143.6	frequency=1	major_base=A	major_cov=33/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/21
RA	5433	.	1	1141142	0	G	A	consensus_score=139.9	frequency=1	major_base=A	major_cov=33/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/21
RA	5434	.	1	1141151	0	A	G	consensus_score=187.3	frequency=1	major_base=G	major_cov=36/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/32
RA	5435	.	1	1141184	0	T	C	consensus_score=205.8	frequency=1	major_base=C	major_cov=39/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/33
RA	5436	.	1	1141214	0	G	A	consensus_score=194.5	frequency=1	major_base=A	major_cov=40/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/32
RA	5437	.	1	1141220	0	A	G	consensus_score=209.3	frequency=1	major_base=G	major_cov=40/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/33
RA	5438	.	1	1141235	0	T	C	consensus_score=203.6	frequency=1	major_base=C	major_cov=40/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/32
RA	5439	.	1	1141241	0	C	T	consensus_score=192.5	frequency=1	major_base=T	major_cov=39/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/32
RA	5440	.	1	1141283	0	A	G	consensus_score=225.0	frequency=1	major_base=G	major_cov=39/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/39
RA	5441	.	1	1141352	0	G	A	consensus_score=223.0	frequency=1	major_base=A	major_cov=40/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/42
RA	5442	.	1	1141370	0	C	T	consensus_score=221.4	frequency=1	major_base=T	major_cov=41/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/40
RA	5443	.	1	1141415	0	T	G	consensus_score=220.7	frequency=1	major_base=G	major_cov=40/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/37
RA	5444	.	1	1141445	0	T	C	consensus_score=176.2	frequency=1	major_base=C	major_cov=29/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/34
RA	5445	.	1	1141448	0	C	G	consensus_score=179.1	frequency=1	major_base=G	major_cov=29/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/34
RA	5446	.	1	1141451	0	C	T	consensus_score=178.1	frequency=1	major_base=T	major_cov=29/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/34
RA	5447	.	1	1141454	0	A	G	consensus_score=169.4	frequency=1	major_base=G	major_cov=29/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/34
RA	5448	.	1	1141460	0	A	G	consensus_score=173.9	frequency=1	major_base=G	major_cov=29/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/34
RA	5449	.	1	1141466	0	C	A	consensus_score=155.8	frequency=1	major_base=A	major_cov=26/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/33
RA	5450	.	1	1141469	0	A	T	consensus_score=156.6	frequency=1	major_base=T	major_cov=26/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/33
RA	5451	.	1	1141472	0	T	G	consensus_score=160.6	frequency=1	major_base=G	major_cov=26/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/33
RA	5452	.	1	1141475	0	A	T	consensus_score=156.5	frequency=1	major_base=T	major_cov=26/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/33
RA	5453	.	1	1141478	0	C	T	consensus_score=154.5	frequency=1	major_base=T	major_cov=26/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/33
RA	5454	.	1	1141484	0	C	T	consensus_score=163.7	frequency=1	major_base=T	major_cov=27/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/35
RA	5455	.	1	1141490	0	A	T	consensus_score=163.8	frequency=1	major_base=T	major_cov=27/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/35
RA	5456	.	1	1141493	0	C	T	consensus_score=166.3	frequency=1	major_base=T	major_cov=27/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/35
RA	5457	.	1	1141505	0	T	C	consensus_score=161.0	frequency=1	major_base=C	major_cov=25/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/32
RA	5458	.	1	1141511	0	C	A	consensus_score=152.3	frequency=1	major_base=A	major_cov=25/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/32
RA	5459	.	1	1141514	0	C	A	consensus_score=150.5	frequency=1	major_base=A	major_cov=25/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/32
RA	5460	.	1	1141520	0	A	T	consensus_score=108.9	frequency=1	major_base=T	major_cov=18/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/24
RA	5461	.	1	1141522	0	G	A	consensus_score=107.8	frequency=1	major_base=A	major_cov=18/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/24
RA	5462	.	1	1141526	0	G	A	consensus_score=109.6	frequency=1	major_base=A	major_cov=18/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/24
RA	5463	.	1	1141529	0	C	G	consensus_score=119.0	frequency=1	major_base=G	major_cov=18/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/24
RA	5464	.	1	1141535	0	A	C	consensus_score=162.6	frequency=1	major_base=C	major_cov=30/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/29
RA	5465	.	1	1141544	0	G	T	consensus_score=155.7	frequency=1	major_base=T	major_cov=29/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/29
RA	5466	.	1	1141550	0	T	A	consensus_score=150.8	frequency=1	major_base=A	major_cov=29/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/28
RA	5467	.	1	1141553	0	G	A	consensus_score=146.9	frequency=1	major_base=A	major_cov=29/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/28
RA	5468	.	1	1141554	0	G	C	consensus_score=162.8	frequency=1	major_base=C	major_cov=29/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/28
RA	5469	.	1	1141562	0	A	T	consensus_score=169.5	frequency=1	major_base=T	major_cov=28/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/32
RA	5470	.	1	1141577	0	G	A	bias_e_value=1738380	bias_p_value=0.826595	consensus_score=172.6	fisher_strand_p_value=0.47619	frequency=1	ks_quality_p_value=0.991841	major_base=A	major_cov=33/29	major_frequency=9.841e-01	minor_base=G	minor_cov=0/1	new_cov=33/29	polymorphism_frequency=9.841e-01	polymorphism_score=-4.9	prediction=consensus	ref_cov=0/1	total_cov=33/30
RA	5471	.	1	1141583	0	T	A	consensus_score=163.0	frequency=1	major_base=A	major_cov=32/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/29
RA	5472	.	1	1141586	0	C	T	consensus_score=163.8	frequency=1	major_base=T	major_cov=32/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/29
RA	5473	.	1	1141590	0	A	G	consensus_score=172.8	frequency=1	major_base=G	major_cov=32/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/29
RA	5474	.	1	1141595	0	C	T	consensus_score=159.5	frequency=1	major_base=T	major_cov=30/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/30
RA	5475	.	1	1141601	0	T	C	consensus_score=169.6	frequency=1	major_base=C	major_cov=30/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/29
RA	5476	.	1	1141604	0	A	G	consensus_score=169.7	frequency=1	major_base=G	major_cov=30/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/29
RA	5477	.	1	1141631	0	C	G	bias_e_value=1585500	bias_p_value=0.753902	consensus_score=170.7	fisher_strand_p_value=0.491803	frequency=1	ks_quality_p_value=0.785855	major_base=G	major_cov=31/29	major_frequency=9.836e-01	minor_base=C	minor_cov=0/1	new_cov=31/29	polymorphism_frequency=9.836e-01	polymorphism_score=-3.5	prediction=consensus	ref_cov=0/1	total_cov=31/30
RA	5478	.	1	1141640	0	C	T	bias_e_value=1742460	bias_p_value=0.828535	consensus_score=159.1	fisher_strand_p_value=0.491803	frequency=1	ks_quality_p_value=0.965632	major_base=T	major_cov=31/29	major_frequency=9.836e-01	minor_base=C	minor_cov=0/1	new_cov=31/29	polymorphism_frequency=9.836e-01	polymorphism_score=-5.1	prediction=consensus	ref_cov=0/1	total_cov=31/30
RA	5479	.	1	1141674	0	C	T	consensus_score=184.8	frequency=1	major_base=T	major_cov=36/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/33
RA	5480	.	1	1141683	0	G	A	consensus_score=189.6	frequency=1	major_base=A	major_cov=36/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/36
RA	5481	.	1	1141701	0	G	A	consensus_score=214.0	frequency=1	major_base=A	major_cov=36/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/40
RA	5482	.	1	1141710	0	G	A	bias_e_value=1709650	bias_p_value=0.812935	consensus_score=204.6	fisher_strand_p_value=0.454545	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=34/42	major_frequency=9.870e-01	minor_base=T	minor_cov=1/0	new_cov=34/42	polymorphism_frequency=9.870e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/42
RA	5483	.	1	1141724	0	G	A	bias_e_value=1732110	bias_p_value=0.823615	consensus_score=213.1	fisher_strand_p_value=0.468354	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=36/42	major_frequency=9.873e-01	minor_base=T	minor_cov=1/0	new_cov=36/42	polymorphism_frequency=9.873e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/42
RA	5484	.	1	1141806	0	G	T	consensus_score=203.8	frequency=1	major_base=T	major_cov=30/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/45
RA	5485	.	1	1141908	0	T	C	consensus_score=170.7	frequency=1	major_base=C	major_cov=24/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/36
RA	5486	.	1	1141917	0	T	G	consensus_score=153.6	frequency=1	major_base=G	major_cov=21/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/35
RA	5487	.	1	1141955	0	C	G	consensus_score=123.0	frequency=1	major_base=G	major_cov=16/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/28
RA	5488	.	1	1141971	0	A	G	consensus_score=97.8	frequency=1	major_base=G	major_cov=14/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/23
RA	5489	.	1	1143893	0	A	.	consensus_score=35.7	deleted=1	frequency=1	major_base=.	major_cov=6/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/5
RA	5490	.	1	1143894	0	T	.	consensus_score=35.7	deleted=1	frequency=1	major_base=.	major_cov=6/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/5
RA	5491	.	1	1143895	0	A	.	consensus_score=35.7	deleted=1	frequency=1	major_base=.	major_cov=6/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/5
RA	5492	.	1	1143896	0	C	.	consensus_score=35.7	deleted=1	frequency=1	major_base=.	major_cov=6/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/5
RA	5493	.	1	1145026	0	A	G	bias_e_value=771872	bias_p_value=0.367024	consensus_score=244.7	fisher_strand_p_value=0.116621	frequency=1	ks_quality_p_value=0.999216	major_base=G	major_cov=45/41	major_frequency=9.663e-01	minor_base=A	minor_cov=0/3	new_cov=45/41	polymorphism_frequency=9.663e-01	polymorphism_score=-6.2	prediction=consensus	ref_cov=0/3	total_cov=45/44
RA	5494	.	1	1145376	0	T	A	consensus_score=167.2	frequency=1	major_base=A	major_cov=27/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/33
RA	5495	.	1	1145747	0	T	C	consensus_score=196.9	frequency=1	major_base=C	major_cov=37/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/32
RA	5496	.	1	1146116	0	G	A	consensus_score=233.2	frequency=1	major_base=A	major_cov=35/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/47
RA	5497	.	1	1146466	1	.	A	consensus_score=215.0	frequency=1	major_base=A	major_cov=46/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/32
RA	5498	.	1	1147673	0	A	G	consensus_score=289.4	frequency=1	major_base=G	major_cov=54/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/49
RA	5499	.	1	1147693	0	G	A	consensus_score=284.4	frequency=1	major_base=A	major_cov=52/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/49
RA	5500	.	1	1148190	0	C	T	consensus_score=157.1	frequency=1	major_base=T	major_cov=16/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/39
RA	5501	.	1	1148824	0	G	A	consensus_score=132.2	frequency=1	major_base=A	major_cov=18/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/29
RA	5502	.	1	1148917	0	C	T	consensus_score=62.1	frequency=1	major_base=T	major_cov=13/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/11
RA	5503	.	1	1150382	0	A	C	consensus_score=264.1	frequency=1	major_base=C	major_cov=41/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/50
RA	5504	.	1	1151519	0	T	C	consensus_score=168.4	frequency=1	major_base=C	major_cov=34/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/27
RA	5505	.	1	1151535	0	T	C	consensus_score=167.6	frequency=1	major_base=C	major_cov=36/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/27
RA	5506	.	1	1151540	0	G	A	bias_e_value=293264	bias_p_value=0.139447	consensus_score=134.7	fisher_strand_p_value=0.031219	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=29/27	major_frequency=9.032e-01	minor_base=G	minor_cov=6/0	new_cov=29/27	polymorphism_frequency=9.032e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=6/0	total_cov=35/27
RA	5507	.	1	1151628	0	C	T	consensus_score=129.9	frequency=1	major_base=T	major_cov=35/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/17
RA	5508	.	1	1151679	0	G	A	consensus_score=152.1	frequency=1	major_base=A	major_cov=32/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/25
RA	5509	.	1	1151703	0	C	T	consensus_score=180.3	frequency=1	major_base=T	major_cov=37/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/29
RA	5510	.	1	1153470	0	C	T	consensus_score=165.6	frequency=1	major_base=T	major_cov=28/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/33
RA	5511	.	1	1153497	0	T	C	consensus_score=162.7	frequency=1	major_base=C	major_cov=27/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/32
RA	5512	.	1	1154248	0	A	G	bias_e_value=2075180	bias_p_value=0.986743	consensus_score=129.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.84165	major_base=G	major_cov=27/27	major_frequency=9.818e-01	minor_base=C	minor_cov=1/0	new_cov=27/27	polymorphism_frequency=9.818e-01	polymorphism_score=-5.8	prediction=consensus	ref_cov=0/0	total_cov=28/27
RA	5513	.	1	1155198	0	C	T	consensus_score=177.8	frequency=1	major_base=T	major_cov=28/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/38
RA	5514	.	1	1155292	0	C	T	consensus_score=177.3	frequency=1	major_base=T	major_cov=24/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/44
RA	5515	.	1	1158079	0	G	A	bias_e_value=36915.5	bias_p_value=0.0175533	consensus_score=144.2	fisher_strand_p_value=0.00251246	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=35/22	major_frequency=8.906e-01	minor_base=C	minor_cov=0/7	new_cov=35/22	polymorphism_frequency=8.906e-01	polymorphism_score=-2.9	prediction=consensus	ref_cov=0/1	total_cov=35/30
RA	5516	.	1	1158114	0	G	T	bias_e_value=0.089076	bias_p_value=4.23555e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=115.6	fisher_strand_p_value=2.01474e-09	frequency=2.787e-01	ks_quality_p_value=1	major_base=G	major_cov=36/8	major_frequency=7.213e-01	minor_base=T	minor_cov=0/17	new_cov=0/17	polymorphism_frequency=2.787e-01	polymorphism_score=11.8	prediction=polymorphism	ref_cov=36/8	total_cov=36/27
RA	5517	.	1	1158120	0	C	A	bias_e_value=0.0341225	bias_p_value=1.62252e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=101.2	fisher_strand_p_value=7.47542e-10	frequency=3.115e-01	ks_quality_p_value=0.985277	major_base=C	major_cov=34/8	major_frequency=6.885e-01	minor_base=A	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=3.115e-01	polymorphism_score=13.2	prediction=polymorphism	ref_cov=34/8	total_cov=34/27
RA	5518	.	1	1158600	0	A	G	consensus_score=169.2	frequency=1	major_base=G	major_cov=32/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/30
RA	5519	.	1	1158762	0	G	A	consensus_score=193.0	frequency=1	major_base=A	major_cov=37/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/35
RA	5520	.	1	1159377	0	C	A	consensus_score=16.7	frequency=1	major_base=A	major_cov=1/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=1/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=1/7
RA	5521	.	1	1159946	0	T	C	consensus_score=155.1	frequency=1	major_base=C	major_cov=29/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/26
RA	5522	.	1	1160838	0	T	C	consensus_score=211.2	frequency=1	major_base=C	major_cov=30/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/44
RA	5523	.	1	1160884	0	C	T	consensus_score=204.0	frequency=1	major_base=T	major_cov=27/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/44
RA	5524	.	1	1161182	1	.	C	consensus_score=277.7	frequency=1	major_base=C	major_cov=43/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/53
RA	5525	.	1	1161919	0	G	T	consensus_score=178.7	frequency=1	major_base=T	major_cov=29/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/37
RA	5526	.	1	1162007	0	C	T	bias_e_value=1645770	bias_p_value=0.782562	consensus_score=144.7	fisher_strand_p_value=0.433333	frequency=1	ks_quality_p_value=0.964488	major_base=T	major_cov=25/34	major_frequency=9.833e-01	minor_base=C	minor_cov=1/0	new_cov=25/34	polymorphism_frequency=9.833e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=26/34
RA	5527	.	1	1162654	0	C	A	consensus_score=179.9	frequency=1	major_base=A	major_cov=31/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/36
RA	5528	.	1	1163311	0	A	G	consensus_score=162.1	frequency=1	major_base=G	major_cov=29/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/28
RA	5529	.	1	1163845	0	A	G	consensus_score=182.2	frequency=1	major_base=G	major_cov=29/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/38
RA	5530	.	1	1164072	0	T	G	consensus_score=27.2	frequency=1	major_base=G	major_cov=10/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/2
RA	5531	.	1	1164364	0	C	T	consensus_score=190.9	frequency=1	major_base=T	major_cov=44/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/25
RA	5532	.	1	1165977	0	G	A	bias_e_value=0.388249	bias_p_value=1.84612e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=118.5	fisher_strand_p_value=1.08472e-08	frequency=2.400e-01	ks_quality_p_value=0.873946	major_base=G	major_cov=15/42	major_frequency=7.600e-01	minor_base=A	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.400e-01	polymorphism_score=11.0	prediction=polymorphism	ref_cov=15/42	total_cov=33/42
RA	5533	.	1	1165992	0	G	A	bias_e_value=1724430	bias_p_value=0.819962	consensus_score=166.7	fisher_strand_p_value=0.463768	frequency=1	ks_quality_p_value=0.999574	major_base=A	major_cov=31/37	major_frequency=9.855e-01	minor_base=C	minor_cov=1/0	new_cov=31/37	polymorphism_frequency=9.855e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/37
RA	5534	.	1	1169820	0	A	G	consensus_score=270.0	frequency=1	major_base=G	major_cov=37/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/57
RA	5535	.	1	1169915	0	G	A	bias_e_value=2103060	bias_p_value=1	consensus_score=231.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=36/51	major_frequency=9.886e-01	minor_base=G	minor_cov=0/1	new_cov=36/51	polymorphism_frequency=9.886e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=36/52
RA	5536	.	1	1171352	0	C	T	consensus_score=140.7	frequency=1	major_base=T	major_cov=6/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/43
RA	5537	.	1	1171398	0	A	G	consensus_score=118.9	frequency=1	major_base=G	major_cov=1/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=1/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=1/42
RA	5538	.	1	1172099	0	C	T	consensus_score=257.0	frequency=1	major_base=T	major_cov=38/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/57
RA	5539	.	1	1174152	0	G	A	consensus_score=149.7	frequency=1	major_base=A	major_cov=29/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/27
RA	5540	.	1	1176783	0	G	A	consensus_score=224.3	frequency=1	major_base=A	major_cov=42/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/42
RA	5541	.	1	1179194	0	T	G	consensus_score=235.4	frequency=1	major_base=G	major_cov=46/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/36
RA	5542	.	1	1179315	0	G	A	bias_e_value=2097710	bias_p_value=0.99746	consensus_score=190.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.929575	major_base=A	major_cov=30/48	major_frequency=9.873e-01	minor_base=G	minor_cov=0/1	new_cov=30/48	polymorphism_frequency=9.873e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=30/50
RA	5543	.	1	1179317	0	T	C	consensus_score=219.4	frequency=1	major_base=C	major_cov=30/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/50
RA	5544	.	1	1179518	0	C	A	consensus_score=151.6	frequency=1	major_base=A	major_cov=27/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/29
RA	5545	.	1	1181525	0	T	C	consensus_score=203.8	frequency=1	major_base=C	major_cov=43/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/30
RA	5546	.	1	1181617	0	T	G	consensus_score=203.2	frequency=1	major_base=G	major_cov=33/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/40
RA	5547	.	1	1183802	0	T	G	consensus_score=148.3	frequency=1	major_base=G	major_cov=24/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/28
RA	5548	.	1	1186972	0	T	C	consensus_score=156.0	frequency=1	major_base=C	major_cov=29/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/28
RA	5549	.	1	1187486	0	T	G	consensus_score=63.3	frequency=1	major_base=G	major_cov=15/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/8
RA	5550	.	1	1187988	0	C	T	consensus_score=95.6	frequency=1	major_base=T	major_cov=18/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/19
RA	5551	.	1	1188159	0	C	T	consensus_score=107.7	frequency=1	major_base=T	major_cov=12/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/29
RA	5552	.	1	1188679	0	T	G	consensus_score=108.9	frequency=1	major_base=G	major_cov=23/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/18
RA	5553	.	1	1190211	0	C	T	consensus_score=232.3	frequency=1	major_base=T	major_cov=48/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/37
RA	5554	.	1	1195789	0	A	G	consensus_score=151.7	frequency=1	major_base=G	major_cov=32/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/21
RA	5555	.	1	1196005	0	G	A	consensus_score=212.6	frequency=1	major_base=A	major_cov=34/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/45
RA	5556	.	1	1196194	0	A	G	consensus_score=199.8	frequency=1	major_base=G	major_cov=33/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/41
RA	5557	.	1	1197534	0	G	A	consensus_score=160.0	frequency=1	major_base=A	major_cov=29/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/30
RA	5558	.	1	1197858	0	T	G	consensus_score=99.8	frequency=1	major_base=G	major_cov=17/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/20
RA	5559	.	1	1197877	0	G	A	consensus_score=81.5	frequency=1	major_base=A	major_cov=13/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/18
RA	5560	.	1	1198079	0	A	C	consensus_score=142.8	frequency=1	major_base=C	major_cov=30/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/22
RA	5561	.	1	1199793	0	T	C	consensus_score=128.1	frequency=1	major_base=C	major_cov=24/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/23
RA	5562	.	1	1199874	0	G	T	consensus_score=150.4	frequency=1	major_base=T	major_cov=27/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/27
RA	5563	.	1	1199908	0	A	C	consensus_score=149.5	frequency=1	major_base=C	major_cov=26/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/26
RA	5564	.	1	1200956	0	C	T	consensus_score=186.2	frequency=1	major_base=T	major_cov=31/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/35
RA	5565	.	1	1201053	0	A	G	consensus_score=173.4	frequency=1	major_base=G	major_cov=27/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/34
RA	5566	.	1	1201351	0	A	G	bias_e_value=2103050	bias_p_value=0.999999	consensus_score=198.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998392	major_base=G	major_cov=29/41	major_frequency=9.859e-01	minor_base=A	minor_cov=0/1	new_cov=29/41	polymorphism_frequency=9.859e-01	polymorphism_score=-5.0	prediction=consensus	ref_cov=0/1	total_cov=29/42
RA	5567	.	1	1201629	0	G	A	bias_e_value=2103060	bias_p_value=1	consensus_score=187.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=30/40	major_frequency=9.859e-01	minor_base=G	minor_cov=0/1	new_cov=30/40	polymorphism_frequency=9.859e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=30/41
RA	5568	.	1	1201965	0	G	A	consensus_score=262.7	frequency=1	major_base=A	major_cov=50/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/41
RA	5569	.	1	1202139	0	T	G	consensus_score=21.2	frequency=1	major_base=G	major_cov=8/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/3
RA	5570	.	1	1207741	0	T	C	bias_e_value=1463730	bias_p_value=0.696	consensus_reject=FREQUENCY_CUTOFF	consensus_score=75.5	fisher_strand_p_value=0.817849	frequency=3.488e-01	ks_quality_p_value=0.403654	major_base=T	major_cov=33/23	major_frequency=6.512e-01	minor_base=C	minor_cov=19/11	new_cov=19/11	polymorphism_frequency=3.488e-01	polymorphism_score=55.5	prediction=polymorphism	ref_cov=33/23	total_cov=52/34
RA	5571	.	1	1208648	0	T	C	consensus_score=214.5	frequency=1	major_base=C	major_cov=38/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/37
RA	5572	.	1	1208705	0	A	G	consensus_score=192.2	frequency=1	major_base=G	major_cov=30/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/38
RA	5573	.	1	1208826	0	T	C	consensus_score=149.7	frequency=1	major_base=C	major_cov=34/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/22
RA	5574	.	1	1209472	0	A	C	consensus_score=154.8	frequency=1	major_base=C	major_cov=29/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/26
RA	5575	.	1	1210193	0	T	C	bias_e_value=2103060	bias_p_value=1	consensus_score=220.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=43/34	major_frequency=9.872e-01	minor_base=T	minor_cov=1/0	new_cov=43/34	polymorphism_frequency=9.872e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=44/34
RA	5576	.	1	1212678	0	C	T	consensus_score=207.4	frequency=1	major_base=T	major_cov=46/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/28
RA	5577	.	1	1212837	0	T	C	consensus_score=247.1	frequency=1	major_base=C	major_cov=48/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/38
RA	5578	.	1	1212862	0	A	G	consensus_score=224.1	frequency=1	major_base=G	major_cov=43/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/39
RA	5579	.	1	1214097	0	C	T	consensus_score=215.2	frequency=1	major_base=T	major_cov=46/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/33
RA	5580	.	1	1214877	0	A	C	consensus_score=263.2	frequency=1	major_base=C	major_cov=50/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/43
RA	5581	.	1	1216883	0	G	A	consensus_score=180.0	frequency=1	major_base=A	major_cov=29/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/37
RA	5582	.	1	1217170	0	G	T	consensus_score=233.2	frequency=1	major_base=T	major_cov=44/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/38
RA	5583	.	1	1217907	0	G	T	consensus_score=197.1	frequency=1	major_base=T	major_cov=41/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/31
RA	5584	.	1	1218531	0	A	G	consensus_score=211.8	frequency=1	major_base=G	major_cov=36/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/37
RA	5585	.	1	1218821	0	G	A	consensus_score=234.0	frequency=1	major_base=A	major_cov=52/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/35
RA	5586	.	1	1222540	0	C	T	consensus_score=228.5	frequency=1	major_base=T	major_cov=40/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/44
RA	5587	.	1	1223219	0	C	T	consensus_score=208.1	frequency=1	major_base=T	major_cov=43/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/38
RA	5588	.	1	1224664	0	T	C	consensus_score=220.0	frequency=1	major_base=C	major_cov=44/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/37
RA	5589	.	1	1226323	0	C	A	consensus_score=236.4	frequency=1	major_base=A	major_cov=50/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/37
RA	5590	.	1	1227703	0	C	T	consensus_score=55.1	frequency=1	major_base=T	major_cov=8/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/14
RA	5591	.	1	1228312	0	G	T	consensus_score=112.3	frequency=1	major_base=T	major_cov=25/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/18
RA	5592	.	1	1230286	0	G	A	consensus_score=32.4	frequency=1	major_base=A	major_cov=10/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/4
RA	5593	.	1	1231450	0	T	C	consensus_score=146.4	frequency=1	major_base=C	major_cov=26/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/25
RA	5594	.	1	1231746	0	C	T	consensus_score=132.8	frequency=1	major_base=T	major_cov=26/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/24
RA	5595	.	1	1232236	0	A	T	bias_e_value=798.178	bias_p_value=0.000379532	consensus_reject=FREQUENCY_CUTOFF	consensus_score=68.2	fisher_strand_p_value=3.35824e-05	frequency=3.182e-01	ks_quality_p_value=1	major_base=A	major_cov=20/10	major_frequency=6.818e-01	minor_base=T	minor_cov=0/14	new_cov=0/14	polymorphism_frequency=3.182e-01	polymorphism_score=13.5	prediction=polymorphism	ref_cov=20/10	total_cov=20/24
RA	5596	.	1	1232385	0	C	T	consensus_score=134.7	frequency=1	major_base=T	major_cov=22/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/29
RA	5597	.	1	1232501	0	T	G	consensus_score=186.1	frequency=1	major_base=G	major_cov=33/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/32
RA	5598	.	1	1233049	0	A	G	consensus_score=272.4	frequency=1	major_base=G	major_cov=61/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/35
RA	5599	.	1	1233950	0	G	A	consensus_score=150.1	frequency=1	major_base=A	major_cov=31/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/25
RA	5600	.	1	1234944	0	C	T	consensus_score=156.1	frequency=1	major_base=T	major_cov=25/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/34
RA	5601	.	1	1235414	0	A	T	consensus_score=85.2	frequency=1	major_base=T	major_cov=17/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/16
RA	5602	.	1	1235416	0	A	G	consensus_score=90.0	frequency=1	major_base=G	major_cov=17/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/16
RA	5603	.	1	1235420	0	C	T	consensus_score=81.3	frequency=1	major_base=T	major_cov=17/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/16
RA	5604	.	1	1235443	0	A	G	consensus_score=76.0	frequency=1	major_base=G	major_cov=17/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/12
RA	5605	.	1	1235467	0	A	G	consensus_score=60.6	frequency=1	major_base=G	major_cov=15/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/9
RA	5606	.	1	1235470	0	T	C	consensus_score=62.1	frequency=1	major_base=C	major_cov=15/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/9
RA	5607	.	1	1237232	0	T	C	consensus_score=192.7	frequency=1	major_base=C	major_cov=28/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/40
RA	5608	.	1	1238215	0	A	C	consensus_score=14.7	frequency=1	major_base=C	major_cov=5/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/2
RA	5609	.	1	1240798	0	A	G	consensus_score=172.7	frequency=1	major_base=G	major_cov=32/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/28
RA	5610	.	1	1241856	0	A	G	bias_e_value=1737750	bias_p_value=0.826299	consensus_score=223.8	fisher_strand_p_value=0.47191	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=41/47	major_frequency=9.888e-01	minor_base=A	minor_cov=1/0	new_cov=41/47	polymorphism_frequency=9.888e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=42/47
RA	5611	.	1	1241933	0	T	G	consensus_score=275.6	frequency=1	major_base=G	major_cov=50/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/48
RA	5612	.	1	1242432	0	C	T	consensus_score=203.7	frequency=1	major_base=T	major_cov=35/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/41
RA	5613	.	1	1242941	0	A	G	consensus_score=310.4	frequency=1	major_base=G	major_cov=54/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/52
RA	5614	.	1	1243022	0	G	A	consensus_score=267.0	frequency=1	major_base=A	major_cov=46/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/52
RA	5615	.	1	1244660	0	T	A	consensus_score=181.1	frequency=1	major_base=A	major_cov=36/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/31
RA	5616	.	1	1245138	0	C	T	consensus_score=216.9	frequency=1	major_base=T	major_cov=36/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/44
RA	5617	.	1	1245767	0	G	C	bias_e_value=1603950	bias_p_value=0.762677	consensus_score=126.5	fisher_strand_p_value=0.395833	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=29/18	major_frequency=9.792e-01	minor_base=G	minor_cov=0/1	new_cov=29/18	polymorphism_frequency=9.792e-01	polymorphism_score=-6.1	prediction=consensus	ref_cov=0/1	total_cov=29/19
RA	5618	.	1	1247132	0	C	T	bias_e_value=0.000996446	bias_p_value=4.73808e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=74.5	fisher_strand_p_value=1.84237e-11	frequency=3.521e-01	ks_quality_p_value=1	major_base=C	major_cov=36/10	major_frequency=6.479e-01	minor_base=T	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=3.521e-01	polymorphism_score=20.6	prediction=polymorphism	ref_cov=36/10	total_cov=36/35
RA	5619	.	1	1247322	0	C	G	consensus_score=202.0	frequency=1	major_base=G	major_cov=31/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/39
RA	5620	.	1	1247439	0	A	G	consensus_score=207.1	frequency=1	major_base=G	major_cov=46/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/30
RA	5621	.	1	1247944	0	T	C	consensus_score=232.3	frequency=1	major_base=C	major_cov=44/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/38
RA	5622	.	1	1248522	0	A	G	consensus_score=175.4	frequency=1	major_base=G	major_cov=31/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/30
RA	5623	.	1	1249892	0	C	T	consensus_score=194.2	frequency=1	major_base=T	major_cov=40/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/32
RA	5624	.	1	1252731	0	T	C	consensus_score=142.0	frequency=1	major_base=C	major_cov=34/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/19
RA	5625	.	1	1252893	0	A	G	consensus_score=155.8	frequency=1	major_base=G	major_cov=32/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/25
RA	5626	.	1	1255607	0	A	T	bias_e_value=0.0533175	bias_p_value=2.53524e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=96.4	fisher_strand_p_value=1.17583e-09	frequency=2.549e-01	ks_quality_p_value=1	major_base=A	major_cov=35/3	major_frequency=7.451e-01	minor_base=T	minor_cov=0/13	new_cov=0/13	polymorphism_frequency=2.549e-01	polymorphism_score=11.3	prediction=polymorphism	ref_cov=35/3	total_cov=35/16
RA	5627	.	1	1257604	0	T	C	consensus_score=187.2	frequency=1	major_base=C	major_cov=37/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/29
RA	5628	.	1	1259220	0	A	G	consensus_score=171.6	frequency=1	major_base=G	major_cov=37/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/25
RA	5629	.	1	1259446	0	A	G	consensus_score=229.0	frequency=1	major_base=G	major_cov=35/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/47
RA	5630	.	1	1259923	0	G	T	consensus_score=169.1	frequency=1	major_base=T	major_cov=38/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/25
RA	5631	.	1	1259974	0	G	A	bias_e_value=2103060	bias_p_value=1	consensus_score=203.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=43/32	major_frequency=9.868e-01	minor_base=G	minor_cov=1/0	new_cov=43/32	polymorphism_frequency=9.868e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=44/32
RA	5632	.	1	1260528	0	A	G	consensus_score=233.0	frequency=1	major_base=G	major_cov=40/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/41
RA	5633	.	1	1261014	0	G	A	bias_e_value=2031130	bias_p_value=0.965798	consensus_score=298.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.750128	major_base=A	major_cov=62/43	major_frequency=9.906e-01	minor_base=G	minor_cov=1/0	new_cov=62/43	polymorphism_frequency=9.906e-01	polymorphism_score=-5.4	prediction=consensus	ref_cov=1/0	total_cov=63/43
RA	5634	.	1	1261100	0	A	G	consensus_score=262.2	frequency=1	major_base=G	major_cov=59/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/35
RA	5635	.	1	1262063	0	A	G	consensus_score=164.3	frequency=1	major_base=G	major_cov=28/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/30
RA	5636	.	1	1263011	0	A	G	consensus_score=221.6	frequency=1	major_base=G	major_cov=44/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/35
RA	5637	.	1	1263816	0	T	G	consensus_score=207.5	frequency=1	major_base=G	major_cov=34/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/43
RA	5638	.	1	1264481	0	T	G	consensus_score=153.7	frequency=1	major_base=G	major_cov=24/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/30
RA	5639	.	1	1265765	0	C	T	bias_e_value=2103050	bias_p_value=0.999998	consensus_score=248.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.997805	major_base=T	major_cov=39/51	major_frequency=9.890e-01	minor_base=C	minor_cov=0/1	new_cov=39/51	polymorphism_frequency=9.890e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=39/53
RA	5640	.	1	1266136	0	C	T	consensus_score=168.7	frequency=1	major_base=T	major_cov=29/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/34
RA	5641	.	1	1266224	0	A	C	bias_e_value=0.0471113	bias_p_value=2.24013e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=75.4	fisher_strand_p_value=1.03275e-09	frequency=4.328e-01	ks_quality_p_value=1	major_base=A	major_cov=26/12	major_frequency=5.672e-01	minor_base=C	minor_cov=0/29	new_cov=0/29	polymorphism_frequency=4.328e-01	polymorphism_score=14.8	prediction=polymorphism	ref_cov=26/12	total_cov=26/42
RA	5642	.	1	1268054	0	G	A	consensus_score=230.5	frequency=1	major_base=A	major_cov=45/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/42
RA	5643	.	1	1271038	0	G	A	consensus_score=159.1	frequency=1	major_base=A	major_cov=31/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/28
RA	5644	.	1	1272896	0	A	G	consensus_score=289.3	frequency=1	major_base=G	major_cov=44/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/55
RA	5645	.	1	1273880	0	C	T	consensus_score=164.6	frequency=1	major_base=T	major_cov=29/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/29
RA	5646	.	1	1273904	0	A	G	consensus_score=133.5	frequency=1	major_base=G	major_cov=20/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/29
RA	5647	.	1	1275744	0	T	G	consensus_score=212.7	frequency=1	major_base=G	major_cov=39/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/37
RA	5648	.	1	1279005	0	G	A	consensus_score=251.2	frequency=1	major_base=A	major_cov=48/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/53
RA	5649	.	1	1279709	0	T	G	consensus_score=112.7	frequency=1	major_base=G	major_cov=38/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/4
RA	5650	.	1	1280426	0	A	G	consensus_score=235.7	frequency=1	major_base=G	major_cov=43/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/39
RA	5651	.	1	1280589	0	G	T	consensus_score=219.3	frequency=1	major_base=T	major_cov=46/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/35
RA	5652	.	1	1281343	0	T	C	consensus_score=212.4	frequency=1	major_base=C	major_cov=35/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/43
RA	5653	.	1	1282598	0	C	T	bias_e_value=1596230	bias_p_value=0.759004	consensus_score=196.3	fisher_strand_p_value=0.391892	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=28/45	major_frequency=9.865e-01	minor_base=G	minor_cov=1/0	new_cov=28/45	polymorphism_frequency=9.865e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/45
RA	5654	.	1	1283989	0	T	G	consensus_score=376.7	frequency=1	major_base=G	major_cov=68/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=68/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/62
RA	5655	.	1	1284065	0	T	C	bias_e_value=2103060	bias_p_value=1	consensus_score=409.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999612	major_base=C	major_cov=67/76	major_frequency=9.931e-01	minor_base=T	minor_cov=0/1	new_cov=67/76	polymorphism_frequency=9.931e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=67/77
RA	5656	.	1	1284666	0	C	T	consensus_score=217.4	frequency=1	major_base=T	major_cov=34/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/45
RA	5657	.	1	1285535	0	C	T	consensus_score=256.2	frequency=1	major_base=T	major_cov=53/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/38
RA	5658	.	1	1285834	0	A	C	consensus_score=270.0	frequency=1	major_base=C	major_cov=57/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/40
RA	5659	.	1	1285923	0	T	C	consensus_score=286.6	frequency=1	major_base=C	major_cov=52/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/49
RA	5660	.	1	1286003	0	T	C	consensus_score=293.7	frequency=1	major_base=C	major_cov=51/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/55
RA	5661	.	1	1286044	0	G	A	consensus_score=263.6	frequency=1	major_base=A	major_cov=41/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/55
RA	5662	.	1	1288531	1	.	T	bias_e_value=2103060	bias_p_value=0.999999	consensus_score=226.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998853	major_base=T	major_cov=42/41	major_frequency=9.881e-01	minor_base=.	minor_cov=1/0	new_cov=42/41	polymorphism_frequency=9.881e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=1/0	total_cov=43/41
RA	5663	.	1	1289020	0	A	G	consensus_score=316.4	frequency=1	major_base=G	major_cov=59/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/54
RA	5664	.	1	1290371	0	C	T	consensus_score=324.3	frequency=1	major_base=T	major_cov=46/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/66
RA	5665	.	1	1291079	0	A	G	consensus_score=253.0	frequency=1	major_base=G	major_cov=51/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/36
RA	5666	.	1	1292547	0	C	T	bias_e_value=0.0145709	bias_p_value=6.92845e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=154.3	fisher_strand_p_value=3.02293e-10	frequency=2.500e-01	ks_quality_p_value=1	major_base=C	major_cov=22/50	major_frequency=7.500e-01	minor_base=T	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.500e-01	polymorphism_score=14.5	prediction=polymorphism	ref_cov=22/50	total_cov=46/50
RA	5667	.	1	1294371	0	T	C	consensus_score=378.8	frequency=1	major_base=C	major_cov=42/89	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/89	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/89
RA	5668	.	1	1297484	0	C	T	consensus_score=284.0	frequency=1	major_base=T	major_cov=55/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/44
RA	5669	.	1	1297654	0	A	G	consensus_score=297.2	frequency=1	major_base=G	major_cov=48/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/55
RA	5670	.	1	1298078	0	G	T	consensus_score=238.9	frequency=1	major_base=T	major_cov=43/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/41
RA	5671	.	1	1298587	0	A	G	consensus_score=178.3	frequency=1	major_base=G	major_cov=28/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/34
RA	5672	.	1	1298716	0	T	C	consensus_score=214.2	frequency=1	major_base=C	major_cov=39/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/35
RA	5673	.	1	1304648	0	T	C	bias_e_value=627293	bias_p_value=0.298277	consensus_score=38.4	fisher_strand_p_value=0.184773	frequency=1	ks_quality_p_value=0.46827	major_base=C	major_cov=13/12	major_frequency=8.065e-01	minor_base=T	minor_cov=1/5	new_cov=13/12	polymorphism_frequency=8.065e-01	polymorphism_score=5.6	prediction=consensus	ref_cov=1/5	total_cov=14/17
RA	5674	.	1	1304649	0	A	T	bias_e_value=1044770	bias_p_value=0.496786	consensus_score=43.5	fisher_strand_p_value=0.184773	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=13/12	major_frequency=8.065e-01	minor_base=A	minor_cov=1/5	new_cov=13/12	polymorphism_frequency=8.065e-01	polymorphism_score=12.0	prediction=consensus	ref_cov=1/5	total_cov=14/17
RA	5675	.	1	1304654	0	C	.	bias_e_value=1044770	bias_p_value=0.496786	consensus_score=39.7	fisher_strand_p_value=0.184773	frequency=1	ks_quality_p_value=1	major_base=.	major_cov=13/12	major_frequency=8.065e-01	minor_base=C	minor_cov=1/5	new_cov=13/12	polymorphism_frequency=8.065e-01	polymorphism_score=21.1	prediction=consensus	ref_cov=1/5	total_cov=14/17
RA	5676	.	1	1304656	0	A	C	bias_e_value=1044770	bias_p_value=0.496786	consensus_score=42.6	fisher_strand_p_value=0.184773	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=13/12	major_frequency=8.065e-01	minor_base=A	minor_cov=1/5	new_cov=13/12	polymorphism_frequency=8.065e-01	polymorphism_score=9.8	prediction=consensus	ref_cov=1/5	total_cov=14/17
RA	5677	.	1	1304657	0	A	C	bias_e_value=1044770	bias_p_value=0.496786	consensus_score=43.1	fisher_strand_p_value=0.184773	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=13/12	major_frequency=8.065e-01	minor_base=A	minor_cov=1/5	new_cov=13/12	polymorphism_frequency=8.065e-01	polymorphism_score=9.2	prediction=consensus	ref_cov=1/5	total_cov=14/17
RA	5678	.	1	1304659	1	.	A	bias_e_value=1182750	bias_p_value=0.562395	consensus_score=54.0	fisher_strand_p_value=0.22619	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=13/12	major_frequency=8.929e-01	minor_base=.	minor_cov=0/3	new_cov=13/12	polymorphism_frequency=8.929e-01	polymorphism_score=4.0	prediction=consensus	ref_cov=0/3	total_cov=13/15
RA	5679	.	1	1304661	0	T	C	bias_e_value=1176700	bias_p_value=0.559517	consensus_score=49.1	fisher_strand_p_value=0.22619	frequency=1	ks_quality_p_value=0.991465	major_base=C	major_cov=13/12	major_frequency=8.929e-01	minor_base=T	minor_cov=0/3	new_cov=13/12	polymorphism_frequency=8.929e-01	polymorphism_score=-1.3	prediction=consensus	ref_cov=0/3	total_cov=13/15
RA	5680	.	1	1304669	0	A	T	bias_e_value=1752670	bias_p_value=0.83339	consensus_score=53.5	fisher_strand_p_value=0.481481	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=13/12	major_frequency=9.259e-01	minor_base=A	minor_cov=0/2	new_cov=13/12	polymorphism_frequency=9.259e-01	polymorphism_score=-2.3	prediction=consensus	ref_cov=0/2	total_cov=13/14
RA	5681	.	1	1304670	0	G	A	bias_e_value=1752670	bias_p_value=0.83339	consensus_score=48.9	fisher_strand_p_value=0.481481	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=13/12	major_frequency=9.259e-01	minor_base=G	minor_cov=0/2	new_cov=13/12	polymorphism_frequency=9.259e-01	polymorphism_score=-3.0	prediction=consensus	ref_cov=0/2	total_cov=13/14
RA	5682	.	1	1304671	0	T	C	bias_e_value=1735050	bias_p_value=0.825014	consensus_score=54.9	fisher_strand_p_value=0.481481	frequency=1	ks_quality_p_value=0.976575	major_base=C	major_cov=13/12	major_frequency=9.259e-01	minor_base=.	minor_cov=0/2	new_cov=13/12	polymorphism_frequency=9.259e-01	polymorphism_score=1.2	prediction=consensus	ref_cov=0/0	total_cov=13/14
RA	5683	.	1	1306451	0	A	G	consensus_score=282.6	frequency=1	major_base=G	major_cov=53/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/44
RA	5684	.	1	1308806	0	C	T	consensus_score=94.2	frequency=1	major_base=T	major_cov=20/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/16
RA	5685	.	1	1310073	1	.	A	consensus_score=205.6	frequency=1	major_base=A	major_cov=53/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/23
RA	5686	.	1	1310345	0	G	C	bias_e_value=1099970	bias_p_value=0.523034	consensus_reject=FREQUENCY_CUTOFF	consensus_score=234.0	fisher_strand_p_value=0.542084	frequency=2.683e-01	ks_quality_p_value=0.370262	major_base=G	major_cov=42/48	major_frequency=7.317e-01	minor_base=C	minor_cov=18/15	new_cov=18/15	polymorphism_frequency=2.683e-01	polymorphism_score=86.2	prediction=polymorphism	ref_cov=42/48	total_cov=60/63
RA	5687	.	1	1310568	0	G	A	consensus_score=182.4	frequency=1	major_base=A	major_cov=29/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/39
RA	5688	.	1	1311343	0	A	G	consensus_score=129.7	frequency=1	major_base=G	major_cov=25/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/23
RA	5689	.	1	1311646	0	A	G	consensus_score=242.7	frequency=1	major_base=G	major_cov=43/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/44
RA	5690	.	1	1312170	0	C	A	consensus_score=270.2	frequency=1	major_base=A	major_cov=49/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/50
RA	5691	.	1	1313867	0	T	G	bias_e_value=2.1625e-08	bias_p_value=1.02827e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=96.6	fisher_strand_p_value=2.79313e-16	frequency=4.342e-01	ks_quality_p_value=1	major_base=T	major_cov=5/38	major_frequency=5.658e-01	minor_base=G	minor_cov=33/0	new_cov=33/0	polymorphism_frequency=4.342e-01	polymorphism_score=12.0	prediction=polymorphism	ref_cov=5/38	total_cov=38/38
RA	5692	.	1	1313877	0	C	T	bias_e_value=0.0501585	bias_p_value=2.38503e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=100.8	fisher_strand_p_value=1.10289e-09	frequency=2.800e-01	ks_quality_p_value=1	major_base=C	major_cov=14/40	major_frequency=7.200e-01	minor_base=T	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.800e-01	polymorphism_score=11.3	prediction=polymorphism	ref_cov=14/40	total_cov=37/40
RA	5693	.	1	1315393	0	A	C	bias_e_value=2103060	bias_p_value=1	consensus_score=200.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=34/38	major_frequency=9.863e-01	minor_base=A	minor_cov=0/1	new_cov=34/38	polymorphism_frequency=9.863e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=34/39
RA	5694	.	1	1316827	0	A	G	consensus_score=186.0	frequency=1	major_base=G	major_cov=25/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/40
RA	5695	.	1	1319036	0	G	A	consensus_score=214.2	frequency=1	major_base=A	major_cov=41/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/35
RA	5696	.	1	1319226	0	C	T	consensus_score=199.6	frequency=1	major_base=T	major_cov=44/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/31
RA	5697	.	1	1319332	0	T	C	consensus_score=205.6	frequency=1	major_base=C	major_cov=37/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/35
RA	5698	.	1	1320484	0	C	.	bias_e_value=2103060	bias_p_value=1	consensus_score=219.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=.	major_cov=27/27	major_frequency=9.818e-01	minor_base=C	minor_cov=0/1	new_cov=27/27	polymorphism_frequency=9.818e-01	polymorphism_score=-3.6	prediction=consensus	ref_cov=0/1	total_cov=27/28
RA	5699	.	1	1320487	0	C	T	consensus_score=151.7	frequency=1	major_base=T	major_cov=27/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/28
RA	5700	.	1	1320736	0	A	G	bias_e_value=1682190	bias_p_value=0.799879	consensus_score=174.8	fisher_strand_p_value=0.438356	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=41/31	major_frequency=9.863e-01	minor_base=C	minor_cov=0/1	new_cov=41/31	polymorphism_frequency=9.863e-01	polymorphism_score=-6.0	prediction=consensus	ref_cov=0/0	total_cov=41/32
RA	5701	.	1	1323415	0	C	A	consensus_score=263.4	frequency=1	major_base=A	major_cov=43/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/55
RA	5702	.	1	1323482	0	C	A	consensus_score=215.0	frequency=1	major_base=A	major_cov=33/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/46
RA	5703	.	1	1324074	0	T	C	consensus_score=120.7	frequency=1	major_base=C	major_cov=19/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/24
RA	5704	.	1	1324452	0	C	T	consensus_score=275.0	frequency=1	major_base=T	major_cov=47/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/50
RA	5705	.	1	1326337	0	C	T	bias_e_value=2102960	bias_p_value=0.999955	consensus_score=193.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.990532	major_base=T	major_cov=40/32	major_frequency=9.863e-01	minor_base=.	minor_cov=1/0	new_cov=40/32	polymorphism_frequency=9.863e-01	polymorphism_score=-3.3	prediction=consensus	ref_cov=0/0	total_cov=41/32
RA	5706	.	1	1326986	0	G	T	consensus_score=258.7	frequency=1	major_base=T	major_cov=46/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/48
RA	5707	.	1	1329038	0	C	T	consensus_score=179.0	frequency=1	major_base=T	major_cov=27/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/39
RA	5708	.	1	1329690	0	C	T	consensus_score=199.1	frequency=1	major_base=T	major_cov=42/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/33
RA	5709	.	1	1332322	0	C	T	consensus_score=146.5	frequency=1	major_base=T	major_cov=31/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/23
RA	5710	.	1	1333399	0	A	.	bias_e_value=1299510	bias_p_value=0.617913	consensus_reject=FREQUENCY_CUTOFF	consensus_score=25.5	fisher_strand_p_value=0.265744	frequency=6.118e-01	ks_quality_p_value=1	major_base=.	major_cov=28/24	major_frequency=6.118e-01	minor_base=A	minor_cov=13/20	new_cov=28/24	polymorphism_frequency=6.118e-01	polymorphism_score=137.3	prediction=polymorphism	ref_cov=13/20	total_cov=41/44
RA	5711	.	1	1333400	0	G	.	bias_e_value=1328490	bias_p_value=0.631697	consensus_reject=FREQUENCY_CUTOFF	consensus_score=13.5	fisher_strand_p_value=0.277233	frequency=6.047e-01	ks_quality_p_value=0.996638	major_base=.	major_cov=28/24	major_frequency=6.047e-01	minor_base=G	minor_cov=14/20	new_cov=28/24	polymorphism_frequency=6.047e-01	polymorphism_score=155.7	prediction=polymorphism	ref_cov=14/20	total_cov=42/44
RA	5712	.	1	1333488	1	.	A	bias_e_value=1622580	bias_p_value=0.771536	consensus_reject=FREQUENCY_CUTOFF	consensus_score=48.9	fisher_strand_p_value=0.43731	frequency=5.000e-01	ks_quality_p_value=0.927306	major_base=.	major_cov=24/29	major_frequency=5.000e-01	minor_base=A	minor_cov=29/24	new_cov=29/24	polymorphism_frequency=5.000e-01	polymorphism_score=230.9	prediction=polymorphism	ref_cov=24/29	total_cov=53/53
RA	5713	.	1	1333488	2	.	G	bias_e_value=1680370	bias_p_value=0.799015	consensus_reject=FREQUENCY_CUTOFF	consensus_score=57.0	fisher_strand_p_value=0.43731	frequency=5.000e-01	ks_quality_p_value=1	major_base=.	major_cov=24/29	major_frequency=5.000e-01	minor_base=G	minor_cov=29/24	new_cov=29/24	polymorphism_frequency=5.000e-01	polymorphism_score=251.2	prediction=polymorphism	ref_cov=24/29	total_cov=53/53
RA	5714	.	1	1333500	0	C	T	bias_e_value=64366.2	bias_p_value=0.030606	consensus_reject=FREQUENCY_CUTOFF	consensus_score=28.5	fisher_strand_p_value=0.691445	frequency=4.706e-01	ks_quality_p_value=0.00699028	major_base=C	major_cov=24/30	major_frequency=5.294e-01	minor_base=T	minor_cov=24/24	new_cov=24/24	polymorphism_frequency=4.706e-01	polymorphism_score=96.3	prediction=polymorphism	ref_cov=24/30	total_cov=48/54
RA	5715	.	1	1333502	1	.	A	bias_e_value=1996.88	bias_p_value=0.000949513	consensus_reject=FREQUENCY_CUTOFF	consensus_score=70.5	fisher_strand_p_value=0.691445	frequency=4.706e-01	ks_quality_p_value=0.000133442	major_base=.	major_cov=24/30	major_frequency=5.294e-01	minor_base=A	minor_cov=24/24	new_cov=24/24	polymorphism_frequency=4.706e-01	polymorphism_score=206.6	prediction=polymorphism	ref_cov=24/30	total_cov=48/54
RA	5716	.	1	1333503	0	C	T	bias_e_value=9015.08	bias_p_value=0.00428665	consensus_reject=FREQUENCY_CUTOFF	consensus_score=26.6	fisher_strand_p_value=0.691445	frequency=4.706e-01	ks_quality_p_value=0.000720499	major_base=C	major_cov=24/30	major_frequency=5.294e-01	minor_base=T	minor_cov=24/24	new_cov=24/24	polymorphism_frequency=4.706e-01	polymorphism_score=97.5	prediction=polymorphism	ref_cov=24/30	total_cov=48/54
RA	5717	.	1	1333504	0	G	A	bias_e_value=3.52204e-06	bias_p_value=1.67472e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=27.2	fisher_strand_p_value=0.691445	frequency=4.706e-01	ks_quality_p_value=7.67265e-14	major_base=G	major_cov=24/30	major_frequency=5.294e-01	minor_base=A	minor_cov=24/24	new_cov=24/24	polymorphism_frequency=4.706e-01	polymorphism_score=95.6	prediction=polymorphism	ref_cov=24/30	total_cov=48/54
RA	5718	.	1	1333509	0	G	A	bias_e_value=116056	bias_p_value=0.0551843	consensus_reject=FREQUENCY_CUTOFF	consensus_score=27.0	fisher_strand_p_value=0.691445	frequency=4.706e-01	ks_quality_p_value=0.0141906	major_base=G	major_cov=24/30	major_frequency=5.294e-01	minor_base=A	minor_cov=24/24	new_cov=24/24	polymorphism_frequency=4.706e-01	polymorphism_score=97.9	prediction=polymorphism	ref_cov=24/30	total_cov=48/54
RA	5719	.	1	1333510	0	G	A	bias_e_value=197182	bias_p_value=0.0937596	consensus_reject=FREQUENCY_CUTOFF	consensus_score=27.6	fisher_strand_p_value=0.691445	frequency=4.706e-01	ks_quality_p_value=0.0272806	major_base=G	major_cov=24/30	major_frequency=5.294e-01	minor_base=A	minor_cov=24/24	new_cov=24/24	polymorphism_frequency=4.706e-01	polymorphism_score=98.4	prediction=polymorphism	ref_cov=24/30	total_cov=48/54
RA	5720	.	1	1333513	0	G	A	bias_e_value=1956180	bias_p_value=0.930159	consensus_reject=FREQUENCY_CUTOFF	consensus_score=29.4	fisher_strand_p_value=0.691445	frequency=4.706e-01	ks_quality_p_value=0.940565	major_base=G	major_cov=24/30	major_frequency=5.294e-01	minor_base=A	minor_cov=24/24	new_cov=24/24	polymorphism_frequency=4.706e-01	polymorphism_score=95.1	prediction=polymorphism	ref_cov=24/30	total_cov=48/54
RA	5721	.	1	1333518	0	A	G	bias_e_value=1856440	bias_p_value=0.882735	consensus_reject=FREQUENCY_CUTOFF	consensus_score=20.0	fisher_strand_p_value=0.556631	frequency=4.757e-01	ks_quality_p_value=1	major_base=A	major_cov=24/30	major_frequency=5.243e-01	minor_base=G	minor_cov=25/24	new_cov=25/24	polymorphism_frequency=4.757e-01	polymorphism_score=107.2	prediction=polymorphism	ref_cov=24/30	total_cov=49/54
RA	5722	.	1	1333553	0	T	C	bias_e_value=1206350	bias_p_value=0.573615	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=7.4	fisher_strand_p_value=0.409035	frequency=4.839e-01	ks_quality_p_value=0.571649	major_base=T	major_cov=22/26	major_frequency=5.161e-01	minor_base=C	minor_cov=25/20	new_cov=25/20	polymorphism_frequency=4.839e-01	polymorphism_score=96.5	prediction=polymorphism	ref_cov=22/26	total_cov=47/46
RA	5723	.	1	1333566	0	T	A	bias_e_value=1598070	bias_p_value=0.75988	consensus_reject=FREQUENCY_CUTOFF	consensus_score=51.2	fisher_strand_p_value=0.392828	frequency=4.713e-01	ks_quality_p_value=1	major_base=T	major_cov=21/25	major_frequency=5.287e-01	minor_base=A	minor_cov=23/18	new_cov=23/18	polymorphism_frequency=4.713e-01	polymorphism_score=124.5	prediction=polymorphism	ref_cov=21/25	total_cov=44/43
RA	5724	.	1	1333569	0	A	G	bias_e_value=1598070	bias_p_value=0.75988	consensus_reject=FREQUENCY_CUTOFF	consensus_score=17.4	fisher_strand_p_value=0.392828	frequency=4.713e-01	ks_quality_p_value=1	major_base=A	major_cov=21/25	major_frequency=5.287e-01	minor_base=G	minor_cov=23/18	new_cov=23/18	polymorphism_frequency=4.713e-01	polymorphism_score=86.9	prediction=polymorphism	ref_cov=21/25	total_cov=44/43
RA	5725	.	1	1333582	0	C	A	bias_e_value=1072110	bias_p_value=0.509787	consensus_reject=FREQUENCY_CUTOFF	consensus_score=41.1	fisher_strand_p_value=0.274637	frequency=4.699e-01	ks_quality_p_value=0.701173	major_base=C	major_cov=19/25	major_frequency=5.301e-01	minor_base=A	minor_cov=22/17	new_cov=22/17	polymorphism_frequency=4.699e-01	polymorphism_score=103.4	prediction=polymorphism	ref_cov=19/25	total_cov=41/42
RA	5726	.	1	1333599	0	A	G	bias_e_value=1928450	bias_p_value=0.916977	consensus_reject=FREQUENCY_CUTOFF	consensus_score=24.9	fisher_strand_p_value=0.634433	frequency=4.306e-01	ks_quality_p_value=0.979216	major_base=A	major_cov=19/22	major_frequency=5.694e-01	minor_base=G	minor_cov=17/14	new_cov=17/14	polymorphism_frequency=4.306e-01	polymorphism_score=65.0	prediction=polymorphism	ref_cov=19/22	total_cov=36/36
RA	5727	.	1	1333604	0	A	G	bias_e_value=1919940	bias_p_value=0.912928	consensus_reject=FREQUENCY_CUTOFF	consensus_score=30.0	fisher_strand_p_value=0.61701	frequency=4.154e-01	ks_quality_p_value=0.993275	major_base=A	major_cov=18/20	major_frequency=5.846e-01	minor_base=G	minor_cov=15/12	new_cov=15/12	polymorphism_frequency=4.154e-01	polymorphism_score=53.7	prediction=polymorphism	ref_cov=18/20	total_cov=33/32
RA	5728	.	1	1333607	0	C	T	bias_e_value=57057.5	bias_p_value=0.0271308	consensus_reject=FREQUENCY_CUTOFF	consensus_score=32.5	fisher_strand_p_value=0.61701	frequency=4.154e-01	ks_quality_p_value=0.00679089	major_base=C	major_cov=18/20	major_frequency=5.846e-01	minor_base=T	minor_cov=15/12	new_cov=15/12	polymorphism_frequency=4.154e-01	polymorphism_score=52.3	prediction=polymorphism	ref_cov=18/20	total_cov=33/32
RA	5729	.	1	1333627	0	C	A	bias_e_value=2044740	bias_p_value=0.972268	consensus_reject=FREQUENCY_CUTOFF	consensus_score=32.4	fisher_strand_p_value=0.773931	frequency=6.000e-01	ks_quality_p_value=1	major_base=A	major_cov=13/17	major_frequency=6.000e-01	minor_base=C	minor_cov=10/10	new_cov=13/17	polymorphism_frequency=6.000e-01	polymorphism_score=54.0	prediction=polymorphism	ref_cov=10/10	total_cov=23/27
RA	5730	.	1	1333631	0	C	T	bias_e_value=2044740	bias_p_value=0.972268	consensus_reject=FREQUENCY_CUTOFF	consensus_score=33.0	fisher_strand_p_value=0.773931	frequency=4.000e-01	ks_quality_p_value=1	major_base=C	major_cov=13/17	major_frequency=6.000e-01	minor_base=T	minor_cov=10/10	new_cov=10/10	polymorphism_frequency=4.000e-01	polymorphism_score=34.9	prediction=polymorphism	ref_cov=13/17	total_cov=23/27
RA	5731	.	1	1333637	0	C	T	bias_e_value=1863520	bias_p_value=0.8861	consensus_reject=FREQUENCY_CUTOFF	consensus_score=30.8	fisher_strand_p_value=0.562426	frequency=4.043e-01	ks_quality_p_value=1	major_base=C	major_cov=12/16	major_frequency=5.957e-01	minor_base=T	minor_cov=10/9	new_cov=10/9	polymorphism_frequency=4.043e-01	polymorphism_score=32.2	prediction=polymorphism	ref_cov=12/16	total_cov=22/25
RA	5732	.	1	1333640	0	T	G	bias_e_value=1827310	bias_p_value=0.868883	consensus_reject=FREQUENCY_CUTOFF	consensus_score=29.1	fisher_strand_p_value=0.550382	frequency=4.130e-01	ks_quality_p_value=0.969868	major_base=T	major_cov=11/16	major_frequency=5.870e-01	minor_base=G	minor_cov=10/9	new_cov=10/9	polymorphism_frequency=4.130e-01	polymorphism_score=48.2	prediction=polymorphism	ref_cov=11/16	total_cov=21/25
RA	5733	.	1	1333646	0	T	A	bias_e_value=1726820	bias_p_value=0.821099	consensus_reject=FREQUENCY_CUTOFF	consensus_score=31.8	fisher_strand_p_value=0.531713	frequency=4.186e-01	ks_quality_p_value=0.874631	major_base=T	major_cov=9/16	major_frequency=5.814e-01	minor_base=A	minor_cov=9/9	new_cov=9/9	polymorphism_frequency=4.186e-01	polymorphism_score=54.0	prediction=polymorphism	ref_cov=9/16	total_cov=18/25
RA	5734	.	1	1333649	0	T	A	bias_e_value=1824550	bias_p_value=0.86757	consensus_reject=FREQUENCY_CUTOFF	consensus_score=36.1	fisher_strand_p_value=0.531713	frequency=4.186e-01	ks_quality_p_value=1	major_base=T	major_cov=9/16	major_frequency=5.814e-01	minor_base=A	minor_cov=9/9	new_cov=9/9	polymorphism_frequency=4.186e-01	polymorphism_score=51.6	prediction=polymorphism	ref_cov=9/16	total_cov=18/25
RA	5735	.	1	1333655	0	C	G	bias_e_value=1318360	bias_p_value=0.62688	consensus_reject=FREQUENCY_CUTOFF	consensus_score=37.6	fisher_strand_p_value=0.285854	frequency=3.611e-01	ks_quality_p_value=0.953548	major_base=C	major_cov=7/16	major_frequency=6.389e-01	minor_base=G	minor_cov=7/6	new_cov=7/6	polymorphism_frequency=3.611e-01	polymorphism_score=36.3	prediction=polymorphism	ref_cov=7/16	total_cov=14/22
RA	5736	.	1	1333664	0	T	C	bias_e_value=1643300	bias_p_value=0.781386	consensus_reject=FREQUENCY_CUTOFF	consensus_score=18.3	fisher_strand_p_value=0.431998	frequency=3.448e-01	ks_quality_p_value=0.964353	major_base=T	major_cov=6/13	major_frequency=6.552e-01	minor_base=C	minor_cov=5/5	new_cov=5/5	polymorphism_frequency=3.448e-01	polymorphism_score=16.5	prediction=polymorphism	ref_cov=6/13	total_cov=11/18
RA	5737	.	1	1335437	0	C	T	consensus_score=164.0	frequency=1	major_base=T	major_cov=29/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/32
RA	5738	.	1	1335521	0	G	A	consensus_score=160.5	frequency=1	major_base=A	major_cov=28/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/32
RA	5739	.	1	1335584	0	C	T	consensus_score=170.5	frequency=1	major_base=T	major_cov=26/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/37
RA	5740	.	1	1335879	0	T	C	consensus_score=239.2	frequency=1	major_base=C	major_cov=40/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/43
RA	5741	.	1	1336210	0	A	G	consensus_score=331.7	frequency=1	major_base=G	major_cov=54/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/60
RA	5742	.	1	1338965	0	G	C	consensus_score=56.5	deleted=1	frequency=1	major_base=C	major_cov=15/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/6
RA	5743	.	1	1338966	0	G	A	consensus_score=51.0	deleted=1	frequency=1	major_base=A	major_cov=15/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/6
RA	5744	.	1	1338971	0	A	T	consensus_score=58.5	deleted=1	frequency=1	major_base=T	major_cov=16/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/7
RA	5745	.	1	1338977	0	A	C	consensus_score=59.3	deleted=1	frequency=1	major_base=C	major_cov=16/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/7
RA	5746	.	1	1338986	0	T	C	consensus_score=70.1	frequency=1	major_base=C	major_cov=18/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/8
RA	5747	.	1	1339007	0	A	T	consensus_score=92.8	frequency=1	major_base=T	major_cov=22/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/14
RA	5748	.	1	1339010	0	G	A	consensus_score=89.4	frequency=1	major_base=A	major_cov=22/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/14
RA	5749	.	1	1339016	0	A	G	consensus_score=106.3	frequency=1	major_base=G	major_cov=22/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/16
RA	5750	.	1	1339022	0	C	T	consensus_score=103.3	frequency=1	major_base=T	major_cov=22/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/16
RA	5751	.	1	1339023	0	T	C	consensus_score=102.5	frequency=1	major_base=C	major_cov=22/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/16
RA	5752	.	1	1339031	0	G	A	consensus_score=119.3	frequency=1	major_base=A	major_cov=25/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/18
RA	5753	.	1	1339040	0	A	G	bias_e_value=902500	bias_p_value=0.429137	consensus_score=132.7	fisher_strand_p_value=0.4	frequency=1	ks_quality_p_value=0.367879	major_base=G	major_cov=30/19	major_frequency=9.800e-01	minor_base=.	minor_cov=0/1	new_cov=30/19	polymorphism_frequency=9.800e-01	polymorphism_score=-3.0	prediction=consensus	ref_cov=0/0	total_cov=30/20
RA	5754	.	1	1339049	0	A	G	bias_e_value=2102660	bias_p_value=0.99981	consensus_score=141.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.980583	major_base=G	major_cov=29/21	major_frequency=9.804e-01	minor_base=C	minor_cov=1/0	new_cov=29/21	polymorphism_frequency=9.804e-01	polymorphism_score=-3.6	prediction=consensus	ref_cov=0/0	total_cov=30/21
RA	5755	.	1	1339072	0	A	G	consensus_score=149.4	frequency=1	major_base=G	major_cov=30/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/25
RA	5756	.	1	1339100	0	T	C	consensus_score=212.7	frequency=1	major_base=C	major_cov=37/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/36
RA	5757	.	1	1339110	0	T	C	consensus_score=216.1	frequency=1	major_base=C	major_cov=38/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/36
RA	5758	.	1	1339136	0	T	C	consensus_score=204.3	frequency=1	major_base=C	major_cov=38/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/36
RA	5759	.	1	1339183	0	T	C	consensus_score=215.8	frequency=1	major_base=C	major_cov=35/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/43
RA	5760	.	1	1339187	0	G	A	consensus_score=197.3	frequency=1	major_base=A	major_cov=34/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/40
RA	5761	.	1	1339190	0	T	C	consensus_score=215.6	frequency=1	major_base=C	major_cov=34/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/40
RA	5762	.	1	1339201	0	C	T	consensus_score=201.9	frequency=1	major_base=T	major_cov=36/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/40
RA	5763	.	1	1339231	0	A	C	consensus_score=196.3	frequency=1	major_base=C	major_cov=30/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/38
RA	5764	.	1	1339246	0	A	G	consensus_score=182.1	frequency=1	major_base=G	major_cov=32/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/31
RA	5765	.	1	1339258	0	T	G	consensus_score=173.2	frequency=1	major_base=G	major_cov=32/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/28
RA	5766	.	1	1339264	0	T	C	consensus_score=173.3	frequency=1	major_base=C	major_cov=31/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/29
RA	5767	.	1	1339285	0	C	T	consensus_score=139.9	frequency=1	major_base=T	major_cov=24/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/28
RA	5768	.	1	1339294	0	T	A	consensus_score=135.2	frequency=1	major_base=A	major_cov=23/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/28
RA	5769	.	1	1339303	0	T	C	consensus_score=128.7	frequency=1	major_base=C	major_cov=23/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/22
RA	5770	.	1	1339306	0	C	T	consensus_score=118.7	frequency=1	major_base=T	major_cov=23/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/22
RA	5771	.	1	1339314	0	T	C	consensus_score=136.3	frequency=1	major_base=C	major_cov=28/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/20
RA	5772	.	1	1339321	0	A	T	consensus_score=129.8	frequency=1	major_base=T	major_cov=29/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/19
RA	5773	.	1	1339335	0	G	A	bias_e_value=1547890	bias_p_value=0.736019	consensus_score=116.7	fisher_strand_p_value=0.369565	frequency=1	ks_quality_p_value=0.996143	major_base=A	major_cov=29/16	major_frequency=9.783e-01	minor_base=G	minor_cov=0/1	new_cov=29/16	polymorphism_frequency=9.783e-01	polymorphism_score=-4.9	prediction=consensus	ref_cov=0/1	total_cov=29/17
RA	5774	.	1	1339336	0	A	G	bias_e_value=1550130	bias_p_value=0.737085	consensus_score=125.1	fisher_strand_p_value=0.369565	frequency=1	ks_quality_p_value=0.999034	major_base=G	major_cov=29/16	major_frequency=9.783e-01	minor_base=A	minor_cov=0/1	new_cov=29/16	polymorphism_frequency=9.783e-01	polymorphism_score=-4.7	prediction=consensus	ref_cov=0/1	total_cov=29/17
RA	5775	.	1	1339346	0	C	T	consensus_score=118.5	frequency=1	major_base=T	major_cov=28/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/17
RA	5776	.	1	1339355	0	G	A	consensus_score=110.5	frequency=1	major_base=A	major_cov=27/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/16
RA	5777	.	1	1339386	0	C	.	consensus_score=97.5	frequency=1	major_base=.	major_cov=16/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/8
RA	5778	.	1	1339387	0	G	.	consensus_score=97.5	frequency=1	major_base=.	major_cov=16/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/8
RA	5779	.	1	1339388	0	C	.	consensus_score=97.5	frequency=1	major_base=.	major_cov=16/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/8
RA	5780	.	1	1339389	0	G	.	consensus_score=97.5	frequency=1	major_base=.	major_cov=16/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/8
RA	5781	.	1	1339391	0	G	A	consensus_score=65.9	frequency=1	major_base=A	major_cov=16/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/8
RA	5782	.	1	1339397	0	T	.	consensus_score=97.6	frequency=1	major_base=.	major_cov=16/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/8
RA	5783	.	1	1339398	0	G	.	consensus_score=97.6	frequency=1	major_base=.	major_cov=16/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/8
RA	5784	.	1	1339399	0	T	.	consensus_score=97.6	frequency=1	major_base=.	major_cov=16/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/8
RA	5785	.	1	1339400	0	A	.	consensus_score=97.6	frequency=1	major_base=.	major_cov=16/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/8
RA	5786	.	1	1339401	0	A	C	consensus_score=62.8	frequency=1	major_base=C	major_cov=16/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/8
RA	5787	.	1	1339404	0	A	.	consensus_score=97.7	frequency=1	major_base=.	major_cov=16/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/8
RA	5788	.	1	1339405	0	T	.	consensus_score=97.7	frequency=1	major_base=.	major_cov=16/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/8
RA	5789	.	1	1339406	0	G	C	consensus_score=65.7	frequency=1	major_base=C	major_cov=16/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/8
RA	5790	.	1	1339408	0	T	.	consensus_score=96.9	frequency=1	major_base=.	major_cov=16/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/8
RA	5791	.	1	1339409	0	C	.	consensus_score=96.9	frequency=1	major_base=.	major_cov=16/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/8
RA	5792	.	1	1339412	0	T	C	consensus_score=64.2	frequency=1	major_base=C	major_cov=16/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/8
RA	5793	.	1	1339417	0	G	A	consensus_score=88.3	frequency=1	major_base=A	major_cov=20/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/14
RA	5794	.	1	1339433	0	T	C	consensus_score=102.0	frequency=1	major_base=C	major_cov=21/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/17
RA	5795	.	1	1339434	0	T	C	consensus_score=98.9	frequency=1	major_base=C	major_cov=21/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/17
RA	5796	.	1	1339437	0	C	A	consensus_score=105.7	frequency=1	major_base=A	major_cov=21/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/17
RA	5797	.	1	1339451	0	C	A	consensus_score=96.7	frequency=1	major_base=A	major_cov=21/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/17
RA	5798	.	1	1339452	0	C	A	consensus_score=96.6	frequency=1	major_base=A	major_cov=21/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/17
RA	5799	.	1	1339466	0	T	G	consensus_score=114.7	frequency=1	major_base=G	major_cov=23/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/18
RA	5800	.	1	1339498	0	C	T	consensus_score=104.3	frequency=1	major_base=T	major_cov=19/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/21
RA	5801	.	1	1339519	0	A	G	consensus_score=98.3	frequency=1	major_base=G	major_cov=17/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/18
RA	5802	.	1	1339526	0	T	C	consensus_score=91.7	frequency=1	major_base=C	major_cov=17/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/18
RA	5803	.	1	1339535	0	C	T	consensus_score=90.8	frequency=1	major_base=T	major_cov=17/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/18
RA	5804	.	1	1339548	0	T	A	consensus_score=94.8	frequency=1	major_base=A	major_cov=18/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/18
RA	5805	.	1	1339554	0	T	A	consensus_score=76.4	frequency=1	major_base=A	major_cov=13/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/16
RA	5806	.	1	1339557	0	A	C	consensus_score=75.3	frequency=1	major_base=C	major_cov=13/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/16
RA	5807	.	1	1339559	0	T	G	consensus_score=76.6	frequency=1	major_base=G	major_cov=13/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/16
RA	5808	.	1	1339563	0	T	C	consensus_score=79.5	frequency=1	major_base=C	major_cov=13/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/16
RA	5809	.	1	1339570	0	G	A	consensus_score=62.5	frequency=1	major_base=A	major_cov=10/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/15
RA	5810	.	1	1339572	0	T	C	consensus_score=67.8	frequency=1	major_base=C	major_cov=10/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/15
RA	5811	.	1	1339573	0	C	T	consensus_score=63.0	frequency=1	major_base=T	major_cov=10/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/15
RA	5812	.	1	1339606	0	G	A	consensus_score=63.7	deleted=1	frequency=1	major_base=A	major_cov=11/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/14
RA	5813	.	1	1339608	0	C	T	consensus_score=63.7	deleted=1	frequency=1	major_base=T	major_cov=11/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/14
RA	5814	.	1	1339635	0	C	T	consensus_score=41.7	deleted=1	frequency=1	major_base=T	major_cov=7/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/10
RA	5815	.	1	1339637	0	G	A	consensus_score=41.7	deleted=1	frequency=1	major_base=A	major_cov=7/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/10
RA	5816	.	1	1339638	0	T	C	consensus_score=42.1	deleted=1	frequency=1	major_base=C	major_cov=7/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/10
RA	5817	.	1	1339639	0	T	A	bias_e_value=1634340	bias_p_value=0.777125	consensus_score=38.4	deleted=1	fisher_strand_p_value=0.411765	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=6/10	major_frequency=9.412e-01	minor_base=C	minor_cov=1/0	new_cov=6/10	polymorphism_frequency=9.412e-01	polymorphism_score=-5.5	prediction=consensus	ref_cov=0/0	total_cov=7/10
RA	5818	.	1	1339651	0	A	G	consensus_score=35.1	deleted=1	frequency=1	major_base=G	major_cov=6/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/8
RA	5819	.	1	1339653	0	C	T	consensus_score=33.0	deleted=1	frequency=1	major_base=T	major_cov=6/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/8
RA	5820	.	1	1339665	0	A	.	consensus_score=36.9	deleted=1	frequency=1	major_base=.	major_cov=6/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/4
RA	5821	.	1	1339666	0	T	.	consensus_score=36.9	deleted=1	frequency=1	major_base=.	major_cov=6/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/4
RA	5822	.	1	1339667	0	A	.	consensus_score=36.9	deleted=1	frequency=1	major_base=.	major_cov=6/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/4
RA	5823	.	1	1339676	0	T	C	consensus_score=23.6	deleted=1	frequency=1	major_base=C	major_cov=6/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/4
RA	5824	.	1	1339691	0	G	C	consensus_score=23.3	deleted=1	frequency=1	major_base=C	major_cov=6/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/4
RA	5825	.	1	1339704	0	A	T	consensus_score=19.5	deleted=1	frequency=1	major_base=T	major_cov=5/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/4
RA	5826	.	1	1339705	0	G	C	consensus_score=20.5	deleted=1	frequency=1	major_base=C	major_cov=5/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/4
RA	5827	.	1	1339719	0	C	T	consensus_score=16.5	deleted=1	frequency=1	major_base=T	major_cov=5/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/3
RA	5828	.	1	1339723	0	G	A	consensus_score=13.3	deleted=1	frequency=1	major_base=A	major_cov=4/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/3
RA	5829	.	1	1339728	0	T	A	consensus_score=10.2	deleted=1	frequency=1	major_base=A	major_cov=3/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/3
RA	5830	.	1	1341173	0	A	C	consensus_score=319.3	frequency=1	major_base=C	major_cov=67/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=67/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/47
RA	5831	.	1	1341911	0	C	T	consensus_score=185.7	frequency=1	major_base=T	major_cov=25/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/46
RA	5832	.	1	1342042	0	T	G	consensus_score=129.3	frequency=1	major_base=G	major_cov=16/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/31
RA	5833	.	1	1342187	0	A	G	consensus_score=196.9	frequency=1	major_base=G	major_cov=36/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/34
RA	5834	.	1	1342424	0	A	C	consensus_score=196.6	frequency=1	major_base=C	major_cov=32/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/39
RA	5835	.	1	1342865	0	G	A	consensus_score=184.2	frequency=1	major_base=A	major_cov=32/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/37
RA	5836	.	1	1345718	0	A	G	consensus_score=218.5	frequency=1	major_base=G	major_cov=34/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/43
RA	5837	.	1	1347559	0	T	C	consensus_score=188.9	frequency=1	major_base=C	major_cov=41/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/27
RA	5838	.	1	1349659	0	G	A	consensus_score=185.4	frequency=1	major_base=A	major_cov=33/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/35
RA	5839	.	1	1350426	0	A	G	consensus_score=246.0	frequency=1	major_base=G	major_cov=43/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/43
RA	5840	.	1	1352030	0	A	G	consensus_score=204.1	frequency=1	major_base=G	major_cov=53/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/30
RA	5841	.	1	1352370	0	G	T	consensus_score=271.6	frequency=1	major_base=T	major_cov=48/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/51
RA	5842	.	1	1353377	0	G	A	consensus_score=191.0	frequency=1	major_base=A	major_cov=36/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/35
RA	5843	.	1	1354545	0	G	A	consensus_score=237.4	frequency=1	major_base=A	major_cov=50/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/33
RA	5844	.	1	1354693	0	C	T	consensus_score=273.8	frequency=1	major_base=T	major_cov=55/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/42
RA	5845	.	1	1357874	0	A	G	consensus_score=213.5	frequency=1	major_base=G	major_cov=36/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/38
RA	5846	.	1	1360714	0	T	C	consensus_score=117.2	frequency=1	major_base=C	major_cov=24/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/18
RA	5847	.	1	1364354	0	G	A	consensus_score=208.2	frequency=1	major_base=A	major_cov=36/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/38
RA	5848	.	1	1364373	0	A	G	consensus_score=228.8	frequency=1	major_base=G	major_cov=40/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/40
RA	5849	.	1	1365971	0	A	G	consensus_score=220.4	frequency=1	major_base=G	major_cov=42/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/38
RA	5850	.	1	1366073	0	C	T	consensus_score=237.5	frequency=1	major_base=T	major_cov=41/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/46
RA	5851	.	1	1369135	0	C	T	consensus_score=288.8	frequency=1	major_base=T	major_cov=52/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/53
RA	5852	.	1	1369150	0	A	C	consensus_score=278.2	frequency=1	major_base=C	major_cov=48/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/52
RA	5853	.	1	1369814	0	T	C	consensus_score=267.5	frequency=1	major_base=C	major_cov=38/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/57
RA	5854	.	1	1370639	0	A	C	consensus_score=226.0	frequency=1	major_base=C	major_cov=52/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/28
RA	5855	.	1	1370902	0	G	A	bias_e_value=1718630	bias_p_value=0.817203	consensus_score=284.7	fisher_strand_p_value=0.46	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=45/54	major_frequency=9.900e-01	minor_base=C	minor_cov=1/0	new_cov=45/54	polymorphism_frequency=9.900e-01	polymorphism_score=-5.5	prediction=consensus	ref_cov=0/0	total_cov=46/54
RA	5856	.	1	1370957	0	A	G	consensus_score=246.9	frequency=1	major_base=G	major_cov=45/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/44
RA	5857	.	1	1372742	0	C	T	consensus_score=212.7	frequency=1	major_base=T	major_cov=45/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/33
RA	5858	.	1	1372942	0	C	T	bias_e_value=1717620	bias_p_value=0.816725	consensus_score=302.9	fisher_strand_p_value=0.459459	frequency=1	ks_quality_p_value=0.999836	major_base=T	major_cov=60/50	major_frequency=9.910e-01	minor_base=G	minor_cov=0/1	new_cov=60/50	polymorphism_frequency=9.910e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/51
RA	5859	.	1	1374314	0	T	C	consensus_score=329.6	frequency=1	major_base=C	major_cov=59/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/59
RA	5860	.	1	1375542	0	G	C	consensus_score=335.6	frequency=1	major_base=C	major_cov=62/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/54
RA	5861	.	1	1378721	0	A	G	consensus_score=253.4	frequency=1	major_base=G	major_cov=45/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/42
RA	5862	.	1	1379100	0	A	C	consensus_score=138.1	frequency=1	major_base=C	major_cov=23/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/28
RA	5863	.	1	1379108	1	.	G	bias_e_value=1210830	bias_p_value=0.575746	consensus_score=134.9	fisher_strand_p_value=0.235294	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=23/26	major_frequency=9.608e-01	minor_base=.	minor_cov=2/0	new_cov=23/26	polymorphism_frequency=9.608e-01	polymorphism_score=-0.4	prediction=consensus	ref_cov=2/0	total_cov=25/26
RA	5864	.	1	1379606	0	G	A	bias_e_value=3.24442e-08	bias_p_value=1.54272e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=61.5	fisher_strand_p_value=4.24665e-16	frequency=3.951e-01	ks_quality_p_value=0.998096	major_base=G	major_cov=7/42	major_frequency=6.049e-01	minor_base=A	minor_cov=32/0	new_cov=32/0	polymorphism_frequency=3.951e-01	polymorphism_score=31.9	prediction=polymorphism	ref_cov=7/42	total_cov=39/42
RA	5865	.	1	1379935	0	A	G	consensus_score=233.1	frequency=1	major_base=G	major_cov=39/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/44
RA	5866	.	1	1380032	0	A	G	consensus_score=219.5	frequency=1	major_base=G	major_cov=37/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/42
RA	5867	.	1	1380147	0	T	C	consensus_score=229.8	frequency=1	major_base=C	major_cov=41/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/39
RA	5868	.	1	1380806	0	G	A	consensus_score=270.2	frequency=1	major_base=A	major_cov=62/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/34
RA	5869	.	1	1381318	0	G	A	bias_e_value=2103060	bias_p_value=1	consensus_score=276.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=56/41	major_frequency=9.898e-01	minor_base=C	minor_cov=1/0	new_cov=56/41	polymorphism_frequency=9.898e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/41
RA	5870	.	1	1384471	0	A	G	consensus_score=234.4	frequency=1	major_base=G	major_cov=48/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/38
RA	5871	.	1	1384871	0	G	A	bias_e_value=2103060	bias_p_value=1	consensus_score=308.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=51/57	major_frequency=9.908e-01	minor_base=T	minor_cov=0/1	new_cov=51/57	polymorphism_frequency=9.908e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/58
RA	5872	.	1	1385917	0	A	C	bias_e_value=1773130	bias_p_value=0.843119	consensus_score=284.7	fisher_strand_p_value=0.495146	frequency=1	ks_quality_p_value=0.99981	major_base=C	major_cov=52/50	major_frequency=9.903e-01	minor_base=T	minor_cov=0/1	new_cov=52/50	polymorphism_frequency=9.903e-01	polymorphism_score=-4.9	prediction=consensus	ref_cov=0/0	total_cov=52/51
RA	5873	.	1	1387346	0	C	T	consensus_score=203.0	frequency=1	major_base=T	major_cov=38/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/34
RA	5874	.	1	1391581	0	C	A	consensus_score=270.9	frequency=1	major_base=A	major_cov=55/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/44
RA	5875	.	1	1392473	0	G	.	consensus_score=424.3	frequency=1	major_base=.	major_cov=49/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/51
RA	5876	.	1	1393726	0	A	G	consensus_score=271.9	frequency=1	major_base=G	major_cov=35/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/60
RA	5877	.	1	1394843	0	C	T	consensus_score=317.9	frequency=1	major_base=T	major_cov=54/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/63
RA	5878	.	1	1395368	0	G	T	bias_e_value=2081800	bias_p_value=0.989894	consensus_score=213.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.861239	major_base=T	major_cov=41/39	major_frequency=9.877e-01	minor_base=.	minor_cov=1/0	new_cov=41/39	polymorphism_frequency=9.877e-01	polymorphism_score=-3.4	prediction=consensus	ref_cov=0/0	total_cov=42/39
RA	5879	.	1	1395448	0	A	G	consensus_score=202.2	frequency=1	major_base=G	major_cov=40/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/33
RA	5880	.	1	1395647	0	A	G	bias_e_value=2103060	bias_p_value=1	consensus_score=290.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.99982	major_base=G	major_cov=54/51	major_frequency=9.906e-01	minor_base=C	minor_cov=1/0	new_cov=54/51	polymorphism_frequency=9.906e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/51
RA	5881	.	1	1397498	0	A	G	consensus_score=265.0	frequency=1	major_base=G	major_cov=45/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/51
RA	5882	.	1	1399307	0	G	A	consensus_score=277.3	frequency=1	major_base=A	major_cov=53/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/49
RA	5883	.	1	1400108	0	C	T	consensus_score=312.1	frequency=1	major_base=T	major_cov=64/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/50
RA	5884	.	1	1401664	0	C	T	consensus_score=233.6	frequency=1	major_base=T	major_cov=38/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/44
RA	5885	.	1	1403050	0	C	T	consensus_score=250.5	frequency=1	major_base=T	major_cov=43/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/49
RA	5886	.	1	1407178	0	A	G	consensus_score=251.8	frequency=1	major_base=G	major_cov=27/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/60
RA	5887	.	1	1408686	0	C	A	bias_e_value=1732740	bias_p_value=0.823915	consensus_score=265.5	fisher_strand_p_value=0.46875	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=44/51	major_frequency=9.896e-01	minor_base=C	minor_cov=1/0	new_cov=44/51	polymorphism_frequency=9.896e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=45/51
RA	5888	.	1	1410019	0	G	T	consensus_score=244.1	frequency=1	major_base=T	major_cov=45/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/45
RA	5889	.	1	1410779	0	C	T	consensus_score=133.5	frequency=1	major_base=T	major_cov=27/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/21
RA	5890	.	1	1410952	0	G	A	consensus_score=188.6	frequency=1	major_base=A	major_cov=41/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/30
RA	5891	.	1	1413004	0	C	T	consensus_score=137.4	frequency=1	major_base=T	major_cov=30/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/21
RA	5892	.	1	1413541	0	G	T	consensus_score=205.2	frequency=1	major_base=T	major_cov=49/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/28
RA	5893	.	1	1413592	0	A	G	consensus_score=259.0	frequency=1	major_base=G	major_cov=55/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/35
RA	5894	.	1	1413738	0	A	C	consensus_score=283.0	frequency=1	major_base=C	major_cov=51/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/50
RA	5895	.	1	1416057	0	T	C	consensus_score=259.9	frequency=1	major_base=C	major_cov=41/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/52
RA	5896	.	1	1416676	0	A	C	consensus_score=96.2	frequency=1	major_base=C	major_cov=16/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/19
RA	5897	.	1	1417992	1	.	A	consensus_score=208.2	frequency=1	major_base=A	major_cov=28/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/48
RA	5898	.	1	1418196	0	G	C	consensus_score=212.9	frequency=1	major_base=C	major_cov=35/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/39
RA	5899	.	1	1420271	0	G	A	consensus_score=233.2	frequency=1	major_base=A	major_cov=34/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/48
RA	5900	.	1	1420483	0	C	T	consensus_score=188.6	frequency=1	major_base=T	major_cov=30/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/41
RA	5901	.	1	1420584	0	A	G	consensus_score=207.6	frequency=1	major_base=G	major_cov=29/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/43
RA	5902	.	1	1421960	0	T	C	consensus_score=222.2	frequency=1	major_base=C	major_cov=41/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/39
RA	5903	.	1	1422354	0	A	G	consensus_score=231.3	frequency=1	major_base=G	major_cov=42/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/42
RA	5904	.	1	1423466	0	G	A	consensus_score=263.8	frequency=1	major_base=A	major_cov=47/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/50
RA	5905	.	1	1423932	0	C	A	consensus_score=249.3	frequency=1	major_base=A	major_cov=44/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/43
RA	5906	.	1	1424513	0	C	T	consensus_score=260.0	frequency=1	major_base=T	major_cov=37/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/59
RA	5907	.	1	1426031	0	C	T	consensus_score=258.5	frequency=1	major_base=T	major_cov=40/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/55
RA	5908	.	1	1427522	0	G	A	consensus_score=249.5	frequency=1	major_base=A	major_cov=50/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/42
RA	5909	.	1	1428153	0	G	A	consensus_score=362.9	frequency=1	major_base=A	major_cov=63/69	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/69	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/69
RA	5910	.	1	1429326	0	T	C	consensus_score=315.0	frequency=1	major_base=C	major_cov=61/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/51
RA	5911	.	1	1429711	0	A	C	bias_e_value=0.0110056	bias_p_value=5.23316e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=120.7	fisher_strand_p_value=2.25441e-10	frequency=3.143e-01	ks_quality_p_value=1	major_base=A	major_cov=37/11	major_frequency=6.857e-01	minor_base=C	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=3.143e-01	polymorphism_score=11.5	prediction=polymorphism	ref_cov=37/11	total_cov=37/33
RA	5912	.	1	1429740	0	T	C	bias_e_value=0.00641588	bias_p_value=3.05074e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=85.7	fisher_strand_p_value=1.28309e-10	frequency=2.879e-01	ks_quality_p_value=1	major_base=T	major_cov=39/8	major_frequency=7.121e-01	minor_base=C	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=2.879e-01	polymorphism_score=14.4	prediction=polymorphism	ref_cov=39/8	total_cov=39/27
RA	5913	.	1	1430138	0	A	G	consensus_score=339.3	frequency=1	major_base=G	major_cov=63/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/67
RA	5914	.	1	1431219	0	G	A	consensus_score=237.4	frequency=1	major_base=A	major_cov=44/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/39
RA	5915	.	1	1432681	0	C	T	consensus_score=269.3	frequency=1	major_base=T	major_cov=49/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/49
RA	5916	.	1	1433102	0	A	G	consensus_score=131.2	frequency=1	major_base=G	major_cov=25/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/21
RA	5917	.	1	1433295	0	G	A	bias_e_value=2103060	bias_p_value=1	consensus_score=282.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999813	major_base=A	major_cov=52/51	major_frequency=9.904e-01	minor_base=C	minor_cov=1/0	new_cov=52/51	polymorphism_frequency=9.904e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/51
RA	5918	.	1	1433897	0	G	A	consensus_score=249.9	frequency=1	major_base=A	major_cov=41/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/50
RA	5919	.	1	1434157	0	A	G	consensus_score=264.1	frequency=1	major_base=G	major_cov=40/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/54
RA	5920	.	1	1435561	0	C	T	consensus_score=175.2	frequency=1	major_base=T	major_cov=35/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/29
RA	5921	.	1	1436365	0	T	C	consensus_score=243.2	frequency=1	major_base=C	major_cov=44/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/45
RA	5922	.	1	1437564	0	A	G	consensus_score=318.6	frequency=1	major_base=G	major_cov=56/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/55
RA	5923	.	1	1437906	0	C	T	consensus_score=311.5	frequency=1	major_base=T	major_cov=51/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/64
RA	5924	.	1	1438254	0	C	G	consensus_score=166.9	frequency=1	major_base=G	major_cov=32/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/29
RA	5925	.	1	1439413	0	A	G	consensus_score=271.9	frequency=1	major_base=G	major_cov=52/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/42
RA	5926	.	1	1439495	0	A	G	consensus_score=278.2	frequency=1	major_base=G	major_cov=50/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/46
RA	5927	.	1	1440803	0	C	T	consensus_score=190.7	frequency=1	major_base=T	major_cov=42/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/28
RA	5928	.	1	1441127	0	A	C	consensus_score=248.6	frequency=1	major_base=C	major_cov=35/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/50
RA	5929	.	1	1441483	0	G	A	consensus_score=271.6	frequency=1	major_base=A	major_cov=56/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/39
RA	5930	.	1	1442320	0	T	C	consensus_score=264.8	frequency=1	major_base=C	major_cov=45/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/51
RA	5931	.	1	1442686	0	T	C	consensus_score=241.6	frequency=1	major_base=C	major_cov=37/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/50
RA	5932	.	1	1444202	0	G	A	consensus_score=178.4	frequency=1	major_base=A	major_cov=20/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/44
RA	5933	.	1	1444652	0	G	A	consensus_score=230.7	frequency=1	major_base=A	major_cov=36/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/48
RA	5934	.	1	1444912	0	G	A	consensus_score=245.2	frequency=1	major_base=A	major_cov=51/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/38
RA	5935	.	1	1444949	0	T	C	consensus_score=235.0	frequency=1	major_base=C	major_cov=43/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/41
RA	5936	.	1	1445032	0	T	C	consensus_score=251.9	frequency=1	major_base=C	major_cov=43/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/49
RA	5937	.	1	1446991	0	G	A	consensus_score=302.4	frequency=1	major_base=A	major_cov=63/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/43
RA	5938	.	1	1447188	0	T	C	consensus_score=267.3	frequency=1	major_base=C	major_cov=49/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/43
RA	5939	.	1	1447221	0	A	C	consensus_score=249.7	frequency=1	major_base=C	major_cov=50/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/41
RA	5940	.	1	1447392	0	A	G	consensus_score=318.5	frequency=1	major_base=G	major_cov=64/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/50
RA	5941	.	1	1448570	0	T	A	bias_e_value=0.0233796	bias_p_value=1.11169e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=171.7	fisher_strand_p_value=4.9574e-10	frequency=2.143e-01	ks_quality_p_value=1	major_base=T	major_cov=52/14	major_frequency=7.857e-01	minor_base=A	minor_cov=0/18	new_cov=0/18	polymorphism_frequency=2.143e-01	polymorphism_score=12.1	prediction=polymorphism	ref_cov=52/14	total_cov=52/32
RA	5942	.	1	1448584	0	C	T	bias_e_value=0.00027533	bias_p_value=1.30919e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=133.0	fisher_strand_p_value=4.83912e-12	frequency=2.439e-01	ks_quality_p_value=1	major_base=C	major_cov=52/10	major_frequency=7.561e-01	minor_base=T	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.439e-01	polymorphism_score=13.5	prediction=polymorphism	ref_cov=52/10	total_cov=52/30
RA	5943	.	1	1450781	0	G	A	consensus_score=313.4	frequency=1	major_base=A	major_cov=63/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/52
RA	5944	.	1	1451303	0	T	C	consensus_score=278.6	frequency=1	major_base=C	major_cov=53/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/47
RA	5945	.	1	1454284	0	T	G	consensus_score=267.5	frequency=1	major_base=G	major_cov=45/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/50
RA	5946	.	1	1454763	0	G	A	consensus_score=284.6	frequency=1	major_base=A	major_cov=44/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/59
RA	5947	.	1	1454975	0	C	A	consensus_score=258.1	frequency=1	major_base=A	major_cov=46/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/48
RA	5948	.	1	1455431	0	A	T	consensus_score=319.8	frequency=1	major_base=T	major_cov=60/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/52
RA	5949	.	1	1455464	0	T	C	consensus_score=272.0	frequency=1	major_base=C	major_cov=52/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/45
RA	5950	.	1	1455478	0	C	T	consensus_score=270.2	frequency=1	major_base=T	major_cov=52/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/47
RA	5951	.	1	1456669	0	T	G	bias_e_value=1523540	bias_p_value=0.724442	consensus_score=226.1	fisher_strand_p_value=0.357143	frequency=1	ks_quality_p_value=0.998853	major_base=G	major_cov=54/29	major_frequency=9.881e-01	minor_base=A	minor_cov=0/1	new_cov=54/29	polymorphism_frequency=9.881e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/30
RA	5952	.	1	1460414	0	T	G	consensus_score=282.3	frequency=1	major_base=G	major_cov=43/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/56
RA	5953	.	1	1464161	1	.	A	bias_e_value=1680100	bias_p_value=0.798884	consensus_score=275.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.437152	major_base=A	major_cov=48/51	major_frequency=9.900e-01	minor_base=.	minor_cov=0/1	new_cov=48/51	polymorphism_frequency=9.900e-01	polymorphism_score=-3.5	prediction=consensus	ref_cov=0/1	total_cov=48/52
RA	5954	.	1	1466355	0	G	A	consensus_score=364.4	frequency=1	major_base=A	major_cov=60/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/66
RA	5955	.	1	1466988	0	G	A	consensus_score=316.0	frequency=1	major_base=A	major_cov=54/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/57
RA	5956	.	1	1467095	0	G	C	consensus_score=322.2	frequency=1	major_base=C	major_cov=53/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/57
RA	5957	.	1	1467580	0	A	G	consensus_score=289.3	frequency=1	major_base=G	major_cov=43/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/60
RA	5958	.	1	1470824	0	G	A	consensus_score=200.6	frequency=1	major_base=A	major_cov=46/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/28
RA	5959	.	1	1471952	0	G	T	consensus_score=249.6	frequency=1	major_base=T	major_cov=44/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/49
RA	5960	.	1	1472603	0	T	G	consensus_score=204.9	frequency=1	major_base=G	major_cov=33/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/39
RA	5961	.	1	1472624	0	G	A	consensus_score=195.1	frequency=1	major_base=A	major_cov=30/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/39
RA	5962	.	1	1472845	0	A	G	bias_e_value=1661480	bias_p_value=0.790032	consensus_score=236.6	fisher_strand_p_value=0.428571	frequency=1	ks_quality_p_value=0.995421	major_base=G	major_cov=35/48	major_frequency=9.881e-01	minor_base=A	minor_cov=1/0	new_cov=35/48	polymorphism_frequency=9.881e-01	polymorphism_score=-4.9	prediction=consensus	ref_cov=1/0	total_cov=36/48
RA	5963	.	1	1473034	0	T	C	bias_e_value=1734010	bias_p_value=0.824519	consensus_score=212.1	fisher_strand_p_value=0.473684	frequency=1	ks_quality_p_value=0.991266	major_base=C	major_cov=35/40	major_frequency=9.868e-01	minor_base=T	minor_cov=1/0	new_cov=35/40	polymorphism_frequency=9.868e-01	polymorphism_score=-5.1	prediction=consensus	ref_cov=1/0	total_cov=36/40
RA	5964	.	1	1473043	0	T	C	bias_e_value=1735670	bias_p_value=0.82531	consensus_score=202.1	fisher_strand_p_value=0.479452	frequency=1	ks_quality_p_value=0.981527	major_base=C	major_cov=34/38	major_frequency=9.863e-01	minor_base=T	minor_cov=1/0	new_cov=34/38	polymorphism_frequency=9.863e-01	polymorphism_score=-5.1	prediction=consensus	ref_cov=1/0	total_cov=35/38
RA	5965	.	1	1473136	0	G	A	bias_e_value=1349570	bias_p_value=0.641718	consensus_score=196.5	fisher_strand_p_value=0.453333	frequency=1	ks_quality_p_value=0.626863	major_base=A	major_cov=41/33	major_frequency=9.867e-01	minor_base=G	minor_cov=0/1	new_cov=41/33	polymorphism_frequency=9.867e-01	polymorphism_score=-5.0	prediction=consensus	ref_cov=0/1	total_cov=41/34
RA	5966	.	1	1473297	0	T	C	consensus_score=293.6	frequency=1	major_base=C	major_cov=59/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/45
RA	5967	.	1	1473305	0	G	T	consensus_score=286.9	frequency=1	major_base=T	major_cov=59/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/46
RA	5968	.	1	1473316	0	C	T	consensus_score=285.4	frequency=1	major_base=T	major_cov=58/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/45
RA	5969	.	1	1473317	0	G	T	consensus_score=283.5	frequency=1	major_base=T	major_cov=58/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/45
RA	5970	.	1	1473363	0	G	A	consensus_score=248.2	frequency=1	major_base=A	major_cov=49/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/42
RA	5971	.	1	1473367	0	G	A	consensus_score=244.1	frequency=1	major_base=A	major_cov=49/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/40
RA	5972	.	1	1473409	0	A	G	consensus_score=249.9	frequency=1	major_base=G	major_cov=48/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/45
RA	5973	.	1	1473446	0	G	A	consensus_score=210.3	frequency=1	major_base=A	major_cov=40/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/38
RA	5974	.	1	1473512	0	A	G	consensus_score=197.2	frequency=1	major_base=G	major_cov=33/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/38
RA	5975	.	1	1473517	0	C	A	consensus_score=190.3	frequency=1	major_base=A	major_cov=32/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/38
RA	5976	.	1	1473535	0	G	A	consensus_score=180.1	frequency=1	major_base=A	major_cov=32/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/35
RA	5977	.	1	1473538	0	G	A	consensus_score=182.7	frequency=1	major_base=A	major_cov=32/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/35
RA	5978	.	1	1473591	0	G	A	consensus_score=132.1	frequency=1	major_base=A	major_cov=24/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/27
RA	5979	.	1	1473600	0	T	C	consensus_score=139.5	frequency=1	major_base=C	major_cov=26/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/29
RA	5980	.	1	1473641	0	T	.	consensus_score=133.9	frequency=1	major_base=.	major_cov=21/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/22
RA	5981	.	1	1473702	0	G	A	consensus_score=135.3	frequency=1	major_base=A	major_cov=31/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/29
RA	5982	.	1	1473824	0	G	T	consensus_score=145.4	frequency=1	major_base=T	major_cov=38/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/29
RA	5983	.	1	1473831	0	C	T	consensus_score=134.5	frequency=1	major_base=T	major_cov=35/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/28
RA	5984	.	1	1473832	0	C	G	consensus_score=136.7	frequency=1	major_base=G	major_cov=35/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/28
RA	5985	.	1	1473836	0	C	A	consensus_score=132.7	frequency=1	major_base=A	major_cov=35/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/28
RA	5986	.	1	1473868	0	A	G	consensus_score=130.7	frequency=1	major_base=G	major_cov=34/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/24
RA	5987	.	1	1473874	0	A	G	consensus_score=133.3	frequency=1	major_base=G	major_cov=33/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/25
RA	5988	.	1	1473932	0	T	G	consensus_score=141.2	frequency=1	major_base=G	major_cov=34/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/20
RA	5989	.	1	1473936	0	C	T	consensus_score=144.3	frequency=1	major_base=T	major_cov=34/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/20
RA	5990	.	1	1473958	0	C	T	consensus_score=161.8	frequency=1	major_base=T	major_cov=40/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/20
RA	5991	.	1	1473974	0	C	T	consensus_score=174.7	frequency=1	major_base=T	major_cov=42/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/22
RA	5992	.	1	1473983	0	G	A	consensus_score=164.0	frequency=1	major_base=A	major_cov=41/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/22
RA	5993	.	1	1473992	0	A	G	consensus_score=173.8	frequency=1	major_base=G	major_cov=42/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/20
RA	5994	.	1	1473995	0	A	G	consensus_score=167.9	frequency=1	major_base=G	major_cov=42/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/20
RA	5995	.	1	1474010	0	T	C	consensus_score=175.3	frequency=1	major_base=C	major_cov=41/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/23
RA	5996	.	1	1474019	0	T	C	consensus_score=174.5	frequency=1	major_base=C	major_cov=40/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/24
RA	5997	.	1	1474040	0	G	A	consensus_score=156.4	frequency=1	major_base=A	major_cov=37/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/22
RA	5998	.	1	1474043	0	T	G	consensus_score=162.3	frequency=1	major_base=G	major_cov=37/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/22
RA	5999	.	1	1474067	0	C	G	consensus_score=200.2	frequency=1	major_base=G	major_cov=44/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/26
RA	6000	.	1	1474100	0	G	A	consensus_score=206.3	frequency=1	major_base=A	major_cov=43/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/33
RA	6001	.	1	1474111	0	C	T	consensus_score=196.4	frequency=1	major_base=T	major_cov=40/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/32
RA	6002	.	1	1474116	0	G	T	consensus_score=196.5	frequency=1	major_base=T	major_cov=40/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/32
RA	6003	.	1	1474131	1	.	A	consensus_score=209.3	frequency=1	major_base=A	major_cov=43/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/30
RA	6004	.	1	1474144	0	C	T	consensus_score=200.2	frequency=1	major_base=T	major_cov=42/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/32
RA	6005	.	1	1474164	0	G	A	consensus_score=189.2	frequency=1	major_base=A	major_cov=39/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/31
RA	6006	.	1	1474210	0	T	G	consensus_score=187.3	frequency=1	major_base=G	major_cov=33/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/33
RA	6007	.	1	1474211	0	T	C	consensus_score=178.6	frequency=1	major_base=C	major_cov=33/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/33
RA	6008	.	1	1474214	0	G	A	bias_e_value=1769050	bias_p_value=0.841182	consensus_score=170.7	fisher_strand_p_value=0.492308	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=33/31	major_frequency=9.697e-01	minor_base=G	minor_cov=0/2	new_cov=33/31	polymorphism_frequency=9.697e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/2	total_cov=33/33
RA	6009	.	1	1474229	0	G	T	consensus_score=189.7	frequency=1	major_base=T	major_cov=37/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/33
RA	6010	.	1	1474245	0	G	A	consensus_score=204.1	frequency=1	major_base=A	major_cov=40/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/35
RA	6011	.	1	1474248	0	T	C	consensus_score=211.9	frequency=1	major_base=C	major_cov=40/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/35
RA	6012	.	1	1474262	0	T	C	consensus_score=214.0	frequency=1	major_base=C	major_cov=46/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/30
RA	6013	.	1	1474279	0	C	T	consensus_score=198.5	frequency=1	major_base=T	major_cov=43/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/30
RA	6014	.	1	1474281	0	C	T	consensus_score=205.6	frequency=1	major_base=T	major_cov=43/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/30
RA	6015	.	1	1474292	0	A	C	consensus_score=220.0	frequency=1	major_base=C	major_cov=44/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/33
RA	6016	.	1	1474321	0	G	A	consensus_score=179.0	frequency=1	major_base=A	major_cov=39/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/28
RA	6017	.	1	1474335	0	C	T	consensus_score=173.0	frequency=1	major_base=T	major_cov=37/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/27
RA	6018	.	1	1474362	0	G	A	consensus_score=160.3	frequency=1	major_base=A	major_cov=38/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/24
RA	6019	.	1	1474364	0	A	C	consensus_score=166.0	frequency=1	major_base=C	major_cov=38/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/24
RA	6020	.	1	1474370	0	A	G	consensus_score=161.3	frequency=1	major_base=G	major_cov=36/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/24
RA	6021	.	1	1474371	0	A	G	consensus_score=162.2	frequency=1	major_base=G	major_cov=36/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/24
RA	6022	.	1	1474376	0	T	C	consensus_score=190.4	frequency=1	major_base=C	major_cov=37/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/31
RA	6023	.	1	1474402	0	G	C	consensus_score=188.4	frequency=1	major_base=C	major_cov=38/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/30
RA	6024	.	1	1474408	0	A	G	consensus_score=188.5	frequency=1	major_base=G	major_cov=38/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/31
RA	6025	.	1	1474416	0	C	T	consensus_score=204.5	frequency=1	major_base=T	major_cov=40/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/33
RA	6026	.	1	1474434	0	C	T	consensus_score=186.0	frequency=1	major_base=T	major_cov=32/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/36
RA	6027	.	1	1474445	0	G	A	consensus_score=193.0	frequency=1	major_base=A	major_cov=35/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/33
RA	6028	.	1	1474449	0	A	G	consensus_score=194.1	frequency=1	major_base=G	major_cov=35/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/33
RA	6029	.	1	1474464	0	C	T	consensus_score=195.5	frequency=1	major_base=T	major_cov=34/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/35
RA	6030	.	1	1474471	0	T	C	consensus_score=191.4	frequency=1	major_base=C	major_cov=33/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/36
RA	6031	.	1	1474488	0	T	C	consensus_score=154.2	frequency=1	major_base=C	major_cov=26/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/31
RA	6032	.	1	1474492	0	C	T	consensus_score=160.3	frequency=1	major_base=T	major_cov=26/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/33
RA	6033	.	1	1474500	0	C	T	consensus_score=162.0	frequency=1	major_base=T	major_cov=23/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/34
RA	6034	.	1	1474506	0	G	A	consensus_score=166.2	frequency=1	major_base=A	major_cov=23/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/37
RA	6035	.	1	1474512	0	T	C	consensus_score=166.4	frequency=1	major_base=C	major_cov=23/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/38
RA	6036	.	1	1474518	0	T	C	consensus_score=163.5	frequency=1	major_base=C	major_cov=22/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/37
RA	6037	.	1	1474539	0	T	C	consensus_score=144.9	frequency=1	major_base=C	major_cov=20/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/33
RA	6038	.	1	1474550	0	C	T	consensus_score=153.2	frequency=1	major_base=T	major_cov=20/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/34
RA	6039	.	1	1474596	0	C	G	consensus_score=144.9	frequency=1	major_base=G	major_cov=18/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/34
RA	6040	.	1	1474602	0	C	T	consensus_score=149.1	frequency=1	major_base=T	major_cov=18/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/34
RA	6041	.	1	1474632	0	G	A	consensus_score=159.2	frequency=1	major_base=A	major_cov=25/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/34
RA	6042	.	1	1474658	0	C	.	consensus_score=263.5	frequency=1	major_base=.	major_cov=27/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/36
RA	6043	.	1	1474660	1	.	T	bias_e_value=2103060	bias_p_value=1	consensus_score=174.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=27/35	major_frequency=9.841e-01	minor_base=G	minor_cov=0/1	new_cov=27/35	polymorphism_frequency=9.841e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/36
RA	6044	.	1	1474683	0	T	C	consensus_score=168.7	frequency=1	major_base=C	major_cov=26/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/35
RA	6045	.	1	1474686	0	C	T	consensus_score=170.1	frequency=1	major_base=T	major_cov=26/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/35
RA	6046	.	1	1474704	0	T	C	consensus_score=176.7	frequency=1	major_base=C	major_cov=28/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/35
RA	6047	.	1	1474730	0	G	A	consensus_score=186.5	frequency=1	major_base=A	major_cov=29/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/37
RA	6048	.	1	1474731	0	T	A	consensus_score=182.8	frequency=1	major_base=A	major_cov=29/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/37
RA	6049	.	1	1474794	0	A	G	consensus_score=190.5	frequency=1	major_base=G	major_cov=35/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/33
RA	6050	.	1	1474797	0	A	G	consensus_score=185.4	frequency=1	major_base=G	major_cov=35/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/33
RA	6051	.	1	1474800	0	T	C	consensus_score=192.5	frequency=1	major_base=C	major_cov=35/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/33
RA	6052	.	1	1474801	0	G	A	consensus_score=194.3	frequency=1	major_base=A	major_cov=35/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/33
RA	6053	.	1	1474803	0	A	G	consensus_score=183.3	frequency=1	major_base=G	major_cov=35/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/33
RA	6054	.	1	1474818	0	C	T	bias_e_value=2103060	bias_p_value=1	consensus_score=186.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=36/33	major_frequency=9.857e-01	minor_base=C	minor_cov=1/0	new_cov=36/33	polymorphism_frequency=9.857e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=37/33
RA	6055	.	1	1474826	0	T	G	consensus_score=204.7	frequency=1	major_base=G	major_cov=36/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/37
RA	6056	.	1	1474839	0	G	A	consensus_score=151.2	frequency=1	major_base=A	major_cov=24/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/32
RA	6057	.	1	1474842	0	G	A	consensus_score=149.9	frequency=1	major_base=A	major_cov=24/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/32
RA	6058	.	1	1474845	0	A	C	consensus_score=154.0	frequency=1	major_base=C	major_cov=24/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/32
RA	6059	.	1	1474846	0	C	T	consensus_score=150.6	frequency=1	major_base=T	major_cov=24/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/32
RA	6060	.	1	1474852	0	T	C	consensus_score=154.5	frequency=1	major_base=C	major_cov=24/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/32
RA	6061	.	1	1474853	0	T	C	consensus_score=158.2	frequency=1	major_base=C	major_cov=24/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/32
RA	6062	.	1	1474854	0	G	T	consensus_score=151.6	frequency=1	major_base=T	major_cov=24/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/32
RA	6063	.	1	1474857	0	C	T	consensus_score=150.6	frequency=1	major_base=T	major_cov=24/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/32
RA	6064	.	1	1474878	0	A	G	consensus_score=171.4	frequency=1	major_base=G	major_cov=33/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/27
RA	6065	.	1	1474886	0	A	G	consensus_score=144.0	frequency=1	major_base=G	major_cov=29/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/22
RA	6066	.	1	1474889	0	C	T	consensus_score=137.1	frequency=1	major_base=T	major_cov=29/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/22
RA	6067	.	1	1474890	0	C	T	consensus_score=142.3	frequency=1	major_base=T	major_cov=29/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/22
RA	6068	.	1	1474894	0	T	C	consensus_score=139.7	frequency=1	major_base=C	major_cov=29/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/22
RA	6069	.	1	1474899	0	C	T	consensus_score=137.7	frequency=1	major_base=T	major_cov=29/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/22
RA	6070	.	1	1474902	0	C	T	consensus_score=134.8	frequency=1	major_base=T	major_cov=29/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/22
RA	6071	.	1	1474907	0	G	A	consensus_score=139.4	frequency=1	major_base=A	major_cov=31/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/22
RA	6072	.	1	1474926	0	C	T	consensus_score=145.2	frequency=1	major_base=T	major_cov=28/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/27
RA	6073	.	1	1474962	0	T	G	consensus_score=163.3	frequency=1	major_base=G	major_cov=32/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/26
RA	6074	.	1	1474977	0	G	A	consensus_score=155.7	frequency=1	major_base=A	major_cov=35/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/23
RA	6075	.	1	1475009	0	A	T	consensus_score=173.0	frequency=1	major_base=T	major_cov=36/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/26
RA	6076	.	1	1475020	0	T	C	consensus_score=204.1	frequency=1	major_base=C	major_cov=42/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/31
RA	6077	.	1	1475027	0	C	T	consensus_score=191.1	frequency=1	major_base=T	major_cov=40/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/30
RA	6078	.	1	1475048	0	T	C	consensus_score=192.5	frequency=1	major_base=C	major_cov=38/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/31
RA	6079	.	1	1475058	0	G	A	consensus_score=180.0	frequency=1	major_base=A	major_cov=36/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/30
RA	6080	.	1	1475061	0	A	G	consensus_score=184.0	frequency=1	major_base=G	major_cov=36/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/30
RA	6081	.	1	1475064	0	G	A	consensus_score=186.8	frequency=1	major_base=A	major_cov=36/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/30
RA	6082	.	1	1475069	0	G	A	consensus_score=208.2	frequency=1	major_base=A	major_cov=40/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/37
RA	6083	.	1	1475078	0	T	G	consensus_score=224.2	frequency=1	major_base=G	major_cov=41/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/39
RA	6084	.	1	1475112	0	A	G	consensus_score=223.7	frequency=1	major_base=G	major_cov=40/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/40
RA	6085	.	1	1475153	0	A	G	consensus_score=232.8	frequency=1	major_base=G	major_cov=42/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/41
RA	6086	.	1	1475178	0	C	A	consensus_score=237.0	frequency=1	major_base=A	major_cov=44/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/39
RA	6087	.	1	1475193	0	T	G	consensus_score=234.3	frequency=1	major_base=G	major_cov=44/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/41
RA	6088	.	1	1475198	0	T	C	consensus_score=223.0	frequency=1	major_base=C	major_cov=40/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/39
RA	6089	.	1	1475199	0	C	T	consensus_score=218.8	frequency=1	major_base=T	major_cov=40/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/39
RA	6090	.	1	1475229	0	G	A	consensus_score=188.3	frequency=1	major_base=A	major_cov=32/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/36
RA	6091	.	1	1475232	0	T	C	consensus_score=188.2	frequency=1	major_base=C	major_cov=32/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/36
RA	6092	.	1	1475238	0	G	A	consensus_score=177.6	frequency=1	major_base=A	major_cov=31/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/35
RA	6093	.	1	1475250	0	G	C	consensus_score=164.3	frequency=1	major_base=C	major_cov=28/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/32
RA	6094	.	1	1475253	0	C	G	consensus_score=166.3	frequency=1	major_base=G	major_cov=28/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/32
RA	6095	.	1	1475265	0	A	G	consensus_score=147.7	frequency=1	major_base=G	major_cov=26/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/26
RA	6096	.	1	1475275	0	G	A	consensus_score=130.1	frequency=1	major_base=A	major_cov=26/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/24
RA	6097	.	1	1475277	0	A	G	consensus_score=134.3	frequency=1	major_base=G	major_cov=26/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/24
RA	6098	.	1	1475279	0	T	C	consensus_score=140.7	frequency=1	major_base=C	major_cov=26/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/24
RA	6099	.	1	1475280	0	C	A	consensus_score=139.1	frequency=1	major_base=A	major_cov=26/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/24
RA	6100	.	1	1475287	0	T	G	consensus_score=141.7	frequency=1	major_base=G	major_cov=26/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/24
RA	6101	.	1	1475307	0	A	G	consensus_score=99.0	frequency=1	major_base=G	major_cov=23/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/15
RA	6102	.	1	1475322	0	G	A	consensus_score=95.6	frequency=1	major_base=A	major_cov=21/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/15
RA	6103	.	1	1475337	0	C	T	consensus_score=84.6	frequency=1	major_base=T	major_cov=19/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/13
RA	6104	.	1	1475338	0	G	A	consensus_score=84.9	frequency=1	major_base=A	major_cov=19/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/13
RA	6105	.	1	1475355	0	T	C	consensus_score=89.4	frequency=1	major_base=C	major_cov=18/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/15
RA	6106	.	1	1475369	0	C	T	consensus_score=78.5	frequency=1	major_base=T	major_cov=15/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/15
RA	6107	.	1	1475374	0	T	C	consensus_score=74.0	frequency=1	major_base=C	major_cov=14/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/14
RA	6108	.	1	1475376	0	G	A	consensus_score=75.0	frequency=1	major_base=A	major_cov=14/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/14
RA	6109	.	1	1475391	0	T	C	consensus_score=73.1	frequency=1	major_base=C	major_cov=10/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/18
RA	6110	.	1	1475393	0	G	A	consensus_score=74.9	frequency=1	major_base=A	major_cov=10/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/18
RA	6111	.	1	1475394	0	C	T	consensus_score=73.1	frequency=1	major_base=T	major_cov=10/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/18
RA	6112	.	1	1475400	0	G	C	consensus_score=77.7	frequency=1	major_base=C	major_cov=10/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/19
RA	6113	.	1	1475409	0	G	C	consensus_score=77.5	frequency=1	major_base=C	major_cov=10/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/19
RA	6114	.	1	1475410	0	A	G	consensus_score=77.3	frequency=1	major_base=G	major_cov=10/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/19
RA	6115	.	1	1475413	0	C	G	consensus_score=77.2	frequency=1	major_base=G	major_cov=10/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/19
RA	6116	.	1	1475417	0	A	C	consensus_score=77.4	frequency=1	major_base=C	major_cov=10/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/19
RA	6117	.	1	1475433	0	C	A	consensus_score=95.5	frequency=1	major_base=A	major_cov=15/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/21
RA	6118	.	1	1475452	0	G	A	consensus_score=72.2	frequency=1	major_base=A	major_cov=13/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/15
RA	6119	.	1	1475469	0	G	A	consensus_score=108.7	frequency=1	major_base=A	major_cov=20/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/21
RA	6120	.	1	1475474	0	T	G	consensus_score=114.7	frequency=1	major_base=G	major_cov=20/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/21
RA	6121	.	1	1475481	0	C	T	consensus_score=110.5	frequency=1	major_base=T	major_cov=20/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/21
RA	6122	.	1	1475482	0	G	T	consensus_score=110.1	frequency=1	major_base=T	major_cov=20/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/21
RA	6123	.	1	1475484	0	T	C	consensus_score=113.6	frequency=1	major_base=C	major_cov=20/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/21
RA	6124	.	1	1475493	0	T	C	consensus_score=129.3	frequency=1	major_base=C	major_cov=24/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/22
RA	6125	.	1	1475508	0	C	T	consensus_score=136.1	frequency=1	major_base=T	major_cov=27/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/24
RA	6126	.	1	1475523	0	T	G	consensus_score=158.3	frequency=1	major_base=G	major_cov=31/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/25
RA	6127	.	1	1475532	0	G	A	consensus_score=159.1	frequency=1	major_base=A	major_cov=31/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/25
RA	6128	.	1	1475559	0	C	T	consensus_score=158.9	frequency=1	major_base=T	major_cov=33/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/26
RA	6129	.	1	1475562	0	G	A	consensus_score=159.8	frequency=1	major_base=A	major_cov=33/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/26
RA	6130	.	1	1475563	0	T	C	consensus_score=163.4	frequency=1	major_base=C	major_cov=33/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/26
RA	6131	.	1	1475565	0	A	G	consensus_score=161.5	frequency=1	major_base=G	major_cov=33/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/26
RA	6132	.	1	1475594	0	C	T	consensus_score=188.6	frequency=1	major_base=T	major_cov=39/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/30
RA	6133	.	1	1475613	0	G	A	consensus_score=203.5	frequency=1	major_base=A	major_cov=40/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/35
RA	6134	.	1	1475617	0	T	A	consensus_score=196.8	frequency=1	major_base=A	major_cov=39/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/35
RA	6135	.	1	1475632	0	T	G	consensus_score=208.7	frequency=1	major_base=G	major_cov=37/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/38
RA	6136	.	1	1475641	0	T	C	consensus_score=220.9	frequency=1	major_base=C	major_cov=34/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/43
RA	6137	.	1	1475649	0	A	G	consensus_score=206.1	frequency=1	major_base=G	major_cov=32/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/42
RA	6138	.	1	1475652	0	G	C	consensus_score=201.8	frequency=1	major_base=C	major_cov=32/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/42
RA	6139	.	1	1475658	0	A	G	consensus_score=198.0	frequency=1	major_base=G	major_cov=32/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/41
RA	6140	.	1	1475660	0	A	G	consensus_score=199.9	frequency=1	major_base=G	major_cov=32/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/41
RA	6141	.	1	1475666	0	A	G	consensus_score=229.7	frequency=1	major_base=G	major_cov=33/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/49
RA	6142	.	1	1475669	0	G	A	consensus_score=223.8	frequency=1	major_base=A	major_cov=33/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/49
RA	6143	.	1	1475682	0	G	A	consensus_score=209.0	frequency=1	major_base=A	major_cov=30/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/46
RA	6144	.	1	1475687	0	T	C	consensus_score=217.2	frequency=1	major_base=C	major_cov=30/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/46
RA	6145	.	1	1475694	0	C	T	consensus_score=205.7	frequency=1	major_base=T	major_cov=30/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/46
RA	6146	.	1	1475695	0	C	T	consensus_score=206.6	frequency=1	major_base=T	major_cov=30/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/46
RA	6147	.	1	1475753	0	T	C	consensus_score=195.9	frequency=1	major_base=C	major_cov=28/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/45
RA	6148	.	1	1475765	0	G	A	consensus_score=183.0	frequency=1	major_base=A	major_cov=22/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/45
RA	6149	.	1	1475772	0	G	A	consensus_score=171.0	frequency=1	major_base=A	major_cov=22/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/42
RA	6150	.	1	1475775	0	G	A	consensus_score=170.2	frequency=1	major_base=A	major_cov=22/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/42
RA	6151	.	1	1475778	0	G	A	consensus_score=172.3	frequency=1	major_base=A	major_cov=22/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/42
RA	6152	.	1	1475784	0	T	C	consensus_score=176.0	frequency=1	major_base=C	major_cov=22/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/42
RA	6153	.	1	1475785	0	G	A	consensus_score=168.8	frequency=1	major_base=A	major_cov=22/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/42
RA	6154	.	1	1475802	0	C	A	consensus_score=198.1	frequency=1	major_base=A	major_cov=25/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/47
RA	6155	.	1	1475824	0	G	A	consensus_score=223.0	frequency=1	major_base=A	major_cov=31/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/49
RA	6156	.	1	1475840	0	A	G	consensus_score=199.0	frequency=1	major_base=G	major_cov=25/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/47
RA	6157	.	1	1475856	0	A	G	consensus_score=190.5	frequency=1	major_base=G	major_cov=24/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/44
RA	6158	.	1	1475862	0	G	A	consensus_score=192.4	frequency=1	major_base=A	major_cov=24/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/45
RA	6159	.	1	1475880	0	T	C	consensus_score=172.2	frequency=1	major_base=C	major_cov=21/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/42
RA	6160	.	1	1475883	0	G	A	consensus_score=174.7	frequency=1	major_base=A	major_cov=21/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/42
RA	6161	.	1	1475898	0	G	A	consensus_score=180.7	frequency=1	major_base=A	major_cov=21/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/44
RA	6162	.	1	1475949	0	A	G	consensus_score=185.1	frequency=1	major_base=G	major_cov=20/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/46
RA	6163	.	1	1475953	0	A	G	consensus_score=185.8	frequency=1	major_base=G	major_cov=20/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/46
RA	6164	.	1	1475955	0	T	C	consensus_score=187.2	frequency=1	major_base=C	major_cov=20/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/46
RA	6165	.	1	1475961	0	G	A	consensus_score=186.1	frequency=1	major_base=A	major_cov=21/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/46
RA	6166	.	1	1475973	0	C	T	consensus_score=140.3	frequency=1	major_base=T	major_cov=15/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/38
RA	6167	.	1	1475974	0	A	G	consensus_score=145.7	frequency=1	major_base=G	major_cov=15/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/38
RA	6168	.	1	1475979	0	A	G	consensus_score=152.7	frequency=1	major_base=G	major_cov=17/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/39
RA	6169	.	1	1475991	0	C	T	consensus_score=148.9	frequency=1	major_base=T	major_cov=18/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/35
RA	6170	.	1	1476015	0	G	A	consensus_score=138.8	frequency=1	major_base=A	major_cov=18/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/34
RA	6171	.	1	1476017	0	A	G	consensus_score=144.9	frequency=1	major_base=G	major_cov=18/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/34
RA	6172	.	1	1476028	0	C	T	consensus_score=137.8	frequency=1	major_base=T	major_cov=18/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/31
RA	6173	.	1	1476048	0	G	A	consensus_score=123.8	frequency=1	major_base=A	major_cov=18/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/29
RA	6174	.	1	1476053	0	C	T	consensus_score=106.4	frequency=1	major_base=T	major_cov=15/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/26
RA	6175	.	1	1476054	0	A	G	consensus_score=115.8	frequency=1	major_base=G	major_cov=15/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/26
RA	6176	.	1	1476057	0	G	A	consensus_score=107.1	frequency=1	major_base=A	major_cov=15/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/26
RA	6177	.	1	1476065	0	G	A	consensus_score=107.5	frequency=1	major_base=A	major_cov=15/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/26
RA	6178	.	1	1476078	0	G	A	consensus_score=90.3	frequency=1	major_base=A	major_cov=12/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/23
RA	6179	.	1	1476079	0	C	G	consensus_score=98.7	frequency=1	major_base=G	major_cov=12/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/23
RA	6180	.	1	1476093	0	C	T	consensus_score=109.4	frequency=1	major_base=T	major_cov=16/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/25
RA	6181	.	1	1476106	0	A	G	consensus_score=106.1	frequency=1	major_base=G	major_cov=18/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/21
RA	6182	.	1	1476111	0	G	A	consensus_score=116.7	frequency=1	major_base=A	major_cov=22/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/23
RA	6183	.	1	1476120	0	G	A	consensus_score=143.7	frequency=1	major_base=A	major_cov=28/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/25
RA	6184	.	1	1476150	0	G	A	bias_e_value=1689660	bias_p_value=0.80343	consensus_score=176.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.442688	major_base=A	major_cov=43/27	major_frequency=9.859e-01	minor_base=T	minor_cov=1/0	new_cov=43/27	polymorphism_frequency=9.859e-01	polymorphism_score=-3.8	prediction=consensus	ref_cov=0/0	total_cov=44/27
RA	6185	.	1	1476210	0	G	A	bias_e_value=1664990	bias_p_value=0.791699	consensus_score=231.0	fisher_strand_p_value=0.428571	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=48/35	major_frequency=9.881e-01	minor_base=C	minor_cov=0/1	new_cov=48/35	polymorphism_frequency=9.881e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/36
RA	6186	.	1	1476234	0	T	C	consensus_score=255.2	frequency=1	major_base=C	major_cov=51/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/41
RA	6187	.	1	1476239	0	C	T	consensus_score=250.4	frequency=1	major_base=T	major_cov=50/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/41
RA	6188	.	1	1476252	0	A	G	consensus_score=251.2	frequency=1	major_base=G	major_cov=51/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/40
RA	6189	.	1	1476264	0	G	A	bias_e_value=645213	bias_p_value=0.306798	consensus_score=218.0	fisher_strand_p_value=0.0900343	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=48/37	major_frequency=9.659e-01	minor_base=C	minor_cov=0/3	new_cov=48/37	polymorphism_frequency=9.659e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/42
RA	6190	.	1	1476279	0	C	A	consensus_score=242.4	frequency=1	major_base=A	major_cov=48/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/41
RA	6191	.	1	1476288	0	G	A	bias_e_value=1746160	bias_p_value=0.830296	consensus_score=242.0	fisher_strand_p_value=0.477273	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=46/41	major_frequency=9.886e-01	minor_base=G	minor_cov=0/1	new_cov=46/41	polymorphism_frequency=9.886e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=46/42
RA	6192	.	1	1476300	0	A	G	consensus_score=245.9	frequency=1	major_base=G	major_cov=45/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/43
RA	6193	.	1	1476312	0	G	A	consensus_score=261.1	frequency=1	major_base=A	major_cov=48/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/43
RA	6194	.	1	1476408	0	A	C	consensus_score=143.6	frequency=1	major_base=C	major_cov=28/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/24
RA	6195	.	1	1476423	0	A	G	consensus_score=147.5	frequency=1	major_base=G	major_cov=29/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/25
RA	6196	.	1	1476432	0	C	T	bias_e_value=2103060	bias_p_value=1	consensus_score=159.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999435	major_base=T	major_cov=27/32	major_frequency=9.833e-01	minor_base=A	minor_cov=0/1	new_cov=27/32	polymorphism_frequency=9.833e-01	polymorphism_score=-5.8	prediction=consensus	ref_cov=0/0	total_cov=27/33
RA	6197	.	1	1476434	0	C	G	bias_e_value=2103060	bias_p_value=1	consensus_score=164.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=27/32	major_frequency=9.833e-01	minor_base=T	minor_cov=0/1	new_cov=27/32	polymorphism_frequency=9.833e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/33
RA	6198	.	1	1476452	0	A	C	consensus_score=185.8	frequency=1	major_base=C	major_cov=30/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/36
RA	6199	.	1	1476482	0	G	A	consensus_score=172.8	frequency=1	major_base=A	major_cov=26/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/37
RA	6200	.	1	1476483	0	C	G	consensus_score=177.2	frequency=1	major_base=G	major_cov=26/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/37
RA	6201	.	1	1476498	0	G	A	consensus_score=181.4	frequency=1	major_base=A	major_cov=26/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/38
RA	6202	.	1	1476509	0	T	C	consensus_score=169.7	frequency=1	major_base=C	major_cov=26/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/37
RA	6203	.	1	1476510	0	A	G	consensus_score=169.8	frequency=1	major_base=G	major_cov=26/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/37
RA	6204	.	1	1476534	0	T	C	consensus_score=197.1	frequency=1	major_base=C	major_cov=26/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/44
RA	6205	.	1	1476551	0	G	A	consensus_score=192.8	frequency=1	major_base=A	major_cov=25/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/46
RA	6206	.	1	1476588	0	C	T	consensus_score=182.7	frequency=1	major_base=T	major_cov=23/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/47
RA	6207	.	1	1476606	0	T	C	consensus_score=198.6	frequency=1	major_base=C	major_cov=20/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/48
RA	6208	.	1	1476640	0	A	G	consensus_score=177.8	frequency=1	major_base=G	major_cov=19/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/46
RA	6209	.	1	1476656	0	G	T	consensus_score=164.7	frequency=1	major_base=T	major_cov=15/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/46
RA	6210	.	1	1476666	0	G	A	consensus_score=162.4	frequency=1	major_base=A	major_cov=15/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/45
RA	6211	.	1	1476683	0	A	.	consensus_score=162.8	frequency=1	major_base=.	major_cov=13/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/26
RA	6212	.	1	1476686	0	A	G	consensus_score=104.8	frequency=1	major_base=G	major_cov=13/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/26
RA	6213	.	1	1476689	1	.	C	consensus_score=104.1	frequency=1	major_base=C	major_cov=13/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/26
RA	6214	.	1	1476698	0	T	C	consensus_score=114.0	frequency=1	major_base=C	major_cov=14/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/26
RA	6215	.	1	1476699	0	G	A	consensus_score=105.4	frequency=1	major_base=A	major_cov=14/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/26
RA	6216	.	1	1476702	0	C	T	bias_e_value=719753	bias_p_value=0.342241	consensus_score=89.3	fisher_strand_p_value=0.105263	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=11/26	major_frequency=9.487e-01	minor_base=G	minor_cov=2/0	new_cov=11/26	polymorphism_frequency=9.487e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=14/26
RA	6217	.	1	1476729	0	C	G	consensus_score=96.1	frequency=1	major_base=G	major_cov=10/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/26
RA	6218	.	1	1476732	0	G	A	consensus_score=98.5	frequency=1	major_base=A	major_cov=10/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/26
RA	6219	.	1	1476761	0	C	T	consensus_score=61.7	frequency=1	major_base=T	major_cov=11/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/17
RA	6220	.	1	1476792	1	.	C	bias_e_value=1762850	bias_p_value=0.838234	consensus_score=72.5	fisher_strand_p_value=0.488172	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=15/14	major_frequency=9.355e-01	minor_base=.	minor_cov=2/0	new_cov=15/14	polymorphism_frequency=9.355e-01	polymorphism_score=-1.1	prediction=consensus	ref_cov=2/0	total_cov=17/14
RA	6221	.	1	1476808	0	G	T	consensus_score=98.4	frequency=1	major_base=T	major_cov=19/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/19
RA	6222	.	1	1476817	0	C	T	consensus_score=109.9	frequency=1	major_base=T	major_cov=22/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/18
RA	6223	.	1	1476819	0	T	C	consensus_score=106.1	frequency=1	major_base=C	major_cov=22/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/18
RA	6224	.	1	1476840	0	T	C	consensus_score=122.0	frequency=1	major_base=C	major_cov=23/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/23
RA	6225	.	1	1476842	0	C	T	consensus_score=118.0	frequency=1	major_base=T	major_cov=23/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/23
RA	6226	.	1	1476852	0	G	A	consensus_score=141.3	frequency=1	major_base=A	major_cov=25/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/27
RA	6227	.	1	1476857	0	T	C	bias_e_value=2103040	bias_p_value=0.999994	consensus_score=133.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.99646	major_base=C	major_cov=24/23	major_frequency=9.792e-01	minor_base=.	minor_cov=1/0	new_cov=24/23	polymorphism_frequency=9.792e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=0/0	total_cov=25/23
RA	6228	.	1	1476860	0	A	.	bias_e_value=2102960	bias_p_value=0.999955	consensus_score=47.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.990521	major_base=.	major_cov=11/3	major_frequency=9.333e-01	minor_base=A	minor_cov=1/0	new_cov=11/3	polymorphism_frequency=9.333e-01	polymorphism_score=-2.7	prediction=consensus	ref_cov=1/0	total_cov=12/3
RA	6229	.	1	1476861	0	T	.	bias_e_value=2095760	bias_p_value=0.99653	consensus_score=48.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.917856	major_base=.	major_cov=11/3	major_frequency=9.333e-01	minor_base=C	minor_cov=1/0	new_cov=11/3	polymorphism_frequency=9.333e-01	polymorphism_score=-2.5	prediction=consensus	ref_cov=0/0	total_cov=12/3
RA	6230	.	1	1476862	0	A	.	bias_e_value=2080980	bias_p_value=0.989505	consensus_score=46.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.858661	major_base=.	major_cov=11/3	major_frequency=9.333e-01	minor_base=A	minor_cov=1/0	new_cov=11/3	polymorphism_frequency=9.333e-01	polymorphism_score=-2.2	prediction=consensus	ref_cov=1/0	total_cov=12/3
RA	6231	.	1	1476863	0	T	.	bias_e_value=2102960	bias_p_value=0.999955	consensus_score=47.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.990521	major_base=.	major_cov=11/3	major_frequency=9.333e-01	minor_base=T	minor_cov=1/0	new_cov=11/3	polymorphism_frequency=9.333e-01	polymorphism_score=-2.8	prediction=consensus	ref_cov=1/0	total_cov=12/3
RA	6232	.	1	1476864	0	G	.	consensus_score=55.1	frequency=1	major_base=.	major_cov=12/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/3
RA	6233	.	1	1476875	0	A	.	consensus_score=52.3	frequency=1	major_base=.	major_cov=12/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/3
RA	6234	.	1	1476876	0	A	.	consensus_score=52.3	frequency=1	major_base=.	major_cov=12/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/3
RA	6235	.	1	1476877	0	T	.	consensus_score=52.3	frequency=1	major_base=.	major_cov=12/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/3
RA	6236	.	1	1476878	0	A	.	consensus_score=52.3	frequency=1	major_base=.	major_cov=12/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/3
RA	6237	.	1	1476880	0	A	.	consensus_score=253.1	frequency=1	major_base=.	major_cov=29/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/31
RA	6238	.	1	1476887	0	G	A	consensus_score=163.2	frequency=1	major_base=A	major_cov=29/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/33
RA	6239	.	1	1476917	0	A	T	consensus_score=181.1	frequency=1	major_base=T	major_cov=34/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/35
RA	6240	.	1	1476930	1	.	T	consensus_score=172.1	frequency=1	major_base=T	major_cov=30/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/36
RA	6241	.	1	1476936	0	G	A	consensus_score=177.2	frequency=1	major_base=A	major_cov=30/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/36
RA	6242	.	1	1476938	0	A	T	consensus_score=184.2	frequency=1	major_base=T	major_cov=30/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/36
RA	6243	.	1	1476945	0	A	C	consensus_score=191.1	frequency=1	major_base=C	major_cov=33/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/38
RA	6244	.	1	1477011	0	G	A	consensus_score=228.6	frequency=1	major_base=A	major_cov=38/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/46
RA	6245	.	1	1477057	0	A	G	consensus_score=216.4	frequency=1	major_base=G	major_cov=37/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/41
RA	6246	.	1	1477126	0	G	A	consensus_score=182.5	frequency=1	major_base=A	major_cov=33/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/35
RA	6247	.	1	1477129	0	T	C	consensus_score=186.2	frequency=1	major_base=C	major_cov=33/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/35
RA	6248	.	1	1477150	0	G	A	consensus_score=193.1	frequency=1	major_base=A	major_cov=37/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/32
RA	6249	.	1	1477173	0	G	A	consensus_score=194.1	frequency=1	major_base=A	major_cov=35/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/37
RA	6250	.	1	1477175	0	A	G	consensus_score=199.7	frequency=1	major_base=G	major_cov=35/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/37
RA	6251	.	1	1477180	0	C	T	consensus_score=193.9	frequency=1	major_base=T	major_cov=35/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/37
RA	6252	.	1	1477249	0	A	G	consensus_score=222.9	frequency=1	major_base=G	major_cov=32/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/45
RA	6253	.	1	1477271	0	G	A	consensus_score=204.5	frequency=1	major_base=A	major_cov=29/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/45
RA	6254	.	1	1477276	0	A	G	consensus_score=210.9	frequency=1	major_base=G	major_cov=29/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/45
RA	6255	.	1	1477288	0	T	C	consensus_score=201.9	frequency=1	major_base=C	major_cov=27/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/44
RA	6256	.	1	1477297	0	C	T	consensus_score=163.3	frequency=1	major_base=T	major_cov=21/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/39
RA	6257	.	1	1477300	0	A	C	consensus_score=171.2	frequency=1	major_base=C	major_cov=21/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/39
RA	6258	.	1	1477306	0	C	A	consensus_score=154.1	frequency=1	major_base=A	major_cov=20/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/37
RA	6259	.	1	1477307	0	C	T	consensus_score=154.2	frequency=1	major_base=T	major_cov=20/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/37
RA	6260	.	1	1477309	0	G	A	consensus_score=147.9	frequency=1	major_base=A	major_cov=20/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/37
RA	6261	.	1	1477342	0	T	C	consensus_score=189.0	frequency=1	major_base=C	major_cov=25/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/41
RA	6262	.	1	1477352	0	G	T	consensus_score=193.6	frequency=1	major_base=T	major_cov=27/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/41
RA	6263	.	1	1477354	0	T	C	consensus_score=187.1	frequency=1	major_base=C	major_cov=27/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/41
RA	6264	.	1	1477383	0	A	T	consensus_score=194.3	frequency=1	major_base=T	major_cov=24/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/43
RA	6265	.	1	1477408	0	C	T	consensus_score=162.8	frequency=1	major_base=T	major_cov=20/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/41
RA	6266	.	1	1477426	0	C	A	consensus_score=150.9	frequency=1	major_base=A	major_cov=20/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/36
RA	6267	.	1	1477436	0	C	T	consensus_score=122.5	frequency=1	major_base=T	major_cov=15/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/32
RA	6268	.	1	1477446	0	G	A	consensus_score=128.6	frequency=1	major_base=A	major_cov=15/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/32
RA	6269	.	1	1477453	0	T	C	consensus_score=129.7	frequency=1	major_base=C	major_cov=14/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/32
RA	6270	.	1	1477463	0	G	C	consensus_score=77.1	frequency=1	major_base=C	major_cov=9/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/21
RA	6271	.	1	1477464	0	T	G	consensus_score=80.1	frequency=1	major_base=G	major_cov=9/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/21
RA	6272	.	1	1477467	0	A	C	consensus_score=82.5	frequency=1	major_base=C	major_cov=9/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/21
RA	6273	.	1	1477473	0	G	A	consensus_score=78.4	frequency=1	major_base=A	major_cov=9/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/21
RA	6274	.	1	1477478	0	C	T	consensus_score=83.5	frequency=1	major_base=T	major_cov=10/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/22
RA	6275	.	1	1477495	0	T	C	bias_e_value=2103060	bias_p_value=1	consensus_score=84.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=11/21	major_frequency=9.697e-01	minor_base=A	minor_cov=0/1	new_cov=11/21	polymorphism_frequency=9.697e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/22
RA	6276	.	1	1477499	0	A	G	consensus_score=87.7	frequency=1	major_base=G	major_cov=11/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/22
RA	6277	.	1	1477506	0	A	G	consensus_score=86.7	frequency=1	major_base=G	major_cov=12/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/20
RA	6278	.	1	1477513	0	A	G	consensus_score=76.0	frequency=1	major_base=G	major_cov=9/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/19
RA	6279	.	1	1477518	0	A	C	consensus_score=74.9	frequency=1	major_base=C	major_cov=9/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/19
RA	6280	.	1	1477523	0	G	A	consensus_score=73.3	frequency=1	major_base=A	major_cov=9/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/18
RA	6281	.	1	1477524	0	A	G	consensus_score=71.3	frequency=1	major_base=G	major_cov=9/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/18
RA	6282	.	1	1477529	0	T	C	consensus_score=78.6	frequency=1	major_base=C	major_cov=9/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/20
RA	6283	.	1	1477538	0	A	G	consensus_score=75.5	frequency=1	major_base=G	major_cov=9/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/19
RA	6284	.	1	1477540	0	C	T	consensus_score=73.0	frequency=1	major_base=T	major_cov=9/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/19
RA	6285	.	1	1477541	0	T	C	consensus_score=75.4	frequency=1	major_base=C	major_cov=9/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/19
RA	6286	.	1	1477562	0	A	.	consensus_score=115.0	frequency=1	major_base=.	major_cov=9/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/19
RA	6287	.	1	1477582	0	T	C	consensus_score=70.0	frequency=1	major_base=C	major_cov=10/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/17
RA	6288	.	1	1477592	0	A	G	consensus_score=69.2	frequency=1	major_base=G	major_cov=10/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/16
RA	6289	.	1	1477607	0	C	T	consensus_score=63.0	frequency=1	major_base=T	major_cov=11/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/15
RA	6290	.	1	1477613	0	T	A	consensus_score=67.5	frequency=1	major_base=A	major_cov=11/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/15
RA	6291	.	1	1477617	0	A	G	consensus_score=66.7	frequency=1	major_base=G	major_cov=11/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/15
RA	6292	.	1	1477634	0	C	T	consensus_score=77.2	frequency=1	major_base=T	major_cov=14/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/16
RA	6293	.	1	1477637	0	T	C	consensus_score=83.3	frequency=1	major_base=C	major_cov=14/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/16
RA	6294	.	1	1477645	0	T	C	consensus_score=81.4	frequency=1	major_base=C	major_cov=14/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/16
RA	6295	.	1	1477658	0	C	T	consensus_score=84.3	frequency=1	major_base=T	major_cov=17/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/16
RA	6296	.	1	1477673	0	A	G	consensus_score=88.2	frequency=1	major_base=G	major_cov=17/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/16
RA	6297	.	1	1477683	0	A	G	bias_e_value=2103060	bias_p_value=1	consensus_score=84.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=16/16	major_frequency=9.697e-01	minor_base=A	minor_cov=1/0	new_cov=16/16	polymorphism_frequency=9.697e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=17/16
RA	6298	.	1	1477723	0	C	T	consensus_score=67.0	frequency=1	major_base=T	major_cov=12/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/15
RA	6299	.	1	1477745	0	A	.	consensus_score=63.1	frequency=1	major_base=.	major_cov=8/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/8
RA	6300	.	1	1477753	1	.	T	consensus_score=37.9	frequency=1	major_base=T	major_cov=7/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/8
RA	6301	.	1	1477766	0	C	A	consensus_score=39.5	frequency=1	major_base=A	major_cov=7/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/9
RA	6302	.	1	1477810	0	A	G	consensus_score=29.7	frequency=1	major_base=G	major_cov=6/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/6
RA	6303	.	1	1477820	1	.	A	consensus_score=29.1	frequency=1	major_base=A	major_cov=7/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/6
RA	6304	.	1	1477824	0	G	A	consensus_score=30.1	frequency=1	major_base=A	major_cov=7/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/6
RA	6305	.	1	1477844	0	C	T	consensus_score=36.5	frequency=1	major_base=T	major_cov=7/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/8
RA	6306	.	1	1477871	0	A	.	bias_e_value=2102550	bias_p_value=0.999757	consensus_score=29.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.978023	major_base=.	major_cov=4/5	major_frequency=9.000e-01	minor_base=G	minor_cov=1/0	new_cov=4/5	polymorphism_frequency=9.000e-01	polymorphism_score=-1.4	prediction=consensus	ref_cov=0/0	total_cov=5/5
RA	6307	.	1	1477872	0	T	G	consensus_score=20.1	frequency=1	major_base=G	major_cov=4/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/5
RA	6308	.	1	1477921	0	G	A	consensus_score=32.6	frequency=1	major_base=A	major_cov=6/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/8
RA	6309	.	1	1477974	1	.	G	consensus_score=43.2	frequency=1	major_base=G	major_cov=9/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/8
RA	6310	.	1	1477993	0	A	G	consensus_score=41.1	frequency=1	major_base=G	major_cov=9/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/7
RA	6311	.	1	1478003	0	G	A	consensus_score=36.9	frequency=1	major_base=A	major_cov=10/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/6
RA	6312	.	1	1478021	1	.	A	consensus_score=40.5	frequency=1	major_base=A	major_cov=10/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/7
RA	6313	.	1	1478054	0	A	.	consensus_score=58.3	frequency=1	major_base=.	major_cov=7/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/8
RA	6314	.	1	1478057	0	G	A	consensus_score=35.4	frequency=1	major_base=A	major_cov=7/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/8
RA	6315	.	1	1478060	0	A	G	consensus_score=35.3	frequency=1	major_base=G	major_cov=7/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/8
RA	6316	.	1	1478061	0	C	G	consensus_score=35.7	frequency=1	major_base=G	major_cov=7/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/8
RA	6317	.	1	1478083	0	A	C	consensus_score=74.2	frequency=1	major_base=C	major_cov=14/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/13
RA	6318	.	1	1478101	0	T	C	consensus_score=75.5	frequency=1	major_base=C	major_cov=17/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/11
RA	6319	.	1	1478176	0	C	T	consensus_score=74.7	frequency=1	major_base=T	major_cov=18/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/11
RA	6320	.	1	1478181	0	T	C	consensus_score=80.4	frequency=1	major_base=C	major_cov=18/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/11
RA	6321	.	1	1478185	0	G	T	consensus_score=73.9	frequency=1	major_base=T	major_cov=18/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/11
RA	6322	.	1	1478204	0	A	G	consensus_score=87.4	frequency=1	major_base=G	major_cov=18/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/13
RA	6323	.	1	1478206	0	C	T	consensus_score=80.3	frequency=1	major_base=T	major_cov=18/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/13
RA	6324	.	1	1478226	0	A	G	consensus_score=84.0	frequency=1	major_base=G	major_cov=18/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/12
RA	6325	.	1	1478228	0	A	G	consensus_score=83.9	frequency=1	major_base=G	major_cov=18/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/12
RA	6326	.	1	1478260	0	C	T	consensus_score=68.9	frequency=1	major_base=T	major_cov=15/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/12
RA	6327	.	1	1478272	0	C	T	consensus_score=63.6	frequency=1	major_base=T	major_cov=14/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/11
RA	6328	.	1	1478299	0	T	A	consensus_score=47.4	deleted=1	frequency=1	major_base=A	major_cov=10/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/9
RA	6329	.	1	1478312	0	G	A	consensus_score=12.7	deleted=1	frequency=1	major_base=A	major_cov=4/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/3
RA	6330	.	1	1478491	0	G	A	consensus_score=22.3	deleted=1	frequency=1	major_base=A	major_cov=5/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/5
RA	6331	.	1	1478506	0	T	C	consensus_score=36.6	deleted=1	frequency=1	major_base=C	major_cov=8/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/7
RA	6332	.	1	1478512	0	G	A	consensus_score=38.0	deleted=1	frequency=1	major_base=A	major_cov=8/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/8
RA	6333	.	1	1478515	0	A	G	consensus_score=40.5	deleted=1	frequency=1	major_base=G	major_cov=8/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/8
RA	6334	.	1	1478559	0	C	T	consensus_score=87.2	frequency=1	major_base=T	major_cov=19/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/14
RA	6335	.	1	1478605	0	A	G	consensus_score=115.3	frequency=1	major_base=G	major_cov=26/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/17
RA	6336	.	1	1478627	0	G	A	consensus_score=158.3	frequency=1	major_base=A	major_cov=40/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/20
RA	6337	.	1	1478628	0	T	G	consensus_score=163.6	frequency=1	major_base=G	major_cov=40/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/20
RA	6338	.	1	1478664	0	T	A	consensus_score=201.6	frequency=1	major_base=A	major_cov=49/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/26
RA	6339	.	1	1478704	0	A	.	consensus_score=353.7	frequency=1	major_base=.	major_cov=52/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/31
RA	6340	.	1	1478727	0	T	C	consensus_score=238.1	frequency=1	major_base=C	major_cov=51/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/34
RA	6341	.	1	1478728	0	A	G	consensus_score=234.6	frequency=1	major_base=G	major_cov=51/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/34
RA	6342	.	1	1478737	0	G	A	consensus_score=222.8	frequency=1	major_base=A	major_cov=50/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/32
RA	6343	.	1	1478746	0	A	C	consensus_score=239.0	frequency=1	major_base=C	major_cov=53/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/34
RA	6344	.	1	1478750	0	T	C	bias_e_value=2103050	bias_p_value=0.999997	consensus_score=234.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.997597	major_base=C	major_cov=52/34	major_frequency=9.885e-01	minor_base=T	minor_cov=1/0	new_cov=52/34	polymorphism_frequency=9.885e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=53/34
RA	6345	.	1	1478751	0	A	G	consensus_score=239.0	frequency=1	major_base=G	major_cov=53/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/34
RA	6346	.	1	1478758	0	A	G	consensus_score=242.1	frequency=1	major_base=G	major_cov=50/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/34
RA	6347	.	1	1478759	0	C	T	consensus_score=229.5	frequency=1	major_base=T	major_cov=50/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/34
RA	6348	.	1	1478770	0	G	A	consensus_score=247.2	frequency=1	major_base=A	major_cov=57/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/35
RA	6349	.	1	1478786	0	C	T	consensus_score=256.2	frequency=1	major_base=T	major_cov=55/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/33
RA	6350	.	1	1478791	0	A	C	consensus_score=248.6	frequency=1	major_base=C	major_cov=53/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/35
RA	6351	.	1	1478806	0	G	A	consensus_score=268.7	frequency=1	major_base=A	major_cov=54/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/40
RA	6352	.	1	1478808	0	C	T	consensus_score=254.8	frequency=1	major_base=T	major_cov=54/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/40
RA	6353	.	1	1478860	0	A	G	consensus_score=282.0	frequency=1	major_base=G	major_cov=52/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/46
RA	6354	.	1	1478901	0	A	G	consensus_score=252.5	frequency=1	major_base=G	major_cov=47/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/46
RA	6355	.	1	1478917	0	T	C	consensus_score=272.4	frequency=1	major_base=C	major_cov=48/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/46
RA	6356	.	1	1478965	0	C	T	consensus_score=227.6	frequency=1	major_base=T	major_cov=41/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/44
RA	6357	.	1	1478982	0	C	G	consensus_score=248.5	frequency=1	major_base=G	major_cov=42/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/44
RA	6358	.	1	1479058	0	G	A	consensus_score=211.0	frequency=1	major_base=A	major_cov=34/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/45
RA	6359	.	1	1479154	0	G	A	consensus_score=139.9	frequency=1	major_base=A	major_cov=27/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/24
RA	6360	.	1	1479265	0	A	G	consensus_score=152.8	frequency=1	major_base=G	major_cov=31/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/23
RA	6361	.	1	1479310	0	C	T	consensus_score=163.2	frequency=1	major_base=T	major_cov=38/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/21
RA	6362	.	1	1479311	0	A	C	consensus_score=162.3	frequency=1	major_base=C	major_cov=38/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/21
RA	6363	.	1	1479322	0	G	A	consensus_score=169.0	frequency=1	major_base=A	major_cov=37/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/23
RA	6364	.	1	1479333	0	A	G	consensus_score=158.3	frequency=1	major_base=G	major_cov=36/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/23
RA	6365	.	1	1479360	0	G	A	consensus_score=161.8	frequency=1	major_base=A	major_cov=34/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/24
RA	6366	.	1	1479375	0	A	G	consensus_score=163.2	frequency=1	major_base=G	major_cov=36/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/24
RA	6367	.	1	1479408	0	T	C	consensus_score=171.9	frequency=1	major_base=C	major_cov=40/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/20
RA	6368	.	1	1479447	0	A	G	consensus_score=207.4	frequency=1	major_base=G	major_cov=45/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/28
RA	6369	.	1	1479570	0	C	T	consensus_score=234.8	frequency=1	major_base=T	major_cov=45/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/40
RA	6370	.	1	1479588	0	A	T	consensus_score=218.2	frequency=1	major_base=T	major_cov=44/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/38
RA	6371	.	1	1479595	0	C	T	consensus_score=211.6	frequency=1	major_base=T	major_cov=41/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/38
RA	6372	.	1	1479597	0	A	G	consensus_score=231.4	frequency=1	major_base=G	major_cov=41/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/38
RA	6373	.	1	1479598	0	G	A	consensus_score=208.2	frequency=1	major_base=A	major_cov=41/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/38
RA	6374	.	1	1479603	0	G	A	consensus_score=209.4	frequency=1	major_base=A	major_cov=41/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/38
RA	6375	.	1	1479605	0	A	G	consensus_score=230.2	frequency=1	major_base=G	major_cov=41/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/38
RA	6376	.	1	1479615	0	T	C	consensus_score=215.5	frequency=1	major_base=C	major_cov=41/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/38
RA	6377	.	1	1479635	0	A	G	consensus_score=203.4	frequency=1	major_base=G	major_cov=36/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/34
RA	6378	.	1	1479642	0	T	C	consensus_score=188.2	frequency=1	major_base=C	major_cov=35/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/31
RA	6379	.	1	1479672	0	T	C	consensus_score=145.6	frequency=1	major_base=C	major_cov=29/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/24
RA	6380	.	1	1479684	0	T	A	consensus_score=99.9	frequency=1	major_base=A	major_cov=21/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/17
RA	6381	.	1	1479685	0	G	T	consensus_score=100.8	frequency=1	major_base=T	major_cov=21/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/17
RA	6382	.	1	1479688	0	A	G	consensus_score=108.1	frequency=1	major_base=G	major_cov=21/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/17
RA	6383	.	1	1479690	0	C	T	consensus_score=98.3	frequency=1	major_base=T	major_cov=21/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/17
RA	6384	.	1	1479699	0	A	G	consensus_score=138.0	frequency=1	major_base=G	major_cov=30/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/19
RA	6385	.	1	1479704	0	T	C	consensus_score=131.5	frequency=1	major_base=C	major_cov=29/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/19
RA	6386	.	1	1479705	0	T	C	consensus_score=128.7	frequency=1	major_base=C	major_cov=29/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/19
RA	6387	.	1	1479717	0	G	C	consensus_score=134.3	frequency=1	major_base=C	major_cov=29/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/20
RA	6388	.	1	1479723	0	C	T	consensus_score=132.8	frequency=1	major_base=T	major_cov=29/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/19
RA	6389	.	1	1479751	0	A	G	consensus_score=119.4	frequency=1	major_base=G	major_cov=29/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/13
RA	6390	.	1	1479762	0	A	G	consensus_score=96.6	frequency=1	major_base=G	major_cov=25/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/10
RA	6391	.	1	1479764	0	T	C	consensus_score=97.2	frequency=1	major_base=C	major_cov=25/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/10
RA	6392	.	1	1479766	0	T	G	consensus_score=90.9	frequency=1	major_base=G	major_cov=25/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/10
RA	6393	.	1	1479772	0	T	C	consensus_score=96.9	frequency=1	major_base=C	major_cov=25/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/10
RA	6394	.	1	1479781	0	A	C	consensus_score=76.0	frequency=1	major_base=C	major_cov=19/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/9
RA	6395	.	1	1479783	0	A	G	consensus_score=72.6	frequency=1	major_base=G	major_cov=19/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/9
RA	6396	.	1	1479786	0	C	T	consensus_score=74.6	frequency=1	major_base=T	major_cov=19/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/9
RA	6397	.	1	1479790	0	A	G	consensus_score=77.2	frequency=1	major_base=G	major_cov=19/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/9
RA	6398	.	1	1479796	0	T	G	consensus_score=78.3	frequency=1	major_base=G	major_cov=19/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/9
RA	6399	.	1	1479797	0	C	T	consensus_score=72.2	frequency=1	major_base=T	major_cov=19/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/9
RA	6400	.	1	1479799	0	A	G	consensus_score=76.6	frequency=1	major_base=G	major_cov=19/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/9
RA	6401	.	1	1479809	0	G	.	consensus_score=96.6	frequency=1	major_base=.	major_cov=16/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/8
RA	6402	.	1	1479810	0	T	.	consensus_score=96.6	frequency=1	major_base=.	major_cov=16/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/8
RA	6403	.	1	1479813	0	T	.	consensus_score=97.7	frequency=1	major_base=.	major_cov=16/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/8
RA	6404	.	1	1479814	0	C	A	consensus_score=58.7	frequency=1	major_base=A	major_cov=16/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/8
RA	6405	.	1	1479820	0	G	A	consensus_score=59.3	frequency=1	major_base=A	major_cov=16/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/8
RA	6406	.	1	1479825	0	A	G	consensus_score=66.4	frequency=1	major_base=G	major_cov=16/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/8
RA	6407	.	1	1479828	0	G	A	consensus_score=59.7	frequency=1	major_base=A	major_cov=16/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/8
RA	6408	.	1	1479831	0	A	G	consensus_score=61.5	frequency=1	major_base=G	major_cov=16/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/8
RA	6409	.	1	1479832	0	G	T	consensus_score=61.5	frequency=1	major_base=T	major_cov=16/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/8
RA	6410	.	1	1479833	0	C	T	consensus_score=62.3	frequency=1	major_base=T	major_cov=16/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/8
RA	6411	.	1	1479834	1	.	G	bias_e_value=1781690	bias_p_value=0.847189	consensus_score=57.8	fisher_strand_p_value=0.536232	frequency=1	ks_quality_p_value=0.934091	major_base=G	major_cov=14/8	major_frequency=9.167e-01	minor_base=.	minor_cov=2/0	new_cov=14/8	polymorphism_frequency=9.167e-01	polymorphism_score=1.3	prediction=consensus	ref_cov=2/0	total_cov=16/8
RA	6412	.	1	1479836	0	A	T	bias_e_value=1830510	bias_p_value=0.870405	consensus_score=54.3	fisher_strand_p_value=0.536232	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=14/8	major_frequency=9.167e-01	minor_base=A	minor_cov=2/0	new_cov=14/8	polymorphism_frequency=9.167e-01	polymorphism_score=-4.6	prediction=consensus	ref_cov=2/0	total_cov=16/8
RA	6413	.	1	1479838	0	G	T	consensus_score=59.9	frequency=1	major_base=T	major_cov=16/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/8
RA	6414	.	1	1479841	0	A	.	consensus_score=96.5	frequency=1	major_base=.	major_cov=16/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/8
RA	6415	.	1	1479842	0	T	C	consensus_score=65.1	frequency=1	major_base=C	major_cov=16/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/8
RA	6416	.	1	1479849	0	C	T	consensus_score=59.4	frequency=1	major_base=T	major_cov=16/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/8
RA	6417	.	1	1479851	0	A	G	consensus_score=66.3	frequency=1	major_base=G	major_cov=16/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/8
RA	6418	.	1	1479853	0	C	G	consensus_score=65.4	frequency=1	major_base=G	major_cov=16/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/8
RA	6419	.	1	1479857	0	A	T	consensus_score=61.2	frequency=1	major_base=T	major_cov=16/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/8
RA	6420	.	1	1479864	0	T	C	consensus_score=99.3	frequency=1	major_base=C	major_cov=23/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/14
RA	6421	.	1	1479877	0	C	T	consensus_score=130.3	frequency=1	major_base=T	major_cov=30/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/19
RA	6422	.	1	1479900	0	A	T	consensus_score=167.9	frequency=1	major_base=T	major_cov=37/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/26
RA	6423	.	1	1479930	0	A	G	consensus_score=194.7	frequency=1	major_base=G	major_cov=39/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/29
RA	6424	.	1	1479939	0	T	C	consensus_score=185.9	frequency=1	major_base=C	major_cov=35/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/30
RA	6425	.	1	1479950	0	C	T	consensus_score=207.7	frequency=1	major_base=T	major_cov=38/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/36
RA	6426	.	1	1480054	0	A	G	consensus_score=304.6	frequency=1	major_base=G	major_cov=47/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/57
RA	6427	.	1	1480075	0	G	A	bias_e_value=2103060	bias_p_value=1	consensus_score=309.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999333	major_base=A	major_cov=54/55	major_frequency=9.909e-01	minor_base=G	minor_cov=0/1	new_cov=54/55	polymorphism_frequency=9.909e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=54/56
RA	6428	.	1	1480282	0	T	G	consensus_score=188.3	frequency=1	major_base=G	major_cov=29/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/39
RA	6429	.	1	1480285	0	C	T	consensus_score=184.2	frequency=1	major_base=T	major_cov=29/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/39
RA	6430	.	1	1480288	0	A	G	consensus_score=192.6	frequency=1	major_base=G	major_cov=29/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/39
RA	6431	.	1	1480291	0	A	G	consensus_score=186.9	frequency=1	major_base=G	major_cov=29/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/39
RA	6432	.	1	1480294	0	C	T	consensus_score=178.4	frequency=1	major_base=T	major_cov=29/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/39
RA	6433	.	1	1480300	0	T	C	consensus_score=184.4	frequency=1	major_base=C	major_cov=29/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/39
RA	6434	.	1	1480321	0	G	C	consensus_score=174.6	frequency=1	major_base=C	major_cov=25/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/36
RA	6435	.	1	1480327	0	T	C	consensus_score=172.2	frequency=1	major_base=C	major_cov=24/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/36
RA	6436	.	1	1480336	0	C	T	consensus_score=154.3	frequency=1	major_base=T	major_cov=24/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/34
RA	6437	.	1	1480351	0	T	G	consensus_score=146.6	frequency=1	major_base=G	major_cov=23/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/29
RA	6438	.	1	1480354	0	A	G	consensus_score=147.0	frequency=1	major_base=G	major_cov=23/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/29
RA	6439	.	1	1480359	0	G	A	consensus_score=135.6	frequency=1	major_base=A	major_cov=23/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/28
RA	6440	.	1	1480363	0	C	T	consensus_score=128.3	frequency=1	major_base=T	major_cov=21/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/28
RA	6441	.	1	1480384	0	A	G	consensus_score=120.4	frequency=1	major_base=G	major_cov=17/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/26
RA	6442	.	1	1480387	0	A	G	consensus_score=119.6	frequency=1	major_base=G	major_cov=17/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/26
RA	6443	.	1	1480396	0	C	T	consensus_score=116.5	frequency=1	major_base=T	major_cov=19/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/24
RA	6444	.	1	1480402	0	T	C	consensus_score=106.6	frequency=1	major_base=C	major_cov=17/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/21
RA	6445	.	1	1480414	0	G	A	consensus_score=97.7	frequency=1	major_base=A	major_cov=20/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/17
RA	6446	.	1	1480417	0	A	T	consensus_score=99.7	frequency=1	major_base=T	major_cov=20/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/17
RA	6447	.	1	1480423	0	C	T	consensus_score=107.4	frequency=1	major_base=T	major_cov=20/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/19
RA	6448	.	1	1480429	0	T	A	consensus_score=99.3	frequency=1	major_base=A	major_cov=19/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/19
RA	6449	.	1	1480447	0	G	A	consensus_score=116.4	frequency=1	major_base=A	major_cov=24/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/20
RA	6450	.	1	1480453	0	C	T	consensus_score=114.4	frequency=1	major_base=T	major_cov=24/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/19
RA	6451	.	1	1480479	0	G	A	consensus_score=114.6	frequency=1	major_base=A	major_cov=26/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/17
RA	6452	.	1	1480480	0	T	C	consensus_score=117.1	frequency=1	major_base=C	major_cov=26/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/17
RA	6453	.	1	1480484	0	A	C	consensus_score=114.2	frequency=1	major_base=C	major_cov=26/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/17
RA	6454	.	1	1480504	0	A	G	consensus_score=134.3	frequency=1	major_base=G	major_cov=27/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/20
RA	6455	.	1	1480510	0	A	G	consensus_score=134.9	frequency=1	major_base=G	major_cov=27/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/20
RA	6456	.	1	1480516	0	C	T	consensus_score=124.3	frequency=1	major_base=T	major_cov=27/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/20
RA	6457	.	1	1480517	0	T	G	consensus_score=135.1	frequency=1	major_base=G	major_cov=27/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/20
RA	6458	.	1	1480522	0	A	G	consensus_score=131.5	frequency=1	major_base=G	major_cov=27/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/20
RA	6459	.	1	1480525	0	A	G	consensus_score=126.9	frequency=1	major_base=G	major_cov=27/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/20
RA	6460	.	1	1480540	0	T	C	consensus_score=164.1	frequency=1	major_base=C	major_cov=32/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/25
RA	6461	.	1	1480555	0	C	T	consensus_score=183.2	frequency=1	major_base=T	major_cov=35/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/32
RA	6462	.	1	1480576	0	C	A	consensus_score=204.5	frequency=1	major_base=A	major_cov=37/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/40
RA	6463	.	1	1480579	0	T	C	consensus_score=212.5	frequency=1	major_base=C	major_cov=37/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/40
RA	6464	.	1	1480624	0	A	G	consensus_score=248.6	frequency=1	major_base=G	major_cov=44/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/42
RA	6465	.	1	1480639	0	A	G	bias_e_value=2102440	bias_p_value=0.999707	consensus_score=249.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.975876	major_base=G	major_cov=45/45	major_frequency=9.890e-01	minor_base=T	minor_cov=0/1	new_cov=45/45	polymorphism_frequency=9.890e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=0/0	total_cov=45/46
RA	6466	.	1	1480645	0	C	T	consensus_score=251.8	frequency=1	major_base=T	major_cov=44/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/48
RA	6467	.	1	1480657	0	C	T	bias_e_value=2071230	bias_p_value=0.984866	consensus_score=231.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.831144	major_base=T	major_cov=41/44	major_frequency=9.884e-01	minor_base=A	minor_cov=0/1	new_cov=41/44	polymorphism_frequency=9.884e-01	polymorphism_score=-3.9	prediction=consensus	ref_cov=0/0	total_cov=41/45
RA	6468	.	1	1480744	0	T	C	consensus_score=235.4	frequency=1	major_base=C	major_cov=35/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/51
RA	6469	.	1	1480747	0	G	A	consensus_score=244.0	frequency=1	major_base=A	major_cov=35/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/51
RA	6470	.	1	1480762	0	C	G	consensus_score=225.7	frequency=1	major_base=G	major_cov=35/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/47
RA	6471	.	1	1480774	0	T	C	consensus_score=241.4	frequency=1	major_base=C	major_cov=35/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/49
RA	6472	.	1	1480798	0	A	G	consensus_score=238.9	frequency=1	major_base=G	major_cov=40/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/43
RA	6473	.	1	1480831	0	C	A	consensus_score=205.6	frequency=1	major_base=A	major_cov=36/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/40
RA	6474	.	1	1480858	0	G	A	consensus_score=190.7	frequency=1	major_base=A	major_cov=32/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/39
RA	6475	.	1	1480861	0	A	T	consensus_score=185.3	frequency=1	major_base=T	major_cov=32/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/39
RA	6476	.	1	1480879	0	G	A	consensus_score=178.7	frequency=1	major_base=A	major_cov=31/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/35
RA	6477	.	1	1480882	0	G	A	consensus_score=183.8	frequency=1	major_base=A	major_cov=31/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/35
RA	6478	.	1	1480887	0	G	A	consensus_score=184.5	frequency=1	major_base=A	major_cov=34/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/35
RA	6479	.	1	1480897	0	A	G	consensus_score=184.3	frequency=1	major_base=G	major_cov=34/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/34
RA	6480	.	1	1480909	0	C	A	consensus_score=184.5	frequency=1	major_base=A	major_cov=40/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/29
RA	6481	.	1	1480930	0	A	G	consensus_score=224.4	frequency=1	major_base=G	major_cov=45/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/35
RA	6482	.	1	1480942	0	G	T	consensus_score=214.8	frequency=1	major_base=T	major_cov=45/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/35
RA	6483	.	1	1480945	0	T	C	consensus_score=230.0	frequency=1	major_base=C	major_cov=45/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/35
RA	6484	.	1	1480988	0	A	T	consensus_score=197.5	frequency=1	major_base=T	major_cov=38/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/35
RA	6485	.	1	1480999	0	T	C	consensus_score=196.3	frequency=1	major_base=C	major_cov=38/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/30
RA	6486	.	1	1481002	0	T	A	consensus_score=184.1	frequency=1	major_base=A	major_cov=38/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/30
RA	6487	.	1	1481005	0	A	T	consensus_score=182.0	frequency=1	major_base=T	major_cov=38/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/30
RA	6488	.	1	1481023	0	T	G	bias_e_value=1591960	bias_p_value=0.756975	consensus_score=233.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.389732	major_base=G	major_cov=44/40	major_frequency=9.882e-01	minor_base=.	minor_cov=1/0	new_cov=44/40	polymorphism_frequency=9.882e-01	polymorphism_score=-3.3	prediction=consensus	ref_cov=0/0	total_cov=45/40
RA	6489	.	1	1481027	0	A	G	bias_e_value=867326	bias_p_value=0.412412	consensus_score=227.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.138557	major_base=G	major_cov=44/40	major_frequency=9.882e-01	minor_base=A	minor_cov=1/0	new_cov=44/40	polymorphism_frequency=9.882e-01	polymorphism_score=-5.5	prediction=consensus	ref_cov=1/0	total_cov=45/40
RA	6490	.	1	1481065	0	A	G	consensus_score=243.2	frequency=1	major_base=G	major_cov=43/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/41
RA	6491	.	1	1481077	0	G	A	consensus_score=233.7	frequency=1	major_base=A	major_cov=44/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/43
RA	6492	.	1	1481193	0	G	A	consensus_score=288.5	frequency=1	major_base=A	major_cov=39/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/64
RA	6493	.	1	1481233	0	G	A	consensus_score=271.8	frequency=1	major_base=A	major_cov=39/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/60
RA	6494	.	1	1481276	0	A	G	consensus_score=212.9	frequency=1	major_base=G	major_cov=24/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/50
RA	6495	.	1	1481353	0	A	G	consensus_score=185.4	frequency=1	major_base=G	major_cov=31/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/34
RA	6496	.	1	1481377	0	A	G	consensus_score=157.0	frequency=1	major_base=G	major_cov=24/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/31
RA	6497	.	1	1481412	0	C	T	consensus_score=155.1	frequency=1	major_base=T	major_cov=28/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/27
RA	6498	.	1	1481441	0	C	T	consensus_score=154.6	frequency=1	major_base=T	major_cov=30/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/25
RA	6499	.	1	1481444	0	C	T	consensus_score=154.4	frequency=1	major_base=T	major_cov=30/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/25
RA	6500	.	1	1481445	0	C	T	consensus_score=154.7	frequency=1	major_base=T	major_cov=30/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/25
RA	6501	.	1	1481450	0	T	C	consensus_score=148.1	frequency=1	major_base=C	major_cov=30/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/25
RA	6502	.	1	1481453	0	C	A	consensus_score=144.1	frequency=1	major_base=A	major_cov=30/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/25
RA	6503	.	1	1481468	0	G	A	consensus_score=137.8	frequency=1	major_base=A	major_cov=29/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/24
RA	6504	.	1	1481479	0	A	G	consensus_score=156.1	frequency=1	major_base=G	major_cov=29/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/25
RA	6505	.	1	1481539	0	G	A	consensus_score=132.7	frequency=1	major_base=A	major_cov=28/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/22
RA	6506	.	1	1481562	0	C	T	consensus_score=83.7	frequency=1	major_base=T	major_cov=19/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/14
RA	6507	.	1	1481589	0	T	C	consensus_score=103.0	frequency=1	major_base=C	major_cov=21/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/16
RA	6508	.	1	1481595	0	C	T	consensus_score=93.9	frequency=1	major_base=T	major_cov=20/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/16
RA	6509	.	1	1481598	0	T	C	consensus_score=101.4	frequency=1	major_base=C	major_cov=20/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/16
RA	6510	.	1	1481628	0	G	A	consensus_score=115.5	frequency=1	major_base=A	major_cov=27/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/17
RA	6511	.	1	1481640	0	A	C	consensus_score=127.7	frequency=1	major_base=C	major_cov=28/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/17
RA	6512	.	1	1481677	0	A	G	consensus_score=146.4	frequency=1	major_base=G	major_cov=26/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/25
RA	6513	.	1	1481709	0	T	C	consensus_score=148.4	frequency=1	major_base=C	major_cov=26/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/28
RA	6514	.	1	1481710	0	A	G	consensus_score=146.0	frequency=1	major_base=G	major_cov=26/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/28
RA	6515	.	1	1481721	0	T	C	consensus_score=162.5	frequency=1	major_base=C	major_cov=27/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/30
RA	6516	.	1	1481756	0	C	T	consensus_score=138.2	frequency=1	major_base=T	major_cov=22/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/30
RA	6517	.	1	1481792	0	C	A	consensus_score=154.3	frequency=1	major_base=A	major_cov=24/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/31
RA	6518	.	1	1481793	0	C	G	consensus_score=149.3	frequency=1	major_base=G	major_cov=24/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/31
RA	6519	.	1	1481795	0	A	G	consensus_score=152.7	frequency=1	major_base=G	major_cov=24/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/31
RA	6520	.	1	1481802	0	A	G	consensus_score=159.2	frequency=1	major_base=G	major_cov=26/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/32
RA	6521	.	1	1481955	0	T	A	consensus_score=127.2	frequency=1	major_base=A	major_cov=25/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/23
RA	6522	.	1	1481958	0	C	T	consensus_score=125.4	frequency=1	major_base=T	major_cov=25/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/23
RA	6523	.	1	1481968	0	A	G	consensus_score=162.0	frequency=1	major_base=G	major_cov=35/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/22
RA	6524	.	1	1481973	0	G	A	consensus_score=163.1	frequency=1	major_base=A	major_cov=36/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/24
RA	6525	.	1	1481991	0	C	T	consensus_score=183.0	frequency=1	major_base=T	major_cov=42/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/26
RA	6526	.	1	1482011	0	T	C	consensus_score=194.4	frequency=1	major_base=C	major_cov=41/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/27
RA	6527	.	1	1482063	0	C	T	consensus_score=211.2	frequency=1	major_base=T	major_cov=46/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/30
RA	6528	.	1	1482069	0	A	G	consensus_score=204.3	frequency=1	major_base=G	major_cov=44/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/30
RA	6529	.	1	1482078	0	A	G	consensus_score=220.5	frequency=1	major_base=G	major_cov=43/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/33
RA	6530	.	1	1482099	0	C	T	consensus_score=212.8	frequency=1	major_base=T	major_cov=43/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/35
RA	6531	.	1	1482109	0	G	A	consensus_score=183.8	frequency=1	major_base=A	major_cov=39/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/29
RA	6532	.	1	1482132	0	G	A	consensus_score=182.4	frequency=1	major_base=A	major_cov=37/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/31
RA	6533	.	1	1482138	0	C	T	consensus_score=202.5	frequency=1	major_base=T	major_cov=42/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/34
RA	6534	.	1	1482169	0	A	G	consensus_score=224.7	frequency=1	major_base=G	major_cov=41/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/37
RA	6535	.	1	1482216	0	C	A	consensus_score=255.1	frequency=1	major_base=A	major_cov=44/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/51
RA	6536	.	1	1482249	0	C	T	consensus_score=279.6	frequency=1	major_base=T	major_cov=49/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/54
RA	6537	.	1	1482273	0	T	C	consensus_score=282.6	frequency=1	major_base=C	major_cov=45/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/52
RA	6538	.	1	1482276	0	G	A	consensus_score=257.4	frequency=1	major_base=A	major_cov=45/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/52
RA	6539	.	1	1482311	0	C	T	consensus_score=275.7	frequency=1	major_base=T	major_cov=46/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/55
RA	6540	.	1	1482318	0	C	A	consensus_score=261.3	frequency=1	major_base=A	major_cov=46/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/52
RA	6541	.	1	1482324	0	C	T	consensus_score=256.7	frequency=1	major_base=T	major_cov=46/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/49
RA	6542	.	1	1482363	0	A	G	consensus_score=221.6	frequency=1	major_base=G	major_cov=35/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/43
RA	6543	.	1	1482366	0	T	C	consensus_score=211.8	frequency=1	major_base=C	major_cov=35/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/43
RA	6544	.	1	1482414	0	G	A	consensus_score=177.3	frequency=1	major_base=A	major_cov=22/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/44
RA	6545	.	1	1482432	0	A	G	consensus_score=175.7	frequency=1	major_base=G	major_cov=20/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/42
RA	6546	.	1	1482450	0	C	T	consensus_score=129.2	frequency=1	major_base=T	major_cov=15/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/35
RA	6547	.	1	1482462	0	T	C	consensus_score=124.0	frequency=1	major_base=C	major_cov=13/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/31
RA	6548	.	1	1482465	0	A	G	consensus_score=113.6	frequency=1	major_base=G	major_cov=12/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/29
RA	6549	.	1	1482517	0	A	G	consensus_score=90.0	frequency=1	major_base=G	major_cov=11/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/22
RA	6550	.	1	1482522	0	G	T	consensus_score=84.1	frequency=1	major_base=T	major_cov=12/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/21
RA	6551	.	1	1482531	0	C	T	consensus_score=78.7	frequency=1	major_base=T	major_cov=11/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/20
RA	6552	.	1	1482546	0	T	C	consensus_score=82.5	frequency=1	major_base=C	major_cov=10/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/20
RA	6553	.	1	1482547	0	C	T	consensus_score=76.6	frequency=1	major_base=T	major_cov=10/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/20
RA	6554	.	1	1482564	0	T	C	consensus_score=69.5	frequency=1	major_base=C	major_cov=10/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/17
RA	6555	.	1	1482567	0	G	A	consensus_score=74.3	frequency=1	major_base=A	major_cov=10/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/17
RA	6556	.	1	1482615	0	T	C	consensus_score=33.4	frequency=1	major_base=C	major_cov=6/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/8
RA	6557	.	1	1482618	0	T	C	consensus_score=33.3	frequency=1	major_base=C	major_cov=6/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/8
RA	6558	.	1	1482621	0	G	A	consensus_score=32.3	frequency=1	major_base=A	major_cov=6/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/8
RA	6559	.	1	1482637	0	G	A	consensus_score=31.9	frequency=1	major_base=A	major_cov=6/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/8
RA	6560	.	1	1482659	0	G	A	consensus_score=29.8	frequency=1	major_base=A	major_cov=6/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/7
RA	6561	.	1	1482683	0	G	A	consensus_score=27.8	frequency=1	major_base=A	major_cov=5/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/7
RA	6562	.	1	1482687	0	T	C	consensus_score=24.8	frequency=1	major_base=C	major_cov=4/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/7
RA	6563	.	1	1482693	0	G	T	consensus_score=26.3	frequency=1	major_base=T	major_cov=4/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/7
RA	6564	.	1	1482708	0	G	A	consensus_score=24.6	frequency=1	major_base=A	major_cov=4/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/7
RA	6565	.	1	1482714	0	C	T	consensus_score=24.5	frequency=1	major_base=T	major_cov=4/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/7
RA	6566	.	1	1482726	0	C	T	consensus_score=22.9	frequency=1	major_base=T	major_cov=4/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/6
RA	6567	.	1	1482732	0	C	T	consensus_score=17.1	frequency=1	major_base=T	major_cov=3/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/5
RA	6568	.	1	1482735	0	C	T	consensus_score=17.5	frequency=1	major_base=T	major_cov=3/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/5
RA	6569	.	1	1482738	0	T	C	consensus_score=17.3	frequency=1	major_base=C	major_cov=3/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/5
RA	6570	.	1	1482739	0	G	A	consensus_score=16.8	frequency=1	major_base=A	major_cov=3/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/5
RA	6571	.	1	1482741	0	C	T	consensus_score=16.3	frequency=1	major_base=T	major_cov=3/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/5
RA	6572	.	1	1482762	0	T	C	consensus_score=17.2	frequency=1	major_base=C	major_cov=2/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=2/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=2/6
RA	6573	.	1	1482771	0	C	A	consensus_score=13.4	frequency=1	major_base=A	major_cov=2/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=2/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=2/5
RA	6574	.	1	1482789	0	A	G	consensus_score=19.9	frequency=1	major_base=G	major_cov=3/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/6
RA	6575	.	1	1482790	0	A	T	consensus_score=18.1	frequency=1	major_base=T	major_cov=3/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/6
RA	6576	.	1	1482792	0	G	A	consensus_score=19.7	frequency=1	major_base=A	major_cov=3/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/6
RA	6577	.	1	1482796	0	T	G	consensus_score=19.8	frequency=1	major_base=G	major_cov=3/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/6
RA	6578	.	1	1482813	0	C	T	consensus_score=30.6	frequency=1	major_base=T	major_cov=4/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/9
RA	6579	.	1	1482816	0	A	G	consensus_score=31.7	frequency=1	major_base=G	major_cov=4/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/9
RA	6580	.	1	1482825	0	A	C	consensus_score=25.1	frequency=1	major_base=C	major_cov=3/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/8
RA	6581	.	1	1482831	0	T	C	consensus_score=23.5	frequency=1	major_base=C	major_cov=3/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/7
RA	6582	.	1	1482837	0	T	C	consensus_score=24.5	frequency=1	major_base=C	major_cov=3/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/8
RA	6583	.	1	1482856	0	G	A	consensus_score=36.4	frequency=1	major_base=A	major_cov=6/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/9
RA	6584	.	1	1482861	0	C	T	consensus_score=35.6	frequency=1	major_base=T	major_cov=6/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/9
RA	6585	.	1	1482864	0	G	T	consensus_score=33.6	frequency=1	major_base=T	major_cov=6/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/9
RA	6586	.	1	1482866	0	A	T	consensus_score=34.2	frequency=1	major_base=T	major_cov=6/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/9
RA	6587	.	1	1482868	0	A	G	consensus_score=38.8	frequency=1	major_base=G	major_cov=6/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/9
RA	6588	.	1	1482876	0	C	T	consensus_score=41.0	frequency=1	major_base=T	major_cov=7/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/10
RA	6589	.	1	1482891	0	C	T	consensus_score=42.0	frequency=1	major_base=T	major_cov=7/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/11
RA	6590	.	1	1482892	0	A	G	consensus_score=47.4	frequency=1	major_base=G	major_cov=7/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/11
RA	6591	.	1	1482897	0	A	G	consensus_score=47.4	frequency=1	major_base=G	major_cov=7/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/11
RA	6592	.	1	1482900	0	T	C	consensus_score=47.8	frequency=1	major_base=C	major_cov=7/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/11
RA	6593	.	1	1482921	0	T	G	consensus_score=85.9	frequency=1	major_base=G	major_cov=16/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/15
RA	6594	.	1	1482940	0	T	C	consensus_score=97.5	frequency=1	major_base=C	major_cov=18/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/17
RA	6595	.	1	1482984	0	G	A	consensus_score=98.3	frequency=1	major_base=A	major_cov=21/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/17
RA	6596	.	1	1482996	0	G	A	consensus_score=97.3	frequency=1	major_base=A	major_cov=20/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/18
RA	6597	.	1	1483008	0	T	C	consensus_score=111.5	frequency=1	major_base=C	major_cov=21/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/19
RA	6598	.	1	1483018	0	T	A	consensus_score=102.3	frequency=1	major_base=A	major_cov=21/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/18
RA	6599	.	1	1483035	0	G	A	consensus_score=108.7	frequency=1	major_base=A	major_cov=19/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/22
RA	6600	.	1	1483039	0	A	G	consensus_score=110.3	frequency=1	major_base=G	major_cov=18/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/21
RA	6601	.	1	1483046	0	C	T	consensus_score=112.5	frequency=1	major_base=T	major_cov=20/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/24
RA	6602	.	1	1483094	0	C	T	consensus_score=138.4	frequency=1	major_base=T	major_cov=24/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/28
RA	6603	.	1	1483096	0	A	G	consensus_score=148.0	frequency=1	major_base=G	major_cov=24/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/28
RA	6604	.	1	1483099	0	T	C	consensus_score=147.9	frequency=1	major_base=C	major_cov=24/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/28
RA	6605	.	1	1483109	0	A	G	consensus_score=179.4	frequency=1	major_base=G	major_cov=29/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/33
RA	6606	.	1	1483148	0	C	T	bias_e_value=2103060	bias_p_value=1	consensus_score=143.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999327	major_base=T	major_cov=22/32	major_frequency=9.818e-01	minor_base=A	minor_cov=0/1	new_cov=22/32	polymorphism_frequency=9.818e-01	polymorphism_score=-3.9	prediction=consensus	ref_cov=0/0	total_cov=22/33
RA	6607	.	1	1483150	0	G	A	consensus_score=145.8	frequency=1	major_base=A	major_cov=22/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/33
RA	6608	.	1	1483177	0	C	T	consensus_score=169.9	frequency=1	major_base=T	major_cov=25/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/35
RA	6609	.	1	1483181	0	G	A	consensus_score=143.6	frequency=1	major_base=A	major_cov=23/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/31
RA	6610	.	1	1483195	0	C	T	consensus_score=123.5	frequency=1	major_base=T	major_cov=20/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/27
RA	6611	.	1	1483196	0	G	A	consensus_score=124.9	frequency=1	major_base=A	major_cov=20/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/27
RA	6612	.	1	1483197	0	G	A	consensus_score=123.9	frequency=1	major_base=A	major_cov=20/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/27
RA	6613	.	1	1483198	0	T	C	consensus_score=133.9	frequency=1	major_base=C	major_cov=20/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/27
RA	6614	.	1	1483199	0	G	A	bias_e_value=2103040	bias_p_value=0.999993	consensus_score=119.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.996307	major_base=A	major_cov=20/26	major_frequency=9.787e-01	minor_base=T	minor_cov=0/1	new_cov=20/26	polymorphism_frequency=9.787e-01	polymorphism_score=-5.7	prediction=consensus	ref_cov=0/0	total_cov=20/27
RA	6615	.	1	1483210	0	C	G	consensus_score=146.1	frequency=1	major_base=G	major_cov=24/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/29
RA	6616	.	1	1483214	0	G	T	consensus_score=149.7	frequency=1	major_base=T	major_cov=24/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/29
RA	6617	.	1	1483220	0	A	G	consensus_score=145.3	frequency=1	major_base=G	major_cov=24/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/29
RA	6618	.	1	1483222	0	T	A	bias_e_value=2103060	bias_p_value=1	consensus_score=136.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=24/28	major_frequency=9.811e-01	minor_base=G	minor_cov=0/1	new_cov=24/28	polymorphism_frequency=9.811e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/29
RA	6619	.	1	1483225	0	A	G	consensus_score=152.0	frequency=1	major_base=G	major_cov=24/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/29
RA	6620	.	1	1483267	0	A	T	consensus_score=166.2	frequency=1	major_base=T	major_cov=26/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/34
RA	6621	.	1	1483270	0	A	G	consensus_score=161.7	frequency=1	major_base=G	major_cov=26/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/34
RA	6622	.	1	1483276	0	A	G	consensus_score=167.7	frequency=1	major_base=G	major_cov=26/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/35
RA	6623	.	1	1483283	0	A	G	consensus_score=167.5	frequency=1	major_base=G	major_cov=24/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/35
RA	6624	.	1	1483309	0	T	C	consensus_score=167.7	frequency=1	major_base=C	major_cov=26/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/33
RA	6625	.	1	1483330	0	C	T	consensus_score=178.1	frequency=1	major_base=T	major_cov=30/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/35
RA	6626	.	1	1483348	0	T	C	consensus_score=170.9	frequency=1	major_base=C	major_cov=31/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/31
RA	6627	.	1	1483378	0	T	C	consensus_score=162.5	frequency=1	major_base=C	major_cov=31/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/28
RA	6628	.	1	1483435	0	C	T	consensus_score=208.9	frequency=1	major_base=T	major_cov=34/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/39
RA	6629	.	1	1483477	0	T	C	consensus_score=214.4	frequency=1	major_base=C	major_cov=33/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/45
RA	6630	.	1	1483483	0	C	T	consensus_score=234.1	frequency=1	major_base=T	major_cov=36/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/47
RA	6631	.	1	1483501	0	T	A	consensus_score=218.7	frequency=1	major_base=A	major_cov=35/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/46
RA	6632	.	1	1483516	0	A	G	consensus_score=238.0	frequency=1	major_base=G	major_cov=33/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/52
RA	6633	.	1	1483525	0	C	T	consensus_score=233.2	frequency=1	major_base=T	major_cov=36/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/50
RA	6634	.	1	1483537	0	T	C	consensus_score=257.6	frequency=1	major_base=C	major_cov=39/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/50
RA	6635	.	1	1483546	0	A	G	consensus_score=258.5	frequency=1	major_base=G	major_cov=36/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/54
RA	6636	.	1	1483557	0	A	G	consensus_score=250.0	frequency=1	major_base=G	major_cov=33/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/54
RA	6637	.	1	1483566	0	C	G	consensus_score=233.8	frequency=1	major_base=G	major_cov=34/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/50
RA	6638	.	1	1483567	0	A	C	consensus_score=244.3	frequency=1	major_base=C	major_cov=34/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/50
RA	6639	.	1	1483588	0	T	C	consensus_score=231.9	frequency=1	major_base=C	major_cov=34/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/50
RA	6640	.	1	1483600	0	T	C	consensus_score=242.4	frequency=1	major_base=C	major_cov=36/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/52
RA	6641	.	1	1483606	0	A	T	consensus_score=238.1	frequency=1	major_base=T	major_cov=36/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/52
RA	6642	.	1	1483612	0	G	A	consensus_score=239.3	frequency=1	major_base=A	major_cov=36/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/53
RA	6643	.	1	1483618	0	C	T	consensus_score=243.2	frequency=1	major_base=T	major_cov=36/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/55
RA	6644	.	1	1483627	0	T	C	consensus_score=255.3	frequency=1	major_base=C	major_cov=34/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/58
RA	6645	.	1	1483639	0	C	T	consensus_score=241.2	frequency=1	major_base=T	major_cov=34/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/56
RA	6646	.	1	1483642	0	G	A	consensus_score=248.7	frequency=1	major_base=A	major_cov=34/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/56
RA	6647	.	1	1483675	0	T	C	consensus_score=235.9	frequency=1	major_base=C	major_cov=38/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/47
RA	6648	.	1	1483687	0	C	T	consensus_score=207.6	frequency=1	major_base=T	major_cov=34/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/42
RA	6649	.	1	1483688	0	T	C	consensus_score=220.5	frequency=1	major_base=C	major_cov=34/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/42
RA	6650	.	1	1483690	0	A	C	consensus_score=218.3	frequency=1	major_base=C	major_cov=34/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/42
RA	6651	.	1	1483708	0	C	T	consensus_score=200.5	frequency=1	major_base=T	major_cov=35/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/39
RA	6652	.	1	1483739	0	C	T	consensus_score=206.0	frequency=1	major_base=T	major_cov=35/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/42
RA	6653	.	1	1483753	0	C	T	consensus_score=207.0	frequency=1	major_base=T	major_cov=38/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/39
RA	6654	.	1	1483756	0	G	A	consensus_score=213.4	frequency=1	major_base=A	major_cov=38/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/39
RA	6655	.	1	1483757	0	C	T	consensus_score=217.7	frequency=1	major_base=T	major_cov=38/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/39
RA	6656	.	1	1483771	0	G	A	consensus_score=215.5	frequency=1	major_base=A	major_cov=35/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/45
RA	6657	.	1	1483789	0	G	T	consensus_score=216.3	frequency=1	major_base=T	major_cov=36/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/43
RA	6658	.	1	1483795	0	G	A	consensus_score=213.2	frequency=1	major_base=A	major_cov=38/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/41
RA	6659	.	1	1483825	0	A	G	consensus_score=225.9	frequency=1	major_base=G	major_cov=36/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/45
RA	6660	.	1	1483837	0	A	G	consensus_score=229.1	frequency=1	major_base=G	major_cov=34/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/45
RA	6661	.	1	1483840	0	C	T	consensus_score=211.4	frequency=1	major_base=T	major_cov=34/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/45
RA	6662	.	1	1483856	0	T	C	consensus_score=224.2	frequency=1	major_base=C	major_cov=35/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/43
RA	6663	.	1	1483858	0	G	A	consensus_score=209.9	frequency=1	major_base=A	major_cov=35/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/43
RA	6664	.	1	1483882	0	T	C	consensus_score=201.0	frequency=1	major_base=C	major_cov=31/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/42
RA	6665	.	1	1483885	0	G	A	consensus_score=200.8	frequency=1	major_base=A	major_cov=31/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/42
RA	6666	.	1	1483888	0	C	T	consensus_score=195.2	frequency=1	major_base=T	major_cov=31/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/42
RA	6667	.	1	1483915	0	A	G	consensus_score=246.0	frequency=1	major_base=G	major_cov=39/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/46
RA	6668	.	1	1483927	0	A	G	consensus_score=221.4	frequency=1	major_base=G	major_cov=38/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/42
RA	6669	.	1	1483933	0	T	C	consensus_score=216.0	frequency=1	major_base=C	major_cov=35/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/40
RA	6670	.	1	1483936	0	C	T	consensus_score=202.2	frequency=1	major_base=T	major_cov=35/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/40
RA	6671	.	1	1483974	0	G	C	consensus_score=182.0	frequency=1	major_base=C	major_cov=30/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/36
RA	6672	.	1	1483981	0	C	G	consensus_score=171.6	frequency=1	major_base=G	major_cov=28/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/34
RA	6673	.	1	1483996	0	C	A	consensus_score=149.2	frequency=1	major_base=A	major_cov=26/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/30
RA	6674	.	1	1484002	0	A	G	bias_e_value=1591460	bias_p_value=0.756735	consensus_score=137.8	fisher_strand_p_value=0.48	frequency=1	ks_quality_p_value=0.811412	major_base=G	major_cov=23/26	major_frequency=9.800e-01	minor_base=A	minor_cov=1/0	new_cov=23/26	polymorphism_frequency=9.800e-01	polymorphism_score=-5.2	prediction=consensus	ref_cov=1/0	total_cov=24/26
RA	6675	.	1	1484026	0	A	G	bias_e_value=2101760	bias_p_value=0.999382	consensus_score=93.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.965063	major_base=G	major_cov=18/19	major_frequency=9.737e-01	minor_base=A	minor_cov=1/0	new_cov=18/19	polymorphism_frequency=9.737e-01	polymorphism_score=-4.7	prediction=consensus	ref_cov=1/0	total_cov=19/19
RA	6676	.	1	1484038	0	A	G	consensus_score=91.1	frequency=1	major_base=G	major_cov=16/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/18
RA	6677	.	1	1484041	0	G	A	bias_e_value=1735660	bias_p_value=0.825304	consensus_score=82.7	fisher_strand_p_value=0.470588	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=15/18	major_frequency=9.706e-01	minor_base=G	minor_cov=1/0	new_cov=15/18	polymorphism_frequency=9.706e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=1/0	total_cov=16/18
RA	6678	.	1	1484059	0	C	T	consensus_score=46.1	frequency=1	major_base=T	major_cov=13/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/6
RA	6679	.	1	1484060	0	T	G	bias_e_value=2102490	bias_p_value=0.999731	consensus_score=48.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.97688	major_base=G	major_cov=12/6	major_frequency=9.474e-01	minor_base=T	minor_cov=1/0	new_cov=12/6	polymorphism_frequency=9.474e-01	polymorphism_score=-3.4	prediction=consensus	ref_cov=1/0	total_cov=13/6
RA	6680	.	1	1484062	0	T	A	bias_e_value=2103060	bias_p_value=1	consensus_score=42.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=12/6	major_frequency=9.474e-01	minor_base=T	minor_cov=1/0	new_cov=12/6	polymorphism_frequency=9.474e-01	polymorphism_score=-3.1	prediction=consensus	ref_cov=1/0	total_cov=13/6
RA	6681	.	1	1484065	0	A	T	bias_e_value=2103060	bias_p_value=1	consensus_score=43.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=12/6	major_frequency=9.474e-01	minor_base=A	minor_cov=1/0	new_cov=12/6	polymorphism_frequency=9.474e-01	polymorphism_score=-3.2	prediction=consensus	ref_cov=1/0	total_cov=13/6
RA	6682	.	1	1484074	0	C	T	bias_e_value=2100240	bias_p_value=0.998663	consensus_score=40.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.948729	major_base=T	major_cov=12/6	major_frequency=9.474e-01	minor_base=C	minor_cov=1/0	new_cov=12/6	polymorphism_frequency=9.474e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=1/0	total_cov=13/6
RA	6683	.	1	1484077	0	A	C	bias_e_value=2103020	bias_p_value=0.999983	consensus_score=45.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.994169	major_base=C	major_cov=12/6	major_frequency=9.474e-01	minor_base=A	minor_cov=1/0	new_cov=12/6	polymorphism_frequency=9.474e-01	polymorphism_score=-5.5	prediction=consensus	ref_cov=1/0	total_cov=13/6
RA	6684	.	1	1484080	0	A	C	bias_e_value=2102490	bias_p_value=0.999731	consensus_score=45.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.97688	major_base=C	major_cov=12/6	major_frequency=9.474e-01	minor_base=A	minor_cov=1/0	new_cov=12/6	polymorphism_frequency=9.474e-01	polymorphism_score=-3.6	prediction=consensus	ref_cov=1/0	total_cov=13/6
RA	6685	.	1	1484083	0	G	A	bias_e_value=2102490	bias_p_value=0.999731	consensus_score=37.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.97688	major_base=A	major_cov=12/6	major_frequency=9.474e-01	minor_base=G	minor_cov=1/0	new_cov=12/6	polymorphism_frequency=9.474e-01	polymorphism_score=-4.8	prediction=consensus	ref_cov=1/0	total_cov=13/6
RA	6686	.	1	1484086	0	G	A	bias_e_value=2062500	bias_p_value=0.980717	consensus_score=40.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.810158	major_base=A	major_cov=12/6	major_frequency=9.474e-01	minor_base=G	minor_cov=1/0	new_cov=12/6	polymorphism_frequency=9.474e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=1/0	total_cov=13/6
RA	6687	.	1	1484089	0	G	C	bias_e_value=2102490	bias_p_value=0.999731	consensus_score=44.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.97688	major_base=C	major_cov=12/6	major_frequency=9.474e-01	minor_base=G	minor_cov=1/0	new_cov=12/6	polymorphism_frequency=9.474e-01	polymorphism_score=-3.6	prediction=consensus	ref_cov=1/0	total_cov=13/6
RA	6688	.	1	1484107	0	T	A	bias_e_value=2103020	bias_p_value=0.999983	consensus_score=43.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.994169	major_base=A	major_cov=12/6	major_frequency=9.474e-01	minor_base=T	minor_cov=1/0	new_cov=12/6	polymorphism_frequency=9.474e-01	polymorphism_score=-3.1	prediction=consensus	ref_cov=1/0	total_cov=13/6
RA	6689	.	1	1484108	0	T	A	bias_e_value=2094410	bias_p_value=0.995886	consensus_score=41.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.910677	major_base=A	major_cov=12/6	major_frequency=9.474e-01	minor_base=T	minor_cov=1/0	new_cov=12/6	polymorphism_frequency=9.474e-01	polymorphism_score=-3.1	prediction=consensus	ref_cov=1/0	total_cov=13/6
RA	6690	.	1	1484119	0	T	C	bias_e_value=2102170	bias_p_value=0.999576	consensus_score=37.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.971017	major_base=C	major_cov=12/4	major_frequency=9.412e-01	minor_base=T	minor_cov=1/0	new_cov=12/4	polymorphism_frequency=9.412e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=1/0	total_cov=13/4
RA	6691	.	1	1484128	0	C	T	bias_e_value=2103060	bias_p_value=1	consensus_score=22.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=8/3	major_frequency=9.167e-01	minor_base=C	minor_cov=1/0	new_cov=8/3	polymorphism_frequency=9.167e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=1/0	total_cov=9/3
RA	6692	.	1	1484134	0	G	A	consensus_score=25.2	frequency=1	major_base=A	major_cov=8/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/3
RA	6693	.	1	1484135	0	G	A	bias_e_value=2103060	bias_p_value=1	consensus_score=19.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=7/3	major_frequency=9.091e-01	minor_base=G	minor_cov=1/0	new_cov=7/3	polymorphism_frequency=9.091e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=1/0	total_cov=8/3
RA	6694	.	1	1484137	0	T	A	bias_e_value=2103060	bias_p_value=1	consensus_score=21.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=7/3	major_frequency=9.091e-01	minor_base=T	minor_cov=1/0	new_cov=7/3	polymorphism_frequency=9.091e-01	polymorphism_score=-4.9	prediction=consensus	ref_cov=1/0	total_cov=8/3
RA	6695	.	1	1484143	0	A	T	bias_e_value=2029580	bias_p_value=0.965063	consensus_score=21.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.747584	major_base=T	major_cov=7/3	major_frequency=9.091e-01	minor_base=A	minor_cov=1/0	new_cov=7/3	polymorphism_frequency=9.091e-01	polymorphism_score=-2.9	prediction=consensus	ref_cov=1/0	total_cov=8/3
RA	6696	.	1	1484152	0	C	T	bias_e_value=2101750	bias_p_value=0.999377	consensus_score=10.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.964916	major_base=T	major_cov=6/1	major_frequency=8.750e-01	minor_base=C	minor_cov=1/0	new_cov=6/1	polymorphism_frequency=8.750e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=1/0	total_cov=7/1
RA	6697	.	1	1484155	0	T	G	bias_e_value=2103060	bias_p_value=1	consensus_score=14.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=6/1	major_frequency=8.750e-01	minor_base=T	minor_cov=1/0	new_cov=6/1	polymorphism_frequency=8.750e-01	polymorphism_score=-3.2	prediction=consensus	ref_cov=1/0	total_cov=7/1
RA	6698	.	1	1484170	0	G	A	consensus_score=14.8	frequency=1	major_base=A	major_cov=6/1	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/1	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/1
RA	6699	.	1	1484176	0	A	T	bias_e_value=1400790	bias_p_value=0.666072	consensus_score=10.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.304076	major_base=T	major_cov=5/1	major_frequency=8.571e-01	minor_base=A	minor_cov=1/0	new_cov=5/1	polymorphism_frequency=8.571e-01	polymorphism_score=-2.7	prediction=consensus	ref_cov=1/0	total_cov=6/1
RA	6700	.	1	1484212	0	G	T	bias_e_value=2015120	bias_p_value=0.958184	consensus_score=13.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.725112	major_base=T	major_cov=5/2	major_frequency=8.750e-01	minor_base=G	minor_cov=1/0	new_cov=5/2	polymorphism_frequency=8.750e-01	polymorphism_score=-3.4	prediction=consensus	ref_cov=1/0	total_cov=6/2
RA	6701	.	1	1484215	0	T	C	bias_e_value=2101750	bias_p_value=0.999377	consensus_score=10.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.964916	major_base=C	major_cov=5/2	major_frequency=8.750e-01	minor_base=T	minor_cov=1/0	new_cov=5/2	polymorphism_frequency=8.750e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=1/0	total_cov=6/2
RA	6702	.	1	1484222	0	C	A	bias_e_value=2101750	bias_p_value=0.999377	consensus_score=12.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.964916	major_base=A	major_cov=5/2	major_frequency=8.750e-01	minor_base=C	minor_cov=1/0	new_cov=5/2	polymorphism_frequency=8.750e-01	polymorphism_score=-3.2	prediction=consensus	ref_cov=1/0	total_cov=6/2
RA	6703	.	1	1484234	0	A	G	bias_e_value=2103060	bias_p_value=1	consensus_score=11.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=5/2	major_frequency=8.750e-01	minor_base=A	minor_cov=1/0	new_cov=5/2	polymorphism_frequency=8.750e-01	polymorphism_score=-3.9	prediction=consensus	ref_cov=1/0	total_cov=6/2
RA	6704	.	1	1484239	0	T	C	bias_e_value=2101750	bias_p_value=0.999377	consensus_score=12.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.964916	major_base=C	major_cov=5/2	major_frequency=8.750e-01	minor_base=T	minor_cov=1/0	new_cov=5/2	polymorphism_frequency=8.750e-01	polymorphism_score=-3.9	prediction=consensus	ref_cov=1/0	total_cov=6/2
RA	6705	.	1	1484242	0	C	T	bias_e_value=2101750	bias_p_value=0.999377	consensus_score=10.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.964916	major_base=T	major_cov=5/2	major_frequency=8.750e-01	minor_base=C	minor_cov=1/0	new_cov=5/2	polymorphism_frequency=8.750e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=1/0	total_cov=6/2
RA	6706	.	1	1484245	0	A	T	bias_e_value=2103060	bias_p_value=1	consensus_score=12.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=5/2	major_frequency=8.750e-01	minor_base=A	minor_cov=1/0	new_cov=5/2	polymorphism_frequency=8.750e-01	polymorphism_score=-2.8	prediction=consensus	ref_cov=1/0	total_cov=6/2
RA	6707	.	1	1484246	0	C	T	bias_e_value=2083540	bias_p_value=0.990718	consensus_score=10.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.866878	major_base=T	major_cov=5/2	major_frequency=8.750e-01	minor_base=C	minor_cov=1/0	new_cov=5/2	polymorphism_frequency=8.750e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=1/0	total_cov=6/2
RA	6708	.	1	1484249	0	C	T	bias_e_value=2101750	bias_p_value=0.999377	consensus_score=10.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.964916	major_base=T	major_cov=5/2	major_frequency=8.750e-01	minor_base=C	minor_cov=1/0	new_cov=5/2	polymorphism_frequency=8.750e-01	polymorphism_score=-3.8	prediction=consensus	ref_cov=1/0	total_cov=6/2
RA	6709	.	1	1484257	0	T	C	consensus_score=12.7	frequency=1	major_base=C	major_cov=5/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/2
RA	6710	.	1	1484262	0	T	C	consensus_score=14.7	frequency=1	major_base=C	major_cov=5/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/2
RA	6711	.	1	1484266	0	A	T	consensus_score=13.1	frequency=1	major_base=T	major_cov=5/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/2
RA	6712	.	1	1484287	0	C	T	consensus_score=15.8	frequency=1	major_base=T	major_cov=5/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/3
RA	6713	.	1	1484297	0	G	A	consensus_score=17.3	frequency=1	major_base=A	major_cov=6/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/3
RA	6714	.	1	1484302	0	A	G	consensus_score=20.4	frequency=1	major_base=G	major_cov=6/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/3
RA	6715	.	1	1484303	0	C	T	consensus_score=18.7	frequency=1	major_base=T	major_cov=6/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/3
RA	6716	.	1	1484314	0	C	T	consensus_score=25.7	frequency=1	major_base=T	major_cov=7/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/4
RA	6717	.	1	1484331	0	A	G	consensus_score=26.2	frequency=1	major_base=G	major_cov=7/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/4
RA	6718	.	1	1484336	0	A	G	consensus_score=25.8	frequency=1	major_base=G	major_cov=7/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/4
RA	6719	.	1	1484337	0	T	C	consensus_score=26.1	frequency=1	major_base=C	major_cov=7/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/4
RA	6720	.	1	1484338	0	T	C	consensus_score=26.5	frequency=1	major_base=C	major_cov=7/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/4
RA	6721	.	1	1484346	0	G	A	consensus_score=31.9	frequency=1	major_base=A	major_cov=9/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/5
RA	6722	.	1	1484361	0	A	T	consensus_score=37.4	frequency=1	major_base=T	major_cov=9/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/7
RA	6723	.	1	1484373	0	G	A	consensus_score=39.9	frequency=1	major_base=A	major_cov=10/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/7
RA	6724	.	1	1484376	0	G	A	consensus_score=39.1	frequency=1	major_base=A	major_cov=10/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/7
RA	6725	.	1	1484409	0	C	T	consensus_score=54.3	frequency=1	major_base=T	major_cov=12/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/10
RA	6726	.	1	1484443	0	G	A	consensus_score=49.4	frequency=1	major_base=A	major_cov=10/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/10
RA	6727	.	1	1484451	0	A	G	consensus_score=53.2	frequency=1	major_base=G	major_cov=12/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/8
RA	6728	.	1	1484471	0	G	A	consensus_score=47.6	frequency=1	major_base=A	major_cov=12/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/8
RA	6729	.	1	1484485	0	A	G	consensus_score=54.3	frequency=1	major_base=G	major_cov=12/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/8
RA	6730	.	1	1484525	0	G	A	consensus_score=51.4	frequency=1	major_base=A	major_cov=11/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/10
RA	6731	.	1	1484532	0	G	A	consensus_score=49.6	frequency=1	major_base=A	major_cov=11/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/9
RA	6732	.	1	1484533	0	A	G	consensus_score=52.8	frequency=1	major_base=G	major_cov=11/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/9
RA	6733	.	1	1484538	0	C	T	consensus_score=52.5	frequency=1	major_base=T	major_cov=12/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/9
RA	6734	.	1	1484607	0	T	C	consensus_score=100.4	frequency=1	major_base=C	major_cov=16/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/22
RA	6735	.	1	1484706	0	G	A	consensus_score=139.2	frequency=1	major_base=A	major_cov=26/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/27
RA	6736	.	1	1484730	0	A	T	consensus_score=130.3	frequency=1	major_base=T	major_cov=25/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/24
RA	6737	.	1	1484733	0	G	A	consensus_score=127.2	frequency=1	major_base=A	major_cov=25/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/24
RA	6738	.	1	1484742	0	A	T	consensus_score=119.4	frequency=1	major_base=T	major_cov=22/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/21
RA	6739	.	1	1484743	0	G	A	consensus_score=113.9	frequency=1	major_base=A	major_cov=22/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/21
RA	6740	.	1	1484745	0	T	C	consensus_score=116.7	frequency=1	major_base=C	major_cov=22/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/21
RA	6741	.	1	1484747	0	C	T	consensus_score=113.7	frequency=1	major_base=T	major_cov=22/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/21
RA	6742	.	1	1484748	0	T	A	consensus_score=119.6	frequency=1	major_base=A	major_cov=22/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/21
RA	6743	.	1	1484760	0	A	G	consensus_score=128.2	frequency=1	major_base=G	major_cov=24/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/21
RA	6744	.	1	1484766	0	A	G	consensus_score=128.6	frequency=1	major_base=G	major_cov=24/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/21
RA	6745	.	1	1484772	0	C	T	bias_e_value=2100330	bias_p_value=0.998704	consensus_score=119.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.949522	major_base=T	major_cov=22/21	major_frequency=9.773e-01	minor_base=A	minor_cov=1/0	new_cov=22/21	polymorphism_frequency=9.773e-01	polymorphism_score=-3.6	prediction=consensus	ref_cov=0/0	total_cov=23/21
RA	6746	.	1	1484787	0	T	A	consensus_score=98.4	frequency=1	major_base=A	major_cov=22/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/16
RA	6747	.	1	1484790	0	C	A	consensus_score=99.6	frequency=1	major_base=A	major_cov=22/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/16
RA	6748	.	1	1484802	0	T	C	consensus_score=88.4	frequency=1	major_base=C	major_cov=19/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/14
RA	6749	.	1	1484811	0	T	C	consensus_score=91.3	frequency=1	major_base=C	major_cov=19/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/14
RA	6750	.	1	1484814	0	G	A	consensus_score=86.2	frequency=1	major_base=A	major_cov=19/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/14
RA	6751	.	1	1484820	0	C	T	consensus_score=86.5	frequency=1	major_base=T	major_cov=19/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/14
RA	6752	.	1	1484825	0	A	G	consensus_score=46.5	frequency=1	major_base=G	major_cov=11/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/7
RA	6753	.	1	1484826	0	G	A	consensus_score=43.9	frequency=1	major_base=A	major_cov=11/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/7
RA	6754	.	1	1484829	0	T	C	consensus_score=43.9	frequency=1	major_base=C	major_cov=11/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/7
RA	6755	.	1	1484830	0	A	C	consensus_score=44.3	frequency=1	major_base=C	major_cov=11/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/7
RA	6756	.	1	1484832	0	T	C	consensus_score=46.8	frequency=1	major_base=C	major_cov=11/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/7
RA	6757	.	1	1484833	0	G	T	consensus_score=42.9	frequency=1	major_base=T	major_cov=11/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/7
RA	6758	.	1	1484835	0	A	T	consensus_score=42.9	frequency=1	major_base=T	major_cov=11/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/7
RA	6759	.	1	1484841	0	C	G	consensus_score=48.3	frequency=1	major_base=G	major_cov=11/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/7
RA	6760	.	1	1484847	0	T	C	consensus_score=45.3	frequency=1	major_base=C	major_cov=11/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/7
RA	6761	.	1	1484850	0	T	C	consensus_score=44.0	frequency=1	major_base=C	major_cov=11/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/7
RA	6762	.	1	1484852	0	T	C	consensus_score=44.8	frequency=1	major_base=C	major_cov=11/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/7
RA	6763	.	1	1484854	0	T	A	consensus_score=47.0	frequency=1	major_base=A	major_cov=11/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/7
RA	6764	.	1	1484865	0	A	C	consensus_score=65.5	frequency=1	major_base=C	major_cov=15/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/10
RA	6765	.	1	1484868	0	C	T	consensus_score=65.4	frequency=1	major_base=T	major_cov=15/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/10
RA	6766	.	1	1484895	0	A	G	consensus_score=100.1	frequency=1	major_base=G	major_cov=20/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/16
RA	6767	.	1	1484898	0	C	T	consensus_score=94.5	frequency=1	major_base=T	major_cov=20/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/16
RA	6768	.	1	1484901	0	T	C	consensus_score=97.4	frequency=1	major_base=C	major_cov=20/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/16
RA	6769	.	1	1484904	0	C	T	consensus_score=94.6	frequency=1	major_base=T	major_cov=20/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/16
RA	6770	.	1	1484925	0	C	T	consensus_score=119.7	frequency=1	major_base=T	major_cov=22/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/22
RA	6771	.	1	1484928	0	C	T	consensus_score=117.3	frequency=1	major_base=T	major_cov=22/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/22
RA	6772	.	1	1484933	0	G	A	consensus_score=111.9	frequency=1	major_base=A	major_cov=21/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/21
RA	6773	.	1	1484934	0	T	C	consensus_score=117.8	frequency=1	major_base=C	major_cov=21/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/21
RA	6774	.	1	1484940	0	C	T	consensus_score=144.1	frequency=1	major_base=T	major_cov=31/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/22
RA	6775	.	1	1484952	0	C	G	consensus_score=188.4	frequency=1	major_base=G	major_cov=42/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/27
RA	6776	.	1	1484964	0	C	T	consensus_score=209.9	frequency=1	major_base=T	major_cov=41/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/33
RA	6777	.	1	1484976	0	T	C	bias_e_value=1089410	bias_p_value=0.518012	consensus_score=201.9	fisher_strand_p_value=0.198135	frequency=1	ks_quality_p_value=0.997305	major_base=C	major_cov=43/33	major_frequency=9.744e-01	minor_base=T	minor_cov=0/2	new_cov=43/33	polymorphism_frequency=9.744e-01	polymorphism_score=-5.8	prediction=consensus	ref_cov=0/2	total_cov=43/35
RA	6778	.	1	1484985	0	C	G	consensus_score=243.6	frequency=1	major_base=G	major_cov=49/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/39
RA	6779	.	1	1485003	0	G	A	consensus_score=261.6	frequency=1	major_base=A	major_cov=49/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/48
RA	6780	.	1	1485033	0	T	C	consensus_score=292.9	frequency=1	major_base=C	major_cov=51/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/51
RA	6781	.	1	1485051	0	T	C	consensus_score=286.0	frequency=1	major_base=C	major_cov=51/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/52
RA	6782	.	1	1485057	0	G	A	consensus_score=275.5	frequency=1	major_base=A	major_cov=51/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/51
RA	6783	.	1	1485066	0	T	G	consensus_score=281.3	frequency=1	major_base=G	major_cov=53/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/50
RA	6784	.	1	1485090	0	A	G	consensus_score=302.0	frequency=1	major_base=G	major_cov=51/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/52
RA	6785	.	1	1485165	0	C	T	consensus_score=225.9	frequency=1	major_base=T	major_cov=42/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/42
RA	6786	.	1	1485171	0	A	G	consensus_score=237.5	frequency=1	major_base=G	major_cov=40/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/42
RA	6787	.	1	1485189	0	C	T	consensus_score=183.0	frequency=1	major_base=T	major_cov=31/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/38
RA	6788	.	1	1485221	0	G	A	consensus_score=158.7	frequency=1	major_base=A	major_cov=26/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/33
RA	6789	.	1	1485227	0	A	G	consensus_score=154.1	frequency=1	major_base=G	major_cov=24/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/30
RA	6790	.	1	1485234	0	T	C	consensus_score=121.1	frequency=1	major_base=C	major_cov=20/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/23
RA	6791	.	1	1485236	0	A	G	consensus_score=122.0	frequency=1	major_base=G	major_cov=20/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/23
RA	6792	.	1	1485245	0	G	A	consensus_score=100.1	frequency=1	major_base=A	major_cov=20/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/18
RA	6793	.	1	1485246	0	C	T	consensus_score=96.9	frequency=1	major_base=T	major_cov=20/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/18
RA	6794	.	1	1485254	0	G	C	consensus_score=110.4	frequency=1	major_base=C	major_cov=20/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/19
RA	6795	.	1	1485264	0	A	G	consensus_score=80.4	frequency=1	major_base=G	major_cov=15/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/15
RA	6796	.	1	1485266	0	T	G	consensus_score=79.5	frequency=1	major_base=G	major_cov=15/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/15
RA	6797	.	1	1485267	0	A	T	consensus_score=75.3	frequency=1	major_base=T	major_cov=15/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/15
RA	6798	.	1	1485275	0	G	A	consensus_score=76.2	frequency=1	major_base=A	major_cov=15/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/15
RA	6799	.	1	1485279	0	G	T	consensus_score=75.7	frequency=1	major_base=T	major_cov=15/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/15
RA	6800	.	1	1485280	0	C	T	consensus_score=75.7	frequency=1	major_base=T	major_cov=15/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/15
RA	6801	.	1	1485281	0	C	G	consensus_score=79.1	frequency=1	major_base=G	major_cov=15/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/15
RA	6802	.	1	1485293	0	C	T	consensus_score=84.4	frequency=1	major_base=T	major_cov=16/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/17
RA	6803	.	1	1485298	0	A	G	consensus_score=88.2	frequency=1	major_base=G	major_cov=16/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/16
RA	6804	.	1	1485308	0	A	G	consensus_score=71.1	frequency=1	major_base=G	major_cov=14/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/12
RA	6805	.	1	1485309	0	T	C	consensus_score=71.3	frequency=1	major_base=C	major_cov=14/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/12
RA	6806	.	1	1485314	0	A	G	consensus_score=71.5	frequency=1	major_base=G	major_cov=14/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/12
RA	6807	.	1	1485317	0	G	A	consensus_score=64.9	frequency=1	major_base=A	major_cov=14/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/12
RA	6808	.	1	1485321	0	G	A	consensus_score=67.0	frequency=1	major_base=A	major_cov=14/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/12
RA	6809	.	1	1485351	0	G	A	consensus_score=42.0	frequency=1	major_base=A	major_cov=9/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/9
RA	6810	.	1	1485352	0	A	G	consensus_score=47.7	frequency=1	major_base=G	major_cov=9/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/9
RA	6811	.	1	1485355	0	G	A	bias_e_value=2103060	bias_p_value=1	consensus_score=37.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=9/8	major_frequency=9.444e-01	minor_base=G	minor_cov=0/1	new_cov=9/8	polymorphism_frequency=9.444e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=0/1	total_cov=9/9
RA	6812	.	1	1485359	0	C	T	consensus_score=43.3	frequency=1	major_base=T	major_cov=9/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/9
RA	6813	.	1	1485363	0	G	A	consensus_score=43.1	frequency=1	major_base=A	major_cov=9/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/9
RA	6814	.	1	1485368	0	T	C	consensus_score=48.2	frequency=1	major_base=C	major_cov=9/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/9
RA	6815	.	1	1485372	0	A	G	consensus_score=47.7	frequency=1	major_base=G	major_cov=9/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/9
RA	6816	.	1	1485373	0	A	G	consensus_score=47.6	frequency=1	major_base=G	major_cov=9/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/9
RA	6817	.	1	1485377	0	G	A	consensus_score=42.8	frequency=1	major_base=A	major_cov=9/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/9
RA	6818	.	1	1485383	0	A	G	consensus_score=47.5	frequency=1	major_base=G	major_cov=9/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/9
RA	6819	.	1	1485401	0	A	G	consensus_score=47.2	frequency=1	major_base=G	major_cov=10/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/8
RA	6820	.	1	1485404	0	A	G	consensus_score=47.6	frequency=1	major_base=G	major_cov=10/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/8
RA	6821	.	1	1485410	0	A	G	consensus_score=38.0	frequency=1	major_base=G	major_cov=10/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/5
RA	6822	.	1	1485416	0	T	C	consensus_score=31.3	frequency=1	major_base=C	major_cov=8/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/5
RA	6823	.	1	1485425	0	T	C	consensus_score=24.1	frequency=1	major_base=C	major_cov=6/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/5
RA	6824	.	1	1485426	0	A	G	consensus_score=24.8	frequency=1	major_base=G	major_cov=6/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/5
RA	6825	.	1	1485428	0	C	T	consensus_score=23.6	frequency=1	major_base=T	major_cov=6/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/5
RA	6826	.	1	1485435	0	G	A	consensus_score=23.4	frequency=1	major_base=A	major_cov=6/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/5
RA	6827	.	1	1485437	0	A	G	consensus_score=26.1	frequency=1	major_base=G	major_cov=6/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/5
RA	6828	.	1	1485440	0	C	T	consensus_score=23.8	frequency=1	major_base=T	major_cov=6/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/5
RA	6829	.	1	1485516	0	T	C	consensus_score=11.5	frequency=1	major_base=C	major_cov=2/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=2/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=2/4
RA	6830	.	1	1485520	0	C	T	consensus_score=10.6	frequency=1	major_base=T	major_cov=2/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=2/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=2/4
RA	6831	.	1	1485533	0	C	T	consensus_score=13.0	frequency=1	major_base=T	major_cov=4/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/3
RA	6832	.	1	1485539	0	T	C	consensus_score=20.8	frequency=1	major_base=C	major_cov=5/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/4
RA	6833	.	1	1485576	0	A	G	consensus_score=32.3	frequency=1	major_base=G	major_cov=6/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/7
RA	6834	.	1	1485587	0	C	T	consensus_score=41.1	frequency=1	major_base=T	major_cov=9/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/8
RA	6835	.	1	1485593	0	T	A	consensus_score=38.8	frequency=1	major_base=A	major_cov=9/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/7
RA	6836	.	1	1485596	0	G	A	consensus_score=37.7	frequency=1	major_base=A	major_cov=9/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/7
RA	6837	.	1	1485597	0	G	A	consensus_score=37.0	frequency=1	major_base=A	major_cov=9/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/7
RA	6838	.	1	1485617	0	G	A	consensus_score=43.7	frequency=1	major_base=A	major_cov=10/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/8
RA	6839	.	1	1485621	0	G	T	consensus_score=43.6	frequency=1	major_base=T	major_cov=10/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/8
RA	6840	.	1	1485623	0	T	C	consensus_score=46.6	frequency=1	major_base=C	major_cov=10/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/8
RA	6841	.	1	1485653	0	C	A	consensus_score=48.0	frequency=1	major_base=A	major_cov=12/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/8
RA	6842	.	1	1485656	0	A	T	consensus_score=47.6	frequency=1	major_base=T	major_cov=12/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/8
RA	6843	.	1	1485681	0	G	T	consensus_score=58.5	frequency=1	major_base=T	major_cov=15/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/8
RA	6844	.	1	1485689	0	A	G	consensus_score=55.0	frequency=1	major_base=G	major_cov=15/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/7
RA	6845	.	1	1485692	0	G	A	consensus_score=58.0	frequency=1	major_base=A	major_cov=15/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/7
RA	6846	.	1	1485695	0	A	G	consensus_score=60.1	frequency=1	major_base=G	major_cov=15/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/7
RA	6847	.	1	1485696	0	A	G	consensus_score=58.8	frequency=1	major_base=G	major_cov=15/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/7
RA	6848	.	1	1485704	0	G	A	consensus_score=69.2	frequency=1	major_base=A	major_cov=18/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/9
RA	6849	.	1	1485707	0	C	T	consensus_score=70.9	frequency=1	major_base=T	major_cov=18/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/9
RA	6850	.	1	1485710	0	A	G	consensus_score=69.1	frequency=1	major_base=G	major_cov=18/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/9
RA	6851	.	1	1485716	0	A	G	consensus_score=85.2	frequency=1	major_base=G	major_cov=22/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/9
RA	6852	.	1	1485719	0	G	C	consensus_score=83.6	frequency=1	major_base=C	major_cov=22/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/9
RA	6853	.	1	1485739	0	C	T	consensus_score=80.7	frequency=1	major_base=T	major_cov=23/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/8
RA	6854	.	1	1485746	0	T	C	consensus_score=102.7	frequency=1	major_base=C	major_cov=27/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/10
RA	6855	.	1	1485755	0	A	G	consensus_score=112.9	frequency=1	major_base=G	major_cov=29/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/11
RA	6856	.	1	1485788	0	T	C	consensus_score=129.7	frequency=1	major_base=C	major_cov=31/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/15
RA	6857	.	1	1485791	0	A	G	consensus_score=124.1	frequency=1	major_base=G	major_cov=31/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/15
RA	6858	.	1	1485797	0	T	C	consensus_score=123.6	frequency=1	major_base=C	major_cov=31/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/14
RA	6859	.	1	1485806	0	A	G	consensus_score=140.6	frequency=1	major_base=G	major_cov=31/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/18
RA	6860	.	1	1485809	0	A	G	consensus_score=132.3	frequency=1	major_base=G	major_cov=31/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/18
RA	6861	.	1	1485815	0	A	G	consensus_score=161.4	frequency=1	major_base=G	major_cov=34/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/22
RA	6862	.	1	1485843	0	A	G	consensus_score=151.6	frequency=1	major_base=G	major_cov=32/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/21
RA	6863	.	1	1485845	0	G	A	consensus_score=137.2	frequency=1	major_base=A	major_cov=32/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/21
RA	6864	.	1	1485852	0	A	C	consensus_score=149.2	frequency=1	major_base=C	major_cov=33/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/20
RA	6865	.	1	1485854	0	G	A	consensus_score=150.6	frequency=1	major_base=A	major_cov=33/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/20
RA	6866	.	1	1485863	0	C	T	consensus_score=148.6	frequency=1	major_base=T	major_cov=35/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/21
RA	6867	.	1	1485875	0	G	A	consensus_score=166.2	frequency=1	major_base=A	major_cov=38/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/25
RA	6868	.	1	1485881	0	T	C	consensus_score=182.8	frequency=1	major_base=C	major_cov=39/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/25
RA	6869	.	1	1485884	0	G	T	consensus_score=172.0	frequency=1	major_base=T	major_cov=39/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/25
RA	6870	.	1	1485912	0	T	C	consensus_score=200.3	frequency=1	major_base=C	major_cov=44/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/25
RA	6871	.	1	1485915	0	A	G	consensus_score=199.9	frequency=1	major_base=G	major_cov=44/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/25
RA	6872	.	1	1485920	0	A	G	consensus_score=214.9	frequency=1	major_base=G	major_cov=48/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/26
RA	6873	.	1	1485953	0	A	G	consensus_score=227.1	frequency=1	major_base=G	major_cov=50/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/28
RA	6874	.	1	1485968	0	G	A	consensus_score=201.7	frequency=1	major_base=A	major_cov=46/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/30
RA	6875	.	1	1485977	0	G	A	consensus_score=188.8	frequency=1	major_base=A	major_cov=41/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/30
RA	6876	.	1	1485983	0	A	G	consensus_score=192.4	frequency=1	major_base=G	major_cov=41/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/29
RA	6877	.	1	1485996	0	A	G	consensus_score=202.9	frequency=1	major_base=G	major_cov=40/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/31
RA	6878	.	1	1486043	0	A	G	consensus_score=174.2	frequency=1	major_base=G	major_cov=36/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/26
RA	6879	.	1	1486052	0	C	T	consensus_score=160.8	frequency=1	major_base=T	major_cov=34/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/26
RA	6880	.	1	1486104	0	G	A	consensus_score=159.5	frequency=1	major_base=A	major_cov=34/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/26
RA	6881	.	1	1486146	0	C	A	consensus_score=195.7	frequency=1	major_base=A	major_cov=41/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/33
RA	6882	.	1	1486203	0	T	C	consensus_score=209.6	frequency=1	major_base=C	major_cov=38/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/35
RA	6883	.	1	1486272	0	A	G	consensus_score=240.1	frequency=1	major_base=G	major_cov=45/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/39
RA	6884	.	1	1486316	0	A	G	consensus_score=246.0	frequency=1	major_base=G	major_cov=44/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/41
RA	6885	.	1	1486332	0	T	C	consensus_score=243.5	frequency=1	major_base=C	major_cov=46/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/38
RA	6886	.	1	1486356	0	T	C	consensus_score=270.2	frequency=1	major_base=C	major_cov=49/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/48
RA	6887	.	1	1486373	0	A	G	consensus_score=274.8	frequency=1	major_base=G	major_cov=43/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/51
RA	6888	.	1	1486381	0	G	A	consensus_score=264.3	frequency=1	major_base=A	major_cov=43/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/54
RA	6889	.	1	1486393	0	A	C	consensus_score=288.1	frequency=1	major_base=C	major_cov=43/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/56
RA	6890	.	1	1486410	0	C	T	consensus_score=275.4	frequency=1	major_base=T	major_cov=39/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/57
RA	6891	.	1	1486416	0	C	T	consensus_score=269.0	frequency=1	major_base=T	major_cov=40/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/59
RA	6892	.	1	1486464	0	C	T	consensus_score=261.4	frequency=1	major_base=T	major_cov=38/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/59
RA	6893	.	1	1486473	0	G	T	consensus_score=244.4	frequency=1	major_base=T	major_cov=35/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/56
RA	6894	.	1	1486479	0	T	C	consensus_score=255.8	frequency=1	major_base=C	major_cov=32/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/56
RA	6895	.	1	1486497	0	G	A	consensus_score=183.9	frequency=1	major_base=A	major_cov=26/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/43
RA	6896	.	1	1486500	0	T	C	consensus_score=201.5	frequency=1	major_base=C	major_cov=26/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/43
RA	6897	.	1	1486506	0	C	T	consensus_score=178.8	frequency=1	major_base=T	major_cov=26/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/42
RA	6898	.	1	1486515	0	A	C	consensus_score=187.8	frequency=1	major_base=C	major_cov=25/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/40
RA	6899	.	1	1486521	0	T	A	consensus_score=161.9	frequency=1	major_base=A	major_cov=23/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/38
RA	6900	.	1	1486530	0	C	G	consensus_score=170.4	frequency=1	major_base=G	major_cov=23/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/39
RA	6901	.	1	1486542	0	A	T	consensus_score=158.4	frequency=1	major_base=T	major_cov=24/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/36
RA	6902	.	1	1486545	0	T	C	consensus_score=172.6	frequency=1	major_base=C	major_cov=24/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/36
RA	6903	.	1	1486551	0	C	A	consensus_score=162.2	frequency=1	major_base=A	major_cov=23/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/35
RA	6904	.	1	1486554	0	C	A	consensus_score=161.6	frequency=1	major_base=A	major_cov=23/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/35
RA	6905	.	1	1486557	0	G	A	bias_e_value=2103060	bias_p_value=1	consensus_score=158.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=23/34	major_frequency=9.828e-01	minor_base=T	minor_cov=0/1	new_cov=23/34	polymorphism_frequency=9.828e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/35
RA	6906	.	1	1486563	0	T	C	consensus_score=176.3	frequency=1	major_base=C	major_cov=25/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/36
RA	6907	.	1	1486569	0	C	T	consensus_score=145.4	frequency=1	major_base=T	major_cov=21/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/34
RA	6908	.	1	1486575	0	T	A	consensus_score=136.9	frequency=1	major_base=A	major_cov=19/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/32
RA	6909	.	1	1486578	0	A	G	consensus_score=144.0	frequency=1	major_base=G	major_cov=19/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/32
RA	6910	.	1	1486581	0	G	A	consensus_score=136.9	frequency=1	major_base=A	major_cov=19/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/32
RA	6911	.	1	1486587	0	C	T	consensus_score=102.3	frequency=1	major_base=T	major_cov=15/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/24
RA	6912	.	1	1486591	0	C	A	consensus_score=102.1	frequency=1	major_base=A	major_cov=15/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/24
RA	6913	.	1	1486593	0	T	G	consensus_score=102.4	frequency=1	major_base=G	major_cov=15/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/22
RA	6914	.	1	1486609	0	G	A	consensus_score=113.1	frequency=1	major_base=A	major_cov=21/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/22
RA	6915	.	1	1486611	0	C	T	consensus_score=113.5	frequency=1	major_base=T	major_cov=21/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/22
RA	6916	.	1	1486614	0	C	T	consensus_score=113.3	frequency=1	major_base=T	major_cov=21/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/22
RA	6917	.	1	1486632	0	C	T	consensus_score=134.9	frequency=1	major_base=T	major_cov=24/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/27
RA	6918	.	1	1486641	0	G	A	consensus_score=132.8	frequency=1	major_base=A	major_cov=25/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/25
RA	6919	.	1	1486647	0	A	G	consensus_score=138.8	frequency=1	major_base=G	major_cov=25/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/25
RA	6920	.	1	1486665	0	G	A	consensus_score=158.4	frequency=1	major_base=A	major_cov=29/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/31
RA	6921	.	1	1486683	0	A	G	consensus_score=181.2	frequency=1	major_base=G	major_cov=30/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/36
RA	6922	.	1	1486684	0	G	A	consensus_score=176.2	frequency=1	major_base=A	major_cov=30/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/36
RA	6923	.	1	1486696	0	A	G	consensus_score=215.1	frequency=1	major_base=G	major_cov=33/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/41
RA	6924	.	1	1486708	0	A	G	consensus_score=238.4	frequency=1	major_base=G	major_cov=39/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/43
RA	6925	.	1	1486713	0	A	G	consensus_score=242.2	frequency=1	major_base=G	major_cov=39/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/44
RA	6926	.	1	1486719	0	T	C	consensus_score=240.7	frequency=1	major_base=C	major_cov=39/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/44
RA	6927	.	1	1486722	0	C	A	consensus_score=246.6	frequency=1	major_base=A	major_cov=39/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/48
RA	6928	.	1	1486764	0	T	C	consensus_score=243.3	frequency=1	major_base=C	major_cov=34/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/50
RA	6929	.	1	1486770	0	T	C	consensus_score=231.8	frequency=1	major_base=C	major_cov=31/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/50
RA	6930	.	1	1486783	0	A	G	bias_e_value=2103060	bias_p_value=1	consensus_score=213.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999649	major_base=G	major_cov=31/44	major_frequency=9.868e-01	minor_base=A	minor_cov=0/1	new_cov=31/44	polymorphism_frequency=9.868e-01	polymorphism_score=-5.2	prediction=consensus	ref_cov=0/1	total_cov=31/45
RA	6931	.	1	1486791	0	T	C	consensus_score=218.4	frequency=1	major_base=C	major_cov=31/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/44
RA	6932	.	1	1486797	0	A	G	consensus_score=212.7	frequency=1	major_base=G	major_cov=29/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/44
RA	6933	.	1	1486812	0	A	G	consensus_score=193.3	frequency=1	major_base=G	major_cov=28/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/42
RA	6934	.	1	1486817	0	A	G	consensus_score=179.2	frequency=1	major_base=G	major_cov=25/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/37
RA	6935	.	1	1486825	0	G	A	consensus_score=178.5	frequency=1	major_base=A	major_cov=27/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/39
RA	6936	.	1	1486832	0	A	.	consensus_score=249.1	frequency=1	major_base=.	major_cov=21/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/38
RA	6937	.	1	1486833	0	A	.	consensus_score=249.1	frequency=1	major_base=.	major_cov=21/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/38
RA	6938	.	1	1486845	0	A	G	bias_e_value=1595080	bias_p_value=0.75846	consensus_score=190.0	fisher_strand_p_value=0.426471	frequency=1	ks_quality_p_value=0.917557	major_base=G	major_cov=28/39	major_frequency=9.853e-01	minor_base=A	minor_cov=1/0	new_cov=28/39	polymorphism_frequency=9.853e-01	polymorphism_score=-5.4	prediction=consensus	ref_cov=1/0	total_cov=29/39
RA	6939	.	1	1486846	1	.	A	consensus_score=182.1	frequency=1	major_base=A	major_cov=29/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/39
RA	6940	.	1	1486851	0	A	G	consensus_score=195.6	frequency=1	major_base=G	major_cov=29/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/39
RA	6941	.	1	1486865	0	G	A	consensus_score=178.7	frequency=1	major_base=A	major_cov=29/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/38
RA	6942	.	1	1486871	0	G	A	consensus_score=179.7	frequency=1	major_base=A	major_cov=29/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/38
RA	6943	.	1	1486880	0	A	G	consensus_score=181.3	frequency=1	major_base=G	major_cov=29/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/37
RA	6944	.	1	1486884	0	A	G	consensus_score=171.5	frequency=1	major_base=G	major_cov=27/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/37
RA	6945	.	1	1486913	0	T	C	consensus_score=144.8	frequency=1	major_base=C	major_cov=23/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/28
RA	6946	.	1	1486923	0	G	A	consensus_score=128.0	frequency=1	major_base=A	major_cov=21/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/27
RA	6947	.	1	1486932	0	C	T	consensus_score=121.6	frequency=1	major_base=T	major_cov=19/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/28
RA	6948	.	1	1486949	0	T	C	consensus_score=112.5	frequency=1	major_base=C	major_cov=14/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/28
RA	6949	.	1	1486964	0	A	C	consensus_score=104.9	frequency=1	major_base=C	major_cov=15/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/22
RA	6950	.	1	1486970	0	G	A	consensus_score=89.3	frequency=1	major_base=A	major_cov=15/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/19
RA	6951	.	1	1486973	0	C	T	consensus_score=87.2	frequency=1	major_base=T	major_cov=15/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/19
RA	6952	.	1	1486979	0	C	T	consensus_score=80.9	frequency=1	major_base=T	major_cov=14/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/18
RA	6953	.	1	1486982	0	G	A	consensus_score=82.0	frequency=1	major_base=A	major_cov=14/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/18
RA	6954	.	1	1486985	0	T	C	consensus_score=89.1	frequency=1	major_base=C	major_cov=14/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/18
RA	6955	.	1	1486988	0	C	A	consensus_score=83.2	frequency=1	major_base=A	major_cov=14/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/18
RA	6956	.	1	1487003	0	A	G	consensus_score=94.9	frequency=1	major_base=G	major_cov=13/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/23
RA	6957	.	1	1487006	0	T	C	consensus_score=95.1	frequency=1	major_base=C	major_cov=13/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/23
RA	6958	.	1	1487015	0	T	C	consensus_score=110.4	frequency=1	major_base=C	major_cov=13/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/26
RA	6959	.	1	1487021	0	T	G	consensus_score=101.7	frequency=1	major_base=G	major_cov=12/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/26
RA	6960	.	1	1487024	0	A	G	consensus_score=103.3	frequency=1	major_base=G	major_cov=12/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/26
RA	6961	.	1	1487027	0	G	A	consensus_score=102.3	frequency=1	major_base=A	major_cov=12/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/26
RA	6962	.	1	1487033	0	T	C	consensus_score=113.7	frequency=1	major_base=C	major_cov=13/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/30
RA	6963	.	1	1487042	0	G	T	consensus_score=125.1	frequency=1	major_base=T	major_cov=13/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/34
RA	6964	.	1	1487044	0	T	C	consensus_score=133.7	frequency=1	major_base=C	major_cov=13/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/34
RA	6965	.	1	1487054	0	G	A	consensus_score=128.6	frequency=1	major_base=A	major_cov=11/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/37
RA	6966	.	1	1487072	0	G	A	consensus_score=129.7	frequency=1	major_base=A	major_cov=10/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/38
RA	6967	.	1	1487076	0	G	A	consensus_score=124.0	frequency=1	major_base=A	major_cov=8/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/38
RA	6968	.	1	1487088	0	T	A	consensus_score=131.7	frequency=1	major_base=A	major_cov=8/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/41
RA	6969	.	1	1487090	0	T	C	consensus_score=138.8	frequency=1	major_base=C	major_cov=8/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/41
RA	6970	.	1	1487097	0	T	A	consensus_score=141.1	frequency=1	major_base=A	major_cov=11/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/41
RA	6971	.	1	1487102	0	T	C	consensus_score=161.4	frequency=1	major_base=C	major_cov=12/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/45
RA	6972	.	1	1487108	0	C	T	consensus_score=165.3	frequency=1	major_base=T	major_cov=13/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/45
RA	6973	.	1	1487135	0	C	T	consensus_score=145.7	frequency=1	major_base=T	major_cov=12/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/45
RA	6974	.	1	1487136	0	A	G	bias_e_value=1117120	bias_p_value=0.531188	consensus_score=153.1	fisher_strand_p_value=0.210526	frequency=1	ks_quality_p_value=0.977696	major_base=G	major_cov=11/45	major_frequency=9.825e-01	minor_base=T	minor_cov=1/0	new_cov=11/45	polymorphism_frequency=9.825e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/45
RA	6975	.	1	1487138	0	G	A	consensus_score=155.5	frequency=1	major_base=A	major_cov=12/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/45
RA	6976	.	1	1487174	0	T	C	consensus_score=164.1	frequency=1	major_base=C	major_cov=14/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/46
RA	6977	.	1	1487181	0	G	A	consensus_score=145.7	frequency=1	major_base=A	major_cov=14/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/43
RA	6978	.	1	1487186	0	G	A	consensus_score=140.4	frequency=1	major_base=A	major_cov=14/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/38
RA	6979	.	1	1487195	0	G	A	consensus_score=127.8	frequency=1	major_base=A	major_cov=14/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/37
RA	6980	.	1	1487203	0	G	A	consensus_score=133.7	frequency=1	major_base=A	major_cov=12/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/37
RA	6981	.	1	1487210	0	A	G	consensus_score=127.9	frequency=1	major_base=G	major_cov=10/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/38
RA	6982	.	1	1487212	0	G	A	consensus_score=125.6	frequency=1	major_base=A	major_cov=10/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/38
RA	6983	.	1	1487219	0	T	A	consensus_score=127.7	frequency=1	major_base=A	major_cov=10/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/38
RA	6984	.	1	1487225	0	T	C	bias_e_value=1054410	bias_p_value=0.501371	consensus_score=129.2	fisher_strand_p_value=0.1875	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=8/39	major_frequency=9.792e-01	minor_base=A	minor_cov=1/0	new_cov=8/39	polymorphism_frequency=9.792e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/39
RA	6985	.	1	1487229	0	G	A	consensus_score=128.9	frequency=1	major_base=A	major_cov=9/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/38
RA	6986	.	1	1487237	0	G	T	consensus_score=109.5	frequency=1	major_base=T	major_cov=8/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/35
RA	6987	.	1	1487256	0	C	A	consensus_score=83.8	frequency=1	major_base=A	major_cov=7/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/25
RA	6988	.	1	1487276	0	A	G	consensus_score=71.7	frequency=1	major_base=G	major_cov=7/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/20
RA	6989	.	1	1487285	0	G	A	consensus_score=50.2	frequency=1	major_base=A	major_cov=7/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/14
RA	6990	.	1	1487294	0	T	G	consensus_score=49.1	frequency=1	major_base=G	major_cov=7/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/12
RA	6991	.	1	1487300	0	G	A	consensus_score=46.4	frequency=1	major_base=A	major_cov=7/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/12
RA	6992	.	1	1487304	0	C	T	consensus_score=45.9	frequency=1	major_base=T	major_cov=7/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/12
RA	6993	.	1	1487312	0	A	G	consensus_score=48.1	frequency=1	major_base=G	major_cov=7/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/13
RA	6994	.	1	1487329	0	A	G	consensus_score=41.9	frequency=1	major_base=G	major_cov=6/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/11
RA	6995	.	1	1487335	0	G	A	consensus_score=24.9	frequency=1	major_base=A	major_cov=2/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=2/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=2/9
RA	6996	.	1	1487336	0	T	C	consensus_score=23.2	frequency=1	major_base=C	major_cov=2/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=2/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=2/9
RA	6997	.	1	1487340	0	G	A	consensus_score=24.8	frequency=1	major_base=A	major_cov=2/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=2/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=2/9
RA	6998	.	1	1487343	0	G	A	consensus_score=25.1	frequency=1	major_base=A	major_cov=2/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=2/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=2/9
RA	6999	.	1	1487348	0	A	G	consensus_score=29.0	frequency=1	major_base=G	major_cov=3/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/9
RA	7000	.	1	1487375	0	G	A	consensus_score=25.1	frequency=1	major_base=A	major_cov=3/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/8
RA	7001	.	1	1487579	0	A	T	consensus_score=11.3	frequency=1	major_base=T	major_cov=3/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/3
RA	7002	.	1	1487600	0	T	C	consensus_score=16.0	frequency=1	major_base=C	major_cov=4/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/4
RA	7003	.	1	1487613	0	T	C	consensus_score=23.7	frequency=1	major_base=C	major_cov=5/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/5
RA	7004	.	1	1487630	0	G	T	consensus_score=43.6	frequency=1	major_base=T	major_cov=9/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/9
RA	7005	.	1	1487636	0	A	G	consensus_score=55.8	frequency=1	major_base=G	major_cov=12/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/9
RA	7006	.	1	1487639	0	G	A	consensus_score=55.3	frequency=1	major_base=A	major_cov=12/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/9
RA	7007	.	1	1487657	0	A	G	consensus_score=69.9	frequency=1	major_base=G	major_cov=17/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/10
RA	7008	.	1	1487660	0	C	T	consensus_score=68.8	frequency=1	major_base=T	major_cov=17/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/10
RA	7009	.	1	1487673	0	G	A	consensus_score=76.8	frequency=1	major_base=A	major_cov=18/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/12
RA	7010	.	1	1487681	0	T	C	consensus_score=84.1	frequency=1	major_base=C	major_cov=20/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/12
RA	7011	.	1	1487684	0	A	G	consensus_score=83.2	frequency=1	major_base=G	major_cov=20/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/12
RA	7012	.	1	1487693	0	A	G	consensus_score=96.5	frequency=1	major_base=G	major_cov=22/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/12
RA	7013	.	1	1487694	0	C	T	bias_e_value=2103050	bias_p_value=0.999998	consensus_score=81.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998219	major_base=T	major_cov=21/12	major_frequency=9.706e-01	minor_base=C	minor_cov=1/0	new_cov=21/12	polymorphism_frequency=9.706e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=1/0	total_cov=22/12
RA	7014	.	1	1487713	0	G	C	consensus_score=142.1	frequency=1	major_base=C	major_cov=38/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/14
RA	7015	.	1	1487715	0	A	G	consensus_score=140.5	frequency=1	major_base=G	major_cov=38/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/14
RA	7016	.	1	1487718	0	C	A	consensus_score=145.6	frequency=1	major_base=A	major_cov=38/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/14
RA	7017	.	1	1487719	0	C	A	consensus_score=147.9	frequency=1	major_base=A	major_cov=38/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/14
RA	7018	.	1	1487735	0	T	C	consensus_score=178.7	frequency=1	major_base=C	major_cov=39/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/24
RA	7019	.	1	1487789	0	C	T	consensus_score=205.7	frequency=1	major_base=T	major_cov=49/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/27
RA	7020	.	1	1487836	0	G	A	consensus_score=210.2	frequency=1	major_base=A	major_cov=48/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/25
RA	7021	.	1	1487844	0	T	A	consensus_score=177.2	frequency=1	major_base=A	major_cov=44/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/24
RA	7022	.	1	1487845	0	C	T	consensus_score=183.4	frequency=1	major_base=T	major_cov=44/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/24
RA	7023	.	1	1487846	0	A	G	consensus_score=198.4	frequency=1	major_base=G	major_cov=44/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/24
RA	7024	.	1	1487854	0	C	A	consensus_score=194.9	frequency=1	major_base=A	major_cov=44/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/24
RA	7025	.	1	1487859	0	A	G	consensus_score=198.4	frequency=1	major_base=G	major_cov=44/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/24
RA	7026	.	1	1487861	0	T	C	consensus_score=194.5	frequency=1	major_base=C	major_cov=44/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/24
RA	7027	.	1	1487864	0	C	A	consensus_score=182.6	frequency=1	major_base=A	major_cov=44/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/24
RA	7028	.	1	1487867	0	C	T	consensus_score=190.6	frequency=1	major_base=T	major_cov=44/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/24
RA	7029	.	1	1487869	0	A	G	consensus_score=196.2	frequency=1	major_base=G	major_cov=44/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/24
RA	7030	.	1	1487889	0	A	G	consensus_score=179.0	frequency=1	major_base=G	major_cov=41/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/21
RA	7031	.	1	1487897	0	C	A	consensus_score=151.3	frequency=1	major_base=A	major_cov=39/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/19
RA	7032	.	1	1487909	0	A	G	consensus_score=129.9	frequency=1	major_base=G	major_cov=32/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/17
RA	7033	.	1	1487922	0	G	T	consensus_score=124.0	frequency=1	major_base=T	major_cov=31/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/15
RA	7034	.	1	1487927	0	A	T	consensus_score=125.3	frequency=1	major_base=T	major_cov=31/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/15
RA	7035	.	1	1487951	0	T	C	consensus_score=81.0	frequency=1	major_base=C	major_cov=17/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/13
RA	7036	.	1	1487966	0	A	G	consensus_score=58.1	deleted=1	frequency=1	major_base=G	major_cov=16/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/6
RA	7037	.	1	1487969	0	A	C	consensus_score=59.2	deleted=1	frequency=1	major_base=C	major_cov=16/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/6
RA	7038	.	1	1487975	0	T	C	consensus_score=56.6	deleted=1	frequency=1	major_base=C	major_cov=16/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/6
RA	7039	.	1	1487984	0	A	C	consensus_score=53.9	deleted=1	frequency=1	major_base=C	major_cov=15/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/6
RA	7040	.	1	1487996	0	T	C	consensus_score=53.9	deleted=1	frequency=1	major_base=C	major_cov=15/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/6
RA	7041	.	1	1488014	0	C	T	consensus_score=48.2	deleted=1	frequency=1	major_base=T	major_cov=14/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/5
RA	7042	.	1	1488039	0	C	T	consensus_score=14.3	deleted=1	frequency=1	major_base=T	major_cov=5/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/2
RA	7043	.	1	1489709	0	A	G	consensus_score=17.5	deleted=1	frequency=1	major_base=G	major_cov=3/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/5
RA	7044	.	1	1489712	0	G	A	consensus_score=16.5	deleted=1	frequency=1	major_base=A	major_cov=3/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/5
RA	7045	.	1	1489718	0	G	A	consensus_score=19.2	deleted=1	frequency=1	major_base=A	major_cov=4/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/5
RA	7046	.	1	1489721	0	T	C	consensus_score=19.5	deleted=1	frequency=1	major_base=C	major_cov=4/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/5
RA	7047	.	1	1489956	0	G	A	consensus_score=162.2	frequency=1	major_base=A	major_cov=34/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/23
RA	7048	.	1	1489972	0	C	G	consensus_score=154.1	frequency=1	major_base=G	major_cov=29/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/25
RA	7049	.	1	1490042	0	G	A	consensus_score=119.1	frequency=1	major_base=A	major_cov=26/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/17
RA	7050	.	1	1490629	0	A	C	bias_e_value=0.00515887	bias_p_value=2.45303e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=116.4	fisher_strand_p_value=1.02192e-10	frequency=3.452e-01	ks_quality_p_value=1	major_base=A	major_cov=38/17	major_frequency=6.548e-01	minor_base=C	minor_cov=0/29	new_cov=0/29	polymorphism_frequency=3.452e-01	polymorphism_score=21.5	prediction=polymorphism	ref_cov=38/17	total_cov=38/51
RA	7051	.	1	1490722	0	A	G	consensus_score=194.2	frequency=1	major_base=G	major_cov=35/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/36
RA	7052	.	1	1492032	0	T	C	consensus_score=308.9	frequency=1	major_base=C	major_cov=60/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/53
RA	7053	.	1	1492105	0	T	C	consensus_score=287.8	frequency=1	major_base=C	major_cov=51/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/52
RA	7054	.	1	1492300	0	T	C	consensus_score=290.1	frequency=1	major_base=C	major_cov=40/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/60
RA	7055	.	1	1492520	0	G	A	consensus_score=169.6	frequency=1	major_base=A	major_cov=41/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/20
RA	7056	.	1	1492746	0	A	G	consensus_score=216.0	frequency=1	major_base=G	major_cov=38/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/40
RA	7057	.	1	1494018	0	G	A	consensus_score=184.2	frequency=1	major_base=A	major_cov=32/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/37
RA	7058	.	1	1494686	0	G	A	consensus_score=259.9	frequency=1	major_base=A	major_cov=45/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/49
RA	7059	.	1	1495618	0	G	A	consensus_score=220.2	frequency=1	major_base=A	major_cov=43/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/38
RA	7060	.	1	1496743	0	A	G	consensus_score=311.4	frequency=1	major_base=G	major_cov=52/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/59
RA	7061	.	1	1498065	0	G	A	consensus_score=213.6	frequency=1	major_base=A	major_cov=34/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/44
RA	7062	.	1	1499524	0	C	T	consensus_score=240.6	frequency=1	major_base=T	major_cov=47/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/38
RA	7063	.	1	1503664	0	A	G	consensus_score=356.1	frequency=1	major_base=G	major_cov=73/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=73/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=73/49
RA	7064	.	1	1504626	0	T	C	consensus_score=271.4	frequency=1	major_base=C	major_cov=60/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/37
RA	7065	.	1	1506122	0	T	C	consensus_score=228.1	frequency=1	major_base=C	major_cov=49/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/30
RA	7066	.	1	1506339	0	G	A	consensus_score=310.7	frequency=1	major_base=A	major_cov=57/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/57
RA	7067	.	1	1506565	0	A	G	consensus_score=333.8	frequency=1	major_base=G	major_cov=38/79	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/79	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/79
RA	7068	.	1	1506969	0	A	G	consensus_score=208.9	frequency=1	major_base=G	major_cov=33/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/41
RA	7069	.	1	1507720	0	G	T	consensus_score=312.2	frequency=1	major_base=T	major_cov=53/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/61
RA	7070	.	1	1508084	0	G	A	consensus_score=271.8	frequency=1	major_base=A	major_cov=58/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/41
RA	7071	.	1	1509219	0	G	A	consensus_score=285.9	frequency=1	major_base=A	major_cov=66/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/39
RA	7072	.	1	1509595	0	T	C	consensus_score=246.2	frequency=1	major_base=C	major_cov=43/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/45
RA	7073	.	1	1509976	0	A	C	consensus_score=273.9	frequency=1	major_base=C	major_cov=46/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/52
RA	7074	.	1	1512869	0	G	A	consensus_score=283.9	frequency=1	major_base=A	major_cov=52/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/51
RA	7075	.	1	1513010	0	A	G	consensus_score=276.3	frequency=1	major_base=G	major_cov=45/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/50
RA	7076	.	1	1513990	0	A	G	bias_e_value=1748830	bias_p_value=0.831564	consensus_score=327.5	fisher_strand_p_value=0.478992	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=56/62	major_frequency=9.916e-01	minor_base=T	minor_cov=1/0	new_cov=56/62	polymorphism_frequency=9.916e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/62
RA	7077	.	1	1514290	0	C	T	consensus_score=234.5	frequency=1	major_base=T	major_cov=37/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/48
RA	7078	.	1	1515318	0	C	T	consensus_score=240.3	frequency=1	major_base=T	major_cov=37/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/51
RA	7079	.	1	1515556	0	A	G	consensus_score=282.4	frequency=1	major_base=G	major_cov=41/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/60
RA	7080	.	1	1517419	0	A	C	consensus_score=243.6	frequency=1	major_base=C	major_cov=47/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/40
RA	7081	.	1	1517491	0	T	C	bias_e_value=1234220	bias_p_value=0.586871	consensus_score=197.3	fisher_strand_p_value=0.243071	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=44/43	major_frequency=9.667e-01	minor_base=G	minor_cov=3/0	new_cov=44/43	polymorphism_frequency=9.667e-01	polymorphism_score=-3.5	prediction=consensus	ref_cov=0/0	total_cov=47/43
RA	7082	.	1	1517689	0	A	C	consensus_score=262.5	frequency=1	major_base=C	major_cov=48/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/47
RA	7083	.	1	1518947	0	G	T	consensus_score=90.7	frequency=1	major_base=T	major_cov=16/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/19
RA	7084	.	1	1519130	0	C	T	consensus_score=221.8	frequency=1	major_base=T	major_cov=44/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/37
RA	7085	.	1	1519260	0	T	G	bias_e_value=0.00138124	bias_p_value=6.56779e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=123.8	fisher_strand_p_value=2.58803e-11	frequency=3.425e-01	ks_quality_p_value=1	major_base=T	major_cov=11/37	major_frequency=6.575e-01	minor_base=G	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=3.425e-01	polymorphism_score=10.3	prediction=polymorphism	ref_cov=11/37	total_cov=36/37
RA	7086	.	1	1520790	0	T	.	bias_e_value=1746160	bias_p_value=0.830296	consensus_score=368.2	fisher_strand_p_value=0.477273	frequency=1	ks_quality_p_value=1	major_base=.	major_cov=46/41	major_frequency=9.886e-01	minor_base=A	minor_cov=0/1	new_cov=46/41	polymorphism_frequency=9.886e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=0/0	total_cov=46/42
RA	7087	.	1	1523342	0	A	C	consensus_score=184.4	frequency=1	major_base=C	major_cov=35/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/29
RA	7088	.	1	1524971	0	C	.	consensus_score=328.0	frequency=1	major_base=.	major_cov=49/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/28
RA	7089	.	1	1526015	0	A	G	consensus_score=222.8	frequency=1	major_base=G	major_cov=41/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/40
RA	7090	.	1	1529925	1	.	T	consensus_score=142.8	frequency=1	major_base=T	major_cov=19/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/35
RA	7091	.	1	1530038	0	A	C	consensus_score=135.3	frequency=1	major_base=C	major_cov=25/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/26
RA	7092	.	1	1532580	0	T	C	consensus_score=295.1	frequency=1	major_base=C	major_cov=66/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/40
RA	7093	.	1	1533592	0	G	A	consensus_score=77.4	frequency=1	major_base=A	major_cov=13/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/17
RA	7094	.	1	1534593	0	A	C	consensus_score=196.9	frequency=1	major_base=C	major_cov=32/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/38
RA	7095	.	1	1535773	0	A	G	consensus_score=174.6	frequency=1	major_base=G	major_cov=34/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/27
RA	7096	.	1	1536396	0	G	A	consensus_score=222.6	frequency=1	major_base=A	major_cov=51/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/32
RA	7097	.	1	1536898	0	A	G	consensus_score=267.9	frequency=1	major_base=G	major_cov=49/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/46
RA	7098	.	1	1537093	0	A	G	consensus_score=196.6	frequency=1	major_base=G	major_cov=33/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/36
RA	7099	.	1	1537706	0	G	T	bias_e_value=1847040	bias_p_value=0.878263	consensus_score=253.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.549086	major_base=T	major_cov=45/44	major_frequency=9.889e-01	minor_base=.	minor_cov=1/0	new_cov=45/44	polymorphism_frequency=9.889e-01	polymorphism_score=-3.5	prediction=consensus	ref_cov=0/0	total_cov=46/44
RA	7100	.	1	1537758	0	G	.	bias_e_value=2103060	bias_p_value=1	consensus_score=304.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999289	major_base=.	major_cov=37/37	major_frequency=9.737e-01	minor_base=A	minor_cov=1/1	new_cov=37/37	polymorphism_frequency=9.737e-01	polymorphism_score=1.0	prediction=consensus	ref_cov=0/0	total_cov=38/38
RA	7101	.	1	1538717	0	A	G	consensus_score=104.4	frequency=1	major_base=G	major_cov=38/1	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/1	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/1
RA	7102	.	1	1541017	0	G	A	consensus_score=259.4	frequency=1	major_base=A	major_cov=46/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/49
RA	7103	.	1	1541589	0	A	G	consensus_score=210.4	frequency=1	major_base=G	major_cov=29/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/44
RA	7104	.	1	1541994	0	C	T	consensus_score=208.6	frequency=1	major_base=T	major_cov=31/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/46
RA	7105	.	1	1545831	0	G	A	bias_e_value=0.00389508	bias_p_value=1.8521e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=85.1	fisher_strand_p_value=7.62266e-11	frequency=3.088e-01	ks_quality_p_value=1	major_base=G	major_cov=38/9	major_frequency=6.912e-01	minor_base=A	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=3.088e-01	polymorphism_score=13.0	prediction=polymorphism	ref_cov=38/9	total_cov=38/30
RA	7106	.	1	1545969	0	G	A	consensus_score=216.4	frequency=1	major_base=A	major_cov=44/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/36
RA	7107	.	1	1546381	0	C	T	consensus_score=204.8	frequency=1	major_base=T	major_cov=26/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/48
RA	7108	.	1	1546485	0	C	A	bias_e_value=0.144553	bias_p_value=6.87349e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=136.0	fisher_strand_p_value=3.3777e-09	frequency=2.174e-01	ks_quality_p_value=0.991981	major_base=C	major_cov=6/48	major_frequency=7.826e-01	minor_base=A	minor_cov=14/1	new_cov=14/1	polymorphism_frequency=2.174e-01	polymorphism_score=14.5	prediction=polymorphism	ref_cov=6/48	total_cov=21/49
RA	7109	.	1	1546751	0	T	C	consensus_score=249.0	frequency=1	major_base=C	major_cov=47/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/42
RA	7110	.	1	1547248	0	G	T	consensus_score=274.4	frequency=1	major_base=T	major_cov=47/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/48
RA	7111	.	1	1548144	0	A	T	consensus_score=250.6	frequency=1	major_base=T	major_cov=44/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/44
RA	7112	.	1	1548266	0	G	A	consensus_score=205.2	frequency=1	major_base=A	major_cov=38/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/34
RA	7113	.	1	1548618	0	A	G	consensus_score=144.6	frequency=1	major_base=G	major_cov=30/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/23
RA	7114	.	1	1549499	0	C	A	bias_e_value=1726630	bias_p_value=0.821009	consensus_score=227.3	fisher_strand_p_value=0.46988	frequency=1	ks_quality_p_value=0.989477	major_base=A	major_cov=38/44	major_frequency=9.880e-01	minor_base=C	minor_cov=1/0	new_cov=38/44	polymorphism_frequency=9.880e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=1/0	total_cov=39/44
RA	7115	.	1	1550411	0	A	G	consensus_score=259.2	frequency=1	major_base=G	major_cov=47/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/46
RA	7116	.	1	1551157	0	A	G	bias_e_value=1665590	bias_p_value=0.791985	consensus_score=177.9	fisher_strand_p_value=0.430769	frequency=1	ks_quality_p_value=0.995682	major_base=G	major_cov=37/27	major_frequency=9.846e-01	minor_base=T	minor_cov=0/1	new_cov=37/27	polymorphism_frequency=9.846e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/28
RA	7117	.	1	1551911	0	C	T	bias_e_value=0.385519	bias_p_value=1.83313e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=31.2	fisher_strand_p_value=9.4096e-09	frequency=4.255e-01	ks_quality_p_value=1	major_base=C	major_cov=22/5	major_frequency=5.745e-01	minor_base=T	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=4.255e-01	polymorphism_score=19.9	prediction=polymorphism	ref_cov=22/5	total_cov=22/25
RA	7118	.	1	1552028	0	T	C	consensus_score=144.5	frequency=1	major_base=C	major_cov=26/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/28
RA	7119	.	1	1552736	0	C	A	consensus_score=270.2	frequency=1	major_base=A	major_cov=45/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/52
RA	7120	.	1	1552909	0	C	A	consensus_score=158.4	frequency=1	major_base=A	major_cov=30/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/29
RA	7121	.	1	1557708	0	T	C	consensus_score=298.8	frequency=1	major_base=C	major_cov=62/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/45
RA	7122	.	1	1558951	0	T	C	consensus_score=183.8	frequency=1	major_base=C	major_cov=35/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/32
RA	7123	.	1	1566139	0	C	T	consensus_score=36.9	deleted=1	frequency=1	major_base=T	major_cov=8/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/8
RA	7124	.	1	1566266	0	G	A	consensus_score=119.0	frequency=1	major_base=A	major_cov=23/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/21
RA	7125	.	1	1567492	0	G	A	consensus_score=210.7	frequency=1	major_base=A	major_cov=43/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/36
RA	7126	.	1	1567674	0	A	G	consensus_score=234.1	frequency=1	major_base=G	major_cov=44/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/40
RA	7127	.	1	1567921	0	T	C	consensus_score=225.5	frequency=1	major_base=C	major_cov=40/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/41
RA	7128	.	1	1568145	0	G	A	consensus_score=216.3	frequency=1	major_base=A	major_cov=38/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/37
RA	7129	.	1	1569282	0	A	G	consensus_score=216.4	frequency=1	major_base=G	major_cov=45/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/35
RA	7130	.	1	1569978	0	G	A	consensus_score=178.2	frequency=1	major_base=A	major_cov=31/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/34
RA	7131	.	1	1570706	0	G	A	consensus_score=190.9	frequency=1	major_base=A	major_cov=33/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/37
RA	7132	.	1	1570722	0	A	C	consensus_score=185.1	frequency=1	major_base=C	major_cov=30/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/36
RA	7133	.	1	1571051	1	.	A	consensus_score=206.2	frequency=1	major_base=A	major_cov=40/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/36
RA	7134	.	1	1571513	0	C	T	consensus_score=244.1	frequency=1	major_base=T	major_cov=47/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/40
RA	7135	.	1	1571539	0	C	A	consensus_score=232.0	frequency=1	major_base=A	major_cov=49/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/36
RA	7136	.	1	1574772	0	G	A	consensus_score=242.4	frequency=1	major_base=A	major_cov=34/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/52
RA	7137	.	1	1575334	0	C	T	consensus_score=104.5	frequency=1	major_base=T	major_cov=19/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/19
RA	7138	.	1	1575695	0	G	A	consensus_score=201.2	frequency=1	major_base=A	major_cov=30/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/41
RA	7139	.	1	1576852	0	G	A	consensus_score=186.8	frequency=1	major_base=A	major_cov=39/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/30
RA	7140	.	1	1577645	0	A	G	consensus_score=191.1	frequency=1	major_base=G	major_cov=39/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/29
RA	7141	.	1	1579017	0	C	T	consensus_score=257.0	frequency=1	major_base=T	major_cov=45/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/50
RA	7142	.	1	1580742	0	G	A	consensus_score=164.5	frequency=1	major_base=A	major_cov=31/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/30
RA	7143	.	1	1581101	0	G	A	consensus_score=188.6	frequency=1	major_base=A	major_cov=38/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/28
RA	7144	.	1	1582668	0	C	T	bias_e_value=2103060	bias_p_value=1	consensus_score=174.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=33/31	major_frequency=9.846e-01	minor_base=A	minor_cov=1/0	new_cov=33/31	polymorphism_frequency=9.846e-01	polymorphism_score=-6.4	prediction=consensus	ref_cov=0/0	total_cov=34/31
RA	7145	.	1	1583353	0	G	A	consensus_score=160.3	frequency=1	major_base=A	major_cov=35/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/25
RA	7146	.	1	1583793	0	T	C	consensus_score=183.2	frequency=1	major_base=C	major_cov=36/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/31
RA	7147	.	1	1583895	0	G	A	consensus_score=161.5	frequency=1	major_base=A	major_cov=30/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/32
RA	7148	.	1	1584024	0	A	G	bias_e_value=2101690	bias_p_value=0.999352	consensus_score=218.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.964221	major_base=G	major_cov=45/36	major_frequency=9.878e-01	minor_base=A	minor_cov=1/0	new_cov=45/36	polymorphism_frequency=9.878e-01	polymorphism_score=-4.9	prediction=consensus	ref_cov=1/0	total_cov=46/36
RA	7149	.	1	1584254	0	A	G	consensus_score=211.8	frequency=1	major_base=G	major_cov=41/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/37
RA	7150	.	1	1584744	0	A	G	consensus_score=202.6	frequency=1	major_base=G	major_cov=45/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/28
RA	7151	.	1	1584781	0	A	G	consensus_score=238.3	frequency=1	major_base=G	major_cov=53/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/30
RA	7152	.	1	1584994	0	G	T	consensus_score=196.2	frequency=1	major_base=T	major_cov=37/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/36
RA	7153	.	1	1585675	0	A	G	consensus_score=218.6	frequency=1	major_base=G	major_cov=41/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/39
RA	7154	.	1	1585883	0	C	G	consensus_score=183.2	frequency=1	major_base=G	major_cov=30/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/37
RA	7155	.	1	1588099	0	T	A	bias_e_value=3.91358e-05	bias_p_value=1.8609e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=126.7	fisher_strand_p_value=6.39984e-13	frequency=3.188e-01	ks_quality_p_value=1	major_base=T	major_cov=41/6	major_frequency=6.812e-01	minor_base=A	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=3.188e-01	polymorphism_score=21.2	prediction=polymorphism	ref_cov=41/6	total_cov=41/28
RA	7156	.	1	1590012	0	A	G	consensus_score=239.4	frequency=1	major_base=G	major_cov=43/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/41
RA	7157	.	1	1591462	0	G	A	consensus_score=232.1	frequency=1	major_base=A	major_cov=32/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/53
RA	7158	.	1	1592066	0	G	A	consensus_score=251.0	frequency=1	major_base=A	major_cov=50/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/44
RA	7159	.	1	1592204	0	T	C	consensus_score=255.3	frequency=1	major_base=C	major_cov=44/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/47
RA	7160	.	1	1592236	0	G	A	consensus_score=215.9	frequency=1	major_base=A	major_cov=41/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/47
RA	7161	.	1	1594428	0	C	A	consensus_score=210.8	frequency=1	major_base=A	major_cov=30/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/47
RA	7162	.	1	1595011	0	T	G	consensus_score=245.8	frequency=1	major_base=G	major_cov=43/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/44
RA	7163	.	1	1595076	0	G	A	consensus_score=246.3	frequency=1	major_base=A	major_cov=41/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/46
RA	7164	.	1	1595349	0	C	T	consensus_score=211.7	frequency=1	major_base=T	major_cov=38/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/41
RA	7165	.	1	1599403	0	T	C	consensus_score=301.6	frequency=1	major_base=C	major_cov=47/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/60
RA	7166	.	1	1602310	0	T	C	consensus_score=147.7	frequency=1	major_base=C	major_cov=28/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/24
RA	7167	.	1	1604368	0	A	T	bias_e_value=0.00923647	bias_p_value=4.39193e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=152.0	fisher_strand_p_value=1.87721e-10	frequency=2.674e-01	ks_quality_p_value=1	major_base=A	major_cov=46/17	major_frequency=7.326e-01	minor_base=T	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=2.674e-01	polymorphism_score=12.4	prediction=polymorphism	ref_cov=46/17	total_cov=46/40
RA	7168	.	1	1604582	0	C	T	consensus_score=264.6	frequency=1	major_base=T	major_cov=40/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/56
RA	7169	.	1	1605248	0	A	G	consensus_score=238.2	frequency=1	major_base=G	major_cov=41/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/44
RA	7170	.	1	1605931	0	G	A	consensus_score=341.9	frequency=1	major_base=A	major_cov=51/68	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/68	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/68
RA	7171	.	1	1607258	0	T	C	consensus_score=304.3	frequency=1	major_base=C	major_cov=46/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/59
RA	7172	.	1	1607811	0	A	G	consensus_score=231.0	frequency=1	major_base=G	major_cov=46/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/40
RA	7173	.	1	1610410	0	A	G	bias_e_value=1660970	bias_p_value=0.789791	consensus_score=240.6	fisher_strand_p_value=0.431818	frequency=1	ks_quality_p_value=0.987281	major_base=G	major_cov=37/50	major_frequency=9.886e-01	minor_base=A	minor_cov=1/0	new_cov=37/50	polymorphism_frequency=9.886e-01	polymorphism_score=-5.2	prediction=consensus	ref_cov=1/0	total_cov=38/50
RA	7174	.	1	1610476	0	C	T	bias_e_value=1620000	bias_p_value=0.770309	consensus_score=246.1	fisher_strand_p_value=0.404255	frequency=1	ks_quality_p_value=0.999771	major_base=T	major_cov=37/56	major_frequency=9.894e-01	minor_base=C	minor_cov=1/0	new_cov=37/56	polymorphism_frequency=9.894e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=38/56
RA	7175	.	1	1610989	0	C	T	consensus_score=298.4	frequency=1	major_base=T	major_cov=67/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=67/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/41
RA	7176	.	1	1610997	1	.	A	bias_e_value=2102170	bias_p_value=0.999581	consensus_score=308.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.971175	major_base=A	major_cov=66/41	major_frequency=9.907e-01	minor_base=.	minor_cov=1/0	new_cov=66/41	polymorphism_frequency=9.907e-01	polymorphism_score=-3.7	prediction=consensus	ref_cov=1/0	total_cov=67/41
RA	7177	.	1	1611497	0	A	G	consensus_score=294.9	frequency=1	major_base=G	major_cov=58/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/45
RA	7178	.	1	1613818	0	G	A	bias_e_value=2102990	bias_p_value=0.999968	consensus_score=358.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.992033	major_base=A	major_cov=60/66	major_frequency=9.921e-01	minor_base=G	minor_cov=0/1	new_cov=60/66	polymorphism_frequency=9.921e-01	polymorphism_score=-5.2	prediction=consensus	ref_cov=0/1	total_cov=60/67
RA	7179	.	1	1615802	0	C	A	consensus_score=285.7	frequency=1	major_base=A	major_cov=55/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/49
RA	7180	.	1	1618282	0	G	A	consensus_score=165.3	frequency=1	major_base=A	major_cov=38/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/23
RA	7181	.	1	1619091	0	G	A	consensus_score=220.5	frequency=1	major_base=A	major_cov=41/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/38
RA	7182	.	1	1619635	0	G	A	consensus_score=300.2	frequency=1	major_base=A	major_cov=56/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/54
RA	7183	.	1	1621753	0	C	T	consensus_score=233.2	frequency=1	major_base=T	major_cov=45/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/41
RA	7184	.	1	1622637	0	C	T	consensus_score=272.5	frequency=1	major_base=T	major_cov=42/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/53
RA	7185	.	1	1623191	0	A	G	consensus_score=100.8	frequency=1	major_base=G	major_cov=14/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/23
RA	7186	.	1	1627107	0	A	G	consensus_score=198.2	frequency=1	major_base=G	major_cov=32/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/42
RA	7187	.	1	1627507	0	C	T	consensus_score=262.9	frequency=1	major_base=T	major_cov=46/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/50
RA	7188	.	1	1630127	0	G	A	consensus_score=209.6	frequency=1	major_base=A	major_cov=36/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/42
RA	7189	.	1	1630511	0	A	G	consensus_score=256.2	frequency=1	major_base=G	major_cov=45/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/47
RA	7190	.	1	1631260	0	T	C	consensus_score=200.6	frequency=1	major_base=C	major_cov=38/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/33
RA	7191	.	1	1632641	0	T	C	consensus_score=325.1	frequency=1	major_base=C	major_cov=58/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/55
RA	7192	.	1	1633220	0	T	C	bias_e_value=2102600	bias_p_value=0.999781	consensus_score=47.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.979145	major_base=C	major_cov=11/14	major_frequency=8.065e-01	minor_base=T	minor_cov=3/3	new_cov=11/14	polymorphism_frequency=8.065e-01	polymorphism_score=5.7	prediction=consensus	ref_cov=3/3	total_cov=14/17
RA	7193	.	1	1633288	0	C	T	consensus_score=177.2	frequency=1	major_base=T	major_cov=28/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/36
RA	7194	.	1	1633297	0	C	T	consensus_score=175.9	frequency=1	major_base=T	major_cov=29/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/38
RA	7195	.	1	1633500	0	G	T	bias_e_value=1291230	bias_p_value=0.613978	consensus_score=243.2	fisher_strand_p_value=0.322192	frequency=1	ks_quality_p_value=0.815622	major_base=T	major_cov=52/40	major_frequency=9.583e-01	minor_base=G	minor_cov=1/3	new_cov=52/40	polymorphism_frequency=9.583e-01	polymorphism_score=1.8	prediction=consensus	ref_cov=1/3	total_cov=53/43
RA	7196	.	1	1634925	1	.	A	consensus_score=132.5	frequency=1	major_base=A	major_cov=30/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/22
RA	7197	.	1	1640500	0	C	A	consensus_score=130.4	frequency=1	major_base=A	major_cov=27/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/23
RA	7198	.	1	1640608	1	.	T	consensus_score=184.7	frequency=1	major_base=T	major_cov=36/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/31
RA	7199	.	1	1640902	0	T	C	consensus_score=254.4	frequency=1	major_base=C	major_cov=38/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/55
RA	7200	.	1	1641023	0	T	C	consensus_score=233.0	frequency=1	major_base=C	major_cov=31/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/54
RA	7201	.	1	1643645	0	C	T	consensus_score=235.2	frequency=1	major_base=T	major_cov=46/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/39
RA	7202	.	1	1645520	0	G	A	consensus_score=215.5	frequency=1	major_base=A	major_cov=33/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/46
RA	7203	.	1	1646025	0	C	A	consensus_score=119.0	frequency=1	major_base=A	major_cov=26/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/17
RA	7204	.	1	1647504	0	G	.	consensus_score=142.7	frequency=1	major_base=.	major_cov=20/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/15
RA	7205	.	1	1647521	0	C	T	consensus_score=65.1	frequency=1	major_base=T	major_cov=14/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/12
RA	7206	.	1	1647582	0	C	A	consensus_score=11.2	deleted=1	frequency=1	major_base=A	major_cov=2/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=2/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=2/4
RA	7207	.	1	1647988	0	T	G	consensus_score=44.7	deleted=1	frequency=1	major_base=G	major_cov=9/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/9
RA	7208	.	1	1647997	0	A	G	consensus_score=45.4	deleted=1	frequency=1	major_base=G	major_cov=9/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/9
RA	7209	.	1	1648006	0	A	.	consensus_score=74.4	deleted=1	frequency=1	major_base=.	major_cov=11/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/9
RA	7210	.	1	1648043	0	T	C	consensus_score=112.8	frequency=1	major_base=C	major_cov=25/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/16
RA	7211	.	1	1648141	0	C	A	consensus_score=170.8	frequency=1	major_base=A	major_cov=36/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/29
RA	7212	.	1	1651776	0	G	A	bias_e_value=0.0727863	bias_p_value=3.46098e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=90.3	fisher_strand_p_value=1.62986e-09	frequency=2.794e-01	ks_quality_p_value=1	major_base=G	major_cov=38/11	major_frequency=7.206e-01	minor_base=A	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=2.794e-01	polymorphism_score=11.4	prediction=polymorphism	ref_cov=38/11	total_cov=38/30
RA	7213	.	1	1651796	0	C	A	bias_e_value=0.0727095	bias_p_value=3.45732e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=117.7	fisher_strand_p_value=1.62806e-09	frequency=2.676e-01	ks_quality_p_value=1	major_base=C	major_cov=40/12	major_frequency=7.324e-01	minor_base=A	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=2.676e-01	polymorphism_score=16.4	prediction=polymorphism	ref_cov=40/12	total_cov=40/31
RA	7214	.	1	1652411	0	T	C	consensus_score=197.4	frequency=1	major_base=C	major_cov=35/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/36
RA	7215	.	1	1652826	0	G	A	consensus_score=165.5	frequency=1	major_base=A	major_cov=35/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/27
RA	7216	.	1	1656746	0	A	G	consensus_score=328.3	frequency=1	major_base=G	major_cov=69/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=69/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=69/45
RA	7217	.	1	1656931	0	T	C	bias_e_value=1894150	bias_p_value=0.900664	consensus_score=244.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.58879	major_base=C	major_cov=34/51	major_frequency=9.884e-01	minor_base=T	minor_cov=0/1	new_cov=34/51	polymorphism_frequency=9.884e-01	polymorphism_score=-5.5	prediction=consensus	ref_cov=0/1	total_cov=34/52
RA	7218	.	1	1656940	0	A	G	bias_e_value=1867980	bias_p_value=0.888223	consensus_score=184.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.566136	major_base=G	major_cov=26/41	major_frequency=9.853e-01	minor_base=A	minor_cov=0/1	new_cov=26/41	polymorphism_frequency=9.853e-01	polymorphism_score=-5.1	prediction=consensus	ref_cov=0/1	total_cov=26/42
RA	7219	.	1	1660044	0	G	A	consensus_score=221.7	frequency=1	major_base=A	major_cov=45/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/37
RA	7220	.	1	1661849	0	A	G	consensus_score=173.1	frequency=1	major_base=G	major_cov=20/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/42
RA	7221	.	1	1661952	0	C	T	consensus_score=127.9	frequency=1	major_base=T	major_cov=19/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/29
RA	7222	.	1	1662778	0	T	G	consensus_score=298.5	frequency=1	major_base=G	major_cov=53/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/52
RA	7223	.	1	1663821	0	A	G	consensus_score=199.8	frequency=1	major_base=G	major_cov=37/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/35
RA	7224	.	1	1664181	0	G	A	consensus_score=217.8	frequency=1	major_base=A	major_cov=43/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/36
RA	7225	.	1	1664447	0	T	C	consensus_score=284.3	frequency=1	major_base=C	major_cov=51/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/53
RA	7226	.	1	1664640	0	G	C	consensus_score=242.6	frequency=1	major_base=C	major_cov=35/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/50
RA	7227	.	1	1665338	0	T	G	consensus_score=227.2	frequency=1	major_base=G	major_cov=46/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/37
RA	7228	.	1	1665633	0	A	G	consensus_score=220.4	frequency=1	major_base=G	major_cov=40/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/38
RA	7229	.	1	1666350	0	C	T	consensus_score=236.4	frequency=1	major_base=T	major_cov=44/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/45
RA	7230	.	1	1667133	0	T	C	consensus_score=310.8	frequency=1	major_base=C	major_cov=55/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/57
RA	7231	.	1	1668155	0	A	G	consensus_score=269.6	frequency=1	major_base=G	major_cov=62/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/35
RA	7232	.	1	1668378	0	T	C	consensus_score=322.6	frequency=1	major_base=C	major_cov=50/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/62
RA	7233	.	1	1670090	0	C	A	consensus_score=247.7	frequency=1	major_base=A	major_cov=41/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/48
RA	7234	.	1	1670490	0	G	C	bias_e_value=2103050	bias_p_value=0.999999	consensus_score=301.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998384	major_base=C	major_cov=45/60	major_frequency=9.906e-01	minor_base=T	minor_cov=0/1	new_cov=45/60	polymorphism_frequency=9.906e-01	polymorphism_score=-5.2	prediction=consensus	ref_cov=0/0	total_cov=45/61
RA	7235	.	1	1670985	0	C	T	consensus_score=224.3	frequency=1	major_base=T	major_cov=29/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/52
RA	7236	.	1	1672122	0	A	G	consensus_score=320.6	frequency=1	major_base=G	major_cov=51/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/59
RA	7237	.	1	1672657	0	T	C	consensus_score=284.9	frequency=1	major_base=C	major_cov=47/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/53
RA	7238	.	1	1673513	0	G	A	consensus_score=218.7	frequency=1	major_base=A	major_cov=47/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/34
RA	7239	.	1	1676606	0	G	A	consensus_score=285.7	frequency=1	major_base=A	major_cov=52/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/53
RA	7240	.	1	1678670	0	G	A	consensus_score=267.3	frequency=1	major_base=A	major_cov=46/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/52
RA	7241	.	1	1679652	0	T	G	consensus_score=272.7	frequency=1	major_base=G	major_cov=47/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/47
RA	7242	.	1	1681639	0	C	T	bias_e_value=2103060	bias_p_value=1	consensus_score=313.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=65/57	major_frequency=9.919e-01	minor_base=G	minor_cov=1/0	new_cov=65/57	polymorphism_frequency=9.919e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/57
RA	7243	.	1	1681736	0	G	T	consensus_score=288.2	frequency=1	major_base=T	major_cov=45/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/60
RA	7244	.	1	1682312	0	T	C	consensus_score=297.3	frequency=1	major_base=C	major_cov=56/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/52
RA	7245	.	1	1682861	0	G	T	bias_e_value=1727780	bias_p_value=0.821555	consensus_score=356.8	fisher_strand_p_value=0.465649	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=70/60	major_frequency=9.924e-01	minor_base=C	minor_cov=0/1	new_cov=70/60	polymorphism_frequency=9.924e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=70/61
RA	7246	.	1	1683310	0	A	G	consensus_score=338.4	frequency=1	major_base=G	major_cov=65/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/57
RA	7247	.	1	1684883	0	T	C	consensus_score=385.3	frequency=1	major_base=C	major_cov=62/76	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/76	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/76
RA	7248	.	1	1685981	0	G	A	consensus_score=280.9	frequency=1	major_base=A	major_cov=45/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/56
RA	7249	.	1	1687826	0	A	C	consensus_score=338.5	frequency=1	major_base=C	major_cov=53/72	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/72	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/72
RA	7250	.	1	1687965	0	A	C	bias_e_value=3.67827	bias_p_value=1.74901e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=194.2	fisher_strand_p_value=1.0231e-07	frequency=2.549e-01	ks_quality_p_value=1	major_base=A	major_cov=41/35	major_frequency=7.451e-01	minor_base=C	minor_cov=0/26	new_cov=0/26	polymorphism_frequency=2.549e-01	polymorphism_score=18.9	prediction=polymorphism	ref_cov=41/35	total_cov=41/62
RA	7251	.	1	1687992	0	A	C	bias_e_value=1.00207e-10	bias_p_value=4.76485e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=127.1	fisher_strand_p_value=1.12569e-18	frequency=3.956e-01	ks_quality_p_value=1	major_base=A	major_cov=48/7	major_frequency=6.044e-01	minor_base=C	minor_cov=0/36	new_cov=0/36	polymorphism_frequency=3.956e-01	polymorphism_score=18.1	prediction=polymorphism	ref_cov=48/7	total_cov=48/43
RA	7252	.	1	1690013	0	T	G	consensus_score=279.1	frequency=1	major_base=G	major_cov=50/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/51
RA	7253	.	1	1690203	0	C	T	consensus_score=318.4	frequency=1	major_base=T	major_cov=52/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/63
RA	7254	.	1	1690277	0	A	G	consensus_score=262.9	frequency=1	major_base=G	major_cov=40/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/55
RA	7255	.	1	1690535	0	A	G	consensus_score=320.6	frequency=1	major_base=G	major_cov=50/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/64
RA	7256	.	1	1690913	0	T	C	consensus_score=140.0	frequency=1	major_base=C	major_cov=18/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/33
RA	7257	.	1	1692567	0	G	A	consensus_score=313.2	frequency=1	major_base=A	major_cov=51/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/63
RA	7258	.	1	1692632	1	.	C	bias_e_value=1693450	bias_p_value=0.80523	consensus_score=273.2	fisher_strand_p_value=0.569402	frequency=1	ks_quality_p_value=0.781353	major_base=C	major_cov=35/64	major_frequency=8.761e-01	minor_base=.	minor_cov=6/8	new_cov=35/64	polymorphism_frequency=8.761e-01	polymorphism_score=40.4	prediction=consensus	ref_cov=6/8	total_cov=41/72
RA	7259	.	1	1692632	2	.	A	bias_e_value=1509640	bias_p_value=0.717833	consensus_score=274.9	fisher_strand_p_value=0.569402	frequency=1	ks_quality_p_value=0.615342	major_base=A	major_cov=35/64	major_frequency=8.761e-01	minor_base=.	minor_cov=6/8	new_cov=35/64	polymorphism_frequency=8.761e-01	polymorphism_score=38.5	prediction=consensus	ref_cov=6/8	total_cov=41/72
RA	7260	.	1	1692991	0	G	T	consensus_score=277.1	frequency=1	major_base=T	major_cov=51/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/53
RA	7261	.	1	1693078	0	C	T	consensus_score=318.6	frequency=1	major_base=T	major_cov=54/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/63
RA	7262	.	1	1693639	0	G	A	consensus_score=341.6	frequency=1	major_base=A	major_cov=68/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=68/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/50
RA	7263	.	1	1694837	0	T	G	consensus_score=318.7	frequency=1	major_base=G	major_cov=71/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=71/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=71/44
RA	7264	.	1	1694840	0	A	G	consensus_score=318.6	frequency=1	major_base=G	major_cov=71/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=71/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=71/44
RA	7265	.	1	1694858	0	G	A	consensus_score=329.5	frequency=1	major_base=A	major_cov=73/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=73/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=73/46
RA	7266	.	1	1694902	0	A	G	consensus_score=312.0	frequency=1	major_base=G	major_cov=69/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=69/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=69/39
RA	7267	.	1	1694954	0	A	G	consensus_score=329.2	frequency=1	major_base=G	major_cov=65/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/48
RA	7268	.	1	1694962	0	T	C	consensus_score=297.2	frequency=1	major_base=C	major_cov=56/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/49
RA	7269	.	1	1694978	0	C	T	consensus_score=298.5	frequency=1	major_base=T	major_cov=54/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/50
RA	7270	.	1	1694987	0	G	A	consensus_score=297.4	frequency=1	major_base=A	major_cov=54/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/52
RA	7271	.	1	1694999	0	A	G	consensus_score=285.4	frequency=1	major_base=G	major_cov=53/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/51
RA	7272	.	1	1695005	0	A	G	consensus_score=304.6	frequency=1	major_base=G	major_cov=53/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/55
RA	7273	.	1	1695017	0	A	G	consensus_score=262.6	frequency=1	major_base=G	major_cov=46/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/48
RA	7274	.	1	1695047	0	A	G	consensus_score=244.1	frequency=1	major_base=G	major_cov=41/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/45
RA	7275	.	1	1695050	0	C	T	consensus_score=248.7	frequency=1	major_base=T	major_cov=41/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/45
RA	7276	.	1	1695052	0	A	G	consensus_score=239.2	frequency=1	major_base=G	major_cov=41/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/45
RA	7277	.	1	1695068	0	A	G	consensus_score=254.3	frequency=1	major_base=G	major_cov=47/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/45
RA	7278	.	1	1695187	0	G	A	consensus_score=333.5	frequency=1	major_base=A	major_cov=65/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/58
RA	7279	.	1	1695203	0	T	C	consensus_score=357.4	frequency=1	major_base=C	major_cov=71/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=71/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=71/53
RA	7280	.	1	1695249	0	G	A	bias_e_value=945333	bias_p_value=0.449504	consensus_score=317.0	fisher_strand_p_value=0.157983	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=72/46	major_frequency=9.833e-01	minor_base=T	minor_cov=0/2	new_cov=72/46	polymorphism_frequency=9.833e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=72/48
RA	7281	.	1	1695272	0	G	T	consensus_score=310.5	frequency=1	major_base=T	major_cov=67/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=67/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/47
RA	7282	.	1	1695275	0	A	C	consensus_score=329.1	frequency=1	major_base=C	major_cov=67/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=67/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/47
RA	7283	.	1	1695284	0	C	T	consensus_score=321.3	frequency=1	major_base=T	major_cov=69/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=69/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=69/48
RA	7284	.	1	1695290	0	G	A	consensus_score=326.3	frequency=1	major_base=A	major_cov=70/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=70/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=70/48
RA	7285	.	1	1695314	0	G	C	consensus_score=291.3	frequency=1	major_base=C	major_cov=58/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/49
RA	7286	.	1	1695317	0	A	G	consensus_score=295.5	frequency=1	major_base=G	major_cov=58/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/49
RA	7287	.	1	1695341	0	G	A	consensus_score=284.9	frequency=1	major_base=A	major_cov=55/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/45
RA	7288	.	1	1695350	0	C	T	consensus_score=218.1	frequency=1	major_base=T	major_cov=49/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/31
RA	7289	.	1	1695353	0	G	A	consensus_score=217.3	frequency=1	major_base=A	major_cov=49/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/31
RA	7290	.	1	1695356	0	A	G	consensus_score=220.5	frequency=1	major_base=G	major_cov=49/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/31
RA	7291	.	1	1695359	0	G	A	consensus_score=227.2	frequency=1	major_base=A	major_cov=49/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/31
RA	7292	.	1	1695407	0	A	C	consensus_score=271.1	frequency=1	major_base=C	major_cov=59/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/37
RA	7293	.	1	1695409	0	G	A	consensus_score=262.1	frequency=1	major_base=A	major_cov=59/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/37
RA	7294	.	1	1695413	0	T	C	bias_e_value=1583190	bias_p_value=0.752804	consensus_score=263.4	fisher_strand_p_value=0.385417	frequency=1	ks_quality_p_value=0.999781	major_base=C	major_cov=59/36	major_frequency=9.896e-01	minor_base=T	minor_cov=0/1	new_cov=59/36	polymorphism_frequency=9.896e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=59/37
RA	7295	.	1	1695422	0	G	A	consensus_score=273.4	frequency=1	major_base=A	major_cov=57/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/44
RA	7296	.	1	1695431	0	G	A	consensus_score=275.5	frequency=1	major_base=A	major_cov=55/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/45
RA	7297	.	1	1695440	0	T	C	consensus_score=287.0	frequency=1	major_base=C	major_cov=54/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/46
RA	7298	.	1	1695443	0	G	A	consensus_score=274.0	frequency=1	major_base=A	major_cov=54/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/46
RA	7299	.	1	1695512	0	G	A	consensus_score=293.4	frequency=1	major_base=A	major_cov=59/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/49
RA	7300	.	1	1695547	0	T	C	consensus_score=332.4	frequency=1	major_base=C	major_cov=57/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/58
RA	7301	.	1	1695548	0	G	A	consensus_score=312.9	frequency=1	major_base=A	major_cov=57/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/58
RA	7302	.	1	1695575	0	G	A	consensus_score=305.4	frequency=1	major_base=A	major_cov=58/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/53
RA	7303	.	1	1695580	0	T	G	consensus_score=300.8	frequency=1	major_base=G	major_cov=57/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/49
RA	7304	.	1	1695593	0	A	G	consensus_score=297.0	frequency=1	major_base=G	major_cov=56/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/51
RA	7305	.	1	1695594	0	T	C	consensus_score=304.1	frequency=1	major_base=C	major_cov=56/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/51
RA	7306	.	1	1695940	0	G	A	consensus_score=220.2	frequency=1	major_base=A	major_cov=51/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/28
RA	7307	.	1	1695941	0	C	A	consensus_score=219.7	frequency=1	major_base=A	major_cov=51/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/28
RA	7308	.	1	1696112	0	G	A	consensus_score=273.6	frequency=1	major_base=A	major_cov=62/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/40
RA	7309	.	1	1696142	0	G	T	consensus_score=289.1	frequency=1	major_base=T	major_cov=63/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/41
RA	7310	.	12	48	0	T	G	consensus_score=334.4	frequency=1	major_base=G	major_cov=49/71	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/71	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/71
RA	7311	.	12	168	0	A	C	consensus_score=279.9	frequency=1	major_base=C	major_cov=42/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/59
RA	7312	.	12	187	0	A	G	consensus_score=276.3	frequency=1	major_base=G	major_cov=44/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/53
RA	7313	.	12	229	0	T	C	consensus_score=284.5	frequency=1	major_base=C	major_cov=42/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/60
RA	7314	.	12	267	0	A	G	consensus_score=342.0	frequency=1	major_base=G	major_cov=50/68	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/68	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/68
RA	7315	.	12	303	0	T	C	consensus_score=338.6	frequency=1	major_base=C	major_cov=51/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/66
RA	7316	.	12	313	0	A	G	consensus_score=338.9	frequency=1	major_base=G	major_cov=51/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/67
RA	7317	.	2	125	0	G	T	consensus_score=227.0	frequency=1	major_base=T	major_cov=32/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/51
RA	7318	.	2	597	0	G	A	consensus_score=353.2	frequency=1	major_base=A	major_cov=65/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/58
RA	7319	.	2	2608	0	T	C	consensus_score=337.4	frequency=1	major_base=C	major_cov=54/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/66
RA	7320	.	2	2920	0	T	C	consensus_score=271.3	frequency=1	major_base=C	major_cov=41/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/53
RA	7321	.	2	2959	0	T	C	consensus_score=262.7	frequency=1	major_base=C	major_cov=44/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/52
RA	7322	.	2	3371	0	G	A	bias_e_value=4.77852e-06	bias_p_value=2.27218e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=111.0	fisher_strand_p_value=7.27042e-14	frequency=3.095e-01	ks_quality_p_value=1	major_base=G	major_cov=10/48	major_frequency=6.905e-01	minor_base=A	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=3.095e-01	polymorphism_score=20.8	prediction=polymorphism	ref_cov=10/48	total_cov=36/48
RA	7323	.	2	3413	0	T	A	bias_e_value=16.8064	bias_p_value=7.99143e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=175.9	fisher_strand_p_value=5.1636e-07	frequency=2.159e-01	ks_quality_p_value=1	major_base=T	major_cov=27/42	major_frequency=7.841e-01	minor_base=A	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.159e-01	polymorphism_score=10.8	prediction=polymorphism	ref_cov=27/42	total_cov=46/42
RA	7324	.	2	3492	0	C	A	consensus_score=306.1	frequency=1	major_base=A	major_cov=51/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/58
RA	7325	.	2	4626	0	T	C	consensus_score=308.7	frequency=1	major_base=C	major_cov=53/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/54
RA	7326	.	2	5826	0	C	T	consensus_score=316.4	frequency=1	major_base=T	major_cov=66/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/50
RA	7327	.	2	7299	0	A	C	consensus_score=300.9	frequency=1	major_base=C	major_cov=55/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/49
RA	7328	.	2	7999	0	T	C	consensus_score=287.5	frequency=1	major_base=C	major_cov=48/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/55
RA	7329	.	2	8553	0	T	G	bias_e_value=0.00220997	bias_p_value=1.05084e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=154.8	fisher_strand_p_value=4.22224e-11	frequency=2.841e-01	ks_quality_p_value=1	major_base=T	major_cov=17/46	major_frequency=7.159e-01	minor_base=G	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.841e-01	polymorphism_score=12.2	prediction=polymorphism	ref_cov=17/46	total_cov=43/46
RA	7330	.	2	8579	0	C	T	bias_e_value=0.00010607	bias_p_value=5.04361e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=138.3	fisher_strand_p_value=1.79846e-12	frequency=2.809e-01	ks_quality_p_value=1	major_base=C	major_cov=14/50	major_frequency=7.191e-01	minor_base=T	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.809e-01	polymorphism_score=14.9	prediction=polymorphism	ref_cov=14/50	total_cov=40/50
RA	7331	.	2	8603	0	G	T	bias_e_value=3.09325e-05	bias_p_value=1.47084e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=171.7	fisher_strand_p_value=5.01634e-13	frequency=2.688e-01	ks_quality_p_value=1	major_base=G	major_cov=14/54	major_frequency=7.312e-01	minor_base=T	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.688e-01	polymorphism_score=28.4	prediction=polymorphism	ref_cov=14/54	total_cov=39/54
RA	7332	.	2	9035	0	A	G	consensus_score=291.2	frequency=1	major_base=G	major_cov=51/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/53
RA	7333	.	2	9364	0	G	A	consensus_score=319.6	frequency=1	major_base=A	major_cov=57/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/58
RA	7334	.	2	9586	0	G	A	consensus_score=246.4	frequency=1	major_base=A	major_cov=49/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/41
RA	7335	.	2	9662	0	C	A	consensus_score=259.0	frequency=1	major_base=A	major_cov=49/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/40
RA	7336	.	2	13196	0	G	A	consensus_score=295.1	frequency=1	major_base=A	major_cov=55/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/51
RA	7337	.	2	14470	0	C	T	consensus_score=310.8	frequency=1	major_base=T	major_cov=66/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/45
RA	7338	.	2	14628	0	A	G	consensus_score=278.1	frequency=1	major_base=G	major_cov=54/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/46
RA	7339	.	2	15348	0	C	T	consensus_score=204.8	frequency=1	major_base=T	major_cov=40/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/36
RA	7340	.	2	15375	0	A	G	consensus_score=217.1	frequency=1	major_base=G	major_cov=42/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/37
RA	7341	.	2	17034	0	T	G	consensus_score=303.3	frequency=1	major_base=G	major_cov=59/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/52
RA	7342	.	2	17036	0	G	C	bias_e_value=1732170	bias_p_value=0.823644	consensus_score=302.9	fisher_strand_p_value=0.468468	frequency=1	ks_quality_p_value=0.999836	major_base=C	major_cov=59/51	major_frequency=9.910e-01	minor_base=T	minor_cov=0/1	new_cov=59/51	polymorphism_frequency=9.910e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/52
RA	7343	.	2	17805	0	C	T	consensus_score=198.2	frequency=1	major_base=T	major_cov=39/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/35
RA	7344	.	2	19002	0	T	C	bias_e_value=565807	bias_p_value=0.26904	consensus_score=199.1	fisher_strand_p_value=0.0767112	frequency=1	ks_quality_p_value=0.976538	major_base=C	major_cov=46/32	major_frequency=9.630e-01	minor_base=T	minor_cov=0/3	new_cov=46/32	polymorphism_frequency=9.630e-01	polymorphism_score=-5.2	prediction=consensus	ref_cov=0/3	total_cov=46/36
RA	7345	.	2	20763	0	C	A	consensus_score=247.8	frequency=1	major_base=A	major_cov=48/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/43
RA	7346	.	2	21392	0	A	G	consensus_score=211.5	frequency=1	major_base=G	major_cov=31/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/42
RA	7347	.	2	21757	0	A	C	consensus_score=174.0	frequency=1	major_base=C	major_cov=36/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/26
RA	7348	.	2	21814	0	C	T	consensus_score=205.6	frequency=1	major_base=T	major_cov=43/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/31
RA	7349	.	2	22289	0	T	G	consensus_score=110.2	frequency=1	major_base=G	major_cov=26/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/13
RA	7350	.	2	24261	0	A	G	bias_e_value=2098390	bias_p_value=0.99778	consensus_score=277.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.934104	major_base=G	major_cov=59/38	major_frequency=9.898e-01	minor_base=A	minor_cov=1/0	new_cov=59/38	polymorphism_frequency=9.898e-01	polymorphism_score=-5.0	prediction=consensus	ref_cov=1/0	total_cov=60/38
RA	7351	.	2	24558	0	G	A	consensus_score=263.2	frequency=1	major_base=A	major_cov=47/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/49
RA	7352	.	2	27288	0	A	G	consensus_score=183.5	frequency=1	major_base=G	major_cov=28/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/39
RA	7353	.	2	27305	0	T	C	consensus_score=208.2	frequency=1	major_base=C	major_cov=34/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/41
RA	7354	.	2	27735	0	T	C	consensus_score=279.9	frequency=1	major_base=C	major_cov=52/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/50
RA	7355	.	2	27914	0	A	G	consensus_score=234.7	frequency=1	major_base=G	major_cov=56/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/27
RA	7356	.	2	30458	0	T	C	consensus_score=241.2	frequency=1	major_base=C	major_cov=34/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/54
RA	7357	.	2	31701	0	C	T	consensus_score=254.7	frequency=1	major_base=T	major_cov=44/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/49
RA	7358	.	2	32359	0	A	G	consensus_score=315.4	frequency=1	major_base=G	major_cov=46/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/63
RA	7359	.	2	33770	0	A	T	consensus_score=361.5	frequency=1	major_base=T	major_cov=57/69	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/69	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/69
RA	7360	.	2	35415	0	G	C	consensus_score=306.9	frequency=1	major_base=C	major_cov=50/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/62
RA	7361	.	2	35471	0	A	G	consensus_score=329.7	frequency=1	major_base=G	major_cov=49/68	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/68	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/68
RA	7362	.	2	35494	0	C	A	consensus_score=332.0	frequency=1	major_base=A	major_cov=50/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/67
RA	7363	.	2	35517	1	.	T	consensus_score=329.2	frequency=1	major_base=T	major_cov=45/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/67
RA	7364	.	2	35543	0	C	T	consensus_score=317.9	frequency=1	major_base=T	major_cov=52/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/64
RA	7365	.	2	36466	0	A	G	consensus_score=327.8	frequency=1	major_base=G	major_cov=54/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/65
RA	7366	.	2	38687	0	C	A	bias_e_value=0.00193613	bias_p_value=9.20624e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=196.9	fisher_strand_p_value=3.67869e-11	frequency=2.188e-01	ks_quality_p_value=1	major_base=C	major_cov=58/17	major_frequency=7.812e-01	minor_base=A	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=2.188e-01	polymorphism_score=15.3	prediction=polymorphism	ref_cov=58/17	total_cov=58/38
RA	7367	.	2	38723	0	G	A	bias_e_value=0.00499603	bias_p_value=2.3756e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=141.2	fisher_strand_p_value=9.88284e-11	frequency=2.360e-01	ks_quality_p_value=1	major_base=G	major_cov=52/16	major_frequency=7.640e-01	minor_base=A	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=2.360e-01	polymorphism_score=12.7	prediction=polymorphism	ref_cov=52/16	total_cov=52/37
RA	7368	.	2	38744	0	A	G	consensus_score=236.5	frequency=1	major_base=G	major_cov=50/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/36
RA	7369	.	2	39346	0	C	T	consensus_score=306.0	frequency=1	major_base=T	major_cov=49/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/63
RA	7370	.	2	39703	0	C	T	consensus_score=418.3	frequency=1	major_base=T	major_cov=71/77	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=71/77	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=71/77
RA	7371	.	2	40624	0	T	A	consensus_score=195.6	frequency=1	major_base=A	major_cov=26/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/46
RA	7372	.	2	40903	0	A	G	consensus_score=230.9	frequency=1	major_base=G	major_cov=38/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/43
RA	7373	.	2	41478	0	G	.	consensus_score=626.9	frequency=1	major_base=.	major_cov=71/75	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=71/75	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=71/75
RA	7374	.	2	42479	0	C	A	consensus_score=410.4	frequency=1	major_base=A	major_cov=75/79	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=75/79	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=75/79
RA	7375	.	2	42517	0	C	A	consensus_score=393.3	frequency=1	major_base=A	major_cov=66/77	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/77	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/77
RA	7376	.	2	42654	0	G	A	consensus_score=275.3	frequency=1	major_base=A	major_cov=62/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/40
RA	7377	.	2	44064	0	G	C	consensus_score=374.2	frequency=1	major_base=C	major_cov=73/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=73/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=73/56
RA	7378	.	2	45632	0	G	A	consensus_score=298.2	frequency=1	major_base=A	major_cov=49/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/55
RA	7379	.	2	46091	0	A	G	consensus_score=346.2	frequency=1	major_base=G	major_cov=71/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=71/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=71/47
RA	7380	.	2	46566	0	A	G	consensus_score=308.0	frequency=1	major_base=G	major_cov=52/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/57
RA	7381	.	2	47264	0	C	T	consensus_score=297.5	frequency=1	major_base=T	major_cov=43/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/63
RA	7382	.	2	47843	0	T	.	bias_e_value=1735660	bias_p_value=0.825304	consensus_score=428.2	fisher_strand_p_value=0.470588	frequency=1	ks_quality_p_value=1	major_base=.	major_cov=47/54	major_frequency=9.902e-01	minor_base=T	minor_cov=1/0	new_cov=47/54	polymorphism_frequency=9.902e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=1/0	total_cov=48/54
RA	7383	.	2	50525	0	C	G	consensus_score=379.9	frequency=1	major_base=G	major_cov=67/68	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=67/68	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/68
RA	7384	.	2	51900	0	T	G	bias_e_value=1.34559e-09	bias_p_value=6.39825e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=252.4	fisher_strand_p_value=1.61304e-17	frequency=2.891e-01	ks_quality_p_value=1	major_base=T	major_cov=21/70	major_frequency=7.109e-01	minor_base=G	minor_cov=37/0	new_cov=37/0	polymorphism_frequency=2.891e-01	polymorphism_score=12.2	prediction=polymorphism	ref_cov=21/70	total_cov=58/70
RA	7385	.	2	52912	0	A	G	bias_e_value=150326	bias_p_value=0.0714799	consensus_score=255.9	fisher_strand_p_value=0.0462757	frequency=1	ks_quality_p_value=0.291035	major_base=G	major_cov=39/61	major_frequency=9.346e-01	minor_base=A	minor_cov=0/7	new_cov=39/61	polymorphism_frequency=9.346e-01	polymorphism_score=4.3	prediction=consensus	ref_cov=0/7	total_cov=39/68
RA	7386	.	2	53487	0	C	T	consensus_score=358.7	frequency=1	major_base=T	major_cov=68/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=68/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/57
RA	7387	.	2	54220	0	G	T	consensus_score=302.1	frequency=1	major_base=T	major_cov=50/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/60
RA	7388	.	2	55679	0	A	G	consensus_score=286.8	frequency=1	major_base=G	major_cov=40/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/60
RA	7389	.	2	56424	0	A	C	consensus_score=229.8	frequency=1	major_base=C	major_cov=44/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/38
RA	7390	.	2	57178	0	G	C	consensus_score=411.3	frequency=1	major_base=C	major_cov=69/78	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=69/78	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=69/78
RA	7391	.	2	58386	1	.	A	consensus_score=263.2	frequency=1	major_base=A	major_cov=48/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/45
RA	7392	.	2	58819	0	G	A	consensus_score=346.3	frequency=1	major_base=A	major_cov=71/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=71/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=71/55
RA	7393	.	2	59364	0	C	T	consensus_score=238.9	frequency=1	major_base=T	major_cov=43/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/44
RA	7394	.	2	59511	1	.	A	bias_e_value=186.118	bias_p_value=8.84989e-05	consensus_score=208.1	fisher_strand_p_value=6.8663e-06	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=71/8	major_frequency=9.294e-01	minor_base=.	minor_cov=0/6	new_cov=71/8	polymorphism_frequency=9.294e-01	polymorphism_score=10.8	prediction=consensus	ref_cov=0/6	total_cov=71/14
RA	7395	.	2	60290	0	A	G	bias_e_value=2103060	bias_p_value=1	consensus_score=268.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999781	major_base=G	major_cov=35/60	major_frequency=9.896e-01	minor_base=T	minor_cov=0/1	new_cov=35/60	polymorphism_frequency=9.896e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/61
RA	7396	.	2	62599	0	C	T	consensus_score=385.8	frequency=1	major_base=T	major_cov=59/80	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/80	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/80
RA	7397	.	2	67083	0	A	G	consensus_score=330.1	frequency=1	major_base=G	major_cov=55/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/59
RA	7398	.	2	71135	0	T	C	consensus_score=287.0	frequency=1	major_base=C	major_cov=45/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/60
RA	7399	.	2	71183	0	A	G	consensus_score=277.6	frequency=1	major_base=G	major_cov=42/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/57
RA	7400	.	2	71266	0	G	A	bias_e_value=56.5292	bias_p_value=2.68795e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=126.4	fisher_strand_p_value=2.13312e-06	frequency=2.208e-01	ks_quality_p_value=0.888919	major_base=G	major_cov=23/37	major_frequency=7.792e-01	minor_base=A	minor_cov=17/0	new_cov=17/0	polymorphism_frequency=2.208e-01	polymorphism_score=11.0	prediction=polymorphism	ref_cov=23/37	total_cov=41/37
RA	7401	.	2	71295	0	T	A	bias_e_value=114.317	bias_p_value=5.43573e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=153.1	fisher_strand_p_value=4.05155e-06	frequency=2.821e-01	ks_quality_p_value=1	major_base=T	major_cov=27/29	major_frequency=7.179e-01	minor_base=A	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.821e-01	polymorphism_score=14.1	prediction=polymorphism	ref_cov=27/29	total_cov=50/29
RA	7402	.	2	74497	0	G	A	consensus_score=378.1	frequency=1	major_base=A	major_cov=74/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=74/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=74/62
RA	7403	.	2	75316	0	A	C	consensus_score=476.5	frequency=1	major_base=C	major_cov=78/91	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=78/91	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=78/91
RA	7404	.	2	75889	0	A	G	bias_e_value=2102090	bias_p_value=0.999541	consensus_score=405.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.969854	major_base=G	major_cov=72/73	major_frequency=9.932e-01	minor_base=A	minor_cov=1/0	new_cov=72/73	polymorphism_frequency=9.932e-01	polymorphism_score=-5.5	prediction=consensus	ref_cov=1/0	total_cov=73/73
RA	7405	.	2	76056	0	A	C	consensus_score=350.4	frequency=1	major_base=C	major_cov=52/68	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/68	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/68
RA	7406	.	2	76177	0	C	T	consensus_score=347.4	frequency=1	major_base=T	major_cov=69/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=69/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=69/54
RA	7407	.	2	76875	0	T	C	consensus_score=371.8	frequency=1	major_base=C	major_cov=67/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=67/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/66
RA	7408	.	2	77219	0	C	T	consensus_score=289.4	frequency=1	major_base=T	major_cov=51/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/51
RA	7409	.	2	77788	0	A	G	consensus_score=332.5	frequency=1	major_base=G	major_cov=57/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/62
RA	7410	.	2	78404	0	G	T	consensus_score=307.5	frequency=1	major_base=T	major_cov=56/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/54
RA	7411	.	2	78573	0	A	G	bias_e_value=1774800	bias_p_value=0.843913	consensus_score=320.9	fisher_strand_p_value=0.496183	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=66/64	major_frequency=9.848e-01	minor_base=T	minor_cov=0/2	new_cov=66/64	polymorphism_frequency=9.848e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/66
RA	7412	.	2	79668	0	A	G	consensus_score=295.3	frequency=1	major_base=G	major_cov=50/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/55
RA	7413	.	2	81226	0	T	C	consensus_score=299.8	frequency=1	major_base=C	major_cov=65/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/42
RA	7414	.	2	81584	0	T	C	consensus_score=392.8	frequency=1	major_base=C	major_cov=70/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=70/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=70/66
RA	7415	.	2	83262	0	A	G	consensus_score=308.0	frequency=1	major_base=G	major_cov=56/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/53
RA	7416	.	2	83768	0	C	A	consensus_score=343.3	frequency=1	major_base=A	major_cov=68/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=68/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/55
RA	7417	.	2	83925	0	G	A	bias_e_value=1694140	bias_p_value=0.805561	consensus_score=351.2	fisher_strand_p_value=0.445312	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=71/56	major_frequency=9.922e-01	minor_base=G	minor_cov=0/1	new_cov=71/56	polymorphism_frequency=9.922e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=71/59
RA	7418	.	2	84565	0	A	G	consensus_score=385.6	frequency=1	major_base=G	major_cov=72/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=72/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=72/59
RA	7419	.	2	84656	0	T	C	consensus_score=382.3	frequency=1	major_base=C	major_cov=70/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=70/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=70/66
RA	7420	.	2	84998	0	A	C	consensus_score=442.0	frequency=1	major_base=C	major_cov=79/74	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=79/74	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=79/74
RA	7421	.	2	85055	0	A	C	consensus_score=321.3	frequency=1	major_base=C	major_cov=58/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/58
RA	7422	.	2	86305	0	A	C	consensus_score=438.2	frequency=1	major_base=C	major_cov=73/83	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=73/83	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=73/83
RA	7423	.	2	86552	0	C	T	consensus_score=286.5	frequency=1	major_base=T	major_cov=52/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/51
RA	7424	.	2	88828	0	T	G	consensus_score=293.3	frequency=1	major_base=G	major_cov=58/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/47
RA	7425	.	2	88980	0	G	A	consensus_score=373.6	frequency=1	major_base=A	major_cov=68/68	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=68/68	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/68
RA	7426	.	2	89065	0	C	T	consensus_score=365.8	frequency=1	major_base=T	major_cov=71/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=71/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=71/58
RA	7427	.	2	89178	0	A	G	consensus_score=315.9	frequency=1	major_base=G	major_cov=53/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/56
RA	7428	.	2	89898	0	A	G	consensus_score=375.8	frequency=1	major_base=G	major_cov=57/77	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/77	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/77
RA	7429	.	2	90436	0	C	T	bias_e_value=1670820	bias_p_value=0.79447	consensus_score=358.0	fisher_strand_p_value=0.435115	frequency=1	ks_quality_p_value=0.992512	major_base=T	major_cov=74/56	major_frequency=9.924e-01	minor_base=C	minor_cov=0/1	new_cov=74/56	polymorphism_frequency=9.924e-01	polymorphism_score=-5.5	prediction=consensus	ref_cov=0/1	total_cov=74/57
RA	7430	.	2	91465	0	C	T	consensus_score=295.4	frequency=1	major_base=T	major_cov=50/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/59
RA	7431	.	2	92347	0	G	A	consensus_score=295.5	frequency=1	major_base=A	major_cov=55/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/52
RA	7432	.	2	93348	0	A	G	consensus_score=209.7	frequency=1	major_base=G	major_cov=42/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/34
RA	7433	.	2	93376	0	C	T	consensus_score=245.2	frequency=1	major_base=T	major_cov=44/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/43
RA	7434	.	2	93653	0	A	G	consensus_score=302.8	frequency=1	major_base=G	major_cov=54/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/55
RA	7435	.	2	93920	0	T	G	consensus_score=297.4	frequency=1	major_base=G	major_cov=65/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/42
RA	7436	.	2	94143	0	G	T	bias_e_value=0.00133412	bias_p_value=6.34373e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=239.0	fisher_strand_p_value=2.49619e-11	frequency=2.193e-01	ks_quality_p_value=1	major_base=G	major_cov=26/63	major_frequency=7.807e-01	minor_base=T	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.193e-01	polymorphism_score=11.8	prediction=polymorphism	ref_cov=26/63	total_cov=51/63
RA	7437	.	2	94151	0	G	A	bias_e_value=0.00244371	bias_p_value=1.16198e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=178.9	fisher_strand_p_value=4.68856e-11	frequency=2.162e-01	ks_quality_p_value=1	major_base=G	major_cov=25/62	major_frequency=7.838e-01	minor_base=A	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.162e-01	polymorphism_score=16.8	prediction=polymorphism	ref_cov=25/62	total_cov=49/62
RA	7438	.	2	95667	0	T	C	bias_e_value=1786840	bias_p_value=0.84964	consensus_reject=FREQUENCY_CUTOFF	consensus_score=331.2	fisher_strand_p_value=0.774808	frequency=2.934e-01	ks_quality_p_value=0.651067	major_base=T	major_cov=72/99	major_frequency=7.066e-01	minor_base=C	minor_cov=28/43	new_cov=28/43	polymorphism_frequency=2.934e-01	polymorphism_score=133.0	prediction=polymorphism	ref_cov=72/99	total_cov=100/142
RA	7439	.	2	95668	0	C	A	bias_e_value=0.0326655	bias_p_value=1.55324e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=394.7	fisher_strand_p_value=0.774842	frequency=2.922e-01	ks_quality_p_value=9.0809e-10	major_base=C	major_cov=73/99	major_frequency=7.078e-01	minor_base=A	minor_cov=28/43	new_cov=28/43	polymorphism_frequency=2.922e-01	polymorphism_score=171.1	prediction=polymorphism	ref_cov=73/99	total_cov=101/142
RA	7440	.	2	95714	0	G	A	bias_e_value=565469	bias_p_value=0.26888	consensus_score=281.2	fisher_strand_p_value=0.0907705	frequency=1	ks_quality_p_value=0.8246	major_base=A	major_cov=50/90	major_frequency=8.333e-01	minor_base=G	minor_cov=15/13	new_cov=50/90	polymorphism_frequency=8.333e-01	polymorphism_score=44.8	prediction=consensus	ref_cov=15/13	total_cov=65/103
RA	7441	.	2	95718	0	T	C	bias_e_value=1088520	bias_p_value=0.517591	consensus_reject=FREQUENCY_CUTOFF	consensus_score=233.5	fisher_strand_p_value=0.198134	frequency=2.485e-01	ks_quality_p_value=0.996	major_base=T	major_cov=51/73	major_frequency=7.515e-01	minor_base=C	minor_cov=12/29	new_cov=12/29	polymorphism_frequency=2.485e-01	polymorphism_score=78.5	prediction=polymorphism	ref_cov=51/73	total_cov=63/102
RA	7442	.	2	95929	0	G	A	consensus_score=239.8	frequency=1	major_base=A	major_cov=41/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/46
RA	7443	.	2	96148	0	C	T	consensus_score=214.6	frequency=1	major_base=T	major_cov=32/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/43
RA	7444	.	2	98148	0	A	G	consensus_score=370.1	frequency=1	major_base=G	major_cov=73/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=73/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=73/53
RA	7445	.	2	98644	0	T	C	consensus_score=294.0	frequency=1	major_base=C	major_cov=59/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/46
RA	7446	.	2	101641	0	T	C	consensus_score=301.2	frequency=1	major_base=C	major_cov=42/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/66
RA	7447	.	2	102370	0	A	G	consensus_score=410.8	frequency=1	major_base=G	major_cov=73/82	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=73/82	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=73/82
RA	7448	.	2	102584	0	A	G	consensus_score=331.4	frequency=1	major_base=G	major_cov=68/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=68/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/50
RA	7449	.	2	102735	0	T	C	bias_e_value=2103000	bias_p_value=0.999972	consensus_score=218.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.9925	major_base=C	major_cov=21/60	major_frequency=9.878e-01	minor_base=T	minor_cov=0/1	new_cov=21/60	polymorphism_frequency=9.878e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=21/61
RA	7450	.	2	103889	0	T	C	bias_e_value=0.0112055	bias_p_value=5.32821e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=109.0	fisher_strand_p_value=2.29722e-10	frequency=2.254e-01	ks_quality_p_value=1	major_base=T	major_cov=47/8	major_frequency=7.746e-01	minor_base=C	minor_cov=0/16	new_cov=0/16	polymorphism_frequency=2.254e-01	polymorphism_score=11.6	prediction=polymorphism	ref_cov=47/8	total_cov=47/25
RA	7451	.	2	106543	0	G	T	bias_e_value=0.692406	bias_p_value=3.29238e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=177.0	fisher_strand_p_value=1.74535e-08	frequency=2.069e-01	ks_quality_p_value=1	major_base=G	major_cov=49/20	major_frequency=7.931e-01	minor_base=T	minor_cov=0/18	new_cov=0/18	polymorphism_frequency=2.069e-01	polymorphism_score=10.5	prediction=polymorphism	ref_cov=49/20	total_cov=49/39
RA	7452	.	2	106557	0	C	A	bias_e_value=6.18879e-05	bias_p_value=2.94276e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=168.8	fisher_strand_p_value=1.02884e-12	frequency=2.444e-01	ks_quality_p_value=1	major_base=C	major_cov=56/12	major_frequency=7.556e-01	minor_base=A	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.444e-01	polymorphism_score=20.6	prediction=polymorphism	ref_cov=56/12	total_cov=56/34
RA	7453	.	2	107139	0	T	G	bias_e_value=9.63047e-09	bias_p_value=4.57927e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=221.6	fisher_strand_p_value=1.21642e-16	frequency=3.233e-01	ks_quality_p_value=1	major_base=T	major_cov=27/63	major_frequency=6.767e-01	minor_base=G	minor_cov=43/0	new_cov=43/0	polymorphism_frequency=3.233e-01	polymorphism_score=20.9	prediction=polymorphism	ref_cov=27/63	total_cov=71/63
RA	7454	.	2	107189	0	G	T	bias_e_value=2103060	bias_p_value=1	consensus_score=303.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999858	major_base=T	major_cov=60/58	major_frequency=9.916e-01	minor_base=G	minor_cov=1/0	new_cov=60/58	polymorphism_frequency=9.916e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=61/58
RA	7455	.	2	107317	0	G	A	consensus_score=340.1	frequency=1	major_base=A	major_cov=71/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=71/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=71/54
RA	7456	.	2	107736	0	T	C	bias_e_value=0.00968605	bias_p_value=4.6057e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=200.0	fisher_strand_p_value=1.97277e-10	frequency=2.326e-01	ks_quality_p_value=1	major_base=T	major_cov=60/39	major_frequency=7.674e-01	minor_base=C	minor_cov=0/30	new_cov=0/30	polymorphism_frequency=2.326e-01	polymorphism_score=12.1	prediction=polymorphism	ref_cov=60/39	total_cov=60/71
RA	7457	.	2	108705	0	G	A	consensus_score=290.6	frequency=1	major_base=A	major_cov=47/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/55
RA	7458	.	2	108925	0	G	A	consensus_score=397.6	frequency=1	major_base=A	major_cov=82/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=82/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=82/62
RA	7459	.	2	109192	0	T	G	consensus_score=429.7	frequency=1	major_base=G	major_cov=82/69	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=82/69	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=82/69
RA	7460	.	2	109671	0	C	A	bias_e_value=4.8332e-08	bias_p_value=2.29818e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=180.6	fisher_strand_p_value=6.3861e-16	frequency=2.588e-01	ks_quality_p_value=1	major_base=C	major_cov=58/5	major_frequency=7.412e-01	minor_base=A	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.588e-01	polymorphism_score=10.1	prediction=polymorphism	ref_cov=58/5	total_cov=58/27
RA	7461	.	2	109697	0	A	G	consensus_score=232.0	frequency=1	major_base=G	major_cov=50/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/30
RA	7462	.	2	110358	0	A	G	consensus_score=338.4	frequency=1	major_base=G	major_cov=58/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/58
RA	7463	.	2	111277	0	C	A	consensus_score=316.7	frequency=1	major_base=A	major_cov=56/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/56
RA	7464	.	2	111625	0	T	C	bias_e_value=1570800	bias_p_value=0.746915	consensus_score=228.1	fisher_strand_p_value=0.380952	frequency=1	ks_quality_p_value=0.995421	major_base=C	major_cov=52/31	major_frequency=9.881e-01	minor_base=A	minor_cov=0/1	new_cov=52/31	polymorphism_frequency=9.881e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/32
RA	7465	.	2	112062	0	A	G	bias_e_value=0.000579834	bias_p_value=2.7571e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=58.5	fisher_strand_p_value=1.04911e-11	frequency=3.750e-01	ks_quality_p_value=1	major_base=A	major_cov=7/33	major_frequency=6.250e-01	minor_base=G	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=3.750e-01	polymorphism_score=19.6	prediction=polymorphism	ref_cov=7/33	total_cov=31/33
RA	7466	.	2	112461	0	T	C	consensus_score=324.1	frequency=1	major_base=C	major_cov=50/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/67
RA	7467	.	2	113150	0	T	A	consensus_score=197.5	frequency=1	major_base=A	major_cov=28/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/42
RA	7468	.	2	113470	0	T	C	consensus_score=171.1	frequency=1	major_base=C	major_cov=31/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/31
RA	7469	.	2	114063	0	T	C	consensus_score=281.1	frequency=1	major_base=C	major_cov=52/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/45
RA	7470	.	2	115889	0	T	C	consensus_score=321.8	frequency=1	major_base=C	major_cov=60/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/55
RA	7471	.	2	116618	0	C	T	consensus_score=258.0	frequency=1	major_base=T	major_cov=46/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/49
RA	7472	.	2	117446	0	A	G	consensus_score=272.2	frequency=1	major_base=G	major_cov=50/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/47
RA	7473	.	2	117491	0	T	C	consensus_score=257.9	frequency=1	major_base=C	major_cov=45/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/45
RA	7474	.	2	117581	0	A	C	consensus_score=228.1	frequency=1	major_base=C	major_cov=40/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/40
RA	7475	.	2	117611	0	T	G	consensus_score=228.9	frequency=1	major_base=G	major_cov=42/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/41
RA	7476	.	2	119060	0	T	G	consensus_score=237.0	frequency=1	major_base=G	major_cov=46/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/40
RA	7477	.	2	119254	0	T	C	consensus_score=261.0	frequency=1	major_base=C	major_cov=56/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/35
RA	7478	.	2	119436	0	T	C	consensus_score=295.6	frequency=1	major_base=C	major_cov=64/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/43
RA	7479	.	2	119604	0	C	T	consensus_score=227.1	frequency=1	major_base=T	major_cov=45/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/38
RA	7480	.	2	120270	0	C	G	consensus_score=228.5	frequency=1	major_base=G	major_cov=35/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/44
RA	7481	.	2	120670	0	G	A	consensus_score=186.9	frequency=1	major_base=A	major_cov=43/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/27
RA	7482	.	2	121409	0	G	A	consensus_score=154.8	frequency=1	major_base=A	major_cov=26/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/32
RA	7483	.	2	121809	0	T	C	consensus_score=259.0	frequency=1	major_base=C	major_cov=53/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/42
RA	7484	.	2	122767	0	C	T	bias_e_value=2103060	bias_p_value=1	consensus_score=262.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=50/42	major_frequency=9.892e-01	minor_base=A	minor_cov=1/0	new_cov=50/42	polymorphism_frequency=9.892e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/42
RA	7485	.	2	123238	0	T	C	consensus_score=259.5	frequency=1	major_base=C	major_cov=54/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/40
RA	7486	.	2	123532	0	T	G	consensus_score=215.1	frequency=1	major_base=G	major_cov=48/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/31
RA	7487	.	2	124396	0	G	A	consensus_score=244.3	frequency=1	major_base=A	major_cov=47/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/46
RA	7488	.	2	124456	0	G	A	consensus_score=251.7	frequency=1	major_base=A	major_cov=47/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/41
RA	7489	.	2	124839	0	C	G	consensus_score=92.0	frequency=1	major_base=G	major_cov=14/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/21
RA	7490	.	2	125093	0	T	C	consensus_score=142.4	frequency=1	major_base=C	major_cov=38/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/13
RA	7491	.	2	126753	0	G	A	consensus_score=232.5	frequency=1	major_base=A	major_cov=39/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/46
RA	7492	.	2	127283	0	C	T	consensus_score=172.4	frequency=1	major_base=T	major_cov=37/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/27
RA	7493	.	2	127376	0	A	G	consensus_score=133.4	frequency=1	major_base=G	major_cov=23/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/24
RA	7494	.	2	127434	0	C	T	consensus_score=81.9	frequency=1	major_base=T	major_cov=16/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/16
RA	7495	.	2	129118	0	T	C	bias_e_value=2103060	bias_p_value=1	consensus_score=219.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=45/44	major_frequency=9.889e-01	minor_base=G	minor_cov=1/0	new_cov=45/44	polymorphism_frequency=9.889e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/44
RA	7496	.	2	129713	0	A	G	consensus_score=224.4	frequency=1	major_base=G	major_cov=36/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/45
RA	7497	.	2	131108	0	T	C	consensus_score=103.1	frequency=1	major_base=C	major_cov=12/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/32
RA	7498	.	2	131666	0	A	G	bias_e_value=1756330	bias_p_value=0.835131	consensus_score=255.9	fisher_strand_p_value=0.483871	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=48/44	major_frequency=9.892e-01	minor_base=A	minor_cov=0/1	new_cov=48/44	polymorphism_frequency=9.892e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=48/45
RA	7499	.	2	131798	0	A	G	consensus_score=309.5	frequency=1	major_base=G	major_cov=64/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/43
RA	7500	.	2	132263	1	.	T	consensus_score=163.2	frequency=1	major_base=T	major_cov=28/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/30
RA	7501	.	2	132279	0	T	C	consensus_score=162.8	frequency=1	major_base=C	major_cov=28/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/31
RA	7502	.	2	132481	0	C	A	consensus_score=198.2	frequency=1	major_base=A	major_cov=38/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/32
RA	7503	.	2	133320	0	T	C	consensus_score=259.8	frequency=1	major_base=C	major_cov=59/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/38
RA	7504	.	2	133372	0	T	A	bias_e_value=0.0998323	bias_p_value=4.74701e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=175.7	fisher_strand_p_value=2.27096e-09	frequency=2.222e-01	ks_quality_p_value=1	major_base=T	major_cov=48/15	major_frequency=7.778e-01	minor_base=A	minor_cov=0/18	new_cov=0/18	polymorphism_frequency=2.222e-01	polymorphism_score=13.9	prediction=polymorphism	ref_cov=48/15	total_cov=48/33
RA	7505	.	2	133441	0	A	C	consensus_score=171.2	frequency=1	major_base=C	major_cov=37/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/26
RA	7506	.	2	133615	0	C	A	consensus_score=179.8	frequency=1	major_base=A	major_cov=39/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/25
RA	7507	.	2	133981	0	G	A	consensus_score=251.1	frequency=1	major_base=A	major_cov=52/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/35
RA	7508	.	2	134038	0	T	C	consensus_score=301.0	frequency=1	major_base=C	major_cov=61/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/47
RA	7509	.	2	134756	0	C	T	bias_e_value=272454	bias_p_value=0.129552	consensus_score=276.9	fisher_strand_p_value=0.0284025	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=52/52	major_frequency=9.455e-01	minor_base=G	minor_cov=6/0	new_cov=52/52	polymorphism_frequency=9.455e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/52
RA	7510	.	2	134870	0	G	A	consensus_score=283.3	frequency=1	major_base=A	major_cov=32/70	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/70	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/70
RA	7511	.	2	134963	0	T	C	consensus_score=188.6	frequency=1	major_base=C	major_cov=6/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/64
RA	7512	.	2	139005	0	C	T	consensus_score=330.1	frequency=1	major_base=T	major_cov=55/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/62
RA	7513	.	2	139178	0	C	G	consensus_score=230.1	frequency=1	major_base=G	major_cov=36/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/47
RA	7514	.	2	139222	0	C	T	consensus_score=176.5	frequency=1	major_base=T	major_cov=30/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/36
RA	7515	.	2	139477	0	A	G	consensus_score=277.6	frequency=1	major_base=G	major_cov=54/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/42
RA	7516	.	2	140160	0	T	G	consensus_score=231.9	frequency=1	major_base=G	major_cov=44/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/38
RA	7517	.	2	140387	0	T	C	consensus_score=363.2	frequency=1	major_base=C	major_cov=62/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/64
RA	7518	.	2	140469	0	T	G	bias_e_value=2103060	bias_p_value=1	consensus_score=327.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=59/59	major_frequency=9.916e-01	minor_base=A	minor_cov=0/1	new_cov=59/59	polymorphism_frequency=9.916e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/60
RA	7519	.	2	142193	0	C	T	consensus_score=311.7	frequency=1	major_base=T	major_cov=62/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/51
RA	7520	.	2	142632	0	T	G	consensus_score=341.7	frequency=1	major_base=G	major_cov=65/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/57
RA	7521	.	2	143028	0	A	G	consensus_score=399.4	frequency=1	major_base=G	major_cov=71/77	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=71/77	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=71/77
RA	7522	.	2	144413	0	A	G	consensus_score=411.5	frequency=1	major_base=G	major_cov=66/80	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/80	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/80
RA	7523	.	2	144778	0	T	C	consensus_score=322.6	frequency=1	major_base=C	major_cov=78/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=78/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=78/37
RA	7524	.	2	146168	0	C	T	consensus_score=416.7	frequency=1	major_base=T	major_cov=82/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=82/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=82/65
RA	7525	.	2	146255	0	C	A	consensus_score=398.1	frequency=1	major_base=A	major_cov=78/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=78/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=78/66
RA	7526	.	2	146716	0	G	A	consensus_score=175.6	frequency=1	major_base=A	major_cov=36/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/30
RA	7527	.	2	146784	0	G	T	consensus_score=224.2	frequency=1	major_base=T	major_cov=40/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/45
RA	7528	.	2	147609	0	T	.	consensus_score=115.2	frequency=1	major_base=.	major_cov=8/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/20
RA	7529	.	2	147875	0	T	G	consensus_score=94.0	frequency=1	major_base=G	major_cov=22/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/11
RA	7530	.	2	147942	0	C	T	consensus_score=79.0	frequency=1	major_base=T	major_cov=20/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/10
RA	7531	.	2	148214	0	T	C	consensus_score=232.6	frequency=1	major_base=C	major_cov=44/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/37
RA	7532	.	2	148561	0	A	C	consensus_score=516.4	frequency=1	major_base=C	major_cov=92/92	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=92/92	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=92/92
RA	7533	.	2	148632	0	A	G	consensus_score=492.0	frequency=1	major_base=G	major_cov=85/92	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=85/92	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=85/92
RA	7534	.	2	149326	0	C	A	bias_e_value=2103060	bias_p_value=1	consensus_score=373.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999564	major_base=A	major_cov=70/65	major_frequency=9.926e-01	minor_base=C	minor_cov=1/0	new_cov=70/65	polymorphism_frequency=9.926e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=71/65
RA	7535	.	2	149469	0	T	C	bias_e_value=1598730	bias_p_value=0.760192	consensus_score=328.2	fisher_strand_p_value=0.393162	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=71/45	major_frequency=9.915e-01	minor_base=A	minor_cov=0/1	new_cov=71/45	polymorphism_frequency=9.915e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=71/46
RA	7536	.	2	149568	0	T	C	consensus_score=367.2	frequency=1	major_base=C	major_cov=84/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=84/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=84/46
RA	7537	.	2	149962	0	A	C	consensus_score=444.6	frequency=1	major_base=C	major_cov=76/80	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=76/80	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=76/80
RA	7538	.	2	150017	0	T	C	consensus_score=410.1	frequency=1	major_base=C	major_cov=67/74	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=67/74	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/74
RA	7539	.	2	151679	0	C	T	consensus_score=418.1	frequency=1	major_base=T	major_cov=71/77	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=71/77	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=71/77
RA	7540	.	2	151938	0	C	T	consensus_score=314.4	frequency=1	major_base=T	major_cov=62/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/54
RA	7541	.	2	154199	0	T	C	consensus_score=400.5	frequency=1	major_base=C	major_cov=72/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=72/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=72/65
RA	7542	.	2	154390	0	A	G	consensus_score=377.3	frequency=1	major_base=G	major_cov=68/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=68/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/62
RA	7543	.	2	154899	0	A	C	consensus_score=304.4	frequency=1	major_base=C	major_cov=71/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=71/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=71/39
RA	7544	.	2	154903	0	G	A	consensus_score=308.7	frequency=1	major_base=A	major_cov=70/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=70/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=70/38
RA	7545	.	2	164297	0	A	G	consensus_score=277.5	frequency=1	major_base=G	major_cov=50/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/48
RA	7546	.	2	164301	0	C	T	consensus_score=241.5	frequency=1	major_base=T	major_cov=44/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/46
RA	7547	.	2	164321	0	T	C	consensus_score=226.7	frequency=1	major_base=C	major_cov=37/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/45
RA	7548	.	2	164326	0	C	A	consensus_score=232.7	frequency=1	major_base=A	major_cov=37/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/45
RA	7549	.	2	164327	0	T	G	bias_e_value=2103060	bias_p_value=1	consensus_score=234.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=37/44	major_frequency=9.878e-01	minor_base=A	minor_cov=0/1	new_cov=37/44	polymorphism_frequency=9.878e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/45
RA	7550	.	2	164344	0	C	T	consensus_score=244.5	frequency=1	major_base=T	major_cov=43/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/47
RA	7551	.	2	164346	0	G	A	consensus_score=244.1	frequency=1	major_base=A	major_cov=43/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/47
RA	7552	.	2	164351	0	A	G	consensus_score=273.2	frequency=1	major_base=G	major_cov=45/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/49
RA	7553	.	2	164360	0	C	T	consensus_score=269.9	frequency=1	major_base=T	major_cov=44/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/50
RA	7554	.	2	164366	0	A	C	consensus_score=268.1	frequency=1	major_base=C	major_cov=44/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/49
RA	7555	.	2	164367	0	G	A	consensus_score=264.5	frequency=1	major_base=A	major_cov=44/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/49
RA	7556	.	2	164385	0	T	A	consensus_score=268.6	frequency=1	major_base=A	major_cov=44/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/51
RA	7557	.	2	164387	0	T	C	consensus_score=277.7	frequency=1	major_base=C	major_cov=44/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/51
RA	7558	.	2	164388	0	G	A	consensus_score=255.0	frequency=1	major_base=A	major_cov=44/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/51
RA	7559	.	2	164390	0	A	G	consensus_score=279.5	frequency=1	major_base=G	major_cov=44/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/51
RA	7560	.	2	164408	0	C	T	consensus_score=274.3	frequency=1	major_base=T	major_cov=47/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/55
RA	7561	.	2	164518	0	G	A	consensus_score=195.3	frequency=1	major_base=A	major_cov=40/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/32
RA	7562	.	2	164537	0	A	.	consensus_score=336.5	frequency=1	major_base=.	major_cov=48/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/31
RA	7563	.	2	164549	0	G	A	consensus_score=221.6	frequency=1	major_base=A	major_cov=49/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/33
RA	7564	.	2	164551	0	G	A	consensus_score=221.4	frequency=1	major_base=A	major_cov=49/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/33
RA	7565	.	2	164559	0	T	C	consensus_score=256.6	frequency=1	major_base=C	major_cov=53/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/36
RA	7566	.	2	164574	0	G	A	consensus_score=243.7	frequency=1	major_base=A	major_cov=55/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/36
RA	7567	.	2	164597	0	A	T	consensus_score=267.1	frequency=1	major_base=T	major_cov=57/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/41
RA	7568	.	2	164886	0	T	.	bias_e_value=2103060	bias_p_value=1	consensus_score=565.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=.	major_cov=67/66	major_frequency=9.925e-01	minor_base=T	minor_cov=0/1	new_cov=67/66	polymorphism_frequency=9.925e-01	polymorphism_score=-3.9	prediction=consensus	ref_cov=0/1	total_cov=67/68
RA	7569	.	2	170260	0	A	T	consensus_score=246.2	frequency=1	major_base=T	major_cov=35/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/56
RA	7570	.	2	171266	0	A	G	consensus_score=270.8	frequency=1	major_base=G	major_cov=49/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/51
RA	7571	.	2	171677	0	G	C	consensus_score=328.0	frequency=1	major_base=C	major_cov=57/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/59
RA	7572	.	2	173306	0	T	C	consensus_score=294.3	frequency=1	major_base=C	major_cov=51/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/52
RA	7573	.	2	174215	0	C	A	consensus_score=274.0	frequency=1	major_base=A	major_cov=44/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/55
RA	7574	.	2	175222	0	G	T	consensus_score=323.9	frequency=1	major_base=T	major_cov=57/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/55
RA	7575	.	3	121	0	T	C	consensus_score=83.7	frequency=1	major_base=C	major_cov=8/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/24
RA	7576	.	3	269	0	G	A	consensus_score=182.5	frequency=1	major_base=A	major_cov=29/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/36
RA	7577	.	3	894	0	T	C	consensus_score=219.8	frequency=1	major_base=C	major_cov=42/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/37
RA	7578	.	3	1712	0	T	G	consensus_score=216.4	frequency=1	major_base=G	major_cov=29/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/46
RA	7579	.	3	8256	0	T	C	consensus_score=301.2	frequency=1	major_base=C	major_cov=44/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/64
RA	7580	.	3	9186	0	T	C	consensus_score=300.3	frequency=1	major_base=C	major_cov=56/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/51
RA	7581	.	3	11514	0	G	T	bias_e_value=2.32785e-07	bias_p_value=1.10689e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=235.0	fisher_strand_p_value=3.22058e-15	frequency=2.264e-01	ks_quality_p_value=1	major_base=G	major_cov=12/70	major_frequency=7.736e-01	minor_base=T	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.264e-01	polymorphism_score=11.1	prediction=polymorphism	ref_cov=12/70	total_cov=36/70
RA	7582	.	3	12017	0	A	C	consensus_score=291.9	frequency=1	major_base=C	major_cov=51/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/52
RA	7583	.	3	12403	0	C	T	bias_e_value=2103060	bias_p_value=1	consensus_score=279.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999817	major_base=T	major_cov=59/45	major_frequency=9.905e-01	minor_base=C	minor_cov=1/0	new_cov=59/45	polymorphism_frequency=9.905e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=60/45
RA	7584	.	3	12926	0	A	G	bias_e_value=7.61298e-10	bias_p_value=3.61996e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=174.2	fisher_strand_p_value=8.99368e-18	frequency=2.673e-01	ks_quality_p_value=1	major_base=A	major_cov=66/8	major_frequency=7.327e-01	minor_base=G	minor_cov=0/27	new_cov=0/27	polymorphism_frequency=2.673e-01	polymorphism_score=12.6	prediction=polymorphism	ref_cov=66/8	total_cov=66/35
RA	7585	.	3	13491	0	A	C	consensus_score=275.3	frequency=1	major_base=C	major_cov=61/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/43
RA	7586	.	3	14078	0	C	T	consensus_score=252.1	frequency=1	major_base=T	major_cov=44/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/48
RA	7587	.	3	14316	0	G	A	consensus_score=258.2	frequency=1	major_base=A	major_cov=44/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/48
RA	7588	.	3	14554	0	G	T	consensus_score=297.4	frequency=1	major_base=T	major_cov=58/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/49
RA	7589	.	3	15053	0	C	T	consensus_score=265.7	frequency=1	major_base=T	major_cov=51/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/47
RA	7590	.	3	19428	0	T	C	consensus_score=248.3	frequency=1	major_base=C	major_cov=42/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/48
RA	7591	.	3	19657	0	C	T	consensus_score=307.9	frequency=1	major_base=T	major_cov=64/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/48
RA	7592	.	3	20548	0	C	T	bias_e_value=1058390	bias_p_value=0.503264	consensus_reject=FREQUENCY_CUTOFF	consensus_score=133.0	fisher_strand_p_value=0.189804	frequency=2.198e-01	ks_quality_p_value=0.993828	major_base=C	major_cov=48/23	major_frequency=7.802e-01	minor_base=T	minor_cov=10/10	new_cov=10/10	polymorphism_frequency=2.198e-01	polymorphism_score=30.4	prediction=polymorphism	ref_cov=48/23	total_cov=58/33
RA	7593	.	3	20562	0	G	A	bias_e_value=297.811	bias_p_value=0.000141609	consensus_reject=FREQUENCY_CUTOFF	consensus_score=101.0	fisher_strand_p_value=0.224742	frequency=2.688e-01	ks_quality_p_value=5.09029e-05	major_base=G	major_cov=46/22	major_frequency=7.312e-01	minor_base=A	minor_cov=13/12	new_cov=13/12	polymorphism_frequency=2.688e-01	polymorphism_score=41.2	prediction=polymorphism	ref_cov=46/22	total_cov=59/34
RA	7594	.	3	20606	0	A	.	consensus_score=172.0	frequency=1	major_base=.	major_cov=36/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/13
RA	7595	.	3	20609	0	A	G	consensus_score=124.1	frequency=1	major_base=G	major_cov=36/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/13
RA	7596	.	3	20615	0	C	T	consensus_score=117.2	frequency=1	major_base=T	major_cov=36/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/13
RA	7597	.	3	20623	0	T	C	consensus_score=107.5	frequency=1	major_base=C	major_cov=33/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/11
RA	7598	.	3	20655	0	A	.	consensus_score=31.6	deleted=1	frequency=1	major_base=.	major_cov=11/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/4
RA	7599	.	3	20656	0	A	.	consensus_score=31.6	deleted=1	frequency=1	major_base=.	major_cov=11/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/4
RA	7600	.	3	21430	0	G	A	consensus_score=304.4	frequency=1	major_base=A	major_cov=57/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/50
RA	7601	.	3	22458	0	T	C	consensus_score=343.6	frequency=1	major_base=C	major_cov=69/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=69/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=69/53
RA	7602	.	3	22461	0	C	A	consensus_score=350.1	frequency=1	major_base=A	major_cov=69/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=69/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=69/53
RA	7603	.	3	23166	0	C	A	consensus_score=210.2	frequency=1	major_base=A	major_cov=39/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/38
RA	7604	.	3	23300	0	G	A	bias_e_value=1772670	bias_p_value=0.842899	consensus_score=246.8	fisher_strand_p_value=0.494845	frequency=1	ks_quality_p_value=0.999785	major_base=A	major_cov=49/47	major_frequency=9.897e-01	minor_base=G	minor_cov=0/1	new_cov=49/47	polymorphism_frequency=9.897e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=49/49
RA	7605	.	3	23370	0	C	T	consensus_score=226.6	frequency=1	major_base=T	major_cov=36/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/48
RA	7606	.	3	24166	0	T	C	consensus_score=316.5	frequency=1	major_base=C	major_cov=55/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/54
RA	7607	.	3	24372	0	T	C	consensus_score=274.0	frequency=1	major_base=C	major_cov=51/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/43
RA	7608	.	3	25114	0	C	T	consensus_score=256.1	frequency=1	major_base=T	major_cov=42/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/50
RA	7609	.	3	25524	0	A	G	consensus_score=315.3	frequency=1	major_base=G	major_cov=47/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/61
RA	7610	.	3	26843	0	G	A	consensus_score=240.8	frequency=1	major_base=A	major_cov=41/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/47
RA	7611	.	3	30670	0	A	G	bias_e_value=1589530	bias_p_value=0.755817	consensus_score=219.9	fisher_strand_p_value=0.423077	frequency=1	ks_quality_p_value=0.918284	major_base=G	major_cov=32/45	major_frequency=9.872e-01	minor_base=.	minor_cov=1/0	new_cov=32/45	polymorphism_frequency=9.872e-01	polymorphism_score=-3.0	prediction=consensus	ref_cov=0/0	total_cov=33/45
RA	7612	.	3	31180	0	T	C	consensus_score=229.9	frequency=1	major_base=C	major_cov=49/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/32
RA	7613	.	3	32075	0	T	C	consensus_score=288.3	frequency=1	major_base=C	major_cov=46/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/58
RA	7614	.	3	34504	0	G	T	consensus_score=252.7	frequency=1	major_base=T	major_cov=60/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/30
RA	7615	.	3	37672	0	A	C	consensus_score=230.7	frequency=1	major_base=C	major_cov=44/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/39
RA	7616	.	3	38883	0	G	A	consensus_score=215.7	frequency=1	major_base=A	major_cov=37/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/43
RA	7617	.	3	39051	0	A	G	consensus_score=93.1	frequency=1	major_base=G	major_cov=13/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/21
RA	7618	.	3	40390	0	T	G	consensus_score=361.6	frequency=1	major_base=G	major_cov=68/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=68/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/60
RA	7619	.	3	43599	0	G	A	consensus_score=210.7	frequency=1	major_base=A	major_cov=49/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/29
RA	7620	.	3	43848	0	G	A	consensus_score=313.3	frequency=1	major_base=A	major_cov=53/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/57
RA	7621	.	3	43884	0	G	A	consensus_score=320.6	frequency=1	major_base=A	major_cov=56/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/59
RA	7622	.	3	45731	0	T	G	consensus_score=308.7	frequency=1	major_base=G	major_cov=49/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/60
RA	7623	.	3	48023	0	G	A	consensus_score=353.4	frequency=1	major_base=A	major_cov=59/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/64
RA	7624	.	3	48514	0	T	C	consensus_score=304.2	frequency=1	major_base=C	major_cov=52/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/56
RA	7625	.	3	49765	0	T	G	consensus_score=255.8	frequency=1	major_base=G	major_cov=41/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/48
RA	7626	.	3	50227	0	T	G	consensus_score=244.2	frequency=1	major_base=G	major_cov=45/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/46
RA	7627	.	3	50712	0	A	G	consensus_score=311.9	frequency=1	major_base=G	major_cov=61/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/51
RA	7628	.	3	51731	0	A	G	consensus_score=339.2	frequency=1	major_base=G	major_cov=64/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/54
RA	7629	.	3	53246	0	A	C	consensus_score=320.9	frequency=1	major_base=C	major_cov=61/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/55
RA	7630	.	3	54300	0	G	A	bias_e_value=2103060	bias_p_value=1	consensus_score=304.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999827	major_base=A	major_cov=58/49	major_frequency=9.907e-01	minor_base=T	minor_cov=1/0	new_cov=58/49	polymorphism_frequency=9.907e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/49
RA	7631	.	3	55482	0	G	A	consensus_score=256.8	frequency=1	major_base=A	major_cov=44/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/50
RA	7632	.	3	55573	0	A	G	consensus_score=217.0	frequency=1	major_base=G	major_cov=49/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/30
RA	7633	.	3	55674	0	T	C	consensus_score=229.6	frequency=1	major_base=C	major_cov=45/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/36
RA	7634	.	3	58525	0	G	T	bias_e_value=1813730	bias_p_value=0.862426	consensus_score=288.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.523666	major_base=T	major_cov=43/62	major_frequency=9.906e-01	minor_base=.	minor_cov=0/1	new_cov=43/62	polymorphism_frequency=9.906e-01	polymorphism_score=-3.6	prediction=consensus	ref_cov=0/0	total_cov=43/63
RA	7635	.	3	59133	0	A	G	consensus_score=304.2	frequency=1	major_base=G	major_cov=61/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/48
RA	7636	.	3	59528	0	C	T	consensus_score=286.3	frequency=1	major_base=T	major_cov=57/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/43
RA	7637	.	3	61749	1	.	G	consensus_score=297.4	frequency=1	major_base=G	major_cov=37/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/65
RA	7638	.	3	62387	0	A	C	consensus_score=172.2	frequency=1	major_base=C	major_cov=33/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/29
RA	7639	.	3	63469	0	G	T	consensus_score=392.3	frequency=1	major_base=T	major_cov=68/76	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=68/76	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/76
RA	7640	.	3	64191	0	A	G	consensus_score=272.3	frequency=1	major_base=G	major_cov=61/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/38
RA	7641	.	3	64825	0	A	G	consensus_score=317.1	frequency=1	major_base=G	major_cov=51/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/61
RA	7642	.	3	64905	0	A	G	consensus_score=254.5	frequency=1	major_base=G	major_cov=44/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/45
RA	7643	.	3	65004	0	G	A	consensus_score=239.3	frequency=1	major_base=A	major_cov=44/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/44
RA	7644	.	3	65208	0	G	A	consensus_score=272.5	frequency=1	major_base=A	major_cov=51/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/44
RA	7645	.	3	65652	0	A	G	consensus_score=227.7	frequency=1	major_base=G	major_cov=46/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/33
RA	7646	.	3	68085	0	G	A	consensus_score=295.7	frequency=1	major_base=A	major_cov=63/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/47
RA	7647	.	3	68776	0	G	A	consensus_score=291.3	frequency=1	major_base=A	major_cov=49/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/57
RA	7648	.	3	70778	0	C	T	consensus_score=257.7	frequency=1	major_base=T	major_cov=49/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/44
RA	7649	.	3	71711	0	G	A	consensus_score=245.2	frequency=1	major_base=A	major_cov=45/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/45
RA	7650	.	3	72919	0	A	G	consensus_score=274.6	frequency=1	major_base=G	major_cov=42/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/55
RA	7651	.	3	73135	0	T	A	bias_e_value=4.7654e-05	bias_p_value=2.26594e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=150.9	fisher_strand_p_value=7.84786e-13	frequency=2.692e-01	ks_quality_p_value=1	major_base=T	major_cov=8/49	major_frequency=7.308e-01	minor_base=A	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.692e-01	polymorphism_score=11.1	prediction=polymorphism	ref_cov=8/49	total_cov=29/49
RA	7652	.	3	73165	0	A	G	bias_e_value=5.44126e-08	bias_p_value=2.58731e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=110.1	fisher_strand_p_value=7.21396e-16	frequency=2.987e-01	ks_quality_p_value=1	major_base=A	major_cov=4/50	major_frequency=7.013e-01	minor_base=G	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.987e-01	polymorphism_score=10.3	prediction=polymorphism	ref_cov=4/50	total_cov=30/50
RA	7653	.	3	73181	0	A	T	bias_e_value=2.43087e-05	bias_p_value=1.15587e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=148.4	fisher_strand_p_value=3.9089e-13	frequency=2.703e-01	ks_quality_p_value=1	major_base=A	major_cov=6/48	major_frequency=7.297e-01	minor_base=T	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.703e-01	polymorphism_score=18.8	prediction=polymorphism	ref_cov=6/48	total_cov=26/48
RA	7654	.	3	73561	0	A	G	consensus_score=225.2	frequency=1	major_base=G	major_cov=35/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/46
RA	7655	.	3	75660	0	G	A	consensus_score=274.4	frequency=1	major_base=A	major_cov=53/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/48
RA	7656	.	3	78901	0	A	G	consensus_score=233.2	frequency=1	major_base=G	major_cov=48/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/36
RA	7657	.	3	80451	0	T	G	consensus_score=277.4	frequency=1	major_base=G	major_cov=54/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/41
RA	7658	.	3	80887	0	G	T	consensus_score=211.1	frequency=1	major_base=T	major_cov=29/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/49
RA	7659	.	3	82004	0	G	T	consensus_score=177.8	frequency=1	major_base=T	major_cov=26/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/40
RA	7660	.	3	82535	0	A	.	consensus_score=456.8	frequency=1	major_base=.	major_cov=56/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/51
RA	7661	.	3	86395	0	C	T	consensus_score=312.2	frequency=1	major_base=T	major_cov=61/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/52
RA	7662	.	3	88062	0	C	T	consensus_score=291.0	frequency=1	major_base=T	major_cov=46/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/60
RA	7663	.	3	88588	0	A	T	bias_e_value=0.00124397	bias_p_value=5.91503e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=224.6	fisher_strand_p_value=2.32085e-11	frequency=2.137e-01	ks_quality_p_value=1	major_base=A	major_cov=65/27	major_frequency=7.863e-01	minor_base=T	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.137e-01	polymorphism_score=13.9	prediction=polymorphism	ref_cov=65/27	total_cov=65/52
RA	7664	.	3	88612	0	G	T	bias_e_value=1.9675e-06	bias_p_value=9.35543e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=204.7	fisher_strand_p_value=2.90824e-14	frequency=2.602e-01	ks_quality_p_value=1	major_base=G	major_cov=66/25	major_frequency=7.398e-01	minor_base=T	minor_cov=0/32	new_cov=0/32	polymorphism_frequency=2.602e-01	polymorphism_score=24.5	prediction=polymorphism	ref_cov=66/25	total_cov=66/57
RA	7665	.	3	89822	0	G	A	consensus_score=336.8	frequency=1	major_base=A	major_cov=67/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=67/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/57
RA	7666	.	3	91789	0	G	A	consensus_score=225.8	frequency=1	major_base=A	major_cov=55/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/28
RA	7667	.	3	93230	0	G	A	consensus_score=329.8	frequency=1	major_base=A	major_cov=71/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=71/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=71/52
RA	7668	.	3	95748	0	G	A	consensus_score=295.5	frequency=1	major_base=A	major_cov=59/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/50
RA	7669	.	3	96363	0	A	G	consensus_score=301.4	frequency=1	major_base=G	major_cov=53/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/50
RA	7670	.	3	97998	0	C	A	bias_e_value=2103060	bias_p_value=1	consensus_score=217.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=35/46	major_frequency=9.878e-01	minor_base=T	minor_cov=0/1	new_cov=35/46	polymorphism_frequency=9.878e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/47
RA	7671	.	3	98090	0	C	T	bias_e_value=1651450	bias_p_value=0.785262	consensus_score=212.4	fisher_strand_p_value=0.421053	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=31/44	major_frequency=9.868e-01	minor_base=C	minor_cov=1/0	new_cov=31/44	polymorphism_frequency=9.868e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=32/44
RA	7672	.	3	100178	0	G	A	consensus_score=239.7	frequency=1	major_base=A	major_cov=49/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/39
RA	7673	.	3	101257	0	C	T	consensus_score=218.6	frequency=1	major_base=T	major_cov=35/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/46
RA	7674	.	3	102039	0	G	A	consensus_score=283.8	frequency=1	major_base=A	major_cov=40/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/64
RA	7675	.	3	102201	0	G	A	consensus_score=182.2	frequency=1	major_base=A	major_cov=37/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/29
RA	7676	.	4	257	0	A	G	consensus_score=388.8	frequency=1	major_base=G	major_cov=68/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=68/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/67
RA	7677	.	4	271	0	A	G	consensus_score=383.5	frequency=1	major_base=G	major_cov=68/69	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=68/69	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/69
RA	7678	.	4	304	0	G	A	consensus_score=353.2	frequency=1	major_base=A	major_cov=68/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=68/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/58
RA	7679	.	4	323	0	C	A	consensus_score=329.8	frequency=1	major_base=A	major_cov=68/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=68/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/53
RA	7680	.	4	376	0	C	T	consensus_score=274.9	frequency=1	major_base=T	major_cov=53/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/44
RA	7681	.	4	380	0	A	G	consensus_score=278.9	frequency=1	major_base=G	major_cov=53/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/43
RA	7682	.	4	499	0	C	T	consensus_score=257.7	frequency=1	major_base=T	major_cov=56/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/39
RA	7683	.	4	500	0	A	G	consensus_score=274.5	frequency=1	major_base=G	major_cov=56/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/39
RA	7684	.	4	529	0	C	T	consensus_score=264.8	frequency=1	major_base=T	major_cov=58/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/39
RA	7685	.	4	635	0	G	A	consensus_score=276.7	frequency=1	major_base=A	major_cov=48/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/48
RA	7686	.	4	638	0	G	A	consensus_score=259.0	frequency=1	major_base=A	major_cov=48/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/48
RA	7687	.	4	1236	0	T	A	consensus_score=248.0	frequency=1	major_base=A	major_cov=46/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/45
RA	7688	.	4	1557	0	C	G	consensus_score=222.7	frequency=1	major_base=G	major_cov=27/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/52
RA	7689	.	4	1587	0	T	C	bias_e_value=2103060	bias_p_value=1	consensus_score=185.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=20/49	major_frequency=9.857e-01	minor_base=T	minor_cov=0/1	new_cov=20/49	polymorphism_frequency=9.857e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=20/50
RA	7690	.	4	2201	0	C	A	consensus_score=233.9	frequency=1	major_base=A	major_cov=23/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/62
RA	7691	.	4	2295	0	C	T	consensus_score=175.9	frequency=1	major_base=T	major_cov=19/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/45
RA	7692	.	4	2952	0	C	G	consensus_score=191.7	frequency=1	major_base=G	major_cov=43/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/24
RA	7693	.	4	3209	0	G	A	consensus_score=362.2	frequency=1	major_base=A	major_cov=71/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=71/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=71/61
RA	7694	.	4	3406	0	T	C	consensus_score=233.8	frequency=1	major_base=C	major_cov=48/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/37
RA	7695	.	4	3410	0	T	C	consensus_score=237.5	frequency=1	major_base=C	major_cov=48/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/37
RA	7696	.	4	3454	0	G	A	consensus_score=273.8	frequency=1	major_base=A	major_cov=49/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/48
RA	7697	.	4	3466	0	T	C	consensus_score=284.1	frequency=1	major_base=C	major_cov=50/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/48
RA	7698	.	4	3469	0	C	T	bias_e_value=1765300	bias_p_value=0.839396	consensus_score=259.9	fisher_strand_p_value=0.489796	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=50/47	major_frequency=9.898e-01	minor_base=C	minor_cov=0/1	new_cov=50/47	polymorphism_frequency=9.898e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=50/48
RA	7699	.	4	3496	0	A	G	consensus_score=317.3	frequency=1	major_base=G	major_cov=57/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/57
RA	7700	.	4	3517	0	T	C	consensus_score=325.0	frequency=1	major_base=C	major_cov=54/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/63
RA	7701	.	4	3589	0	T	C	consensus_score=338.4	frequency=1	major_base=C	major_cov=64/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/52
RA	7702	.	4	3616	0	T	C	consensus_score=288.4	frequency=1	major_base=C	major_cov=51/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/52
RA	7703	.	4	3628	0	C	T	consensus_score=268.6	frequency=1	major_base=T	major_cov=49/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/50
RA	7704	.	4	3631	0	T	A	consensus_score=275.1	frequency=1	major_base=A	major_cov=49/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/50
RA	7705	.	4	3637	0	A	G	consensus_score=264.5	frequency=1	major_base=G	major_cov=46/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/50
RA	7706	.	4	3641	0	C	T	consensus_score=256.6	frequency=1	major_base=T	major_cov=46/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/50
RA	7707	.	4	3668	1	.	A	consensus_score=242.7	frequency=1	major_base=A	major_cov=43/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/46
RA	7708	.	4	3675	0	G	A	consensus_score=242.3	frequency=1	major_base=A	major_cov=43/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/46
RA	7709	.	4	3676	0	G	A	consensus_score=241.8	frequency=1	major_base=A	major_cov=43/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/46
RA	7710	.	4	3742	0	T	C	consensus_score=260.3	frequency=1	major_base=C	major_cov=39/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/51
RA	7711	.	4	3775	0	G	A	consensus_score=233.8	frequency=1	major_base=A	major_cov=36/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/50
RA	7712	.	4	3928	0	A	G	bias_e_value=1594710	bias_p_value=0.758282	consensus_score=283.9	fisher_strand_p_value=0.454545	frequency=1	ks_quality_p_value=0.860468	major_base=G	major_cov=44/54	major_frequency=9.899e-01	minor_base=T	minor_cov=1/0	new_cov=44/54	polymorphism_frequency=9.899e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=0/0	total_cov=45/54
RA	7713	.	4	4015	0	C	T	consensus_score=302.5	frequency=1	major_base=T	major_cov=51/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/59
RA	7714	.	4	4061	0	C	T	bias_e_value=1723310	bias_p_value=0.819433	consensus_score=294.2	fisher_strand_p_value=0.462963	frequency=1	ks_quality_p_value=0.999827	major_base=T	major_cov=49/58	major_frequency=9.907e-01	minor_base=A	minor_cov=1/0	new_cov=49/58	polymorphism_frequency=9.907e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/58
RA	7715	.	4	4102	0	G	A	bias_e_value=2103060	bias_p_value=1	consensus_score=297.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=49/59	major_frequency=9.908e-01	minor_base=T	minor_cov=0/1	new_cov=49/59	polymorphism_frequency=9.908e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/60
RA	7716	.	4	4132	0	A	C	consensus_score=299.7	frequency=1	major_base=C	major_cov=48/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/55
RA	7717	.	4	4142	0	T	A	consensus_score=277.2	frequency=1	major_base=A	major_cov=48/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/52
RA	7718	.	4	4143	0	C	T	consensus_score=283.4	frequency=1	major_base=T	major_cov=48/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/52
RA	7719	.	4	4157	0	T	C	consensus_score=266.5	frequency=1	major_base=C	major_cov=45/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/49
RA	7720	.	4	4159	0	G	A	consensus_score=263.6	frequency=1	major_base=A	major_cov=45/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/49
RA	7721	.	4	4165	0	G	A	bias_e_value=1716700	bias_p_value=0.816288	consensus_score=225.6	fisher_strand_p_value=0.458824	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=38/46	major_frequency=9.882e-01	minor_base=G	minor_cov=1/0	new_cov=38/46	polymorphism_frequency=9.882e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=39/46
RA	7722	.	4	4166	0	C	T	consensus_score=228.4	frequency=1	major_base=T	major_cov=39/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/46
RA	7723	.	4	4168	0	C	A	consensus_score=231.4	frequency=1	major_base=A	major_cov=39/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/46
RA	7724	.	4	4171	0	T	G	consensus_score=243.0	frequency=1	major_base=G	major_cov=39/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/46
RA	7725	.	4	4183	0	T	C	bias_e_value=1648360	bias_p_value=0.78379	consensus_score=254.0	fisher_strand_p_value=0.419355	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=38/54	major_frequency=9.892e-01	minor_base=T	minor_cov=1/0	new_cov=38/54	polymorphism_frequency=9.892e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=39/54
RA	7726	.	4	4200	0	A	G	consensus_score=236.4	frequency=1	major_base=G	major_cov=31/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/54
RA	7727	.	4	4357	0	T	C	consensus_score=338.0	frequency=1	major_base=C	major_cov=51/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/66
RA	7728	.	4	4431	0	C	T	consensus_score=373.1	frequency=1	major_base=T	major_cov=55/74	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/74	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/74
RA	7729	.	4	4474	0	C	T	consensus_score=281.6	frequency=1	major_base=T	major_cov=43/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/60
RA	7730	.	4	4515	0	T	C	consensus_score=266.6	frequency=1	major_base=C	major_cov=33/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/64
RA	7731	.	4	4519	0	G	C	consensus_score=280.8	frequency=1	major_base=C	major_cov=32/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/64
RA	7732	.	4	4618	0	T	C	consensus_score=298.1	frequency=1	major_base=C	major_cov=44/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/62
RA	7733	.	4	4672	0	T	G	consensus_score=357.7	frequency=1	major_base=G	major_cov=54/74	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/74	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/74
RA	7734	.	4	4743	0	C	T	consensus_score=389.5	frequency=1	major_base=T	major_cov=55/79	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/79	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/79
RA	7735	.	4	4798	0	T	C	consensus_score=375.1	frequency=1	major_base=C	major_cov=56/78	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/78	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/78
RA	7736	.	4	4902	0	C	T	consensus_score=243.1	frequency=1	major_base=T	major_cov=41/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/48
RA	7737	.	4	4917	0	G	C	consensus_score=248.0	frequency=1	major_base=C	major_cov=43/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/46
RA	7738	.	4	4950	0	T	C	consensus_score=254.7	frequency=1	major_base=C	major_cov=44/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/46
RA	7739	.	4	5110	0	C	A	consensus_score=242.2	frequency=1	major_base=A	major_cov=48/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/40
RA	7740	.	4	5240	0	C	T	consensus_score=251.8	frequency=1	major_base=T	major_cov=54/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/39
RA	7741	.	4	5255	0	C	A	consensus_score=234.7	frequency=1	major_base=A	major_cov=49/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/39
RA	7742	.	4	5284	0	T	A	consensus_score=269.5	frequency=1	major_base=A	major_cov=51/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/48
RA	7743	.	4	5308	0	A	C	consensus_score=267.9	frequency=1	major_base=C	major_cov=47/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/51
RA	7744	.	4	5386	0	C	T	consensus_score=324.8	frequency=1	major_base=T	major_cov=58/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/56
RA	7745	.	4	5434	0	A	G	consensus_score=324.1	frequency=1	major_base=G	major_cov=54/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/57
RA	7746	.	4	5568	0	G	A	consensus_score=270.3	frequency=1	major_base=A	major_cov=57/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/38
RA	7747	.	4	5618	0	T	C	consensus_score=274.9	frequency=1	major_base=C	major_cov=53/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/41
RA	7748	.	4	5668	0	T	G	consensus_score=245.2	frequency=1	major_base=G	major_cov=48/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/37
RA	7749	.	4	5669	0	T	C	consensus_score=238.1	frequency=1	major_base=C	major_cov=48/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/37
RA	7750	.	4	5671	0	A	G	consensus_score=246.1	frequency=1	major_base=G	major_cov=48/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/37
RA	7751	.	4	5689	0	C	T	consensus_score=253.2	frequency=1	major_base=T	major_cov=52/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/37
RA	7752	.	4	5848	0	T	C	consensus_score=272.5	frequency=1	major_base=C	major_cov=56/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/39
RA	7753	.	4	5851	0	A	G	consensus_score=269.8	frequency=1	major_base=G	major_cov=56/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/39
RA	7754	.	4	6126	0	A	G	bias_e_value=2103050	bias_p_value=0.999998	consensus_score=281.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998146	major_base=G	major_cov=50/48	major_frequency=9.899e-01	minor_base=A	minor_cov=1/0	new_cov=50/48	polymorphism_frequency=9.899e-01	polymorphism_score=-5.3	prediction=consensus	ref_cov=1/0	total_cov=51/48
RA	7755	.	4	6136	0	C	G	bias_e_value=2103060	bias_p_value=1	consensus_score=311.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999839	major_base=G	major_cov=55/56	major_frequency=9.911e-01	minor_base=A	minor_cov=0/1	new_cov=55/56	polymorphism_frequency=9.911e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/57
RA	7756	.	4	6166	0	T	C	bias_e_value=2103060	bias_p_value=1	consensus_score=301.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999333	major_base=C	major_cov=52/57	major_frequency=9.909e-01	minor_base=A	minor_cov=0/1	new_cov=52/57	polymorphism_frequency=9.909e-01	polymorphism_score=-5.1	prediction=consensus	ref_cov=0/0	total_cov=52/58
RA	7757	.	4	6181	0	A	G	consensus_score=322.7	frequency=1	major_base=G	major_cov=51/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/64
RA	7758	.	4	6232	0	C	T	bias_e_value=1709650	bias_p_value=0.812935	consensus_score=333.8	fisher_strand_p_value=0.454545	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=54/66	major_frequency=9.917e-01	minor_base=C	minor_cov=1/0	new_cov=54/66	polymorphism_frequency=9.917e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=55/66
RA	7759	.	4	6238	0	G	T	bias_e_value=2103060	bias_p_value=1	consensus_score=355.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=56/69	major_frequency=9.921e-01	minor_base=A	minor_cov=0/1	new_cov=56/69	polymorphism_frequency=9.921e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/70
RA	7760	.	4	6241	0	T	C	consensus_score=360.6	frequency=1	major_base=C	major_cov=56/70	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/70	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/70
RA	7761	.	4	6250	0	C	T	consensus_score=342.2	frequency=1	major_base=T	major_cov=54/68	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/68	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/68
RA	7762	.	4	6251	0	T	G	consensus_score=348.4	frequency=1	major_base=G	major_cov=54/68	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/68	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/68
RA	7763	.	4	6424	0	A	G	consensus_score=297.6	frequency=1	major_base=G	major_cov=56/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/49
RA	7764	.	4	6506	0	C	T	consensus_score=269.0	frequency=1	major_base=T	major_cov=50/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/47
RA	7765	.	4	6542	0	A	C	consensus_score=303.3	frequency=1	major_base=C	major_cov=57/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/50
RA	7766	.	4	6702	0	A	G	consensus_score=297.6	frequency=1	major_base=G	major_cov=53/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/51
RA	7767	.	4	6772	0	C	G	consensus_score=250.2	frequency=1	major_base=G	major_cov=46/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/44
RA	7768	.	4	7070	0	C	G	consensus_score=155.2	frequency=1	major_base=G	major_cov=55/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/4
RA	7769	.	4	7081	0	T	C	consensus_score=150.2	frequency=1	major_base=C	major_cov=52/1	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/1	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/1
RA	7770	.	4	7085	0	G	A	bias_e_value=2103060	bias_p_value=1	consensus_score=143.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=51/0	major_frequency=9.808e-01	minor_base=C	minor_cov=1/0	new_cov=51/0	polymorphism_frequency=9.808e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/0
RA	7771	.	4	7089	0	A	G	consensus_score=132.0	frequency=1	major_base=G	major_cov=49/0	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/0	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/0
RA	7772	.	4	7091	0	A	G	consensus_score=126.8	frequency=1	major_base=G	major_cov=49/0	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/0	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/0
RA	7773	.	4	7097	0	C	T	bias_e_value=2103060	bias_p_value=1	consensus_score=144.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=53/5	major_frequency=9.831e-01	minor_base=C	minor_cov=1/0	new_cov=53/5	polymorphism_frequency=9.831e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=54/5
RA	7774	.	4	7100	0	C	T	consensus_score=158.9	frequency=1	major_base=T	major_cov=53/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/5
RA	7775	.	4	7106	0	T	C	consensus_score=171.9	frequency=1	major_base=C	major_cov=55/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/7
RA	7776	.	4	7124	0	T	C	consensus_score=172.5	frequency=1	major_base=C	major_cov=52/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/11
RA	7777	.	4	7769	0	A	G	consensus_score=374.0	frequency=1	major_base=G	major_cov=62/71	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/71	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/71
RA	7778	.	4	8383	0	A	C	consensus_score=297.5	frequency=1	major_base=C	major_cov=47/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/59
RA	7779	.	4	8616	0	C	T	bias_e_value=2103060	bias_p_value=1	consensus_score=223.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=41/41	major_frequency=9.880e-01	minor_base=G	minor_cov=1/0	new_cov=41/41	polymorphism_frequency=9.880e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/41
RA	7780	.	4	8916	0	C	T	consensus_score=350.6	frequency=1	major_base=T	major_cov=53/75	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/75	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/75
RA	7781	.	4	9374	0	A	C	consensus_score=393.2	frequency=1	major_base=C	major_cov=62/75	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/75	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/75
RA	7782	.	4	9701	0	A	G	bias_e_value=2103050	bias_p_value=0.999999	consensus_score=375.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998309	major_base=G	major_cov=72/65	major_frequency=9.928e-01	minor_base=C	minor_cov=1/0	new_cov=72/65	polymorphism_frequency=9.928e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=73/65
RA	7783	.	4	10078	0	A	C	bias_e_value=4.06726e-05	bias_p_value=1.93397e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=158.8	fisher_strand_p_value=6.66027e-13	frequency=3.455e-01	ks_quality_p_value=1	major_base=A	major_cov=47/25	major_frequency=6.545e-01	minor_base=C	minor_cov=0/38	new_cov=0/38	polymorphism_frequency=3.455e-01	polymorphism_score=31.4	prediction=polymorphism	ref_cov=47/25	total_cov=47/63
RA	7784	.	4	10616	0	C	T	consensus_score=272.5	frequency=1	major_base=T	major_cov=41/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/59
RA	7785	.	4	10771	0	A	C	consensus_score=231.9	frequency=1	major_base=C	major_cov=34/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/50
RA	7786	.	4	11691	0	A	G	consensus_score=237.6	frequency=1	major_base=G	major_cov=44/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/41
RA	7787	.	4	12460	0	C	T	consensus_score=230.0	frequency=1	major_base=T	major_cov=42/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/42
RA	7788	.	4	13057	0	C	T	consensus_score=121.5	frequency=1	major_base=T	major_cov=21/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/25
RA	7789	.	4	13796	0	C	T	consensus_score=313.2	frequency=1	major_base=T	major_cov=56/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/60
RA	7790	.	4	14011	0	G	.	bias_e_value=2102990	bias_p_value=0.999966	consensus_score=394.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.991798	major_base=.	major_cov=47/46	major_frequency=9.894e-01	minor_base=T	minor_cov=0/1	new_cov=47/46	polymorphism_frequency=9.894e-01	polymorphism_score=-2.6	prediction=consensus	ref_cov=0/0	total_cov=47/47
RA	7791	.	4	14018	0	A	G	consensus_score=274.9	frequency=1	major_base=G	major_cov=50/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/46
RA	7792	.	4	14053	0	G	T	consensus_score=280.8	frequency=1	major_base=T	major_cov=45/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/54
RA	7793	.	4	14085	0	G	A	consensus_score=269.1	frequency=1	major_base=A	major_cov=46/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/53
RA	7794	.	4	14229	0	C	T	consensus_score=280.3	frequency=1	major_base=T	major_cov=48/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/54
RA	7795	.	4	15154	0	A	C	consensus_score=243.0	frequency=1	major_base=C	major_cov=48/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/37
RA	7796	.	4	15413	0	A	G	consensus_score=260.0	frequency=1	major_base=G	major_cov=52/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/40
RA	7797	.	4	16189	0	T	C	consensus_score=270.3	frequency=1	major_base=C	major_cov=40/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/55
RA	7798	.	4	16609	0	G	A	consensus_score=295.0	frequency=1	major_base=A	major_cov=54/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/50
RA	7799	.	4	16941	0	T	C	consensus_score=299.3	frequency=1	major_base=C	major_cov=60/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/48
RA	7800	.	4	17406	0	A	G	consensus_score=336.1	frequency=1	major_base=G	major_cov=61/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/61
RA	7801	.	4	17617	0	C	T	consensus_score=274.9	frequency=1	major_base=T	major_cov=37/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/63
RA	7802	.	4	18680	0	C	T	consensus_score=252.9	frequency=1	major_base=T	major_cov=49/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/44
RA	7803	.	4	19666	0	T	G	consensus_score=291.9	frequency=1	major_base=G	major_cov=45/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/57
RA	7804	.	4	19680	0	A	G	consensus_score=292.1	frequency=1	major_base=G	major_cov=45/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/57
RA	7805	.	4	20493	0	C	T	consensus_score=160.6	frequency=1	major_base=T	major_cov=32/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/28
RA	7806	.	4	22776	0	G	A	consensus_score=223.1	frequency=1	major_base=A	major_cov=37/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/45
RA	7807	.	4	22857	0	A	G	consensus_score=308.4	frequency=1	major_base=G	major_cov=60/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/47
RA	7808	.	4	23298	0	G	.	consensus_score=158.9	frequency=1	major_base=.	major_cov=20/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/19
RA	7809	.	4	25128	0	T	C	bias_e_value=2102920	bias_p_value=0.999935	consensus_score=245.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.988611	major_base=C	major_cov=45/47	major_frequency=9.892e-01	minor_base=A	minor_cov=0/1	new_cov=45/47	polymorphism_frequency=9.892e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/48
RA	7810	.	4	30576	0	T	G	bias_e_value=2102770	bias_p_value=0.999862	consensus_score=282.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.983441	major_base=G	major_cov=56/42	major_frequency=9.899e-01	minor_base=T	minor_cov=1/0	new_cov=56/42	polymorphism_frequency=9.899e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=1/0	total_cov=57/42
RA	7811	.	4	32243	0	T	C	consensus_score=378.3	frequency=1	major_base=C	major_cov=61/75	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/75	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/75
RA	7812	.	4	32375	0	A	G	consensus_score=362.3	frequency=1	major_base=G	major_cov=57/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/67
RA	7813	.	4	32614	0	G	A	consensus_score=222.5	frequency=1	major_base=A	major_cov=44/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/38
RA	7814	.	4	33493	0	T	C	consensus_score=268.1	frequency=1	major_base=C	major_cov=47/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/47
RA	7815	.	4	36135	0	G	A	consensus_score=313.2	frequency=1	major_base=A	major_cov=69/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=69/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=69/47
RA	7816	.	4	36756	0	A	T	consensus_score=297.0	frequency=1	major_base=T	major_cov=52/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/52
RA	7817	.	4	36978	0	A	G	consensus_score=304.7	frequency=1	major_base=G	major_cov=49/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/61
RA	7818	.	4	37762	0	C	T	consensus_score=234.4	frequency=1	major_base=T	major_cov=47/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/40
RA	7819	.	4	38142	0	T	C	consensus_score=230.5	frequency=1	major_base=C	major_cov=55/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/28
RA	7820	.	4	38349	0	G	A	consensus_score=250.7	frequency=1	major_base=A	major_cov=39/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/50
RA	7821	.	4	40883	0	A	G	consensus_score=326.2	frequency=1	major_base=G	major_cov=66/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/48
RA	7822	.	4	41795	0	G	A	consensus_score=246.4	frequency=1	major_base=A	major_cov=44/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/46
RA	7823	.	4	42398	0	G	A	consensus_score=262.9	frequency=1	major_base=A	major_cov=52/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/44
RA	7824	.	4	43391	0	C	A	consensus_score=27.9	frequency=1	major_base=A	major_cov=5/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/7
RA	7825	.	4	44521	0	C	T	bias_e_value=2.34986	bias_p_value=1.11735e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=150.5	fisher_strand_p_value=6.35916e-08	frequency=2.233e-01	ks_quality_p_value=1	major_base=C	major_cov=48/32	major_frequency=7.767e-01	minor_base=T	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=2.233e-01	polymorphism_score=18.5	prediction=polymorphism	ref_cov=48/32	total_cov=48/55
RA	7826	.	4	46447	0	C	T	consensus_score=275.8	frequency=1	major_base=T	major_cov=38/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/58
RA	7827	.	4	46493	0	C	T	bias_e_value=0.00313097	bias_p_value=1.48877e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=93.8	fisher_strand_p_value=6.1337e-11	frequency=2.800e-01	ks_quality_p_value=0.989683	major_base=C	major_cov=11/43	major_frequency=7.200e-01	minor_base=T	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.800e-01	polymorphism_score=20.1	prediction=polymorphism	ref_cov=11/43	total_cov=33/43
RA	7828	.	4	46502	0	G	C	bias_e_value=2.58302	bias_p_value=1.22822e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=155.2	fisher_strand_p_value=7.23412e-08	frequency=2.179e-01	ks_quality_p_value=0.971821	major_base=G	major_cov=18/43	major_frequency=7.821e-01	minor_base=C	minor_cov=17/0	new_cov=17/0	polymorphism_frequency=2.179e-01	polymorphism_score=10.9	prediction=polymorphism	ref_cov=18/43	total_cov=35/43
RA	7829	.	5	733	0	T	C	bias_e_value=2098720	bias_p_value=0.997939	consensus_score=366.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.936488	major_base=C	major_cov=65/67	major_frequency=9.925e-01	minor_base=G	minor_cov=0/1	new_cov=65/67	polymorphism_frequency=9.925e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=0/0	total_cov=65/68
RA	7830	.	5	1154	0	A	G	bias_e_value=1752670	bias_p_value=0.83339	consensus_score=364.9	fisher_strand_p_value=0.481481	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=70/64	major_frequency=9.926e-01	minor_base=C	minor_cov=0/1	new_cov=70/64	polymorphism_frequency=9.926e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=70/65
RA	7831	.	5	1331	0	T	C	consensus_score=428.4	frequency=1	major_base=C	major_cov=78/77	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=78/77	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=78/77
RA	7832	.	5	1594	0	T	C	consensus_score=415.1	frequency=1	major_base=C	major_cov=76/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=76/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=76/67
RA	7833	.	5	2225	0	C	T	bias_e_value=1634520	bias_p_value=0.777212	consensus_score=316.4	fisher_strand_p_value=0.423423	frequency=1	ks_quality_p_value=0.972697	major_base=T	major_cov=64/46	major_frequency=9.910e-01	minor_base=.	minor_cov=0/1	new_cov=64/46	polymorphism_frequency=9.910e-01	polymorphism_score=-3.6	prediction=consensus	ref_cov=0/0	total_cov=64/47
RA	7834	.	5	4090	0	A	G	consensus_score=362.9	frequency=1	major_base=G	major_cov=60/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/66
RA	7835	.	5	4191	0	C	A	consensus_score=345.6	frequency=1	major_base=A	major_cov=65/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/62
RA	7836	.	5	4636	0	A	G	consensus_score=311.9	frequency=1	major_base=G	major_cov=59/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/53
RA	7837	.	5	5420	0	A	G	consensus_score=339.2	frequency=1	major_base=G	major_cov=71/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=71/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=71/51
RA	7838	.	5	7498	0	T	C	consensus_score=406.8	frequency=1	major_base=C	major_cov=67/77	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=67/77	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/77
RA	7839	.	5	7889	0	T	G	bias_e_value=1741700	bias_p_value=0.828174	consensus_score=253.5	fisher_strand_p_value=0.495091	frequency=1	ks_quality_p_value=0.958241	major_base=G	major_cov=46/45	major_frequency=9.785e-01	minor_base=A	minor_cov=2/0	new_cov=46/45	polymorphism_frequency=9.785e-01	polymorphism_score=-5.4	prediction=consensus	ref_cov=0/0	total_cov=48/45
RA	7840	.	5	11197	0	G	T	consensus_score=334.4	frequency=1	major_base=T	major_cov=63/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/54
RA	7841	.	5	13274	0	G	A	consensus_score=349.1	frequency=1	major_base=A	major_cov=62/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/60
RA	7842	.	5	13714	0	C	T	consensus_score=359.9	frequency=1	major_base=T	major_cov=58/72	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/72	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/72
RA	7843	.	5	14069	0	T	C	consensus_score=208.7	frequency=1	major_base=C	major_cov=44/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/38
RA	7844	.	5	15914	0	T	C	consensus_score=156.2	frequency=1	major_base=C	major_cov=9/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/45
RA	7845	.	5	16941	0	T	C	consensus_score=342.3	frequency=1	major_base=C	major_cov=58/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/59
RA	7846	.	5	18431	0	T	C	consensus_score=272.7	frequency=1	major_base=C	major_cov=49/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/51
RA	7847	.	5	20932	0	A	G	bias_e_value=7.35844e-10	bias_p_value=3.49893e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=116.7	fisher_strand_p_value=8.68546e-18	frequency=3.111e-01	ks_quality_p_value=1	major_base=A	major_cov=6/56	major_frequency=6.889e-01	minor_base=G	minor_cov=28/0	new_cov=28/0	polymorphism_frequency=3.111e-01	polymorphism_score=21.8	prediction=polymorphism	ref_cov=6/56	total_cov=34/56
RA	7848	.	5	20983	0	C	T	bias_e_value=0.00220698	bias_p_value=1.04942e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=145.0	fisher_strand_p_value=4.2163e-11	frequency=2.366e-01	ks_quality_p_value=1	major_base=C	major_cov=17/54	major_frequency=7.634e-01	minor_base=T	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.366e-01	polymorphism_score=12.2	prediction=polymorphism	ref_cov=17/54	total_cov=39/54
RA	7849	.	5	22110	0	C	A	consensus_score=306.9	frequency=1	major_base=A	major_cov=57/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/56
RA	7850	.	5	22350	1	.	T	consensus_score=325.6	frequency=1	major_base=T	major_cov=49/72	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/72	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/72
RA	7851	.	5	22822	0	A	G	consensus_score=296.6	frequency=1	major_base=G	major_cov=54/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/47
RA	7852	.	5	23996	0	C	A	consensus_score=312.7	frequency=1	major_base=A	major_cov=58/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/54
RA	7853	.	5	24288	0	C	T	consensus_score=157.8	frequency=1	major_base=T	major_cov=24/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/32
RA	7854	.	5	24971	0	A	C	consensus_score=274.4	frequency=1	major_base=C	major_cov=56/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/46
RA	7855	.	5	25077	0	C	G	consensus_score=239.7	frequency=1	major_base=G	major_cov=38/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/46
RA	7856	.	5	27126	0	G	T	consensus_score=253.9	frequency=1	major_base=T	major_cov=44/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/47
RA	7857	.	5	27411	0	A	G	consensus_score=236.1	frequency=1	major_base=G	major_cov=48/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/35
RA	7858	.	5	27845	0	T	C	bias_e_value=2103060	bias_p_value=1	consensus_score=322.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=59/56	major_frequency=9.914e-01	minor_base=T	minor_cov=1/0	new_cov=59/56	polymorphism_frequency=9.914e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=60/56
RA	7859	.	5	27992	0	T	G	consensus_score=276.4	frequency=1	major_base=G	major_cov=48/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/53
RA	7860	.	5	28623	0	C	T	consensus_score=210.9	frequency=1	major_base=T	major_cov=41/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/34
RA	7861	.	5	29056	0	A	T	bias_e_value=8.18945e-05	bias_p_value=3.89407e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=201.5	fisher_strand_p_value=1.3754e-12	frequency=2.371e-01	ks_quality_p_value=1	major_base=A	major_cov=59/15	major_frequency=7.629e-01	minor_base=T	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=2.371e-01	polymorphism_score=10.9	prediction=polymorphism	ref_cov=59/15	total_cov=59/38
RA	7862	.	5	29078	0	C	T	bias_e_value=5.83255e-12	bias_p_value=2.77337e-18	consensus_reject=FREQUENCY_CUTOFF	consensus_score=96.3	fisher_strand_p_value=6.13055e-20	frequency=3.483e-01	ks_quality_p_value=1	major_base=C	major_cov=54/4	major_frequency=6.517e-01	minor_base=T	minor_cov=0/31	new_cov=0/31	polymorphism_frequency=3.483e-01	polymorphism_score=31.2	prediction=polymorphism	ref_cov=54/4	total_cov=54/36
RA	7863	.	5	29089	0	A	T	bias_e_value=0.000729602	bias_p_value=3.46924e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=187.0	fisher_strand_p_value=1.33219e-11	frequency=2.418e-01	ks_quality_p_value=1	major_base=A	major_cov=54/15	major_frequency=7.582e-01	minor_base=T	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.418e-01	polymorphism_score=11.0	prediction=polymorphism	ref_cov=54/15	total_cov=54/37
RA	7864	.	5	29114	0	G	T	bias_e_value=0.0736862	bias_p_value=3.50377e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=173.8	fisher_strand_p_value=1.65102e-09	frequency=2.174e-01	ks_quality_p_value=1	major_base=G	major_cov=52/20	major_frequency=7.826e-01	minor_base=T	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.174e-01	polymorphism_score=13.0	prediction=polymorphism	ref_cov=52/20	total_cov=52/40
RA	7865	.	5	29354	0	G	T	consensus_score=322.0	frequency=1	major_base=T	major_cov=66/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/50
RA	7866	.	5	29602	0	T	C	consensus_score=250.6	frequency=1	major_base=C	major_cov=42/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/45
RA	7867	.	5	29714	0	G	A	consensus_score=308.2	frequency=1	major_base=A	major_cov=61/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/46
RA	7868	.	5	30688	0	C	T	consensus_score=332.9	frequency=1	major_base=T	major_cov=70/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=70/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=70/51
RA	7869	.	5	31648	0	G	A	consensus_score=297.2	frequency=1	major_base=A	major_cov=55/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/52
RA	7870	.	5	32988	0	G	A	consensus_score=290.2	frequency=1	major_base=A	major_cov=56/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/51
RA	7871	.	5	33697	0	T	G	bias_e_value=1228700	bias_p_value=0.584243	consensus_reject=FREQUENCY_CUTOFF	consensus_score=154.7	fisher_strand_p_value=0.241218	frequency=2.604e-01	ks_quality_p_value=1	major_base=T	major_cov=34/37	major_frequency=7.396e-01	minor_base=G	minor_cov=8/17	new_cov=8/17	polymorphism_frequency=2.604e-01	polymorphism_score=10.6	prediction=polymorphism	ref_cov=34/37	total_cov=42/54
RA	7872	.	5	34675	0	G	A	consensus_score=245.6	frequency=1	major_base=A	major_cov=40/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/50
RA	7873	.	5	34739	1	.	T	bias_e_value=1815430	bias_p_value=0.863235	consensus_score=276.7	fisher_strand_p_value=0.525142	frequency=1	ks_quality_p_value=0.999575	major_base=T	major_cov=37/59	major_frequency=9.796e-01	minor_base=.	minor_cov=0/2	new_cov=37/59	polymorphism_frequency=9.796e-01	polymorphism_score=-1.9	prediction=consensus	ref_cov=0/2	total_cov=37/61
RA	7874	.	5	34959	0	T	G	bias_e_value=3.06652e-06	bias_p_value=1.45813e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=211.8	fisher_strand_p_value=4.59824e-14	frequency=2.742e-01	ks_quality_p_value=1	major_base=T	major_cov=27/63	major_frequency=7.258e-01	minor_base=G	minor_cov=34/0	new_cov=34/0	polymorphism_frequency=2.742e-01	polymorphism_score=18.6	prediction=polymorphism	ref_cov=27/63	total_cov=61/63
RA	7875	.	5	35022	0	T	G	bias_e_value=5.67057e-07	bias_p_value=2.69634e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=230.4	fisher_strand_p_value=8.06038e-15	frequency=3.252e-01	ks_quality_p_value=1	major_base=T	major_cov=26/57	major_frequency=6.748e-01	minor_base=G	minor_cov=40/0	new_cov=40/0	polymorphism_frequency=3.252e-01	polymorphism_score=11.3	prediction=polymorphism	ref_cov=26/57	total_cov=66/57
RA	7876	.	5	35806	0	G	A	consensus_score=180.9	frequency=1	major_base=A	major_cov=30/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/37
RA	7877	.	5	36513	0	T	C	consensus_score=321.7	frequency=1	major_base=C	major_cov=56/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/59
RA	7878	.	5	37353	0	G	A	consensus_score=332.1	frequency=1	major_base=A	major_cov=64/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/51
RA	7879	.	6	417	0	C	T	bias_e_value=1411970	bias_p_value=0.671388	consensus_score=347.3	fisher_strand_p_value=0.457364	frequency=1	ks_quality_p_value=0.67467	major_base=T	major_cov=70/58	major_frequency=9.922e-01	minor_base=G	minor_cov=0/1	new_cov=70/58	polymorphism_frequency=9.922e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=0/0	total_cov=70/59
RA	7880	.	6	723	0	T	C	bias_e_value=0.177153	bias_p_value=8.42359e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=119.7	fisher_strand_p_value=4.1495e-09	frequency=2.778e-01	ks_quality_p_value=1	major_base=T	major_cov=42/23	major_frequency=7.222e-01	minor_base=C	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.778e-01	polymorphism_score=15.2	prediction=polymorphism	ref_cov=42/23	total_cov=42/48
RA	7881	.	6	1684	0	T	G	consensus_score=314.3	frequency=1	major_base=G	major_cov=62/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/47
RA	7882	.	6	2192	0	T	C	consensus_score=289.3	frequency=1	major_base=C	major_cov=44/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/60
RA	7883	.	6	4050	0	C	T	consensus_score=329.5	frequency=1	major_base=T	major_cov=60/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/60
RA	7884	.	6	4645	0	C	A	consensus_score=232.9	frequency=1	major_base=A	major_cov=48/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/39
RA	7885	.	6	5527	0	G	A	consensus_score=217.4	frequency=1	major_base=A	major_cov=42/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/33
RA	7886	.	6	5911	0	T	G	consensus_score=341.0	frequency=1	major_base=G	major_cov=56/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/61
RA	7887	.	6	10383	0	G	A	consensus_score=160.0	frequency=1	major_base=A	major_cov=32/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/27
RA	7888	.	6	11703	0	A	G	consensus_score=232.2	frequency=1	major_base=G	major_cov=38/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/43
RA	7889	.	6	12974	0	T	C	consensus_score=88.8	frequency=1	major_base=C	major_cov=19/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/13
RA	7890	.	6	14212	0	A	C	consensus_score=298.6	frequency=1	major_base=C	major_cov=44/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/65
RA	7891	.	6	14223	0	A	T	bias_e_value=0.0414674	bias_p_value=1.97177e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=225.6	fisher_strand_p_value=9.03452e-10	frequency=2.069e-01	ks_quality_p_value=1	major_base=A	major_cov=26/66	major_frequency=7.931e-01	minor_base=T	minor_cov=23/1	new_cov=23/1	polymorphism_frequency=2.069e-01	polymorphism_score=18.6	prediction=polymorphism	ref_cov=26/66	total_cov=50/68
RA	7892	.	6	14972	0	T	C	consensus_score=238.8	frequency=1	major_base=C	major_cov=38/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/49
RA	7893	.	6	15016	0	T	G	bias_e_value=3.45311e-06	bias_p_value=1.64195e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=120.9	fisher_strand_p_value=5.19802e-14	frequency=3.478e-01	ks_quality_p_value=1	major_base=T	major_cov=9/51	major_frequency=6.522e-01	minor_base=G	minor_cov=30/2	new_cov=30/2	polymorphism_frequency=3.478e-01	polymorphism_score=21.9	prediction=polymorphism	ref_cov=9/51	total_cov=39/53
RA	7894	.	6	15090	0	T	G	bias_e_value=2.49858	bias_p_value=1.18807e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=138.6	fisher_strand_p_value=6.78677e-08	frequency=2.706e-01	ks_quality_p_value=1	major_base=T	major_cov=20/42	major_frequency=7.294e-01	minor_base=G	minor_cov=22/1	new_cov=22/1	polymorphism_frequency=2.706e-01	polymorphism_score=11.2	prediction=polymorphism	ref_cov=20/42	total_cov=42/43
RA	7895	.	6	15135	0	A	T	bias_e_value=0.000804381	bias_p_value=3.82482e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=135.7	fisher_strand_p_value=1.47448e-11	frequency=2.716e-01	ks_quality_p_value=1	major_base=A	major_cov=47/12	major_frequency=7.284e-01	minor_base=T	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.716e-01	polymorphism_score=14.8	prediction=polymorphism	ref_cov=47/12	total_cov=53/34
RA	7896	.	6	15313	0	T	C	consensus_score=301.6	frequency=1	major_base=C	major_cov=44/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/64
RA	7897	.	6	15445	0	G	T	consensus_score=337.0	frequency=1	major_base=T	major_cov=53/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/65
RA	7898	.	6	15488	0	G	T	consensus_score=307.3	frequency=1	major_base=T	major_cov=53/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/54
RA	7899	.	6	15691	0	C	A	consensus_score=237.5	frequency=1	major_base=A	major_cov=42/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/43
RA	7900	.	6	15850	0	T	G	bias_e_value=2000360	bias_p_value=0.951169	consensus_score=51.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.704231	major_base=G	major_cov=20/1	major_frequency=9.545e-01	minor_base=C	minor_cov=1/0	new_cov=20/1	polymorphism_frequency=9.545e-01	polymorphism_score=-3.2	prediction=consensus	ref_cov=0/0	total_cov=21/1
RA	7901	.	6	16314	0	C	T	consensus_score=359.0	frequency=1	major_base=T	major_cov=70/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=70/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=70/60
RA	7902	.	6	17373	0	G	T	consensus_score=417.1	frequency=1	major_base=T	major_cov=83/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=83/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=83/64
RA	7903	.	6	17730	0	T	C	consensus_score=348.5	frequency=1	major_base=C	major_cov=54/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/67
RA	7904	.	6	19259	0	A	G	consensus_score=343.2	frequency=1	major_base=G	major_cov=75/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=75/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=75/50
RA	7905	.	6	22280	0	A	C	consensus_score=308.9	frequency=1	major_base=C	major_cov=69/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=69/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=69/40
RA	7906	.	6	22297	0	A	G	consensus_score=319.3	frequency=1	major_base=G	major_cov=69/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=69/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=69/46
RA	7907	.	6	22846	0	G	A	consensus_score=420.5	frequency=1	major_base=A	major_cov=63/87	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/87	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/87
RA	7908	.	6	23513	0	G	A	consensus_score=356.3	frequency=1	major_base=A	major_cov=72/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=72/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=72/58
RA	7909	.	6	24595	0	C	T	consensus_score=316.1	frequency=1	major_base=T	major_cov=51/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/61
RA	7910	.	6	25159	0	A	C	consensus_score=246.9	frequency=1	major_base=C	major_cov=53/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/34
RA	7911	.	6	25202	0	G	A	consensus_score=281.8	frequency=1	major_base=A	major_cov=56/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/42
RA	7912	.	6	28271	0	T	C	consensus_score=302.1	frequency=1	major_base=C	major_cov=56/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/56
RA	7913	.	6	30120	0	C	T	consensus_score=333.2	frequency=1	major_base=T	major_cov=51/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/64
MC	7914	.	1	1	543	0	514	left_inside_cov=0	left_outside_cov=NA	right_inside_cov=25	right_outside_cov=27
MC	7915	.	1	15759	16146	0	0	left_inside_cov=0	left_outside_cov=115	right_inside_cov=0	right_outside_cov=115
MC	7916	.	1	31357	32877	0	0	left_inside_cov=1	left_outside_cov=118	right_inside_cov=0	right_outside_cov=122
MC	7917	.	1	59297	59302	0	0	left_inside_cov=4	left_outside_cov=111	right_inside_cov=0	right_outside_cov=107
MC	7918	.	1	118608	118624	0	0	left_inside_cov=0	left_outside_cov=61	right_inside_cov=0	right_outside_cov=61
MC	7919	.	1	153447	153485	0	0	left_inside_cov=0	left_outside_cov=122	right_inside_cov=0	right_outside_cov=123
MC	7920	.	1	153865	155324	0	0	left_inside_cov=0	left_outside_cov=115	right_inside_cov=0	right_outside_cov=115
MC	7921	.	1	155724	155744	0	0	left_inside_cov=0	left_outside_cov=51	right_inside_cov=0	right_outside_cov=51
MC	7922	.	1	304430	305430	0	0	left_inside_cov=0	left_outside_cov=80	right_inside_cov=0	right_outside_cov=81
MC	7923	.	1	310779	310784	0	0	left_inside_cov=0	left_outside_cov=78	right_inside_cov=0	right_outside_cov=78
MC	7924	.	1	347484	349150	0	0	left_inside_cov=21	left_outside_cov=26	right_inside_cov=25	right_outside_cov=26
MC	7925	.	1	475330	476211	0	0	left_inside_cov=24	left_outside_cov=26	right_inside_cov=25	right_outside_cov=26
MC	7926	.	1	501184	501848	0	0	left_inside_cov=25	left_outside_cov=26	right_inside_cov=25	right_outside_cov=28
MC	7927	.	1	518632	518646	0	0	left_inside_cov=0	left_outside_cov=60	right_inside_cov=0	right_outside_cov=60
MC	7928	.	1	566066	569085	0	0	left_inside_cov=23	left_outside_cov=29	right_inside_cov=25	right_outside_cov=26
MC	7929	.	1	605639	605934	0	0	left_inside_cov=25	left_outside_cov=26	right_inside_cov=25	right_outside_cov=30
MC	7930	.	1	856262	857925	0	0	left_inside_cov=24	left_outside_cov=26	right_inside_cov=22	right_outside_cov=26
MC	7931	.	1	877811	877878	0	0	left_inside_cov=0	left_outside_cov=94	right_inside_cov=0	right_outside_cov=93
MC	7932	.	1	907340	907465	0	0	left_inside_cov=25	left_outside_cov=26	right_inside_cov=23	right_outside_cov=26
MC	7933	.	1	907556	910178	0	0	left_inside_cov=25	left_outside_cov=26	right_inside_cov=25	right_outside_cov=26
MC	7934	.	1	911483	913837	0	0	left_inside_cov=25	left_outside_cov=26	right_inside_cov=25	right_outside_cov=26
MC	7935	.	1	923732	924150	0	0	left_inside_cov=0	left_outside_cov=49	right_inside_cov=0	right_outside_cov=38
MC	7936	.	1	926183	928779	0	0	left_inside_cov=25	left_outside_cov=26	right_inside_cov=22	right_outside_cov=32
MC	7937	.	1	1009698	1010001	0	0	left_inside_cov=24	left_outside_cov=26	right_inside_cov=25	right_outside_cov=26
MC	7938	.	1	1010036	1010676	0	0	left_inside_cov=0	left_outside_cov=41	right_inside_cov=0	right_outside_cov=44
MC	7939	.	1	1013721	1014052	0	0	left_inside_cov=0	left_outside_cov=35	right_inside_cov=0	right_outside_cov=31
MC	7940	.	1	1016059	1016907	0	0	left_inside_cov=0	left_outside_cov=33	right_inside_cov=0	right_outside_cov=33
MC	7941	.	1	1029859	1031037	0	0	left_inside_cov=25	left_outside_cov=26	right_inside_cov=24	right_outside_cov=26
MC	7942	.	1	1031466	1031476	0	0	left_inside_cov=0	left_outside_cov=32	right_inside_cov=0	right_outside_cov=32
MC	7943	.	1	1032751	1032765	0	0	left_inside_cov=0	left_outside_cov=53	right_inside_cov=0	right_outside_cov=53
MC	7944	.	1	1054853	1054862	0	0	left_inside_cov=0	left_outside_cov=66	right_inside_cov=0	right_outside_cov=66
MC	7945	.	1	1067730	1069652	1064	0	left_inside_cov=25	left_outside_cov=26	right_inside_cov=0	right_outside_cov=51
MC	7946	.	1	1136980	1137292	0	0	left_inside_cov=0	left_outside_cov=71	right_inside_cov=1	right_outside_cov=71
MC	7947	.	1	1137919	1140373	0	0	left_inside_cov=0	left_outside_cov=57	right_inside_cov=0	right_outside_cov=56
MC	7948	.	1	1141992	1143715	0	0	left_inside_cov=25	left_outside_cov=33	right_inside_cov=0	right_outside_cov=81
MC	7949	.	1	1183881	1183883	0	0	left_inside_cov=0	left_outside_cov=46	right_inside_cov=0	right_outside_cov=46
MC	7950	.	1	1191223	1195417	0	0	left_inside_cov=24	left_outside_cov=26	right_inside_cov=24	right_outside_cov=29
MC	7951	.	1	1198858	1198902	0	0	left_inside_cov=0	left_outside_cov=57	right_inside_cov=0	right_outside_cov=55
MC	7952	.	1	1307880	1307952	0	0	left_inside_cov=0	left_outside_cov=62	right_inside_cov=21	right_outside_cov=33
MC	7953	.	1	1329108	1329484	0	0	left_inside_cov=0	left_outside_cov=68	right_inside_cov=0	right_outside_cov=67
MC	7954	.	1	1333670	1334550	0	0	left_inside_cov=24	left_outside_cov=27	right_inside_cov=24	right_outside_cov=26
MC	7955	.	1	1337568	1338981	0	0	left_inside_cov=0	left_outside_cov=90	right_inside_cov=25	right_outside_cov=26
MC	7956	.	1	1339584	1341033	0	0	left_inside_cov=25	left_outside_cov=27	right_inside_cov=0	right_outside_cov=90
MC	7957	.	1	1404358	1406222	0	0	left_inside_cov=0	left_outside_cov=102	right_inside_cov=0	right_outside_cov=102
MC	7958	.	1	1478278	1478546	0	0	left_inside_cov=25	left_outside_cov=26	right_inside_cov=24	right_outside_cov=29
MC	7959	.	1	1487966	1489763	0	0	left_inside_cov=22	left_outside_cov=26	right_inside_cov=24	right_outside_cov=26
MC	7960	.	1	1525706	1525715	0	0	left_inside_cov=0	left_outside_cov=92	right_inside_cov=0	right_outside_cov=91
MC	7961	.	1	1559366	1566185	0	0	left_inside_cov=25	left_outside_cov=26	right_inside_cov=25	right_outside_cov=27
MC	7962	.	1	1647537	1648006	38	0	left_inside_cov=25	left_outside_cov=26	right_inside_cov=20	right_outside_cov=34
MC	7963	.	10	1	1369	0	0	left_inside_cov=0	left_outside_cov=NA	right_inside_cov=0	right_outside_cov=NA
MC	7964	.	11	1	1225	0	0	left_inside_cov=0	left_outside_cov=NA	right_inside_cov=0	right_outside_cov=NA
MC	7965	.	13	1	414	0	0	left_inside_cov=0	left_outside_cov=NA	right_inside_cov=0	right_outside_cov=NA
MC	7966	.	14	1	192	0	0	left_inside_cov=0	left_outside_cov=NA	right_inside_cov=0	right_outside_cov=NA
MC	7967	.	16	1	105	0	0	left_inside_cov=0	left_outside_cov=NA	right_inside_cov=0	right_outside_cov=NA
MC	7968	.	2	84961	84964	0	0	left_inside_cov=0	left_outside_cov=166	right_inside_cov=0	right_outside_cov=166
MC	7969	.	2	155102	164185	0	0	left_inside_cov=0	left_outside_cov=79	right_inside_cov=0	right_outside_cov=79
MC	7970	.	2	165144	166752	0	0	left_inside_cov=0	left_outside_cov=130	right_inside_cov=0	right_outside_cov=130
MC	7971	.	2	170265	170309	0	0	left_inside_cov=0	left_outside_cov=96	right_inside_cov=0	right_outside_cov=95
MC	7972	.	3	20634	20775	0	0	left_inside_cov=42	left_outside_cov=43	right_inside_cov=0	right_outside_cov=84
MC	7973	.	3	79033	79051	0	0	left_inside_cov=0	left_outside_cov=85	right_inside_cov=0	right_outside_cov=85
MC	7974	.	3	79622	79623	0	0	left_inside_cov=0	left_outside_cov=86	right_inside_cov=0	right_outside_cov=82
MC	7975	.	3	97283	97345	0	0	left_inside_cov=0	left_outside_cov=60	right_inside_cov=0	right_outside_cov=60
MC	7976	.	4	25236	25238	0	0	left_inside_cov=0	left_outside_cov=83	right_inside_cov=0	right_outside_cov=83
MC	7977	.	4	47299	47299	0	0	left_inside_cov=0	left_outside_cov=69	right_inside_cov=0	right_outside_cov=NA
MC	7978	.	5	1	138	0	0	left_inside_cov=0	left_outside_cov=NA	right_inside_cov=54	right_outside_cov=60
MC	7979	.	5	2583	3911	0	0	left_inside_cov=0	left_outside_cov=148	right_inside_cov=0	right_outside_cov=150
MC	7980	.	5	23050	23442	0	0	left_inside_cov=0	left_outside_cov=120	right_inside_cov=0	right_outside_cov=120
MC	7981	.	7	1	2132	0	0	left_inside_cov=0	left_outside_cov=NA	right_inside_cov=0	right_outside_cov=NA
MC	7982	.	8	1	1637	0	0	left_inside_cov=0	left_outside_cov=NA	right_inside_cov=0	right_outside_cov=NA
MC	7983	.	9	850	1416	565	0	left_inside_cov=60	left_outside_cov=63	right_inside_cov=0	right_outside_cov=NA
JC	7984	.	1	28	1	1	1657571	1	-1	alignment_overlap=-1	coverage_minus=55	coverage_plus=59	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=213	key=1__28__1__1__1657571__1__-1__G__251__251__1__0	max_left=249	max_left_minus=249	max_left_plus=247	max_min_left=113	max_min_left_minus=113	max_min_left_plus=72	max_min_right=122	max_min_right_minus=122	max_min_right_plus=113	max_pos_hash_score=428	max_right=246	max_right_minus=238	max_right_plus=246	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.42	new_junction_read_count=119	polymorphism_frequency=1.000e+00	pos_hash_score=66	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=114	unique_read_sequence=G
JC	7985	.	1	28	1	6	31282	-1	-30	alignment_overlap=-30	coverage_minus=58	coverage_plus=61	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=184	key=1__28__1__6__31282__-1__-30__ATTTATAGCTAGACGTTGTCTAGCTATAAA__251__251__1__0	max_left=213	max_left_minus=179	max_left_plus=213	max_min_left=105	max_min_left_minus=105	max_min_left_plus=102	max_min_right=108	max_min_right_minus=108	max_min_right_plus=82	max_pos_hash_score=370	max_right=218	max_right_minus=217	max_right_plus=218	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.39	new_junction_read_count=120	polymorphism_frequency=1.000e+00	pos_hash_score=72	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=119	unique_read_sequence=ATTTATAGCTAGACGTTGTCTAGCTATAAA
JC	7986	.	1	15758	-1	1	16147	1	0	alignment_overlap=32	coverage_minus=56	coverage_plus=51	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=182	key=1__15758__-1__1__16115__1__32____251__251__0__0	max_left=214	max_left_minus=213	max_left_plus=214	max_min_left=107	max_min_left_minus=107	max_min_left_plus=89	max_min_right=107	max_min_right_minus=107	max_min_right_plus=100	max_pos_hash_score=366	max_right=215	max_right_minus=215	max_right_plus=215	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.50	new_junction_read_count=107	polymorphism_frequency=1.000e+00	pos_hash_score=67	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=32	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=182	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=107
JC	7987	.	1	30771	-1	1	30772	1	-4	alignment_overlap=-4	coverage_minus=79	coverage_plus=69	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=210	key=1__30771__-1__1__30772__1__-4__GAAA__251__251__0__0	max_left=246	max_left_minus=244	max_left_plus=246	max_min_left=101	max_min_left_minus=91	max_min_left_plus=101	max_min_right=114	max_min_right_minus=112	max_min_right_plus=114	max_pos_hash_score=414	max_right=244	max_right_minus=233	max_right_plus=244	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.76	new_junction_read_count=145	polymorphism_frequency=1.000e+00	pos_hash_score=94	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=4	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=210	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=148	unique_read_sequence=GAAA
JC	7988	.	1	31356	-1	1	32878	1	-11	alignment_overlap=-11	coverage_minus=55	coverage_plus=56	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=203	key=1__31356__-1__1__32878__1__-11__TCCGGCAGTAG__251__251__0__0	max_left=235	max_left_minus=233	max_left_plus=235	max_min_left=115	max_min_left_minus=115	max_min_left_plus=115	max_min_right=117	max_min_right_minus=117	max_min_right_plus=109	max_pos_hash_score=408	max_right=238	max_right_minus=228	max_right_plus=238	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.39	new_junction_read_count=111	polymorphism_frequency=9.957e-01	pos_hash_score=76	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.01	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=111	unique_read_sequence=TCCGGCAGTAG
JC	7989	.	1	33038	1	1	33252	1	0	alignment_overlap=12	coverage_minus=3	coverage_plus=0	flanking_left=251	flanking_right=251	frequency=3.165e-02	junction_possible_overlap_registers=202	key=1__33038__1__1__33240__1__12____251__251__0__0	max_left=155	max_left_minus=155	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=87	max_min_right_minus=87	max_min_right_plus=0	max_pos_hash_score=406	max_right=87	max_right_minus=87	max_right_plus=0	neg_log10_pos_hash_p_value=7.6	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.165e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.15	side_1_overlap=12	side_1_possible_overlap_registers=214	side_1_read_count=97	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.16	side_2_overlap=0	side_2_possible_overlap_registers=202	side_2_read_count=92	side_2_redundant=0	total_non_overlap_reads=3
JC	7990	.	1	59303	1	1	59296	-1	0	alignment_overlap=14	coverage_minus=56	coverage_plus=43	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=200	key=1__59303__1__1__59310__-1__14____251__251__0__0	max_left=235	max_left_minus=232	max_left_plus=235	max_min_left=107	max_min_left_minus=107	max_min_left_plus=106	max_min_right=118	max_min_right_minus=117	max_min_right_plus=118	max_pos_hash_score=402	max_right=235	max_right_minus=235	max_right_plus=212	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.27	new_junction_read_count=100	polymorphism_frequency=1.000e+00	pos_hash_score=69	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=14	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=200	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=99
JC	7991	.	1	74877	1	1	74984	1	0	alignment_overlap=7	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=2.663e-02	junction_possible_overlap_registers=207	key=1__74877__1__1__74977__1__7____251__251__0__0	max_left=68	max_left_minus=68	max_left_plus=68	max_min_left=68	max_min_left_minus=68	max_min_left_plus=68	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=416	max_right=141	max_right_minus=141	max_right_plus=141	neg_log10_pos_hash_p_value=7.7	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=2.663e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.33	side_1_overlap=7	side_1_possible_overlap_registers=214	side_1_read_count=112	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.36	side_2_overlap=0	side_2_possible_overlap_registers=207	side_2_read_count=111	side_2_redundant=0	total_non_overlap_reads=3
JC	7992	.	1	90181	1	3	20776	1	0	alignment_overlap=40	coverage_minus=27	coverage_plus=31	flanking_left=251	flanking_right=251	frequency=6.160e-01	junction_possible_overlap_registers=174	key=1__90181__1__3__20736__1__40____251__251__0__0	max_left=211	max_left_minus=205	max_left_plus=211	max_min_left=105	max_min_left_minus=97	max_min_left_plus=105	max_min_right=92	max_min_right_minus=92	max_min_right_plus=44	max_pos_hash_score=350	max_right=207	max_right_minus=201	max_right_plus=207	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.81	new_junction_read_count=60	polymorphism_frequency=6.160e-01	pos_hash_score=41	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.09	side_1_overlap=40	side_1_possible_overlap_registers=214	side_1_read_count=92	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=174	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=58
JC	7993	.	1	118607	-1	1	118625	1	0	alignment_overlap=2	coverage_minus=30	coverage_plus=31	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=212	key=1__118607__-1__1__118623__1__2____251__251__0__0	max_left=238	max_left_minus=231	max_left_plus=238	max_min_left=120	max_min_left_minus=120	max_min_left_plus=104	max_min_right=117	max_min_right_minus=117	max_min_right_plus=101	max_pos_hash_score=426	max_right=241	max_right_minus=211	max_right_plus=241	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.73	new_junction_read_count=61	polymorphism_frequency=1.000e+00	pos_hash_score=47	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=2	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=212	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=61
JC	7994	.	1	121647	-1	1	122127	-1	0	alignment_overlap=15	coverage_minus=2	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=3.554e-02	junction_possible_overlap_registers=199	key=1__121647__-1__1__122142__-1__15____251__251__0__0	max_left=194	max_left_minus=165	max_left_plus=194	max_min_left=93	max_min_left_minus=0	max_min_left_plus=93	max_min_right=71	max_min_right_minus=71	max_min_right_plus=42	max_pos_hash_score=400	max_right=184	max_right_minus=71	max_right_plus=184	neg_log10_pos_hash_p_value=7.0	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=3.554e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.97	side_1_overlap=15	side_1_possible_overlap_registers=214	side_1_read_count=166	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.50	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=117	side_2_redundant=0	total_non_overlap_reads=5
JC	7995	.	1	140550	1	1	140557	-1	-10	alignment_overlap=-10	coverage_minus=43	coverage_plus=43	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=204	key=1__140550__1__1__140557__-1__-10__GCCACGCTCA__251__251__0__1	max_left=238	max_left_minus=235	max_left_plus=238	max_min_left=109	max_min_left_minus=108	max_min_left_plus=109	max_min_right=115	max_min_right_minus=115	max_min_right_plus=109	max_pos_hash_score=410	max_right=240	max_right_minus=240	max_right_plus=238	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.08	new_junction_read_count=87	polymorphism_frequency=9.012e-01	pos_hash_score=63	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.12	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=10	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=86	unique_read_sequence=GCCACGCTCA
JC	7996	.	1	153446	-1	1	153486	1	0	alignment_overlap=5	coverage_minus=61	coverage_plus=58	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=209	key=1__153446__-1__1__153481__1__5____251__251__0__0	max_left=243	max_left_minus=243	max_left_plus=242	max_min_left=118	max_min_left_minus=118	max_min_left_plus=105	max_min_right=120	max_min_right_minus=99	max_min_right_plus=120	max_pos_hash_score=420	max_right=240	max_right_minus=238	max_right_plus=240	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.46	new_junction_read_count=120	polymorphism_frequency=1.000e+00	pos_hash_score=73	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=5	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=119
JC	7997	.	1	153864	-1	1	155325	1	-33	alignment_overlap=-33	coverage_minus=33	coverage_plus=53	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=181	key=1__153864__-1__1__155325__1__-33__ACCGATTACGTCAGCGGCTTGTGTAACATCGGT__251__251__0__0	max_left=216	max_left_minus=216	max_left_plus=214	max_min_left=103	max_min_left_minus=100	max_min_left_plus=103	max_min_right=94	max_min_right_minus=92	max_min_right_plus=94	max_pos_hash_score=364	max_right=200	max_right_minus=200	max_right_plus=188	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.21	new_junction_read_count=86	polymorphism_frequency=1.000e+00	pos_hash_score=59	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=86	unique_read_sequence=ACCGATTACGTCAGCGGCTTGTGTAACATCGGT
JC	7998	.	1	155723	-1	1	155745	1	0	alignment_overlap=16	coverage_minus=16	coverage_plus=30	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=198	key=1__155723__-1__1__155729__1__16____251__251__0__0	max_left=226	max_left_minus=226	max_left_plus=226	max_min_left=112	max_min_left_minus=112	max_min_left_plus=88	max_min_right=113	max_min_right_minus=113	max_min_right_plus=105	max_pos_hash_score=398	max_right=214	max_right_minus=123	max_right_plus=214	neg_log10_pos_hash_p_value=1.1	new_junction_coverage=0.60	new_junction_read_count=47	polymorphism_frequency=1.000e+00	pos_hash_score=34	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=16	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=198	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=46
JC	7999	.	1	159019	1	1	159075	1	0	alignment_overlap=8	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=2.622e-02	junction_possible_overlap_registers=206	key=1__159019__1__1__159067__1__8____251__251__0__0	max_left=238	max_left_minus=238	max_left_plus=190	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=91	max_min_right_minus=5	max_min_right_plus=91	max_pos_hash_score=414	max_right=91	max_right_minus=5	max_right_plus=91	neg_log10_pos_hash_p_value=7.7	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=2.622e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.33	side_1_overlap=8	side_1_possible_overlap_registers=214	side_1_read_count=112	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.42	side_2_overlap=0	side_2_possible_overlap_registers=206	side_2_read_count=115	side_2_redundant=0	total_non_overlap_reads=3
JC	8000	.	1	203642	-1	1	1032483	-1	0	alignment_overlap=1	coverage_minus=26	coverage_plus=23	flanking_left=251	flanking_right=251	frequency=7.030e-01	junction_possible_overlap_registers=213	key=1__203642__-1__1__1032484__-1__1____251__251__0__0	max_left=240	max_left_minus=217	max_left_plus=240	max_min_left=115	max_min_left_minus=107	max_min_left_plus=115	max_min_right=123	max_min_right_minus=123	max_min_right_plus=107	max_pos_hash_score=428	max_right=215	max_right_minus=189	max_right_plus=215	neg_log10_pos_hash_p_value=1.1	new_junction_coverage=0.62	new_junction_read_count=52	polymorphism_frequency=7.030e-01	pos_hash_score=37	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.14	side_1_overlap=1	side_1_possible_overlap_registers=214	side_1_read_count=12	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.38	side_2_overlap=0	side_2_possible_overlap_registers=213	side_2_read_count=32	side_2_redundant=0	total_non_overlap_reads=49
JC	8001	.	1	223288	-1	1	223779	-1	0	alignment_overlap=14	coverage_minus=0	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=3.174e-02	junction_possible_overlap_registers=200	key=1__223288__-1__1__223793__-1__14____251__251__0__0	max_left=191	max_left_minus=0	max_left_plus=191	max_min_left=56	max_min_left_minus=0	max_min_left_plus=56	max_min_right=82	max_min_right_minus=0	max_min_right_plus=82	max_pos_hash_score=402	max_right=180	max_right_minus=0	max_right_plus=180	neg_log10_pos_hash_p_value=7.6	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.174e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.90	side_1_overlap=14	side_1_possible_overlap_registers=214	side_1_read_count=76	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.42	side_2_overlap=0	side_2_possible_overlap_registers=200	side_2_read_count=112	side_2_redundant=0	total_non_overlap_reads=3
JC	8002	.	1	263660	1	1	264472	1	0	alignment_overlap=6	coverage_minus=4	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=5.277e-02	junction_possible_overlap_registers=208	key=1__263660__1__1__264466__1__6____251__251__0__0	max_left=107	max_left_minus=107	max_left_plus=107	max_min_left=107	max_min_left_minus=107	max_min_left_plus=107	max_min_right=65	max_min_right_minus=65	max_min_right_plus=0	max_pos_hash_score=418	max_right=138	max_right_minus=138	max_right_plus=115	neg_log10_pos_hash_p_value=7.8	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=5.277e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.06	side_1_overlap=6	side_1_possible_overlap_registers=214	side_1_read_count=89	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.14	side_2_overlap=0	side_2_possible_overlap_registers=208	side_2_read_count=93	side_2_redundant=0	total_non_overlap_reads=5
JC	8003	.	1	304429	-1	1	305431	1	0	alignment_overlap=5	coverage_minus=39	coverage_plus=37	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=209	key=1__304429__-1__1__305426__1__5____251__251__0__0	max_left=242	max_left_minus=240	max_left_plus=242	max_min_left=120	max_min_left_minus=116	max_min_left_plus=120	max_min_right=122	max_min_right_minus=122	max_min_right_plus=115	max_pos_hash_score=420	max_right=243	max_right_minus=238	max_right_plus=243	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.92	new_junction_read_count=76	polymorphism_frequency=1.000e+00	pos_hash_score=59	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=5	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=76
JC	8004	.	1	307079	-1	1	307080	1	-5	alignment_overlap=-5	coverage_minus=52	coverage_plus=53	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=209	key=1__307079__-1__1__307080__1__-5__GGGCG__251__251__0__0	max_left=233	max_left_minus=206	max_left_plus=233	max_min_left=114	max_min_left_minus=114	max_min_left_plus=111	max_min_right=121	max_min_right_minus=112	max_min_right_plus=121	max_pos_hash_score=400	max_right=240	max_right_minus=229	max_right_plus=240	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.30	new_junction_read_count=107	polymorphism_frequency=1.000e+00	pos_hash_score=68	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=10	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=204	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=105	unique_read_sequence=GGGCG
JC	8005	.	1	307505	-1	1	307506	1	-4	alignment_overlap=-4	coverage_minus=27	coverage_plus=41	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=210	key=1__307505__-1__1__307506__1__-4__TTAC__251__251__0__0	max_left=243	max_left_minus=243	max_left_plus=239	max_min_left=122	max_min_left_minus=118	max_min_left_plus=122	max_min_right=105	max_min_right_minus=97	max_min_right_plus=105	max_pos_hash_score=414	max_right=234	max_right_minus=201	max_right_plus=234	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.93	new_junction_read_count=77	polymorphism_frequency=1.000e+00	pos_hash_score=46	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=4	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=210	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=68	unique_read_sequence=TTAC
JC	8006	.	1	310778	-1	1	310785	1	0	alignment_overlap=7	coverage_minus=32	coverage_plus=40	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=207	key=1__310778__-1__1__310778__1__7____251__251__0__0	max_left=237	max_left_minus=230	max_left_plus=237	max_min_left=121	max_min_left_minus=121	max_min_left_plus=109	max_min_right=88	max_min_right_minus=85	max_min_right_plus=88	max_pos_hash_score=416	max_right=240	max_right_minus=235	max_right_plus=240	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.90	new_junction_read_count=73	polymorphism_frequency=1.000e+00	pos_hash_score=52	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=7	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=207	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=72
JC	8007	.	1	337981	1	1	338117	1	0	alignment_overlap=8	coverage_minus=3	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=5.732e-02	junction_possible_overlap_registers=206	key=1__337981__1__1__338109__1__8____251__251__0__0	max_left=113	max_left_minus=113	max_left_plus=54	max_min_left=113	max_min_left_minus=113	max_min_left_plus=54	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=414	max_right=187	max_right_minus=187	max_right_plus=165	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=5.732e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.77	side_1_overlap=8	side_1_possible_overlap_registers=214	side_1_read_count=65	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.85	side_2_overlap=0	side_2_possible_overlap_registers=206	side_2_read_count=69	side_2_redundant=0	total_non_overlap_reads=4
JC	8008	.	1	416043	-1	1	416171	-1	0	alignment_overlap=13	coverage_minus=2	coverage_plus=5	flanking_left=251	flanking_right=251	frequency=9.515e-02	junction_possible_overlap_registers=201	key=1__416043__-1__1__416184__-1__13____251__251__0__0	max_left=205	max_left_minus=160	max_left_plus=205	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=82	max_min_right_minus=82	max_min_right_plus=43	max_pos_hash_score=404	max_right=82	max_right_minus=82	max_right_plus=43	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.09	new_junction_read_count=7	polymorphism_frequency=9.515e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.95	side_1_overlap=13	side_1_possible_overlap_registers=214	side_1_read_count=80	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.73	side_2_overlap=0	side_2_possible_overlap_registers=201	side_2_read_count=58	side_2_redundant=0	total_non_overlap_reads=7
JC	8009	.	1	445555	-1	1	445706	-1	0	alignment_overlap=12	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.966e-02	junction_possible_overlap_registers=202	key=1__445555__-1__1__445718__-1__12____251__251__0__0	max_left=152	max_left_minus=152	max_left_plus=146	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=117	max_min_right_minus=87	max_min_right_plus=117	max_pos_hash_score=406	max_right=117	max_right_minus=87	max_right_plus=117	neg_log10_pos_hash_p_value=7.6	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.966e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.00	side_1_overlap=12	side_1_possible_overlap_registers=214	side_1_read_count=84	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.83	side_2_overlap=0	side_2_possible_overlap_registers=202	side_2_read_count=66	side_2_redundant=0	total_non_overlap_reads=3
JC	8010	.	1	463617	-1	1	463775	-1	0	alignment_overlap=5	coverage_minus=2	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.522e-02	junction_possible_overlap_registers=209	key=1__463617__-1__1__463780__-1__5____251__251__0__0	max_left=187	max_left_minus=107	max_left_plus=187	max_min_left=106	max_min_left_minus=106	max_min_left_plus=0	max_min_right=59	max_min_right_minus=59	max_min_right_plus=59	max_pos_hash_score=420	max_right=118	max_right_minus=118	max_right_plus=59	neg_log10_pos_hash_p_value=7.8	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=3.522e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.44	side_1_overlap=5	side_1_possible_overlap_registers=214	side_1_read_count=121	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.23	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=101	side_2_redundant=0	total_non_overlap_reads=4
JC	8011	.	1	507030	-1	1	508138	-1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=4.076e-02	junction_possible_overlap_registers=204	key=1__507030__-1__1__508148__-1__10____251__251__0__0	max_left=164	max_left_minus=164	max_left_plus=46	max_min_left=46	max_min_left_minus=46	max_min_left_plus=46	max_min_right=77	max_min_right_minus=77	max_min_right_plus=0	max_pos_hash_score=410	max_right=168	max_right_minus=150	max_right_plus=168	neg_log10_pos_hash_p_value=7.7	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=4.076e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.96	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=81	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.80	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=64	side_2_redundant=0	total_non_overlap_reads=3
JC	8012	.	1	512575	1	1	512700	1	0	alignment_overlap=10	coverage_minus=4	coverage_plus=0	flanking_left=251	flanking_right=251	frequency=4.780e-02	junction_possible_overlap_registers=204	key=1__512575__1__1__512690__1__10____251__251__0__0	max_left=105	max_left_minus=105	max_left_plus=0	max_min_left=105	max_min_left_minus=105	max_min_left_plus=0	max_min_right=45	max_min_right_minus=45	max_min_right_plus=0	max_pos_hash_score=410	max_right=164	max_right_minus=164	max_right_plus=0	neg_log10_pos_hash_p_value=7.7	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=4.780e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.93	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=78	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.06	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=85	side_2_redundant=0	total_non_overlap_reads=4
JC	8013	.	1	518647	1	1	518631	-1	0	alignment_overlap=30	coverage_minus=18	coverage_plus=35	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=184	key=1__518647__1__1__518661__-1__30____251__251__0__0	max_left=220	max_left_minus=215	max_left_plus=220	max_min_left=105	max_min_left_minus=99	max_min_left_plus=105	max_min_right=98	max_min_right_minus=98	max_min_right_plus=92	max_pos_hash_score=370	max_right=214	max_right_minus=214	max_right_plus=196	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=0.73	new_junction_read_count=53	polymorphism_frequency=1.000e+00	pos_hash_score=37	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=30	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=184	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=53
JC	8014	.	1	522245	1	1	522636	1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=2.996e-02	junction_possible_overlap_registers=204	key=1__522245__1__1__522626__1__10____251__251__0__0	max_left=208	max_left_minus=208	max_left_plus=75	max_min_left=75	max_min_left_minus=0	max_min_left_plus=75	max_min_right=50	max_min_right_minus=50	max_min_right_plus=0	max_pos_hash_score=410	max_right=165	max_right_minus=50	max_right_plus=165	neg_log10_pos_hash_p_value=7.7	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=2.996e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.21	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=102	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.21	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=97	side_2_redundant=0	total_non_overlap_reads=3
JC	8015	.	1	525744	1	1	525934	1	0	alignment_overlap=6	coverage_minus=3	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=3.533e-02	junction_possible_overlap_registers=208	key=1__525744__1__1__525928__1__6____251__251__0__0	max_left=179	max_left_minus=179	max_left_plus=160	max_min_left=47	max_min_left_minus=47	max_min_left_plus=0	max_min_right=84	max_min_right_minus=74	max_min_right_plus=84	max_pos_hash_score=418	max_right=198	max_right_minus=198	max_right_plus=84	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=3.533e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.52	side_1_overlap=6	side_1_possible_overlap_registers=214	side_1_read_count=128	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.15	side_2_overlap=0	side_2_possible_overlap_registers=208	side_2_read_count=94	side_2_redundant=0	total_non_overlap_reads=4
JC	8016	.	1	549186	1	1	549368	1	0	alignment_overlap=6	coverage_minus=3	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=6.091e-02	junction_possible_overlap_registers=208	key=1__549186__1__1__549362__1__6____251__251__0__0	max_left=138	max_left_minus=138	max_left_plus=97	max_min_left=97	max_min_left_minus=23	max_min_left_plus=97	max_min_right=108	max_min_right_minus=108	max_min_right_plus=0	max_pos_hash_score=418	max_right=188	max_right_minus=188	max_right_plus=148	neg_log10_pos_hash_p_value=7.8	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=6.091e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.70	side_1_overlap=6	side_1_possible_overlap_registers=214	side_1_read_count=59	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.81	side_2_overlap=0	side_2_possible_overlap_registers=208	side_2_read_count=66	side_2_redundant=0	total_non_overlap_reads=4
JC	8017	.	1	549212	1	1	549339	1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=6.008e-02	junction_possible_overlap_registers=204	key=1__549212__1__1__549329__1__10____251__251__0__0	max_left=108	max_left_minus=108	max_left_plus=108	max_min_left=108	max_min_left_minus=108	max_min_left_plus=0	max_min_right=101	max_min_right_minus=68	max_min_right_plus=101	max_pos_hash_score=410	max_right=133	max_right_minus=133	max_right_plus=101	neg_log10_pos_hash_p_value=7.7	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=6.008e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.72	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=61	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.84	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=67	side_2_redundant=0	total_non_overlap_reads=4
JC	8018	.	1	559055	-1	1	559056	1	-8	alignment_overlap=-8	coverage_minus=46	coverage_plus=47	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=206	key=1__559055__-1__1__559056__1__-8__GTCTGCAC__251__251__0__0	max_left=238	max_left_minus=234	max_left_plus=238	max_min_left=116	max_min_left_minus=116	max_min_left_plus=113	max_min_right=119	max_min_right_minus=119	max_min_right_plus=94	max_pos_hash_score=414	max_right=242	max_right_minus=242	max_right_plus=241	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.15	new_junction_read_count=93	polymorphism_frequency=1.000e+00	pos_hash_score=61	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=93	unique_read_sequence=GTCTGCAC
JC	8019	.	1	571912	-1	1	572236	-1	0	alignment_overlap=12	coverage_minus=3	coverage_plus=0	flanking_left=251	flanking_right=251	frequency=4.042e-02	junction_possible_overlap_registers=202	key=1__571912__-1__1__572248__-1__12____251__251__0__0	max_left=134	max_left_minus=134	max_left_plus=0	max_min_left=11	max_min_left_minus=11	max_min_left_plus=0	max_min_right=106	max_min_right_minus=106	max_min_right_plus=0	max_pos_hash_score=406	max_right=228	max_right_minus=228	max_right_plus=0	neg_log10_pos_hash_p_value=7.6	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=4.042e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.96	side_1_overlap=12	side_1_possible_overlap_registers=214	side_1_read_count=81	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.83	side_2_overlap=0	side_2_possible_overlap_registers=202	side_2_read_count=66	side_2_redundant=0	total_non_overlap_reads=3
JC	8020	.	1	623657	1	1	1202140	1	-1	alignment_overlap=-1	coverage_minus=8	coverage_plus=6	flanking_left=251	flanking_right=251	frequency=3.021e-01	junction_possible_overlap_registers=213	key=1__623657__1__1__1202140__1__-1__G__251__251__0__0	max_left=47	max_left_minus=37	max_left_plus=47	max_min_left=47	max_min_left_minus=37	max_min_left_plus=47	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=428	max_right=233	max_right_minus=233	max_right_plus=233	neg_log10_pos_hash_p_value=5.0	new_junction_coverage=0.17	new_junction_read_count=14	polymorphism_frequency=3.021e-01	pos_hash_score=10	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.77	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=65	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=14	unique_read_sequence=G
JC	8021	.	1	640289	-1	1	640290	1	-6	alignment_overlap=-6	coverage_minus=36	coverage_plus=32	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=208	key=1__640289__-1__1__640290__1__-6__TTAATG__251__251__0__0	max_left=244	max_left_minus=240	max_left_plus=244	max_min_left=119	max_min_left_minus=119	max_min_left_plus=105	max_min_right=121	max_min_right_minus=115	max_min_right_plus=121	max_pos_hash_score=408	max_right=241	max_right_minus=241	max_right_plus=209	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.89	new_junction_read_count=73	polymorphism_frequency=1.000e+00	pos_hash_score=53	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=5	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=209	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=68	unique_read_sequence=TTAATG
JC	8022	.	1	669993	1	2	176511	-1	-86	alignment_overlap=-86	coverage_minus=2	coverage_plus=4	flanking_left=251	flanking_right=251	frequency=2.067e-01	junction_possible_overlap_registers=128	key=1__669993__1__2__176511__-1__-86__CGACGCGCTGTCTATAAAACCCTACAACGGCGCGTCGTTGTGCCCGCGTATTATAGGTATTTACTAATTCTTTGCAAGAGTTTTTT__251__251__0__0	max_left=129	max_left_minus=85	max_left_plus=129	max_min_left=77	max_min_left_minus=0	max_min_left_plus=77	max_min_right=80	max_min_right_minus=80	max_min_right_plus=77	max_pos_hash_score=258	max_right=87	max_right_minus=80	max_right_plus=87	neg_log10_pos_hash_p_value=4.2	new_junction_coverage=0.10	new_junction_read_count=6	polymorphism_frequency=2.067e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.92	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=77	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=6	unique_read_sequence=CGACGCGCTGTCTATAAAACCCTACAACGGCGCGTCGTTGTGCCCGCGTATTATAGGTATTTACTAATTCTTTGCAAGAGTTTTTT
JC	8023	.	1	673420	1	1	673559	1	0	alignment_overlap=17	coverage_minus=9	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=NA	junction_possible_overlap_registers=197	key=1__673420__1__1__673542__1__17____251__251__1__1	max_left=217	max_left_minus=111	max_left_plus=217	max_min_left=111	max_min_left_minus=111	max_min_left_plus=15	max_min_right=108	max_min_right_minus=108	max_min_right_plus=107	max_pos_hash_score=396	max_right=138	max_right_minus=133	max_right_plus=138	neg_log10_pos_hash_p_value=5.0	new_junction_coverage=0.15	new_junction_read_count=12	polymorphism_frequency=NA	pos_hash_score=9	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=17	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=12
JC	8024	.	1	693781	1	1	693776	-1	0	alignment_overlap=19	coverage_minus=6	coverage_plus=9	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=195	key=1__693781__1__1__693795__-1__19____251__251__0__0	max_left=169	max_left_minus=130	max_left_plus=169	max_min_left=75	max_min_left_minus=39	max_min_left_plus=75	max_min_right=102	max_min_right_minus=102	max_min_right_plus=63	max_pos_hash_score=392	max_right=221	max_right_minus=198	max_right_plus=221	neg_log10_pos_hash_p_value=3.6	new_junction_coverage=0.20	new_junction_read_count=15	polymorphism_frequency=9.427e-01	pos_hash_score=14	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.02	side_1_overlap=19	side_1_possible_overlap_registers=214	side_1_read_count=2	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=195	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=15
JC	8025	.	1	750107	-1	1	750111	-1	0	alignment_overlap=13	coverage_minus=3	coverage_plus=0	flanking_left=251	flanking_right=251	frequency=4.295e-02	junction_possible_overlap_registers=201	key=1__750107__-1__1__750124__-1__13____251__251__0__0	max_left=123	max_left_minus=123	max_left_plus=0	max_min_left=75	max_min_left_minus=75	max_min_left_plus=0	max_min_right=114	max_min_right_minus=114	max_min_right_plus=0	max_pos_hash_score=404	max_right=237	max_right_minus=237	max_right_plus=0	neg_log10_pos_hash_p_value=7.6	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=4.295e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.84	side_1_overlap=13	side_1_possible_overlap_registers=214	side_1_read_count=71	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.85	side_2_overlap=0	side_2_possible_overlap_registers=201	side_2_read_count=67	side_2_redundant=0	total_non_overlap_reads=3
JC	8026	.	1	767699	-1	1	768049	-1	0	alignment_overlap=6	coverage_minus=0	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=3.350e-02	junction_possible_overlap_registers=208	key=1__767699__-1__1__768055__-1__6____251__251__0__0	max_left=170	max_left_minus=0	max_left_plus=170	max_min_left=84	max_min_left_minus=0	max_min_left_plus=84	max_min_right=75	max_min_right_minus=0	max_min_right_plus=75	max_pos_hash_score=418	max_right=239	max_right_minus=0	max_right_plus=239	neg_log10_pos_hash_p_value=7.8	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.350e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.22	side_1_overlap=6	side_1_possible_overlap_registers=214	side_1_read_count=103	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.89	side_2_overlap=0	side_2_possible_overlap_registers=208	side_2_read_count=73	side_2_redundant=0	total_non_overlap_reads=3
JC	8027	.	1	775757	1	1	776051	1	0	alignment_overlap=9	coverage_minus=2	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=4.281e-02	junction_possible_overlap_registers=205	key=1__775757__1__1__776042__1__9____251__251__0__0	max_left=174	max_left_minus=174	max_left_plus=110	max_min_left=96	max_min_left_minus=18	max_min_left_plus=96	max_min_right=67	max_min_right_minus=67	max_min_right_plus=44	max_pos_hash_score=412	max_right=146	max_right_minus=108	max_right_plus=146	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=4.281e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.16	side_1_overlap=9	side_1_possible_overlap_registers=214	side_1_read_count=98	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.05	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=85	side_2_redundant=0	total_non_overlap_reads=4
JC	8028	.	1	833836	-1	1	834088	-1	0	alignment_overlap=4	coverage_minus=3	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=5.282e-02	junction_possible_overlap_registers=210	key=1__833836__-1__1__834092__-1__4____251__251__0__0	max_left=241	max_left_minus=241	max_left_plus=96	max_min_left=97	max_min_left_minus=97	max_min_left_plus=96	max_min_right=18	max_min_right_minus=18	max_min_right_plus=0	max_pos_hash_score=422	max_right=163	max_right_minus=149	max_right_plus=163	neg_log10_pos_hash_p_value=6.8	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=5.282e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.06	side_1_overlap=4	side_1_possible_overlap_registers=214	side_1_read_count=89	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.11	side_2_overlap=0	side_2_possible_overlap_registers=210	side_2_read_count=92	side_2_redundant=0	total_non_overlap_reads=5
JC	8029	.	1	836498	1	1	836885	1	0	alignment_overlap=9	coverage_minus=3	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=5.748e-02	junction_possible_overlap_registers=205	key=1__836498__1__1__836876__1__9____251__251__0__0	max_left=210	max_left_minus=210	max_left_plus=165	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=110	max_min_right_minus=110	max_min_right_plus=86	max_pos_hash_score=412	max_right=110	max_right_minus=110	max_right_plus=86	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=5.748e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.20	side_1_overlap=9	side_1_possible_overlap_registers=214	side_1_read_count=101	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.24	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=100	side_2_redundant=0	total_non_overlap_reads=6
JC	8030	.	1	855268	-1	1	855272	1	0	alignment_overlap=0	coverage_minus=4	coverage_plus=4	flanking_left=251	flanking_right=251	frequency=1.429e-01	junction_possible_overlap_registers=214	key=1__855268__-1__1__855272__1__0____251__251__0__0	max_left=246	max_left_minus=246	max_left_plus=243	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=19	max_min_right_minus=19	max_min_right_plus=10	max_pos_hash_score=430	max_right=19	max_right_minus=19	max_right_plus=10	neg_log10_pos_hash_p_value=6.4	new_junction_coverage=0.10	new_junction_read_count=8	polymorphism_frequency=1.429e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.57	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=48	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.57	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=48	side_2_redundant=0	total_non_overlap_reads=8
JC	8031	.	1	868180	1	1	868872	1	0	alignment_overlap=7	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.005e-02	junction_possible_overlap_registers=207	key=1__868180__1__1__868865__1__7____251__251__0__0	max_left=156	max_left_minus=156	max_left_plus=70	max_min_left=70	max_min_left_minus=0	max_min_left_plus=70	max_min_right=88	max_min_right_minus=88	max_min_right_plus=0	max_pos_hash_score=416	max_right=195	max_right_minus=88	max_right_plus=195	neg_log10_pos_hash_p_value=7.7	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.005e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.20	side_1_overlap=7	side_1_possible_overlap_registers=214	side_1_read_count=101	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.18	side_2_overlap=0	side_2_possible_overlap_registers=207	side_2_read_count=96	side_2_redundant=0	total_non_overlap_reads=3
JC	8032	.	1	877810	-1	1	877879	1	0	alignment_overlap=32	coverage_minus=39	coverage_plus=35	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=182	key=1__877810__-1__1__877847__1__32____251__251__0__0	max_left=216	max_left_minus=216	max_left_plus=197	max_min_left=106	max_min_left_minus=96	max_min_left_plus=106	max_min_right=105	max_min_right_minus=105	max_min_right_plus=105	max_pos_hash_score=366	max_right=217	max_right_minus=217	max_right_plus=207	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.03	new_junction_read_count=74	polymorphism_frequency=1.000e+00	pos_hash_score=54	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=32	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=182	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=74
JC	8033	.	1	884042	1	1	884288	1	0	alignment_overlap=11	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.238e-02	junction_possible_overlap_registers=203	key=1__884042__1__1__884277__1__11____251__251__0__0	max_left=170	max_left_minus=170	max_left_plus=170	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=83	max_min_right_minus=69	max_min_right_plus=83	max_pos_hash_score=408	max_right=83	max_right_minus=69	max_right_plus=83	neg_log10_pos_hash_p_value=7.7	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.238e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.09	side_1_overlap=11	side_1_possible_overlap_registers=214	side_1_read_count=92	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.15	side_2_overlap=0	side_2_possible_overlap_registers=203	side_2_read_count=92	side_2_redundant=0	total_non_overlap_reads=3
JC	8034	.	1	890249	1	1	890376	1	0	alignment_overlap=5	coverage_minus=6	coverage_plus=0	flanking_left=251	flanking_right=251	frequency=5.864e-02	junction_possible_overlap_registers=209	key=1__890249__1__1__890371__1__5____251__251__0__0	max_left=119	max_left_minus=119	max_left_plus=0	max_min_left=117	max_min_left_minus=117	max_min_left_plus=0	max_min_right=59	max_min_right_minus=59	max_min_right_plus=0	max_pos_hash_score=420	max_right=129	max_right_minus=129	max_right_plus=0	neg_log10_pos_hash_p_value=7.8	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=5.864e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.20	side_1_overlap=5	side_1_possible_overlap_registers=214	side_1_read_count=101	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.14	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=94	side_2_redundant=0	total_non_overlap_reads=6
JC	8035	.	1	890253	-1	1	890370	-1	0	alignment_overlap=5	coverage_minus=2	coverage_plus=4	flanking_left=251	flanking_right=251	frequency=5.754e-02	junction_possible_overlap_registers=209	key=1__890253__-1__1__890375__-1__5____251__251__0__0	max_left=164	max_left_minus=124	max_left_plus=164	max_min_left=63	max_min_left_minus=58	max_min_left_plus=63	max_min_right=119	max_min_right_minus=119	max_min_right_plus=119	max_pos_hash_score=420	max_right=119	max_right_minus=119	max_right_plus=119	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=5.754e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.25	side_1_overlap=5	side_1_possible_overlap_registers=214	side_1_read_count=105	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.14	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=94	side_2_redundant=0	total_non_overlap_reads=6
JC	8036	.	1	907401	-1	1	907406	1	0	alignment_overlap=0	coverage_minus=15	coverage_plus=8	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=214	key=1__907401__-1__1__907406__1__0____251__251__0__0	max_left=231	max_left_minus=231	max_left_plus=211	max_min_left=123	max_min_left_minus=123	max_min_left_plus=105	max_min_right=74	max_min_right_minus=74	max_min_right_plus=69	max_pos_hash_score=430	max_right=244	max_right_minus=244	max_right_plus=163	neg_log10_pos_hash_p_value=2.7	new_junction_coverage=0.27	new_junction_read_count=23	polymorphism_frequency=1.000e+00	pos_hash_score=21	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=23
JC	8037	.	1	923731	-1	1	924151	1	-38	alignment_overlap=-38	coverage_minus=11	coverage_plus=22	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=176	key=1__923731__-1__1__924151__1__-38__TTATTATCAGCCAACGCCGTTATAAAAACGACACTTAC__251__251__0__0	max_left=211	max_left_minus=178	max_left_plus=211	max_min_left=105	max_min_left_minus=52	max_min_left_plus=105	max_min_right=90	max_min_right_minus=90	max_min_right_plus=83	max_pos_hash_score=346	max_right=195	max_right_minus=195	max_right_plus=195	neg_log10_pos_hash_p_value=1.3	new_junction_coverage=0.48	new_junction_read_count=33	polymorphism_frequency=1.000e+00	pos_hash_score=27	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=4	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=210	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=33	unique_read_sequence=TTATTATCAGCCAACGCCGTTATAAAAACGACACTTAC
JC	8038	.	1	941382	-1	1	941383	1	-13	alignment_overlap=-13	coverage_minus=40	coverage_plus=28	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=201	key=1__941382__-1__1__941383__1__-13__TCACTGTTGAAAT__251__251__0__0	max_left=237	max_left_minus=236	max_left_plus=237	max_min_left=115	max_min_left_minus=115	max_min_left_plus=106	max_min_right=113	max_min_right_minus=99	max_min_right_plus=113	max_pos_hash_score=402	max_right=235	max_right_minus=235	max_right_plus=202	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.86	new_junction_read_count=68	polymorphism_frequency=1.000e+00	pos_hash_score=47	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=1	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=213	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=68	unique_read_sequence=TCACTGTTGAAAT
JC	8039	.	1	945360	-1	1	945410	-1	0	alignment_overlap=22	coverage_minus=1	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=5.327e-02	junction_possible_overlap_registers=192	key=1__945360__-1__1__945432__-1__22____251__251__0__0	max_left=177	max_left_minus=157	max_left_plus=177	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=51	max_min_right_minus=45	max_min_right_plus=51	max_pos_hash_score=386	max_right=51	max_right_minus=45	max_right_plus=51	neg_log10_pos_hash_p_value=6.8	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=5.327e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.90	side_1_overlap=22	side_1_possible_overlap_registers=214	side_1_read_count=76	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.98	side_2_overlap=0	side_2_possible_overlap_registers=192	side_2_read_count=74	side_2_redundant=0	total_non_overlap_reads=4
JC	8040	.	1	952131	-1	1	952132	1	-6	alignment_overlap=-6	coverage_minus=40	coverage_plus=45	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=208	key=1__952131__-1__1__952132__1__-6__AGGCGC__251__251__0__0	max_left=237	max_left_minus=237	max_left_plus=235	max_min_left=118	max_min_left_minus=93	max_min_left_plus=118	max_min_right=114	max_min_right_minus=114	max_min_right_plus=105	max_pos_hash_score=418	max_right=241	max_right_minus=235	max_right_plus=241	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=1.04	new_junction_read_count=85	polymorphism_frequency=1.000e+00	pos_hash_score=53	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=85	unique_read_sequence=AGGCGC
JC	8041	.	1	991182	-1	1	991454	-1	0	alignment_overlap=8	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=6.660e-02	junction_possible_overlap_registers=206	key=1__991182__-1__1__991462__-1__8____251__251__0__0	max_left=127	max_left_minus=28	max_left_plus=127	max_min_left=28	max_min_left_minus=28	max_min_left_plus=0	max_min_right=79	max_min_right_minus=0	max_min_right_plus=79	max_pos_hash_score=414	max_right=134	max_right_minus=134	max_right_plus=79	neg_log10_pos_hash_p_value=7.7	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=6.660e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.61	side_1_overlap=8	side_1_possible_overlap_registers=214	side_1_read_count=51	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.43	side_2_overlap=0	side_2_possible_overlap_registers=206	side_2_read_count=35	side_2_redundant=0	total_non_overlap_reads=3
JC	8042	.	1	1009324	1	1	1009313	-1	0	alignment_overlap=27	coverage_minus=6	coverage_plus=13	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=187	key=1__1009324__1__1__1009340__-1__27____251__251__0__0	max_left=129	max_left_minus=117	max_left_plus=129	max_min_left=108	max_min_left_minus=103	max_min_left_plus=108	max_min_right=107	max_min_right_minus=107	max_min_right_plus=61	max_pos_hash_score=376	max_right=217	max_right_minus=217	max_right_plus=179	neg_log10_pos_hash_p_value=3.2	new_junction_coverage=0.30	new_junction_read_count=22	polymorphism_frequency=9.264e-01	pos_hash_score=15	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.05	side_1_overlap=27	side_1_possible_overlap_registers=214	side_1_read_count=4	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=187	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=19
JC	8043	.	1	1009463	-1	1	1009464	1	-9	alignment_overlap=-9	coverage_minus=18	coverage_plus=24	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=205	key=1__1009463__-1__1__1009464__1__-9__CAACTTACC__251__251__0__0	max_left=211	max_left_minus=211	max_left_plus=190	max_min_left=117	max_min_left_minus=117	max_min_left_plus=111	max_min_right=120	max_min_right_minus=120	max_min_right_plus=96	max_pos_hash_score=380	max_right=234	max_right_minus=234	max_right_plus=216	neg_log10_pos_hash_p_value=0.8	new_junction_coverage=0.50	new_junction_read_count=40	polymorphism_frequency=8.699e-01	pos_hash_score=37	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=16	side_1_coverage=0.08	side_1_overlap=0	side_1_possible_overlap_registers=198	side_1_read_count=6	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.07	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=6	side_2_redundant=0	total_non_overlap_reads=42	unique_read_sequence=CAACTTACC
JC	8044	.	1	1010035	-1	1	1010677	1	0	alignment_overlap=2	coverage_minus=21	coverage_plus=13	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=212	key=1__1010035__-1__1__1010675__1__2____251__251__0__0	max_left=141	max_left_minus=94	max_left_plus=141	max_min_left=105	max_min_left_minus=94	max_min_left_plus=105	max_min_right=98	max_min_right_minus=53	max_min_right_plus=98	max_pos_hash_score=426	max_right=246	max_right_minus=246	max_right_plus=246	neg_log10_pos_hash_p_value=1.8	new_junction_coverage=0.49	new_junction_read_count=41	polymorphism_frequency=1.000e+00	pos_hash_score=28	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=2	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=212	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=34
JC	8045	.	1	1012276	1	1	1012489	1	0	alignment_overlap=6	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=5.067e-02	junction_possible_overlap_registers=208	key=1__1012276__1__1__1012483__1__6____251__251__0__0	max_left=102	max_left_minus=102	max_left_plus=64	max_min_left=102	max_min_left_minus=102	max_min_left_plus=64	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=418	max_right=187	max_right_minus=143	max_right_plus=187	neg_log10_pos_hash_p_value=7.8	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=5.067e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.68	side_1_overlap=6	side_1_possible_overlap_registers=214	side_1_read_count=57	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.70	side_2_overlap=0	side_2_possible_overlap_registers=208	side_2_read_count=57	side_2_redundant=0	total_non_overlap_reads=3
JC	8046	.	1	1013720	-1	1	1014053	1	-22	alignment_overlap=-22	coverage_minus=13	coverage_plus=15	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=192	key=1__1013720__-1__1__1014053__1__-22__CATTCTAATGAACATATTTGGT__251__251__0__0	max_left=213	max_left_minus=146	max_left_plus=213	max_min_left=82	max_min_left_minus=64	max_min_left_plus=82	max_min_right=112	max_min_right_minus=106	max_min_right_plus=112	max_pos_hash_score=386	max_right=178	max_right_minus=148	max_right_plus=178	neg_log10_pos_hash_p_value=1.9	new_junction_coverage=0.37	new_junction_read_count=28	polymorphism_frequency=1.000e+00	pos_hash_score=24	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=28	unique_read_sequence=CATTCTAATGAACATATTTGGT
JC	8047	.	1	1016058	-1	1	1016908	1	0	alignment_overlap=2	coverage_minus=11	coverage_plus=20	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=212	key=1__1016058__-1__1__1016906__1__2____251__251__0__0	max_left=91	max_left_minus=89	max_left_plus=91	max_min_left=91	max_min_left_minus=89	max_min_left_plus=91	max_min_right=40	max_min_right_minus=40	max_min_right_plus=28	max_pos_hash_score=426	max_right=246	max_right_minus=226	max_right_plus=246	neg_log10_pos_hash_p_value=2.4	new_junction_coverage=0.40	new_junction_read_count=33	polymorphism_frequency=1.000e+00	pos_hash_score=23	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=2	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=212	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=31
JC	8048	.	1	1016978	-1	1	1017170	-1	0	alignment_overlap=9	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=7.222e-02	junction_possible_overlap_registers=205	key=1__1016978__-1__1__1017179__-1__9____251__251__0__0	max_left=64	max_left_minus=57	max_left_plus=64	max_min_left=64	max_min_left_minus=57	max_min_left_plus=64	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=412	max_right=185	max_right_minus=185	max_right_plus=138	neg_log10_pos_hash_p_value=7.7	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=7.222e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.26	side_1_overlap=9	side_1_possible_overlap_registers=214	side_1_read_count=22	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.69	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=56	side_2_redundant=0	total_non_overlap_reads=3
JC	8049	.	1	1031465	-1	1	1031477	1	0	alignment_overlap=0	coverage_minus=17	coverage_plus=15	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=214	key=1__1031465__-1__1__1031477__1__0____251__251__0__0	max_left=245	max_left_minus=245	max_left_plus=235	max_min_left=99	max_min_left_minus=78	max_min_left_plus=99	max_min_right=124	max_min_right_minus=94	max_min_right_plus=124	max_pos_hash_score=430	max_right=248	max_right_minus=248	max_right_plus=241	neg_log10_pos_hash_p_value=2.4	new_junction_coverage=0.38	new_junction_read_count=32	polymorphism_frequency=1.000e+00	pos_hash_score=23	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=32
JC	8050	.	1	1032750	-1	1	1032766	1	0	alignment_overlap=3	coverage_minus=31	coverage_plus=21	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=211	key=1__1032750__-1__1__1032763__1__3____251__251__0__0	max_left=225	max_left_minus=225	max_left_plus=172	max_min_left=123	max_min_left_minus=123	max_min_left_plus=119	max_min_right=116	max_min_right_minus=105	max_min_right_plus=116	max_pos_hash_score=424	max_right=245	max_right_minus=245	max_right_plus=238	neg_log10_pos_hash_p_value=0.9	new_junction_coverage=0.63	new_junction_read_count=52	polymorphism_frequency=1.000e+00	pos_hash_score=40	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=3	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=211	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=52
JC	8051	.	1	1054852	-1	1	1054863	1	0	alignment_overlap=1	coverage_minus=36	coverage_plus=28	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=213	key=1__1054852__-1__1__1054862__1__1____251__251__0__0	max_left=247	max_left_minus=229	max_left_plus=247	max_min_left=116	max_min_left_minus=116	max_min_left_plus=104	max_min_right=122	max_min_right_minus=114	max_min_right_plus=122	max_pos_hash_score=428	max_right=238	max_right_minus=235	max_right_plus=238	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.79	new_junction_read_count=66	polymorphism_frequency=1.000e+00	pos_hash_score=50	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=1	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=213	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=64
JC	8052	.	1	1057625	-1	1	1058225	-1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=4.025e-02	junction_possible_overlap_registers=204	key=1__1057625__-1__1__1058235__-1__10____251__251__0__0	max_left=226	max_left_minus=146	max_left_plus=226	max_min_left=92	max_min_left_minus=92	max_min_left_plus=0	max_min_right=94	max_min_right_minus=94	max_min_right_plus=14	max_pos_hash_score=410	max_right=148	max_right_minus=148	max_right_plus=14	neg_log10_pos_hash_p_value=7.7	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=4.025e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.75	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=63	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.03	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=83	side_2_redundant=0	total_non_overlap_reads=3
JC	8053	.	1	1059487	1	1	1059745	1	0	alignment_overlap=9	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=4.276e-02	junction_possible_overlap_registers=205	key=1__1059487__1__1__1059736__1__9____251__251__0__0	max_left=213	max_left_minus=47	max_left_plus=213	max_min_left=99	max_min_left_minus=47	max_min_left_plus=99	max_min_right=29	max_min_right_minus=0	max_min_right_plus=29	max_pos_hash_score=412	max_right=161	max_right_minus=161	max_right_plus=143	neg_log10_pos_hash_p_value=7.7	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=4.276e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.76	side_1_overlap=9	side_1_possible_overlap_registers=214	side_1_read_count=64	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.91	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=73	side_2_redundant=0	total_non_overlap_reads=3
JC	8054	.	1	1067549	1	2	102	1	0	alignment_overlap=0	coverage_minus=21	coverage_plus=28	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=214	key=1__1067549__1__2__102__1__0____251__251__1__0	max_left=213	max_left_minus=211	max_left_plus=213	max_min_left=38	max_min_left_minus=36	max_min_left_plus=38	max_min_right=112	max_min_right_minus=108	max_min_right_plus=112	max_pos_hash_score=430	max_right=247	max_right_minus=239	max_right_plus=247	neg_log10_pos_hash_p_value=1.5	new_junction_coverage=0.55	new_junction_read_count=53	polymorphism_frequency=1.000e+00	pos_hash_score=31	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=49
JC	8055	.	1	1067653	-1	3	20679	-1	-4	alignment_overlap=-4	coverage_minus=2	coverage_plus=5	flanking_left=251	flanking_right=251	frequency=8.151e-02	junction_possible_overlap_registers=210	key=1__1067653__-1__3__20679__-1__-4__ATTT__251__251__0__0	max_left=6	max_left_minus=4	max_left_plus=6	max_min_left=6	max_min_left_minus=4	max_min_left_plus=6	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=412	max_right=247	max_right_minus=246	max_right_plus=247	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.02	new_junction_read_count=2	polymorphism_frequency=8.151e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=5	side_1_coverage=0.47	side_1_overlap=0	side_1_possible_overlap_registers=209	side_1_read_count=39	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.06	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=6	side_2_redundant=0	total_non_overlap_reads=7	unique_read_sequence=ATTT
JC	8056	.	1	1069653	1	1	1070011	-1	0	alignment_overlap=2	coverage_minus=31	coverage_plus=11	flanking_left=251	flanking_right=251	frequency=5.667e-01	junction_possible_overlap_registers=212	key=1__1069653__1__1__1070013__-1__2____251__251__0__0	max_left=243	max_left_minus=243	max_left_plus=230	max_min_left=98	max_min_left_minus=98	max_min_left_plus=97	max_min_right=123	max_min_right_minus=122	max_min_right_plus=123	max_pos_hash_score=426	max_right=128	max_right_minus=128	max_right_plus=123	neg_log10_pos_hash_p_value=1.6	new_junction_coverage=0.61	new_junction_read_count=51	polymorphism_frequency=5.667e-01	pos_hash_score=30	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=2	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.94	side_2_overlap=0	side_2_possible_overlap_registers=212	side_2_read_count=78	side_2_redundant=0	total_non_overlap_reads=42
JC	8057	.	1	1125749	-1	1	1125750	1	-13	alignment_overlap=-13	coverage_minus=48	coverage_plus=26	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=201	key=1__1125749__-1__1__1125750__1__-13__ATTTGGTAACGCC__251__251__0__0	max_left=231	max_left_minus=228	max_left_plus=231	max_min_left=115	max_min_left_minus=110	max_min_left_plus=115	max_min_right=119	max_min_right_minus=111	max_min_right_plus=119	max_pos_hash_score=368	max_right=236	max_right_minus=236	max_right_plus=235	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.89	new_junction_read_count=70	polymorphism_frequency=1.000e+00	pos_hash_score=51	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=18	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=196	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=74	unique_read_sequence=ATTTGGTAACGCC
JC	8058	.	1	1134079	-1	1	1143716	1	-70	alignment_overlap=-70	coverage_minus=17	coverage_plus=28	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=144	key=1__1134079__-1__1__1143716__1__-70__CCGTAACGCGTCCCCTGATCCACCAACTGAATAATATTTTTAATGGATTGATGTTCATGTTGCGAACCGA__251__251__0__0	max_left=173	max_left_minus=161	max_left_plus=173	max_min_left=63	max_min_left_minus=55	max_min_left_plus=63	max_min_right=87	max_min_right_minus=69	max_min_right_plus=87	max_pos_hash_score=290	max_right=176	max_right_minus=172	max_right_plus=176	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.79	new_junction_read_count=45	polymorphism_frequency=9.710e-01	pos_hash_score=36	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.05	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=4	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=45	unique_read_sequence=CCGTAACGCGTCCCCTGATCCACCAACTGAATAATATTTTTAATGGATTGATGTTCATGTTGCGAACCGA
JC	8059	.	1	1136979	-1	1	1137293	1	0	alignment_overlap=2	coverage_minus=27	coverage_plus=33	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=212	key=1__1136979__-1__1__1137291__1__2____251__251__0__0	max_left=240	max_left_minus=240	max_left_plus=215	max_min_left=120	max_min_left_minus=118	max_min_left_plus=120	max_min_right=121	max_min_right_minus=116	max_min_right_plus=121	max_pos_hash_score=426	max_right=247	max_right_minus=247	max_right_plus=246	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.84	new_junction_read_count=70	polymorphism_frequency=1.000e+00	pos_hash_score=49	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=2	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=212	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=60
JC	8060	.	1	1137918	-1	1	1140374	1	-2	alignment_overlap=-2	coverage_minus=24	coverage_plus=25	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=212	key=1__1137918__-1__1__1140374__1__-2__AA__251__251__0__0	max_left=245	max_left_minus=245	max_left_plus=237	max_min_left=107	max_min_left_minus=75	max_min_left_plus=107	max_min_right=83	max_min_right_minus=65	max_min_right_plus=83	max_pos_hash_score=426	max_right=229	max_right_minus=209	max_right_plus=229	neg_log10_pos_hash_p_value=1.1	new_junction_coverage=0.67	new_junction_read_count=56	polymorphism_frequency=1.000e+00	pos_hash_score=37	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=49	unique_read_sequence=AA
JC	8061	.	1	1143892	-1	1	1143897	1	0	alignment_overlap=0	coverage_minus=31	coverage_plus=30	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=214	key=1__1143892__-1__1__1143897__1__0____251__251__0__0	max_left=177	max_left_minus=176	max_left_plus=177	max_min_left=122	max_min_left_minus=122	max_min_left_plus=102	max_min_right=125	max_min_right_minus=125	max_min_right_plus=123	max_pos_hash_score=430	max_right=248	max_right_minus=248	max_right_plus=243	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.82	new_junction_read_count=69	polymorphism_frequency=1.000e+00	pos_hash_score=46	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=61
JC	8062	.	1	1152758	-1	1	1153266	-1	0	alignment_overlap=10	coverage_minus=0	coverage_plus=5	flanking_left=251	flanking_right=251	frequency=6.695e-02	junction_possible_overlap_registers=204	key=1__1152758__-1__1__1153276__-1__10____251__251__0__0	max_left=168	max_left_minus=0	max_left_plus=168	max_min_left=106	max_min_left_minus=0	max_min_left_plus=106	max_min_right=73	max_min_right_minus=0	max_min_right_plus=73	max_pos_hash_score=410	max_right=135	max_right_minus=0	max_right_plus=135	neg_log10_pos_hash_p_value=7.7	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=6.695e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.93	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=78	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.81	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=65	side_2_redundant=0	total_non_overlap_reads=5
JC	8063	.	1	1183880	-1	1	1183884	1	0	alignment_overlap=2	coverage_minus=22	coverage_plus=24	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=212	key=1__1183880__-1__1__1183882__1__2____251__251__0__0	max_left=247	max_left_minus=244	max_left_plus=247	max_min_left=124	max_min_left_minus=104	max_min_left_plus=124	max_min_right=120	max_min_right_minus=120	max_min_right_plus=119	max_pos_hash_score=426	max_right=242	max_right_minus=201	max_right_plus=242	neg_log10_pos_hash_p_value=0.8	new_junction_coverage=0.55	new_junction_read_count=46	polymorphism_frequency=1.000e+00	pos_hash_score=41	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=2	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=212	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=46
JC	8064	.	1	1198857	-1	1	1198903	1	0	alignment_overlap=7	coverage_minus=27	coverage_plus=28	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=207	key=1__1198857__-1__1__1198896__1__7____251__251__0__0	max_left=239	max_left_minus=239	max_left_plus=226	max_min_left=121	max_min_left_minus=121	max_min_left_plus=89	max_min_right=116	max_min_right_minus=90	max_min_right_plus=116	max_pos_hash_score=416	max_right=234	max_right_minus=228	max_right_plus=234	neg_log10_pos_hash_p_value=1.1	new_junction_coverage=0.68	new_junction_read_count=55	polymorphism_frequency=1.000e+00	pos_hash_score=36	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=7	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=207	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=55
JC	8065	.	1	1202126	-1	1	1657336	1	-98	alignment_overlap=-98	coverage_minus=33	coverage_plus=26	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=116	key=1__1202126__-1__1__1657336__1__-98__CAACCGTGAAATAACTCTATGACCTACCCCTTAAAGGGGTCCACATATCCTTTCTTCGATAAATTATCCTGAATCATGTCTTCCTTTTCCTGATTCCT__251__251__0__1	max_left=147	max_left_minus=141	max_left_plus=147	max_min_left=69	max_min_left_minus=65	max_min_left_plus=69	max_min_right=74	max_min_right_minus=73	max_min_right_plus=74	max_pos_hash_score=234	max_right=148	max_right_minus=141	max_right_plus=148	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.29	new_junction_read_count=59	polymorphism_frequency=9.082e-01	pos_hash_score=42	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.13	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=11	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=59	unique_read_sequence=CAACCGTGAAATAACTCTATGACCTACCCCTTAAAGGGGTCCACATATCCTTTCTTCGATAAATTATCCTGAATCATGTCTTCCTTTTCCTGATTCCT
JC	8066	.	1	1202140	1	1	1648073	-1	-1	alignment_overlap=-1	coverage_minus=3	coverage_plus=6	flanking_left=251	flanking_right=251	frequency=2.441e-01	junction_possible_overlap_registers=213	key=1__1202140__1__1__1648073__-1__-1__C__251__251__0__0	max_left=233	max_left_minus=233	max_left_plus=233	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=29	max_min_right_minus=29	max_min_right_plus=29	max_pos_hash_score=428	max_right=29	max_right_minus=29	max_right_plus=29	neg_log10_pos_hash_p_value=6.4	new_junction_coverage=0.11	new_junction_read_count=9	polymorphism_frequency=2.441e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.02	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=2	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.64	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=54	side_2_redundant=0	total_non_overlap_reads=9	unique_read_sequence=C
JC	8067	.	1	1202140	1	1	1657570	-1	-1	alignment_overlap=-1	coverage_minus=25	coverage_plus=23	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=213	key=1__1202140__1__1__1657570__-1__-1__C__251__251__0__1	max_left=245	max_left_minus=233	max_left_plus=245	max_min_left=113	max_min_left_minus=113	max_min_left_plus=107	max_min_right=118	max_min_right_minus=118	max_min_right_plus=111	max_pos_hash_score=428	max_right=235	max_right_minus=235	max_right_plus=228	neg_log10_pos_hash_p_value=1.3	new_junction_coverage=0.57	new_junction_read_count=48	polymorphism_frequency=8.143e-01	pos_hash_score=34	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.13	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=11	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=48	unique_read_sequence=C
JC	8068	.	1	1202165	1	6	1	1	0	alignment_overlap=0	coverage_minus=62	coverage_plus=68	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=214	key=1__1202165__1__6__1__1__0____251__251__1__0	max_left=246	max_left_minus=246	max_left_plus=245	max_min_left=125	max_min_left_minus=125	max_min_left_plus=121	max_min_right=119	max_min_right_minus=119	max_min_right_plus=118	max_pos_hash_score=430	max_right=247	max_right_minus=247	max_right_plus=235	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.30	new_junction_read_count=130	polymorphism_frequency=1.000e+00	pos_hash_score=81	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=130
JC	8069	.	1	1202501	-1	1	1202502	1	-12	alignment_overlap=-12	coverage_minus=35	coverage_plus=49	flanking_left=251	flanking_right=251	frequency=NA	junction_possible_overlap_registers=202	key=1__1202501__-1__1__1202502__1__-12__TTCTCTTTCTCT__251__251__1__1	max_left=236	max_left_minus=231	max_left_plus=236	max_min_left=99	max_min_left_minus=82	max_min_left_plus=99	max_min_right=119	max_min_right_minus=101	max_min_right_plus=119	max_pos_hash_score=378	max_right=216	max_right_minus=216	max_right_plus=195	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.35	new_junction_read_count=107	polymorphism_frequency=NA	pos_hash_score=60	prediction=unknown	side_1_annotate_key=repeat	side_1_continuation=14	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=84	unique_read_sequence=TTCTCTTTCTCT
JC	8070	.	1	1207763	-1	2	176511	-1	-29	alignment_overlap=-29	coverage_minus=19	coverage_plus=14	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=185	key=1__1207763__-1__2__176511__-1__-29__TATTTACTAATTCTTTGCAAGAGTTTTTT__251__251__1__0	max_left=108	max_left_minus=108	max_left_plus=108	max_min_left=106	max_min_left_minus=106	max_min_left_plus=89	max_min_right=97	max_min_right_minus=97	max_min_right_plus=85	max_pos_hash_score=372	max_right=211	max_right_minus=198	max_right_plus=211	neg_log10_pos_hash_p_value=1.4	new_junction_coverage=0.40	new_junction_read_count=33	polymorphism_frequency=1.000e+00	pos_hash_score=28	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=33	unique_read_sequence=TATTTACTAATTCTTTGCAAGAGTTTTTT
JC	8071	.	1	1207795	-1	3	104543	-1	0	alignment_overlap=0	coverage_minus=33	coverage_plus=18	flanking_left=251	flanking_right=251	frequency=7.183e-01	junction_possible_overlap_registers=214	key=1__1207795__-1__3__104543__-1__0____251__251__0__0	max_left=140	max_left_minus=140	max_left_plus=140	max_min_left=121	max_min_left_minus=121	max_min_left_plus=112	max_min_right=119	max_min_right_minus=119	max_min_right_plus=60	max_pos_hash_score=430	max_right=229	max_right_minus=229	max_right_plus=213	neg_log10_pos_hash_p_value=1.2	new_junction_coverage=0.56	new_junction_read_count=51	polymorphism_frequency=7.183e-01	pos_hash_score=35	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.48	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=40	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=51
JC	8072	.	1	1211193	1	1	1211436	1	0	alignment_overlap=9	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.842e-02	junction_possible_overlap_registers=205	key=1__1211193__1__1__1211427__1__9____251__251__0__0	max_left=200	max_left_minus=127	max_left_plus=200	max_min_left=70	max_min_left_minus=0	max_min_left_plus=70	max_min_right=115	max_min_right_minus=115	max_min_right_plus=41	max_pos_hash_score=412	max_right=172	max_right_minus=115	max_right_plus=172	neg_log10_pos_hash_p_value=7.7	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.842e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.80	side_1_overlap=9	side_1_possible_overlap_registers=214	side_1_read_count=67	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.07	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=86	side_2_redundant=0	total_non_overlap_reads=3
JC	8073	.	1	1235468	-1	3	20679	-1	-4	alignment_overlap=-4	coverage_minus=2	coverage_plus=5	flanking_left=251	flanking_right=251	frequency=1.176e-01	junction_possible_overlap_registers=210	key=1__1235468__-1__3__20679__-1__-4__ATTT__251__251__0__0	max_left=6	max_left_minus=4	max_left_plus=6	max_min_left=6	max_min_left_minus=4	max_min_left_plus=6	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=412	max_right=247	max_right_minus=246	max_right_plus=247	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.02	new_junction_read_count=2	polymorphism_frequency=1.176e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=5	side_1_coverage=0.29	side_1_overlap=0	side_1_possible_overlap_registers=209	side_1_read_count=24	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.06	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=6	side_2_redundant=0	total_non_overlap_reads=7	unique_read_sequence=ATTT
JC	8074	.	1	1299093	1	1	1657605	-1	-36	alignment_overlap=-36	coverage_minus=5	coverage_plus=4	flanking_left=251	flanking_right=251	frequency=5.733e-01	junction_possible_overlap_registers=178	key=1__1299093__1__1__1657605__-1__-36__GCCTGATAGGGAGCCCTGATGTGAGAGCATCGGGGC__251__251__1__0	max_left=202	max_left_minus=202	max_left_plus=196	max_min_left=29	max_min_left_minus=29	max_min_left_plus=0	max_min_right=29	max_min_right_minus=22	max_min_right_plus=29	max_pos_hash_score=358	max_right=30	max_right_minus=30	max_right_plus=29	neg_log10_pos_hash_p_value=5.2	new_junction_coverage=0.27	new_junction_read_count=19	polymorphism_frequency=5.733e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.20	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=17	side_2_redundant=0	total_non_overlap_reads=9	unique_read_sequence=GCCTGATAGGGAGCCCTGATGTGAGAGCATCGGGGC
JC	8075	.	1	1307879	-1	3	20579	-1	-59	alignment_overlap=-59	coverage_minus=14	coverage_plus=10	flanking_left=251	flanking_right=251	frequency=5.357e-01	junction_possible_overlap_registers=155	key=1__1307879__-1__3__20579__-1__-59__AAAGCCTTTCGTGAAAGAGGACTTGATGGCGTAAAATCACCTTATACTAAACCTAAAAT__251__251__0__0	max_left=190	max_left_minus=167	max_left_plus=190	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=81	max_min_right_minus=81	max_min_right_plus=60	max_pos_hash_score=312	max_right=81	max_right_minus=81	max_right_plus=60	neg_log10_pos_hash_p_value=2.0	new_junction_coverage=0.43	new_junction_read_count=28	polymorphism_frequency=5.357e-01	pos_hash_score=18	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.69	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=67	side_2_redundant=0	total_non_overlap_reads=24	unique_read_sequence=AAAGCCTTTCGTGAAAGAGGACTTGATGGCGTAAAATCACCTTATACTAAACCTAAAAT
JC	8076	.	1	1308633	-1	1	1308634	1	-8	alignment_overlap=-8	coverage_minus=45	coverage_plus=53	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=206	key=1__1308633__-1__1__1308634__1__-8__AATTCATC__251__251__0__0	max_left=240	max_left_minus=240	max_left_plus=230	max_min_left=117	max_min_left_minus=115	max_min_left_plus=117	max_min_right=113	max_min_right_minus=106	max_min_right_plus=113	max_pos_hash_score=394	max_right=240	max_right_minus=236	max_right_plus=240	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.15	new_junction_read_count=93	polymorphism_frequency=1.000e+00	pos_hash_score=62	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=10	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=204	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=98	unique_read_sequence=AATTCATC
JC	8077	.	1	1310348	-1	2	73941	-1	-89	alignment_overlap=-89	coverage_minus=12	coverage_plus=11	flanking_left=251	flanking_right=251	frequency=2.714e-01	junction_possible_overlap_registers=124	key=1__1310348__-1__2__73941__-1__-89__TTTGAGTTTTTTCAAGGCTTGTGGTGAAAAGTCGGTTGTTTCAGTCACTTCAATCTGCATTTTTTTCATTTTGGGTATTTTAGGTTTAG__251__251__0__0	max_left=112	max_left_minus=88	max_left_plus=112	max_min_left=79	max_min_left_minus=71	max_min_left_plus=79	max_min_right=45	max_min_right_minus=42	max_min_right_plus=45	max_pos_hash_score=250	max_right=116	max_right_minus=116	max_right_plus=104	neg_log10_pos_hash_p_value=1.0	new_junction_coverage=0.45	new_junction_read_count=25	polymorphism_frequency=2.714e-01	pos_hash_score=21	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.09	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=92	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=1	side_2_coverage=1.28	side_2_overlap=0	side_2_possible_overlap_registers=213	side_2_read_count=139	side_2_redundant=0	total_non_overlap_reads=23	unique_read_sequence=TTTGAGTTTTTTCAAGGCTTGTGGTGAAAAGTCGGTTGTTTCAGTCACTTCAATCTGCATTTTTTTCATTTTGGGTATTTTAGGTTTAG
JC	8078	.	1	1310348	-1	3	20593	1	-76	alignment_overlap=-76	coverage_minus=4	coverage_plus=4	flanking_left=251	flanking_right=251	frequency=1.380e-01	junction_possible_overlap_registers=138	key=1__1310348__-1__3__20593__1__-76__TTTGAGTTTTTTCAAGGCTTGTGGTGAAAAGTCGGTTGTTTCAGTCACTTCAATCTGCATTTTTTTCATTTTGGGT__251__251__0__0	max_left=103	max_left_minus=97	max_left_plus=103	max_min_left=87	max_min_left_minus=58	max_min_left_plus=87	max_min_right=88	max_min_right_minus=80	max_min_right_plus=88	max_pos_hash_score=278	max_right=89	max_right_minus=88	max_right_plus=89	neg_log10_pos_hash_p_value=4.5	new_junction_coverage=0.14	new_junction_read_count=8	polymorphism_frequency=1.380e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.09	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=92	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.65	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=63	side_2_redundant=0	total_non_overlap_reads=8	unique_read_sequence=TTTGAGTTTTTTCAAGGCTTGTGGTGAAAAGTCGGTTGTTTCAGTCACTTCAATCTGCATTTTTTTCATTTTGGGT
JC	8079	.	1	1329107	-1	1	1329485	1	0	alignment_overlap=2	coverage_minus=30	coverage_plus=37	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=212	key=1__1329107__-1__1__1329483__1__2____251__251__0__0	max_left=247	max_left_minus=241	max_left_plus=247	max_min_left=119	max_min_left_minus=116	max_min_left_plus=119	max_min_right=124	max_min_right_minus=124	max_min_right_plus=124	max_pos_hash_score=426	max_right=244	max_right_minus=244	max_right_plus=203	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.80	new_junction_read_count=67	polymorphism_frequency=1.000e+00	pos_hash_score=55	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=2	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=212	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=67
JC	8080	.	1	1337567	-1	1	1341034	1	0	alignment_overlap=2	coverage_minus=55	coverage_plus=31	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=212	key=1__1337567__-1__1__1341032__1__2____251__251__0__0	max_left=246	max_left_minus=242	max_left_plus=246	max_min_left=112	max_min_left_minus=112	max_min_left_plus=98	max_min_right=115	max_min_right_minus=91	max_min_right_plus=115	max_pos_hash_score=426	max_right=246	max_right_minus=246	max_right_plus=243	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=1.04	new_junction_read_count=87	polymorphism_frequency=1.000e+00	pos_hash_score=56	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=2	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=212	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=86
JC	8081	.	1	1368881	-1	1	1368882	1	-9	alignment_overlap=-9	coverage_minus=48	coverage_plus=44	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=205	key=1__1368881__-1__1__1368882__1__-9__ACGAAGTAC__251__251__0__0	max_left=238	max_left_minus=226	max_left_plus=238	max_min_left=110	max_min_left_minus=110	max_min_left_plus=101	max_min_right=118	max_min_right_minus=118	max_min_right_plus=113	max_pos_hash_score=396	max_right=240	max_right_minus=230	max_right_plus=240	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.13	new_junction_read_count=91	polymorphism_frequency=1.000e+00	pos_hash_score=59	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=8	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=206	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=92	unique_read_sequence=ACGAAGTAC
JC	8082	.	1	1404357	-1	1	1406223	1	0	alignment_overlap=3	coverage_minus=45	coverage_plus=57	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=211	key=1__1404357__-1__1__1406220__1__3____251__251__0__0	max_left=246	max_left_minus=246	max_left_plus=231	max_min_left=121	max_min_left_minus=121	max_min_left_plus=117	max_min_right=123	max_min_right_minus=116	max_min_right_plus=123	max_pos_hash_score=424	max_right=226	max_right_minus=226	max_right_plus=226	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.23	new_junction_read_count=102	polymorphism_frequency=1.000e+00	pos_hash_score=65	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=3	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=211	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=102
JC	8083	.	1	1433138	1	1	1433229	1	0	alignment_overlap=9	coverage_minus=3	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=6.352e-02	junction_possible_overlap_registers=205	key=1__1433138__1__1__1433220__1__9____251__251__0__0	max_left=73	max_left_minus=73	max_left_plus=73	max_min_left=73	max_min_left_minus=73	max_min_left_plus=73	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=412	max_right=176	max_right_minus=169	max_right_plus=176	neg_log10_pos_hash_p_value=7.7	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=6.352e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.72	side_1_overlap=9	side_1_possible_overlap_registers=214	side_1_read_count=61	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.10	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=89	side_2_redundant=0	total_non_overlap_reads=5
JC	8084	.	1	1440338	-1	1	1440666	-1	0	alignment_overlap=11	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=3.549e-02	junction_possible_overlap_registers=203	key=1__1440338__-1__1__1440677__-1__11____251__251__0__0	max_left=111	max_left_minus=111	max_left_plus=36	max_min_left=111	max_min_left_minus=111	max_min_left_plus=36	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=408	max_right=204	max_right_minus=179	max_right_plus=204	neg_log10_pos_hash_p_value=7.7	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.549e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.92	side_1_overlap=11	side_1_possible_overlap_registers=214	side_1_read_count=77	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.13	side_2_overlap=0	side_2_possible_overlap_registers=203	side_2_read_count=90	side_2_redundant=0	total_non_overlap_reads=3
JC	8085	.	1	1446972	-1	1	1446973	1	-9	alignment_overlap=-9	coverage_minus=65	coverage_plus=39	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=205	key=1__1446972__-1__1__1446973__1__-9__TTTGTTCTC__251__251__0__0	max_left=237	max_left_minus=237	max_left_plus=196	max_min_left=117	max_min_left_minus=114	max_min_left_plus=117	max_min_right=118	max_min_right_minus=115	max_min_right_plus=118	max_pos_hash_score=394	max_right=239	max_right_minus=239	max_right_plus=239	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.25	new_junction_read_count=101	polymorphism_frequency=1.000e+00	pos_hash_score=67	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=9	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=205	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=104	unique_read_sequence=TTTGTTCTC
JC	8086	.	1	1463837	1	1	1463983	1	0	alignment_overlap=6	coverage_minus=4	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=4.464e-02	junction_possible_overlap_registers=208	key=1__1463837__1__1__1463977__1__6____251__251__0__0	max_left=136	max_left_minus=136	max_left_plus=136	max_min_left=57	max_min_left_minus=57	max_min_left_plus=0	max_min_right=109	max_min_right_minus=109	max_min_right_plus=74	max_pos_hash_score=418	max_right=197	max_right_minus=197	max_right_plus=74	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=4.464e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.26	side_1_overlap=6	side_1_possible_overlap_registers=214	side_1_read_count=106	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.36	side_2_overlap=0	side_2_possible_overlap_registers=208	side_2_read_count=111	side_2_redundant=0	total_non_overlap_reads=5
JC	8087	.	1	1476859	-1	1	1476879	1	-10	alignment_overlap=-10	coverage_minus=10	coverage_plus=25	flanking_left=251	flanking_right=251	frequency=6.405e-01	junction_possible_overlap_registers=204	key=1__1476859__-1__1__1476879__1__-10__ATATGGCTTT__251__251__0__0	max_left=96	max_left_minus=96	max_left_plus=76	max_min_left=96	max_min_left_minus=96	max_min_left_plus=76	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=400	max_right=240	max_right_minus=240	max_right_plus=216	neg_log10_pos_hash_p_value=1.7	new_junction_coverage=0.39	new_junction_read_count=31	polymorphism_frequency=6.405e-01	pos_hash_score=27	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=5	side_1_coverage=0.26	side_1_overlap=0	side_1_possible_overlap_registers=209	side_1_read_count=21	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.18	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=15	side_2_redundant=0	total_non_overlap_reads=35	unique_read_sequence=ATATGGCTTT
JC	8088	.	1	1479293	-1	1	1479294	1	-3	alignment_overlap=-3	coverage_minus=33	coverage_plus=16	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=211	key=1__1479293__-1__1__1479294__1__-3__AAT__251__251__0__0	max_left=225	max_left_minus=225	max_left_plus=150	max_min_left=111	max_min_left_minus=111	max_min_left_plus=105	max_min_right=101	max_min_right_minus=101	max_min_right_plus=101	max_pos_hash_score=408	max_right=247	max_right_minus=247	max_right_plus=243	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=0.60	new_junction_read_count=50	polymorphism_frequency=1.000e+00	pos_hash_score=41	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=8	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=206	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=49	unique_read_sequence=AAT
JC	8089	.	1	1521700	1	1	1522286	1	0	alignment_overlap=10	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=4.140e-02	junction_possible_overlap_registers=204	key=1__1521700__1__1__1522276__1__10____251__251__0__0	max_left=77	max_left_minus=77	max_left_plus=77	max_min_left=77	max_min_left_minus=77	max_min_left_plus=77	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=410	max_right=198	max_right_minus=140	max_right_plus=198	neg_log10_pos_hash_p_value=7.7	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=4.140e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.52	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=44	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.21	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=97	side_2_redundant=0	total_non_overlap_reads=3
JC	8090	.	1	1525705	-1	1	1525716	1	0	alignment_overlap=0	coverage_minus=36	coverage_plus=55	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=214	key=1__1525705__-1__1__1525716__1__0____251__251__0__0	max_left=246	max_left_minus=246	max_left_plus=245	max_min_left=125	max_min_left_minus=101	max_min_left_plus=125	max_min_right=122	max_min_right_minus=120	max_min_right_plus=122	max_pos_hash_score=430	max_right=248	max_right_minus=248	max_right_plus=239	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.08	new_junction_read_count=91	polymorphism_frequency=1.000e+00	pos_hash_score=58	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=91
JC	8091	.	1	1532981	-1	1	1533539	-1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=5.788e-02	junction_possible_overlap_registers=204	key=1__1532981__-1__1__1533549__-1__10____251__251__0__0	max_left=111	max_left_minus=104	max_left_plus=111	max_min_left=111	max_min_left_minus=104	max_min_left_plus=111	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=410	max_right=130	max_right_minus=105	max_right_plus=130	neg_log10_pos_hash_p_value=7.7	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=5.788e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.96	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=81	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.66	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=53	side_2_redundant=0	total_non_overlap_reads=4
JC	8092	.	1	1583770	1	1	1583869	1	0	alignment_overlap=8	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=3.999e-02	junction_possible_overlap_registers=206	key=1__1583770__1__1__1583861__1__8____251__251__0__0	max_left=77	max_left_minus=77	max_left_plus=24	max_min_left=77	max_min_left_minus=77	max_min_left_plus=24	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=414	max_right=166	max_right_minus=166	max_right_plus=109	neg_log10_pos_hash_p_value=7.7	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.999e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.94	side_1_overlap=8	side_1_possible_overlap_registers=214	side_1_read_count=79	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.84	side_2_overlap=0	side_2_possible_overlap_registers=206	side_2_read_count=68	side_2_redundant=0	total_non_overlap_reads=3
JC	8093	.	1	1604999	-1	1	1605322	-1	0	alignment_overlap=10	coverage_minus=3	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=6.044e-02	junction_possible_overlap_registers=204	key=1__1604999__-1__1__1605332__-1__10____251__251__0__0	max_left=213	max_left_minus=213	max_left_plus=64	max_min_left=72	max_min_left_minus=72	max_min_left_plus=64	max_min_right=32	max_min_right_minus=32	max_min_right_plus=0	max_pos_hash_score=410	max_right=195	max_right_minus=169	max_right_plus=195	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=6.044e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.39	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=117	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.93	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=75	side_2_redundant=0	total_non_overlap_reads=5
JC	8094	.	1	1620631	1	1	1620966	1	0	alignment_overlap=9	coverage_minus=2	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.552e-02	junction_possible_overlap_registers=205	key=1__1620631__1__1__1620957__1__9____251__251__0__0	max_left=183	max_left_minus=163	max_left_plus=183	max_min_left=111	max_min_left_minus=111	max_min_left_plus=106	max_min_right=79	max_min_right_minus=79	max_min_right_plus=58	max_pos_hash_score=412	max_right=136	max_right_minus=130	max_right_plus=136	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=3.552e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.34	side_1_overlap=9	side_1_possible_overlap_registers=214	side_1_read_count=113	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.35	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=109	side_2_redundant=0	total_non_overlap_reads=4
JC	8095	.	1	1623111	-1	1	1633644	-1	-12	alignment_overlap=-12	coverage_minus=2	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=5.257e-02	junction_possible_overlap_registers=196	key=1__1623111__-1__1__1633644__-1__-12__GGACACGGACAC__251__251__0__0	max_left=107	max_left_minus=107	max_left_plus=53	max_min_left=107	max_min_left_minus=107	max_min_left_plus=53	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=382	max_right=192	max_right_minus=177	max_right_plus=192	neg_log10_pos_hash_p_value=7.4	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=5.257e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=6	side_1_coverage=0.92	side_1_overlap=0	side_1_possible_overlap_registers=208	side_1_read_count=75	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=6	side_2_coverage=0.95	side_2_overlap=0	side_2_possible_overlap_registers=208	side_2_read_count=78	side_2_redundant=0	total_non_overlap_reads=4	unique_read_sequence=GGACACGGACAC
JC	8096	.	1	1623216	-1	3	20679	-1	-4	alignment_overlap=-4	coverage_minus=2	coverage_plus=5	flanking_left=251	flanking_right=251	frequency=3.264e-01	junction_possible_overlap_registers=210	key=1__1623216__-1__3__20679__-1__-4__ATTT__251__251__0__0	max_left=6	max_left_minus=4	max_left_plus=6	max_min_left=6	max_min_left_minus=4	max_min_left_plus=6	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=412	max_right=247	max_right_minus=246	max_right_plus=247	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.09	new_junction_read_count=8	polymorphism_frequency=3.264e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=5	side_1_coverage=0.33	side_1_overlap=0	side_1_possible_overlap_registers=209	side_1_read_count=27	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.06	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=6	side_2_redundant=0	total_non_overlap_reads=7	unique_read_sequence=ATTT
JC	8097	.	1	1633644	-1	2	102	1	-6	alignment_overlap=-6	coverage_minus=10	coverage_plus=13	flanking_left=251	flanking_right=251	frequency=4.030e-01	junction_possible_overlap_registers=208	key=1__1633644__-1__2__102__1__-6__GTGTCC__251__251__0__0	max_left=106	max_left_minus=102	max_left_plus=106	max_min_left=106	max_min_left_minus=102	max_min_left_plus=106	max_min_right=83	max_min_right_minus=83	max_min_right_plus=81	max_pos_hash_score=406	max_right=210	max_right_minus=210	max_right_plus=186	neg_log10_pos_hash_p_value=3.0	new_junction_coverage=0.29	new_junction_read_count=27	polymorphism_frequency=4.030e-01	pos_hash_score=18	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=6	side_1_coverage=0.98	side_1_overlap=0	side_1_possible_overlap_registers=208	side_1_read_count=80	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=23	unique_read_sequence=GTGTCC
JC	8098	.	1	1644099	1	1	1644439	1	0	alignment_overlap=9	coverage_minus=2	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=5.203e-02	junction_possible_overlap_registers=205	key=1__1644099__1__1__1644430__1__9____251__251__0__0	max_left=120	max_left_minus=120	max_left_plus=120	max_min_left=120	max_min_left_minus=120	max_min_left_plus=113	max_min_right=38	max_min_right_minus=0	max_min_right_plus=38	max_pos_hash_score=412	max_right=129	max_right_minus=122	max_right_plus=129	neg_log10_pos_hash_p_value=7.7	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=5.203e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.92	side_1_overlap=9	side_1_possible_overlap_registers=214	side_1_read_count=77	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.89	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=72	side_2_redundant=0	total_non_overlap_reads=4
JC	8099	.	1	1675989	-1	1	1676358	-1	0	alignment_overlap=4	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=2.431e-02	junction_possible_overlap_registers=210	key=1__1675989__-1__1__1676362__-1__4____251__251__0__0	max_left=88	max_left_minus=19	max_left_plus=88	max_min_left=88	max_min_left_minus=19	max_min_left_plus=88	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=422	max_right=228	max_right_minus=228	max_right_plus=194	neg_log10_pos_hash_p_value=7.8	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=2.431e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.37	side_1_overlap=4	side_1_possible_overlap_registers=214	side_1_read_count=115	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.55	side_2_overlap=0	side_2_possible_overlap_registers=210	side_2_read_count=128	side_2_redundant=0	total_non_overlap_reads=3
JC	8100	.	1	1696285	-1	12	486	-1	0	alignment_overlap=0	coverage_minus=55	coverage_plus=58	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=214	key=1__1696285__-1__12__486__-1__0____251__251__0__0	max_left=250	max_left_minus=250	max_left_plus=242	max_min_left=123	max_min_left_minus=123	max_min_left_plus=115	max_min_right=119	max_min_right_minus=119	max_min_right_plus=114	max_pos_hash_score=430	max_right=247	max_right_minus=241	max_right_plus=247	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.16	new_junction_read_count=119	polymorphism_frequency=1.000e+00	pos_hash_score=80	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=113
JC	8101	.	10	399	1	10	542	1	0	alignment_overlap=3	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=NA	junction_possible_overlap_registers=211	key=10__399__1__10__539__1__3____251__251__1__1	max_left=133	max_left_minus=133	max_left_plus=86	max_min_left=86	max_min_left_minus=86	max_min_left_plus=0	max_min_right=115	max_min_right_minus=115	max_min_right_plus=85	max_pos_hash_score=424	max_right=162	max_right_minus=162	max_right_plus=85	neg_log10_pos_hash_p_value=999999.0	new_junction_coverage=inf	new_junction_read_count=3	polymorphism_frequency=NA	pos_hash_score=3	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=3	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=3
JC	8102	.	10	1369	-1	16	1	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=6	flanking_left=251	flanking_right=105	frequency=NA	junction_possible_overlap_registers=214	key=10__1369__-1__16__1__1__0____251__105__1__1	max_left=216	max_left_minus=0	max_left_plus=216	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=103	max_min_right_minus=0	max_min_right_plus=103	max_pos_hash_score=430	max_right=103	max_right_minus=0	max_right_plus=103	neg_log10_pos_hash_p_value=999999.0	new_junction_coverage=inf	new_junction_read_count=8	polymorphism_frequency=NA	pos_hash_score=4	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=6
JC	8103	.	11	1	1	5	38025	-1	0	alignment_overlap=0	coverage_minus=60	coverage_plus=62	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=214	key=11__1__1__5__38025__-1__0____251__251__1__0	max_left=242	max_left_minus=242	max_left_plus=241	max_min_left=123	max_min_left_minus=122	max_min_left_plus=123	max_min_right=125	max_min_right_minus=116	max_min_right_plus=125	max_pos_hash_score=430	max_right=249	max_right_minus=234	max_right_plus=249	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=2.25	new_junction_read_count=123	polymorphism_frequency=1.000e+00	pos_hash_score=82	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=122
JC	8104	.	11	1225	-1	3	1	1	0	alignment_overlap=0	coverage_minus=16	coverage_plus=46	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=214	key=11__1225__-1__3__1__1__0____251__251__1__0	max_left=247	max_left_minus=247	max_left_plus=247	max_min_left=116	max_min_left_minus=103	max_min_left_plus=116	max_min_right=113	max_min_right_minus=108	max_min_right_plus=113	max_pos_hash_score=430	max_right=216	max_right_minus=208	max_right_plus=216	neg_log10_pos_hash_p_value=1.4	new_junction_coverage=1.27	new_junction_read_count=62	polymorphism_frequency=1.000e+00	pos_hash_score=41	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=62
JC	8105	.	12	1	1	4	1	1	0	alignment_overlap=0	coverage_minus=46	coverage_plus=65	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=214	key=12__1__1__4__1__1__0____251__251__0__0	max_left=250	max_left_minus=246	max_left_plus=250	max_min_left=124	max_min_left_minus=121	max_min_left_plus=124	max_min_right=123	max_min_right_minus=123	max_min_right_plus=116	max_pos_hash_score=430	max_right=246	max_right_minus=246	max_right_plus=244	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.04	new_junction_read_count=115	polymorphism_frequency=1.000e+00	pos_hash_score=76	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=111
JC	8106	.	12	486	-1	4	1	1	0	alignment_overlap=0	coverage_minus=7	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=214	key=12__486__-1__4__1__1__0____251__251__0__0	max_left=100	max_left_minus=100	max_left_plus=72	max_min_left=100	max_min_left_minus=100	max_min_left_plus=72	max_min_right=62	max_min_right_minus=62	max_min_right_plus=0	max_pos_hash_score=430	max_right=211	max_right_minus=176	max_right_plus=211	neg_log10_pos_hash_p_value=3.2	new_junction_coverage=0.08	new_junction_read_count=9	polymorphism_frequency=1.000e+00	pos_hash_score=4	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=9
JC	8107	.	15	1	1	9	1	1	0	alignment_overlap=0	coverage_minus=29	coverage_plus=27	flanking_left=136	flanking_right=251	frequency=1	junction_possible_overlap_registers=214	key=15__1__1__9__1__1__0____136__251__0__0	max_left=136	max_left_minus=134	max_left_plus=136	max_min_left=119	max_min_left_minus=119	max_min_left_plus=110	max_min_right=124	max_min_right_minus=124	max_min_right_plus=103	max_pos_hash_score=430	max_right=247	max_right_minus=247	max_right_plus=234	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=0.65	new_junction_read_count=61	polymorphism_frequency=1.000e+00	pos_hash_score=41	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=56
JC	8108	.	15	136	-1	4	47298	-1	-1	alignment_overlap=-1	coverage_minus=27	coverage_plus=26	flanking_left=136	flanking_right=251	frequency=1	junction_possible_overlap_registers=213	key=15__136__-1__4__47298__-1__-1__T__136__251__0__0	max_left=136	max_left_minus=136	max_left_plus=136	max_min_left=122	max_min_left_minus=100	max_min_left_plus=122	max_min_right=121	max_min_right_minus=121	max_min_right_plus=118	max_pos_hash_score=428	max_right=239	max_right_minus=239	max_right_plus=209	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=0.75	new_junction_read_count=68	polymorphism_frequency=1.000e+00	pos_hash_score=39	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=53	unique_read_sequence=T
JC	8109	.	2	7026	1	2	7833	1	0	alignment_overlap=10	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.242e-02	junction_possible_overlap_registers=204	key=2__7026__1__2__7823__1__10____251__251__0__0	max_left=146	max_left_minus=142	max_left_plus=146	max_min_left=103	max_min_left_minus=0	max_min_left_plus=103	max_min_right=70	max_min_right_minus=70	max_min_right_plus=70	max_pos_hash_score=410	max_right=138	max_right_minus=70	max_right_plus=138	neg_log10_pos_hash_p_value=10.0	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=3.242e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.96	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=105	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.76	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=79	side_2_redundant=0	total_non_overlap_reads=3
JC	8110	.	2	41961	-1	2	42079	-1	0	alignment_overlap=5	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=2.128e-02	junction_possible_overlap_registers=209	key=2__41961__-1__2__42084__-1__5____251__251__0__0	max_left=173	max_left_minus=173	max_left_plus=129	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=117	max_min_right_minus=73	max_min_right_plus=117	max_pos_hash_score=420	max_right=117	max_right_minus=73	max_right_plus=117	neg_log10_pos_hash_p_value=10.1	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.128e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.18	side_1_overlap=5	side_1_possible_overlap_registers=214	side_1_read_count=129	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.41	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=150	side_2_redundant=0	total_non_overlap_reads=3
JC	8111	.	2	47968	-1	2	47969	1	-5	alignment_overlap=-5	coverage_minus=42	coverage_plus=59	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=209	key=2__47968__-1__2__47969__1__-5__AATAA__251__251__0__0	max_left=241	max_left_minus=241	max_left_plus=239	max_min_left=120	max_min_left_minus=120	max_min_left_plus=105	max_min_right=120	max_min_right_minus=106	max_min_right_plus=120	max_pos_hash_score=404	max_right=245	max_right_minus=245	max_right_plus=238	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=0.94	new_junction_read_count=100	polymorphism_frequency=1.000e+00	pos_hash_score=69	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=8	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=206	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=101	unique_read_sequence=AATAA
JC	8112	.	2	84960	-1	2	84965	1	0	alignment_overlap=0	coverage_minus=91	coverage_plus=74	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=214	key=2__84960__-1__2__84965__1__0____251__251__0__0	max_left=249	max_left_minus=240	max_left_plus=249	max_min_left=122	max_min_left_minus=122	max_min_left_plus=122	max_min_right=125	max_min_right_minus=119	max_min_right_plus=125	max_pos_hash_score=430	max_right=250	max_right_minus=247	max_right_plus=250	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.52	new_junction_read_count=166	polymorphism_frequency=1.000e+00	pos_hash_score=86	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=165
JC	8113	.	2	95103	1	2	95331	1	0	alignment_overlap=9	coverage_minus=1	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=NA	junction_possible_overlap_registers=205	key=2__95103__1__2__95322__1__9____251__251__1__1	max_left=191	max_left_minus=191	max_left_plus=131	max_min_left=117	max_min_left_minus=0	max_min_left_plus=117	max_min_right=112	max_min_right_minus=51	max_min_right_plus=112	max_pos_hash_score=412	max_right=138	max_right_minus=51	max_right_plus=138	neg_log10_pos_hash_p_value=9.4	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=NA	pos_hash_score=4	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=9	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=4
JC	8114	.	2	105348	1	2	105629	1	0	alignment_overlap=8	coverage_minus=3	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=2.646e-02	junction_possible_overlap_registers=206	key=2__105348__1__2__105621__1__8____251__251__0__0	max_left=82	max_left_minus=82	max_left_plus=46	max_min_left=82	max_min_left_minus=82	max_min_left_plus=46	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=414	max_right=196	max_right_minus=195	max_right_plus=196	neg_log10_pos_hash_p_value=10.0	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=2.646e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.40	side_1_overlap=8	side_1_possible_overlap_registers=214	side_1_read_count=152	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.41	side_2_overlap=0	side_2_possible_overlap_registers=206	side_2_read_count=148	side_2_redundant=0	total_non_overlap_reads=4
JC	8115	.	2	154908	-1	3	20679	-1	-4	alignment_overlap=-4	coverage_minus=17	coverage_plus=8	flanking_left=251	flanking_right=251	frequency=3.101e-01	junction_possible_overlap_registers=210	key=2__154908__-1__3__20679__-1__-4__ATTT__251__251__0__0	max_left=32	max_left_minus=32	max_left_plus=22	max_min_left=32	max_min_left_minus=32	max_min_left_plus=22	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=412	max_right=247	max_right_minus=246	max_right_plus=247	neg_log10_pos_hash_p_value=6.3	new_junction_coverage=0.23	new_junction_read_count=23	polymorphism_frequency=3.101e-01	pos_hash_score=11	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=5	side_1_coverage=0.90	side_1_overlap=0	side_1_possible_overlap_registers=209	side_1_read_count=96	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.06	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=6	side_2_redundant=0	total_non_overlap_reads=25	unique_read_sequence=ATTT
JC	8116	.	2	155101	-1	2	164186	1	0	alignment_overlap=2	coverage_minus=53	coverage_plus=20	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=212	key=2__155101__-1__2__164184__1__2____251__251__0__0	max_left=244	max_left_minus=244	max_left_plus=196	max_min_left=122	max_min_left_minus=120	max_min_left_plus=122	max_min_right=115	max_min_right_minus=115	max_min_right_plus=115	max_pos_hash_score=426	max_right=236	max_right_minus=227	max_right_plus=236	neg_log10_pos_hash_p_value=0.8	new_junction_coverage=0.71	new_junction_read_count=77	polymorphism_frequency=1.000e+00	pos_hash_score=50	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=2	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=212	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=73
JC	8117	.	2	165143	-1	2	166753	1	0	alignment_overlap=5	coverage_minus=67	coverage_plus=60	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=209	key=2__165143__-1__2__166748__1__5____251__251__0__0	max_left=243	max_left_minus=243	max_left_plus=227	max_min_left=119	max_min_left_minus=110	max_min_left_plus=119	max_min_right=113	max_min_right_minus=113	max_min_right_plus=91	max_pos_hash_score=420	max_right=241	max_right_minus=241	max_right_plus=232	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.19	new_junction_read_count=127	polymorphism_frequency=1.000e+00	pos_hash_score=80	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=5	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=127
JC	8118	.	2	170264	-1	2	170310	1	-81	alignment_overlap=-81	coverage_minus=28	coverage_plus=40	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=133	key=2__170264__-1__2__170310__1__-81__TGAATCAACCGGTTGCTTCTTTTTCCGGCGGCGAAAAAGCGCGTCTGGTGCTGGCGCTCATCGTGTGGCAACGCCCGAATT__251__251__0__0	max_left=169	max_left_minus=169	max_left_plus=142	max_min_left=83	max_min_left_minus=77	max_min_left_plus=83	max_min_right=81	max_min_right_minus=70	max_min_right_plus=81	max_pos_hash_score=268	max_right=159	max_right_minus=159	max_right_plus=158	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.02	new_junction_read_count=69	polymorphism_frequency=1.000e+00	pos_hash_score=55	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=68	unique_read_sequence=TGAATCAACCGGTTGCTTCTTTTTCCGGCGGCGAAAAAGCGCGTCTGGTGCTGGCGCTCATCGTGTGGCAACGCCCGAATT
JC	8119	.	3	6108	-1	3	6428	-1	0	alignment_overlap=12	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.150e-02	junction_possible_overlap_registers=202	key=3__6108__-1__3__6440__-1__12____251__251__0__0	max_left=154	max_left_minus=154	max_left_plus=101	max_min_left=92	max_min_left_minus=0	max_min_left_plus=92	max_min_right=85	max_min_right_minus=85	max_min_right_plus=65	max_pos_hash_score=406	max_right=147	max_right_minus=85	max_right_plus=147	neg_log10_pos_hash_p_value=10.0	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=3.150e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.01	side_1_overlap=12	side_1_possible_overlap_registers=214	side_1_read_count=98	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.00	side_2_overlap=0	side_2_possible_overlap_registers=202	side_2_read_count=92	side_2_redundant=0	total_non_overlap_reads=3
JC	8120	.	3	76583	1	3	79624	1	0	alignment_overlap=2	coverage_minus=41	coverage_plus=40	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=212	key=3__76583__1__3__79622__1__2____251__251__0__0	max_left=248	max_left_minus=244	max_left_plus=248	max_min_left=116	max_min_left_minus=116	max_min_left_plus=116	max_min_right=120	max_min_right_minus=119	max_min_right_plus=120	max_pos_hash_score=426	max_right=237	max_right_minus=188	max_right_plus=237	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.84	new_junction_read_count=81	polymorphism_frequency=1.000e+00	pos_hash_score=54	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=2	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=212	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=81
JC	8121	.	3	76584	-1	3	79621	-1	0	alignment_overlap=2	coverage_minus=41	coverage_plus=43	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=212	key=3__76584__-1__3__79623__-1__2____251__251__0__0	max_left=237	max_left_minus=237	max_left_plus=233	max_min_left=121	max_min_left_minus=88	max_min_left_plus=121	max_min_right=122	max_min_right_minus=122	max_min_right_plus=115	max_pos_hash_score=426	max_right=235	max_right_minus=235	max_right_plus=231	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.87	new_junction_read_count=84	polymorphism_frequency=1.000e+00	pos_hash_score=58	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=2	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=212	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=84
JC	8122	.	3	79032	-1	3	79052	1	0	alignment_overlap=0	coverage_minus=44	coverage_plus=40	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=214	key=3__79032__-1__3__79052__1__0____251__251__0__0	max_left=237	max_left_minus=237	max_left_plus=234	max_min_left=106	max_min_left_minus=106	max_min_left_plus=105	max_min_right=122	max_min_right_minus=122	max_min_right_plus=98	max_pos_hash_score=430	max_right=243	max_right_minus=243	max_right_plus=238	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.87	new_junction_read_count=85	polymorphism_frequency=1.000e+00	pos_hash_score=59	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=84
JC	8123	.	3	85365	1	3	85748	1	-22	alignment_overlap=-22	coverage_minus=0	coverage_plus=8	flanking_left=251	flanking_right=251	frequency=3.247e-01	junction_possible_overlap_registers=192	key=3__85365__1__3__85748__1__-22__TATTCGTGTAGTTGGTTGTTTA__251__251__0__0	max_left=163	max_left_minus=0	max_left_plus=163	max_min_left=3	max_min_left_minus=0	max_min_left_plus=3	max_min_right=65	max_min_right_minus=0	max_min_right_plus=65	max_pos_hash_score=386	max_right=227	max_right_minus=0	max_right_plus=227	neg_log10_pos_hash_p_value=7.0	new_junction_coverage=0.25	new_junction_read_count=22	polymorphism_frequency=3.247e-01	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.05	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=102	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=8	unique_read_sequence=TATTCGTGTAGTTGGTTGTTTA
JC	8124	.	3	92736	-1	3	92881	-1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=7.559e-02	junction_possible_overlap_registers=204	key=3__92736__-1__3__92891__-1__10____251__251__0__0	max_left=117	max_left_minus=117	max_left_plus=117	max_min_left=75	max_min_left_minus=45	max_min_left_plus=75	max_min_right=97	max_min_right_minus=97	max_min_right_plus=97	max_pos_hash_score=410	max_right=97	max_right_minus=97	max_right_plus=97	neg_log10_pos_hash_p_value=9.4	new_junction_coverage=0.05	new_junction_read_count=5	polymorphism_frequency=7.559e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.60	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=58	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.72	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=67	side_2_redundant=0	total_non_overlap_reads=5
JC	8125	.	3	94974	-1	3	94975	1	-3	alignment_overlap=-3	coverage_minus=34	coverage_plus=33	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=211	key=3__94974__-1__3__94975__1__-3__ATT__251__251__0__0	max_left=228	max_left_minus=216	max_left_plus=228	max_min_left=123	max_min_left_minus=123	max_min_left_plus=108	max_min_right=114	max_min_right_minus=114	max_min_right_plus=111	max_pos_hash_score=418	max_right=245	max_right_minus=214	max_right_plus=245	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=0.68	new_junction_read_count=65	polymorphism_frequency=1.000e+00	pos_hash_score=52	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=3	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=211	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=67	unique_read_sequence=ATT
JC	8126	.	3	97282	-1	3	97346	1	0	alignment_overlap=0	coverage_minus=36	coverage_plus=24	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=214	key=3__97282__-1__3__97346__1__0____251__251__0__0	max_left=229	max_left_minus=229	max_left_plus=226	max_min_left=116	max_min_left_minus=116	max_min_left_plus=97	max_min_right=120	max_min_right_minus=100	max_min_right_plus=120	max_pos_hash_score=430	max_right=233	max_right_minus=230	max_right_plus=233	neg_log10_pos_hash_p_value=1.0	new_junction_coverage=0.62	new_junction_read_count=60	polymorphism_frequency=1.000e+00	pos_hash_score=47	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=60
JC	8127	.	4	25235	-1	4	25239	1	0	alignment_overlap=4	coverage_minus=48	coverage_plus=31	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=210	key=4__25235__-1__4__25235__1__4____251__251__0__0	max_left=245	max_left_minus=232	max_left_plus=245	max_min_left=123	max_min_left_minus=123	max_min_left_plus=122	max_min_right=122	max_min_right_minus=122	max_min_right_plus=119	max_pos_hash_score=422	max_right=245	max_right_minus=245	max_right_plus=243	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.84	new_junction_read_count=82	polymorphism_frequency=1.000e+00	pos_hash_score=55	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=4	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=210	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=79
JC	8128	.	4	29956	-1	4	30058	-1	0	alignment_overlap=7	coverage_minus=1	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=3.924e-02	junction_possible_overlap_registers=207	key=4__29956__-1__4__30065__-1__7____251__251__0__0	max_left=166	max_left_minus=166	max_left_plus=155	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=103	max_min_right_minus=77	max_min_right_plus=103	max_pos_hash_score=416	max_right=103	max_right_minus=77	max_right_plus=103	neg_log10_pos_hash_p_value=11.9	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=3.924e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.95	side_1_overlap=7	side_1_possible_overlap_registers=214	side_1_read_count=95	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.08	side_2_overlap=0	side_2_possible_overlap_registers=207	side_2_read_count=104	side_2_redundant=0	total_non_overlap_reads=4
JC	8129	.	5	2582	-1	5	3912	1	0	alignment_overlap=2	coverage_minus=79	coverage_plus=68	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=212	key=5__2582__-1__5__3910__1__2____251__251__0__0	max_left=244	max_left_minus=240	max_left_plus=244	max_min_left=122	max_min_left_minus=118	max_min_left_plus=122	max_min_right=121	max_min_right_minus=96	max_min_right_plus=121	max_pos_hash_score=426	max_right=246	max_right_minus=246	max_right_plus=239	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.37	new_junction_read_count=148	polymorphism_frequency=1.000e+00	pos_hash_score=89	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=2	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=212	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=147
JC	8130	.	5	14590	-1	5	15120	-1	0	alignment_overlap=13	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=2.928e-02	junction_possible_overlap_registers=201	key=5__14590__-1__5__15133__-1__13____251__251__0__0	max_left=178	max_left_minus=178	max_left_plus=157	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=81	max_min_right_minus=43	max_min_right_plus=81	max_pos_hash_score=404	max_right=81	max_right_minus=43	max_right_plus=81	neg_log10_pos_hash_p_value=11.7	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.928e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.22	side_1_overlap=13	side_1_possible_overlap_registers=214	side_1_read_count=133	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.72	side_2_overlap=0	side_2_possible_overlap_registers=201	side_2_read_count=74	side_2_redundant=0	total_non_overlap_reads=3
JC	8131	.	5	23049	-1	5	23443	1	0	alignment_overlap=2	coverage_minus=51	coverage_plus=68	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=212	key=5__23049__-1__5__23441__1__2____251__251__0__0	max_left=248	max_left_minus=248	max_left_plus=243	max_min_left=112	max_min_left_minus=90	max_min_left_plus=112	max_min_right=123	max_min_right_minus=110	max_min_right_plus=123	max_pos_hash_score=426	max_right=247	max_right_minus=247	max_right_plus=244	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.11	new_junction_read_count=120	polymorphism_frequency=1.000e+00	pos_hash_score=78	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=2	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=212	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=119
JC	8132	.	5	33783	1	5	33779	-1	0	alignment_overlap=6	coverage_minus=36	coverage_plus=56	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=208	key=5__33783__1__5__33785__-1__6____251__251__0__0	max_left=240	max_left_minus=230	max_left_plus=240	max_min_left=122	max_min_left_minus=98	max_min_left_plus=122	max_min_right=122	max_min_right_minus=117	max_min_right_plus=122	max_pos_hash_score=418	max_right=239	max_right_minus=235	max_right_plus=239	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.88	new_junction_read_count=93	polymorphism_frequency=9.895e-01	pos_hash_score=57	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.01	side_1_overlap=6	side_1_possible_overlap_registers=214	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.01	side_2_overlap=0	side_2_possible_overlap_registers=208	side_2_read_count=1	side_2_redundant=0	total_non_overlap_reads=92
JC	8133	.	6	2193	1	6	2578	1	0	alignment_overlap=7	coverage_minus=2	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.745e-02	junction_possible_overlap_registers=207	key=6__2193__1__6__2571__1__7____251__251__0__0	max_left=242	max_left_minus=242	max_left_plus=152	max_min_left=64	max_min_left_minus=0	max_min_left_plus=64	max_min_right=55	max_min_right_minus=3	max_min_right_plus=55	max_pos_hash_score=416	max_right=179	max_right_minus=3	max_right_plus=179	neg_log10_pos_hash_p_value=12.2	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=3.745e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.89	side_1_overlap=7	side_1_possible_overlap_registers=214	side_1_read_count=103	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.94	side_2_overlap=0	side_2_possible_overlap_registers=207	side_2_read_count=106	side_2_redundant=0	total_non_overlap_reads=4
JC	8134	.	7	1826	1	7	1839	-1	-10	alignment_overlap=-10	coverage_minus=123	coverage_plus=167	flanking_left=251	flanking_right=251	frequency=NA	junction_possible_overlap_registers=204	key=7__1826__1__7__1839__-1__-10__CTCTTTCTCT__251__251__1__1	max_left=236	max_left_minus=233	max_left_plus=236	max_min_left=114	max_min_left_minus=114	max_min_left_plus=114	max_min_right=119	max_min_right_minus=110	max_min_right_plus=119	max_pos_hash_score=410	max_right=235	max_right_minus=235	max_right_plus=233	neg_log10_pos_hash_p_value=999999.0	new_junction_coverage=inf	new_junction_read_count=296	polymorphism_frequency=NA	pos_hash_score=117	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=290	unique_read_sequence=CTCTTTCTCT
UN	8135	.	1	1	484
UN	8136	.	1	15759	16146
UN	8137	.	1	31357	32877
UN	8138	.	1	59297	59302
UN	8139	.	1	118608	118624
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UN	8141	.	1	153865	155324
UN	8142	.	1	155724	155744
UN	8143	.	1	212195	212196
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UN	8145	.	1	212218	212219
UN	8146	.	1	212246	212250
UN	8147	.	1	224288	224292
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UN	8149	.	1	224296	224299
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UN	8151	.	1	225154	225163
UN	8152	.	1	225165	225167
UN	8153	.	1	225199	225199
UN	8154	.	1	225206	225207
UN	8155	.	1	225220	225221
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UN	8160	.	1	225235	225235
UN	8161	.	1	225237	225237
UN	8162	.	1	259834	259837
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UN	8165	.	1	288579	288582
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UN	8168	.	1	310779	310784
UN	8169	.	1	347503	349132
UN	8170	.	1	358237	358237
UN	8171	.	1	358239	358252
UN	8172	.	1	475334	476175
UN	8173	.	1	499073	499102
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UN	8175	.	1	501303	501303
UN	8176	.	1	501305	501663
UN	8177	.	1	502532	502532
UN	8178	.	1	502536	502537
UN	8179	.	1	502539	502576
UN	8180	.	1	503082	503089
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UN	8182	.	1	503338	503338
UN	8183	.	1	503350	503350
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UN	8185	.	1	503356	503356
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UN	8189	.	1	504167	504167
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UN	8193	.	1	504184	504184
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UN	8195	.	1	504262	504262
UN	8196	.	1	504271	504272
UN	8197	.	1	504440	504440
UN	8198	.	1	504442	504443
UN	8199	.	1	504448	504449
UN	8200	.	1	504451	504451
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UN	8205	.	1	504598	504598
UN	8206	.	1	504609	504695
UN	8207	.	1	504702	504709
UN	8208	.	1	504712	504715
UN	8209	.	1	504981	504982
UN	8210	.	1	504984	504988
UN	8211	.	1	504991	504991
UN	8212	.	1	518632	518646
UN	8213	.	1	566088	569020
UN	8214	.	1	605674	605771
UN	8215	.	1	606181	606181
UN	8216	.	1	606184	606217
UN	8217	.	1	606221	606233
UN	8218	.	1	649416	649424
UN	8219	.	1	649429	649429
UN	8220	.	1	649441	649442
UN	8221	.	1	649448	649450
UN	8222	.	1	649455	649455
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UN	8224	.	1	649461	649468
UN	8225	.	1	670150	671520
UN	8226	.	1	672297	675531
UN	8227	.	1	697432	697478
UN	8228	.	1	853874	853882
UN	8229	.	1	856294	857863
UN	8230	.	1	877811	877878
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UN	8236	.	1	1009754	1009908
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UN	8239	.	1	1015957	1015978
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UN	8241	.	1	1030319	1030322
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UN	8244	.	1	1030397	1030764
UN	8245	.	1	1030769	1030769
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UN	8250	.	1	1054853	1054862
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UN	8292	.	1	1525706	1525715
UN	8293	.	1	1559440	1566111
UN	8294	.	1	1623299	1623299
UN	8295	.	1	1623301	1624120
UN	8296	.	1	1632929	1633163
UN	8297	.	1	1634765	1634770
UN	8298	.	1	1635133	1640344
UN	8299	.	1	1647586	1647926
UN	8300	.	1	1657097	1657570
UN	8301	.	2	1	101
UN	8302	.	2	84961	84964
UN	8303	.	2	94762	95427
UN	8304	.	2	155102	164185
UN	8305	.	2	165144	166752
UN	8306	.	2	170265	170309
UN	8307	.	3	20671	20775
UN	8308	.	3	47515	47515
UN	8309	.	3	47525	47525
UN	8310	.	3	47530	47531
UN	8311	.	3	75883	75887
UN	8312	.	3	79033	79051
UN	8313	.	3	79622	79623
UN	8314	.	3	85747	85748
UN	8315	.	3	97283	97345
UN	8316	.	4	25236	25238
UN	8317	.	4	47299	47299
UN	8318	.	5	1	33
UN	8319	.	5	2583	3911
UN	8320	.	5	23050	23442
UN	8321	.	5	33780	33782
UN	8322	.	9	994	1416