#=GENOME_DIFF	1.0
#=CREATED	14:51:23 20 Jan 2022
#=PROGRAM	breseq 0.35.4 
#=COMMAND	breseq -j 6 -r /data/p127804/PROJECTS/JanMaarten/Yanyan_202201_SNP/genomes/Aa31S.gbk /data/p127804/PROJECTS/JanMaarten/Yanyan_202201_SNP/fastq/ATCC_S10_L001_R1_001.fastq.gz -o /data/p127804/PROJECTS/JanMaarten/Yanyan_202201_SNP/breseq_results/ATCC_vs_gbk31S
#=REFSEQ	/data/p127804/PROJECTS/JanMaarten/Yanyan_202201_SNP/genomes/Aa31S.gbk
#=READSEQ	/data/p127804/PROJECTS/JanMaarten/Yanyan_202201_SNP/fastq/ATCC_S10_L001_R1_001.fastq.gz
#=CONVERTED-BASES	194754060
#=CONVERTED-READS	902159
#=INPUT-BASES	194778000
#=INPUT-READS	902843
#=MAPPED-BASES	179681558
#=MAPPED-READS	834052
SNP	1	2389	1	306	C
SNP	2	2390	1	329	A
SNP	3	2391	1	346	A
SNP	4	2392	1	349	G
SNP	5	2393	1	369	A
SNP	6	2394	1	394	T
SNP	7	2395	1	618	G
SNP	8	2396	1	808	G
SNP	9	2397	1	2761	T
SNP	10	2398	1	5932	A
SNP	11	2399	1	6721	T
SNP	12	2400	1	7047	T
SNP	13	2402	1	8912	T
SNP	14	2403	1	9086	A
SNP	15	2404	1	9796	T
SNP	16	2405	1	10057	G
SNP	17	2406	1	11010	A
SNP	18	2407	1	11252	A
SNP	19	2411	1	11447	G
SNP	20	2412	1	13843	G
SNP	21	2413	1	15362	C
SNP	22	2414	1	15998	A
SNP	23	2415	1	16196	G
SNP	24	2416	1	18811	G
SNP	25	2417	1	19569	G
SNP	26	2418	1	20994	T
SNP	27	2419	1	23097	A
SNP	28	2423	1	25808	T
SNP	29	2424	1	26071	A
SNP	30	2425	1	26748	A
SNP	31	2426	1	27596	C
SNP	32	2427	1	28111	T
SNP	33	2428	1	28386	T
SNP	34	2429	1	28545	G
SNP	35	2430	1	29188	A
SNP	36	2433	1	33593	G
SNP	37	2434	1	34163	A
SNP	38	2435	1	35284	T
SNP	39	2436	1	36862	C
SNP	40	2437	1	37905	T
SNP	41	2438	1	38237	T
SNP	42	2439	1	38869	A
SNP	43	2440	1	42195	G
SNP	44	2441	1	42339	A
SNP	45	2442	1	42704	A
SNP	46	2443	1	43942	G
SNP	47	2444	1	47763	T
SNP	48	2445	1	48431	T
SNP	49	2446	1	50600	T
SNP	50	2447	1	55276	C
SNP	51	2448	1	57971	A
SNP	52	2449	1	59705	A
SNP	53	2450	1	60125	G
SNP	54	2451	1	60533	T
SNP	55	2452	1	60615	G
SNP	56	2453	1	60922	C
SNP	57	2454	1	60945	G
SNP	58	2455	1	62914	C
SNP	59	2456	1	63062	G
SNP	60	2457	1	63992	C
SNP	61	2458	1	64985	T
SNP	62	2459	1	67593	C
SNP	63	2460	1	68395	G
SNP	64	2461	1	76526	G
SNP	65	2462	1	78305	A
SNP	66	2463	1	80194	C
SNP	67	2464	1	80622	C
SNP	68	2465	1	80767	A
SNP	69	2466	1	81544	A
SNP	70	2467	1	82384	A
SNP	71	2468	1	82774	C
SNP	72	2469	1	83376	C
SNP	73	2470	1	84041	C
SNP	74	2472	1	86064	A
SNP	75	2473	1	86691	G
SNP	76	2474	1	88947	G
SNP	77	2475	1	92721	G
SNP	78	2476	1	95833	T
SNP	79	2480	1	98107	A
SUB	80	2481,2482	1	98112	2	AC
SNP	81	2483	1	98297	C
SNP	82	2484	1	98327	G
SNP	83	2485	1	98333	C
SNP	84	2486	1	98359	T
SNP	85	2488	1	99780	A
SNP	86	2489	1	100706	A
SNP	87	2490	1	104698	T
SNP	88	2491	1	105305	A
SNP	89	2492	1	106387	T
SNP	90	2493	1	107054	T
SNP	91	2494	1	107603	C
SNP	92	2495	1	111947	C
SNP	93	2496	1	113210	C
SNP	94	2497	1	114209	T
SNP	95	2498	1	114412	A
SNP	96	2504	1	114928	G
SNP	97	2506	1	118652	T
SNP	98	2507	1	120813	G
SNP	99	2508	1	123652	C
SNP	100	2509	1	125255	T
SNP	101	2511	1	129870	G
SNP	102	2512	1	137661	C
SNP	103	2513	1	138039	T
SNP	104	2514	1	138201	T
SNP	105	2515	1	141194	C
SNP	106	2516	1	142150	A
SNP	107	2517	1	142714	T
SNP	108	2518	1	142829	C
SNP	109	2519	1	144429	T
SNP	110	2520	1	144622	G
INS	111	5172	1	145202	AAT
SNP	112	2521	1	146322	G
SNP	113	2522	1	147971	G
SNP	114	2523	1	148388	T
SNP	115	2524	1	149327	T
SNP	116	2529	1	152115	A
SNP	117	2530	1	153782	A
SNP	118	2531	1	154427	G
SNP	119	2532	1	154860	A
SNP	120	2533	1	159435	C
SNP	121	2534	1	159816	A
SNP	122	2535	1	161875	G
SNP	123	2536	1	163398	G
DEL	124	5104,5175	1	163530	19
SNP	125	2537	1	165030	T
SNP	126	2538	1	165579	T
SNP	127	2539	1	166580	C
SUB	128	2540,2541	1	167119	2	CG
SNP	129	2542	1	167633	T
SNP	130	2545	1	168933	G
SNP	131	2546	1	170461	A
SNP	132	2547	1	172842	A
SNP	133	2548	1	173517	G
SNP	134	2549	1	174457	G
SNP	135	2550	1	176031	T
SNP	136	2551	1	177048	C
SNP	137	2552	1	177770	A
SNP	138	2553	1	178320	A
SNP	139	2554	1	179528	C
SNP	140	2555	1	180093	C
SNP	141	2556	1	180392	A
SNP	142	2557	1	182655	G
SNP	143	2558	1	182849	C
SNP	144	2559	1	183917	C
SNP	145	2560	1	185667	C
SNP	146	2561	1	185758	T
DEL	147	2562	1	186987	1
SNP	148	2563	1	187769	G
SNP	149	2564	1	187833	G
SNP	150	2565	1	187987	A
SNP	151	2566	1	190695	A
SNP	152	2567	1	193336	G
SNP	153	2568	1	195706	G
SNP	154	2569	1	197642	T
SNP	155	2570	1	198860	G
SNP	156	2571	1	199033	C
SNP	157	2572	1	200539	C
SNP	158	2573	1	202392	C
SNP	159	2574	1	204975	G
SNP	160	2575	1	205109	G
SNP	161	2576	1	206737	A
SNP	162	2577	1	210471	A
SNP	163	2578	1	215996	A
SNP	164	2579	1	216194	C
SNP	165	2580	1	217587	G
SNP	166	2581	1	217740	A
SNP	167	2582	1	218649	T
SNP	168	2583	1	219680	T
SNP	169	2586	1	220487	G
SNP	170	2587	1	220495	A
SNP	171	2588	1	220501	C
DEL	172	2589	1	220504	1
SNP	173	2590	1	221682	G
SNP	174	2591	1	226057	A
SNP	175	2592	1	226794	T
SNP	176	2593	1	227032	A
SNP	177	2595	1	230951	G
SNP	178	2596	1	231173	G
SNP	179	2597	1	238980	A
SNP	180	2598	1	239193	C
SNP	181	2599	1	242282	G
SNP	182	2602	1	245686	T
SNP	183	2603	1	246564	C
SNP	184	2604	1	247109	G
SNP	185	2605	1	247361	T
SNP	186	2606	1	248701	T
SNP	187	2607	1	249718	T
SNP	188	2608	1	250747	G
SNP	189	2613	1	251726	A
SNP	190	2614	1	252938	C
SNP	191	2615	1	253142	G
SNP	192	2616	1	253223	A
SNP	193	2617	1	254627	G
DEL	194	2618	1	254694	1	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=8	repeat_seq=T
SNP	195	2619	1	255273	C
SNP	196	2620	1	256354	T
DEL	197	5106,5187	1	256910	393
SNP	198	2621	1	258241	T
SNP	199	2622	1	258678	G
SNP	200	2625	1	260610	G
SNP	201	2626	1	267077	T
SNP	202	2627	1	267562	A
SNP	203	2628	1	268833	C
SNP	204	2629	1	269154	A
SNP	205	2630	1	271785	A
SNP	206	2631	1	272853	G
SNP	207	2632	1	273803	G
SNP	208	2633	1	276160	T
SNP	209	2634	1	276260	A
SNP	210	2635	1	276735	G
SNP	211	2636	1	277326	G
SNP	212	2637	1	278555	G
SNP	213	2638	1	278805	T
SNP	214	2640	1	279218	G
SNP	215	2641	1	284808	T
INS	216	2642	1	286154	T
SNP	217	2643	1	286160	A
SNP	218	2644	1	286551	T
SNP	219	2645	1	290423	G
DEL	220	5109,5189	1	291073	3	repeat_length=3	repeat_new_copies=2	repeat_ref_copies=3	repeat_seq=GCA
SNP	221	2646	1	291285	G
DEL	222	5110,5190	1	294674	1609
DEL	223	2647	1	296535	1	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=7	repeat_seq=A
SUB	224	2648,2649	1	296818	2	TA
SNP	225	2650	1	296821	C
SUB	226	2651,2652	1	296823	2	AA
SUB	227	2653,2654	1	296838	2	AT
SNP	228	2655	1	296844	T
SNP	229	2656	1	296862	G
SNP	230	2657	1	296870	T
SNP	231	2658	1	296872	T
DEL	232	2659	1	296884	1	repeat_length=1	repeat_new_copies=5	repeat_ref_copies=6	repeat_seq=T
SNP	233	2660	1	296887	A
SNP	234	2669	1	297992	T
SNP	235	2670	1	300884	C
SNP	236	2671	1	300957	A
INS	237	2672	1	301037	A	repeat_length=1	repeat_new_copies=10	repeat_ref_copies=9	repeat_seq=A
SNP	238	2673	1	301215	A
SNP	239	2674	1	302873	C
SNP	240	2675	1	303098	A
SNP	241	2676	1	303212	C
SNP	242	2677	1	304218	G
SNP	243	2678	1	304317	A
SNP	244	2679	1	304379	C
SNP	245	2680	1	306725	A
SNP	246	2681	1	307321	G
SNP	247	2682	1	308255	C
SNP	248	2683	1	310700	A
SNP	249	2684	1	312506	G
SNP	250	2685	1	313416	C
SNP	251	2686	1	313671	A
SNP	252	2687	1	313826	C
SNP	253	2688	1	314246	A
SNP	254	2689	1	318023	T
SNP	255	2690	1	318073	C
SNP	256	2691	1	318137	A
SNP	257	2692	1	318855	G
SNP	258	2693	1	319214	C
SNP	259	2694	1	319278	T
SNP	260	2696	1	320412	T
SNP	261	2697	1	320600	G
SNP	262	2698	1	320614	G
SNP	263	2699	1	321786	G
SNP	264	2700	1	322720	G
SNP	265	2701	1	324447	G
SNP	266	2702	1	325460	A
SNP	267	2703	1	326057	C
SNP	268	2704	1	326141	T
SNP	269	2705	1	326666	C
SNP	270	2717	1	327977	C
SNP	271	2718	1	328044	C
SNP	272	2719	1	328487	T
SNP	273	2720	1	328891	A
SNP	274	2721	1	332213	T
SNP	275	2722	1	333017	C
SNP	276	2723	1	333447	G
SNP	277	2724	1	333629	G
SNP	278	2725	1	336265	A
SNP	279	2726	1	340422	G
DEL	280	5112,5192	1	341790	12
SNP	281	2728	1	342428	T
SNP	282	2729	1	344274	C
SNP	283	2731	1	350515	T
SNP	284	2733	1	352123	T
SNP	285	2734	1	352251	A
SNP	286	2738	1	354798	G
SNP	287	2741	1	356705	G
SNP	288	2742	1	360796	G
SNP	289	2743	1	361124	G
SNP	290	2744	1	361868	C
SNP	291	2745	1	363292	A
DEL	292	5113,5194	1	363422	1462
SNP	293	2746	1	365182	T
SNP	294	2747	1	365188	T
SNP	295	2748	1	365234	G
SNP	296	2749	1	365238	C
SNP	297	2750	1	366198	C
SNP	298	2753	1	366945	C
SNP	299	2754	1	367222	A
SNP	300	2755	1	368251	T
SNP	301	2756	1	369133	A
SNP	302	2757	1	370162	A
SNP	303	2758	1	371533	A
SNP	304	2759	1	374261	C
DEL	305	5114,5195	1	375634	4
SNP	306	2760	1	376294	T
SNP	307	2761	1	376525	G
INS	308	2762	1	376694	A	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=7	repeat_seq=A
SNP	309	2764	1	382024	C
SNP	310	2765	1	382193	A
SNP	311	2766	1	383378	A
SNP	312	2767	1	384420	A
SNP	313	2768	1	384483	G
SNP	314	2769	1	386100	T
SNP	315	2772	1	394413	G
SNP	316	2773	1	394978	G
SNP	317	2774	1	400601	A
SNP	318	2775	1	401234	A
INS	319	2776	1	402211	T
SNP	320	2777	1	403420	G
SNP	321	2778	1	404795	A
SNP	322	2779	1	404919	C
SNP	323	2780	1	406315	C
SNP	324	2781	1	406378	A
SNP	325	2783	1	411023	C
INS	326	5196	1	412629	TTATT	repeat_length=5	repeat_new_copies=2	repeat_ref_copies=1	repeat_seq=TTATT
SNP	327	2784	1	413333	A
SNP	328	2785	1	415272	A
SNP	329	2786	1	415553	A
SNP	330	2787	1	417262	G
SNP	331	2788	1	417440	G
SNP	332	2789	1	418080	T
SNP	333	2790	1	418118	T
SNP	334	2791	1	419693	C
SNP	335	2792	1	420942	C
SNP	336	2793	1	421250	A
SNP	337	2797	1	428896	A
SNP	338	2798	1	432788	C
SNP	339	2799	1	433161	C
SNP	340	2800	1	433678	C
SNP	341	2801	1	436039	T
SNP	342	2802	1	438308	C
SNP	343	2803	1	439834	T
SNP	344	2804	1	441690	G
SNP	345	2805	1	441721	G
SNP	346	2806	1	441854	C
SNP	347	2807	1	441865	A
SNP	348	2808	1	441867	G
SNP	349	2809	1	441869	T
SNP	350	2810	1	441874	C
SNP	351	2813	1	443027	C
SNP	352	2814	1	443038	G
SNP	353	2815	1	443061	A
SNP	354	2816	1	443065	A
SNP	355	2817	1	443108	T
SNP	356	2818	1	443125	A
SNP	357	2819	1	443145	T
SNP	358	2820	1	443158	T
INS	359	5201	1	443171	GGCGGT
SNP	360	2821	1	443172	G
SNP	361	2822	1	443305	C
SNP	362	2823	1	443312	C
SNP	363	2824	1	443388	G
SUB	364	2825,2826,2827	1	443404	3	CGA
SNP	365	2828	1	443412	C
SUB	366	2829,2830	1	443416	2	AT
SNP	367	2831	1	443419	C
SNP	368	2832	1	443464	G
SUB	369	2833,2834	1	443473	2	TG
SNP	370	2835	1	443477	G
SNP	371	2836	1	443485	G
SNP	372	2837	1	443491	G
SNP	373	2838	1	443522	A
SNP	374	2839	1	445475	G
SNP	375	2840	1	446207	T
SNP	376	2841	1	446507	C
SNP	377	2842	1	446512	C
SNP	378	2843	1	452849	T
SNP	379	2844	1	452925	T
SNP	380	2845	1	453147	T
SNP	381	2846	1	453423	C
SNP	382	2850	1	456685	A
SNP	383	2851	1	457350	C
SNP	384	2853	1	459591	G
SNP	385	2854	1	460664	A
SNP	386	2855	1	461914	T
SNP	387	2856	1	462512	G
SNP	388	2857	1	462516	C
SNP	389	2869	1	462618	A
SNP	390	2870	1	463065	A
SNP	391	2871	1	463074	A
SNP	392	2872	1	464065	C
SNP	393	2873	1	464525	T
SNP	394	2874	1	464927	C
SNP	395	2876	1	465377	A
SNP	396	2877	1	465982	G
SNP	397	2878	1	466173	C
SNP	398	2880	1	469426	T
SNP	399	2881	1	470361	A
SNP	400	2882	1	472408	C
SNP	401	2883	1	473475	T
SNP	402	2884	1	478325	C
SNP	403	2885	1	478331	G
SNP	404	2886	1	482989	C
SNP	405	2887	1	484248	C
SNP	406	2888	1	486801	G
DEL	407	2889	1	488523	1	repeat_length=1	repeat_new_copies=4	repeat_ref_copies=5	repeat_seq=C
SNP	408	2890	1	489045	T
SUB	409	2891,2892,2893	1	491859	3	GTC
SNP	410	2894	1	491972	A
SNP	411	2895	1	492632	A
SNP	412	2896	1	493370	T
SNP	413	2897	1	493514	C
SNP	414	2898	1	494587	C
SNP	415	2899	1	497935	A
SNP	416	2900	1	501467	T
SNP	417	2901	1	501755	A
SNP	418	2902	1	502494	A
SNP	419	2903	1	504254	T
SNP	420	2904	1	504427	A
SNP	421	2905	1	505279	G
SNP	422	2907	1	505850	C
SNP	423	2908	1	506935	A
SNP	424	2909	1	512098	T
SNP	425	2910	1	512736	C
SNP	426	2911	1	513896	A
SNP	427	2912	1	516211	T
DEL	428	5117,5208	1	516308	16	repeat_length=16	repeat_new_copies=1	repeat_ref_copies=2	repeat_seq=TCAACATGGTAACAAA
SNP	429	2913	1	516406	A
SNP	430	2914	1	517090	T
SNP	431	2915	1	517399	C
SNP	432	2916	1	518700	T
INS	433	2917,2918	1	519706	TG
SNP	434	2919	1	520576	G
SNP	435	2922	1	525610	G
SNP	436	2923	1	526358	T
SNP	437	2924	1	528385	T
SNP	438	2925	1	529478	A
SNP	439	2926	1	531734	C
SNP	440	2927	1	534971	C
SNP	441	2928	1	536729	G
SNP	442	2929	1	539340	C
SNP	443	2930	1	539475	G
SNP	444	2931	1	539682	G
SNP	445	2932	1	541354	A
SNP	446	2933	1	541849	G
SNP	447	2934	1	542722	G
SNP	448	2935	1	545602	C
SNP	449	2936	1	545989	A
SNP	450	2937	1	547892	G
SNP	451	2938	1	548158	T
SNP	452	2939	1	548615	G
SNP	453	2940	1	548674	G
SNP	454	2941	1	550387	A
SNP	455	2942	1	551728	C
SNP	456	2943	1	552295	T
SNP	457	2944	1	554856	C
SUB	458	2947,2948	1	555244	2	GT
SNP	459	2949	1	555250	T
SNP	460	2950	1	555370	T
SNP	461	2951	1	559516	T
SNP	462	2952	1	559931	G
SNP	463	2955	1	561020	C
SNP	464	2956	1	561754	C
SNP	465	2957	1	562596	C
SNP	466	2958	1	564299	G
SUB	467	2962,2963	1	564742	2	GT
SNP	468	2964	1	564748	T
SNP	469	2965	1	564809	A
SNP	470	2966	1	566304	T
SNP	471	2967	1	566809	T
SNP	472	2968	1	567047	C
SNP	473	2969	1	567550	C
SNP	474	2970	1	571830	T
SNP	475	2971	1	571833	C
SNP	476	2972	1	571925	G
INS	477	2973	1	577404	T
SNP	478	2974	1	579092	C
SNP	479	2975	1	579103	T
SNP	480	2976	1	579155	G
SNP	481	2977	1	579159	C
SNP	482	2978	1	579165	A
SNP	483	2979	1	579167	A
SNP	484	2980	1	579170	C
SNP	485	2981	1	579173	C
SNP	486	2982	1	579175	A
SNP	487	2983	1	579179	G
SUB	488	2984,2985	1	579181	2	TC
INS	489	2986,2987	1	579194	CT
SNP	490	2988	1	579201	A
SNP	491	2989	1	585194	A
SNP	492	2990	1	589631	C
SNP	493	2991	1	590948	A
SNP	494	2992	1	596899	T
SNP	495	2993	1	598883	T
SNP	496	2994	1	599711	C
SNP	497	2995	1	601204	C
DEL	498	5120,5212	1	601481	4	repeat_length=4	repeat_new_copies=1	repeat_ref_copies=2	repeat_seq=AGGC
SNP	499	2996	1	601717	A
SNP	500	2997	1	602296	C
SNP	501	2998	1	602923	T
SNP	502	2999	1	603702	G
SNP	503	3000	1	603784	G
SNP	504	3001	1	605885	T
SNP	505	3002	1	606775	T
SNP	506	3003	1	608124	A
SNP	507	3005	1	608938	A
SNP	508	3006	1	610396	G
SNP	509	3007	1	610874	C
SNP	510	3008	1	613303	G
SNP	511	3009	1	615004	C
SNP	512	3010	1	617630	T
SNP	513	3011	1	620470	T
SNP	514	3012	1	620640	T
SNP	515	3013	1	621244	T
SNP	516	3015	1	627712	A
SNP	517	3016	1	627925	C
SNP	518	3017	1	628811	T
SNP	519	3018	1	628970	G
SNP	520	3019	1	629353	T
SNP	521	3020	1	634697	G
SNP	522	3021	1	637372	A
SNP	523	3022	1	639112	G
SNP	524	3023	1	641167	T
SNP	525	3024	1	641193	A
SNP	526	3025	1	642729	T
SNP	527	3026	1	643355	G
SNP	528	3027	1	645215	T
SNP	529	3028	1	646127	G
SNP	530	3029	1	646441	T
SNP	531	3031	1	653757	G
SNP	532	3032	1	656163	C
SNP	533	3033	1	658122	C
SNP	534	3034	1	658677	G
SNP	535	3035	1	659806	C
SNP	536	3036	1	659972	T
SNP	537	3038	1	663209	T
SNP	538	3039	1	663621	G
SNP	539	3040	1	664438	A
SNP	540	3041	1	664442	T
SNP	541	3043	1	666327	A
SNP	542	3044	1	666739	T
SNP	543	3046	1	667383	G
SNP	544	3047	1	674743	C
DEL	545	3048	1	674950	1
SNP	546	3049	1	675002	A
SNP	547	3050	1	675615	C
SNP	548	3051	1	676935	C
SNP	549	3052	1	677517	G
SNP	550	3053	1	679116	T
SNP	551	3054	1	679814	T
SNP	552	3055	1	682009	C
SNP	553	3056	1	684269	C
SNP	554	3057	1	686694	C
SUB	555	5122,5216	1	686937	76	GATATTTCTGATATTTCTGTTGATATGCGTCGAAATGAAAGGAATTAGGATGAATAA
DEL	556	3058	1	688946	1	repeat_length=1	repeat_new_copies=4	repeat_ref_copies=5	repeat_seq=T
DEL	557	3059	1	691928	1
SNP	558	3060	1	693210	G
SNP	559	3062	1	694080	A
SNP	560	3063	1	696691	G
SNP	561	3064	1	697400	A
SNP	562	3065	1	698428	A
SNP	563	3066	1	699394	C
SNP	564	3067	1	703123	G
SNP	565	3068	1	703356	C
SNP	566	3069	1	703376	A
SNP	567	3070	1	703499	T
SNP	568	3071	1	704998	A
SNP	569	3072	1	705646	C
SNP	570	3073	1	707381	C
SNP	571	3074	1	707424	G
SNP	572	3075	1	708975	C
SNP	573	3076	1	714653	T
SNP	574	3077	1	715798	G
SNP	575	3078	1	718032	T
INS	576	3079	1	718379	T	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=T
SNP	577	3080	1	720011	C
SNP	578	3081	1	720396	G
SNP	579	3082	1	720644	C
INS	580	5218	1	722525	GGTAAA
SNP	581	3084	1	722669	T
SNP	582	3085	1	722739	C
SNP	583	3086	1	722755	T
SNP	584	3087	1	723275	T
SNP	585	3088	1	724746	T
DEL	586	3089	1	726574	1
SNP	587	3090	1	727242	C
SNP	588	3091	1	727259	A
SNP	589	3092	1	727277	A
SNP	590	3093	1	727287	G
SNP	591	3094	1	727299	G
SNP	592	3095	1	727320	T
SUB	593	3096,3097	1	727322	2	AT
SNP	594	3098	1	727327	G
SNP	595	3099	1	727329	G
SNP	596	3100	1	727332	A
SNP	597	3101	1	727338	T
SNP	598	3102	1	727341	G
SNP	599	3103	1	727358	T
SNP	600	3104	1	727380	C
SNP	601	3105	1	727449	A
SNP	602	3106	1	727453	C
SNP	603	3107	1	727456	T
SNP	604	3108	1	727479	T
SNP	605	3109	1	727500	G
SNP	606	3110	1	727503	T
SNP	607	3111	1	727515	G
SNP	608	3112	1	727531	C
SNP	609	3113	1	727554	C
SNP	610	3114	1	727558	A
SNP	611	3115	1	727623	A
SNP	612	3116	1	727684	G
SNP	613	3117	1	727691	A
SNP	614	3118	1	727713	A
SNP	615	3119	1	727743	T
DEL	616	3121,3122	1	727752	2
DEL	617	3123,3124	1	727754	2
SNP	618	3125	1	727763	T
SNP	619	3126	1	727768	G
SNP	620	3127	1	727773	T
SNP	621	3128	1	727785	G
SNP	622	3129	1	727801	C
SNP	623	3130	1	727806	G
SNP	624	3131	1	727808	A
SNP	625	3132	1	727817	A
SNP	626	3133	1	727865	A
SNP	627	3134	1	727894	T
SNP	628	3135	1	727897	C
SUB	629	3136,3137	1	727927	2	TG
INS	630	3138	1	727936	G
SUB	631	3139,3140	1	727940	2	C
SNP	632	3141	1	727960	T
SNP	633	3142	1	727970	A
SNP	634	3143	1	727986	C
SNP	635	3144	1	728020	G
SNP	636	3145	1	728038	A
SNP	637	3146	1	728042	G
SNP	638	3147	1	728075	T
SNP	639	3148	1	728092	G
SUB	640	3149,3150	1	728116	2	CG
SNP	641	3151	1	728128	T
SUB	642	3152,3153	1	728143	2	CT
SNP	643	3154	1	728174	G
SNP	644	3155	1	728192	C
SNP	645	3156	1	728194	A
SNP	646	3157	1	728203	C
SNP	647	3158	1	728218	G
SNP	648	3159	1	728314	T
SNP	649	3160	1	728326	C
SNP	650	3161	1	728338	T
SNP	651	3162	1	728347	T
SNP	652	3163	1	728362	T
SNP	653	3164	1	728374	C
SNP	654	3165	1	728387	A
SNP	655	3166	1	728392	G
SNP	656	3167	1	728476	T
SNP	657	3168	1	728506	T
SNP	658	3169	1	728515	T
SNP	659	3170	1	728520	C
SNP	660	3171	1	728533	A
SUB	661	3172,3173	1	728547	2	CT
SNP	662	3174	1	728561	T
SNP	663	3175	1	728569	T
SUB	664	3176,3177	1	728572	2	CA
SNP	665	3178	1	728578	T
SNP	666	3179	1	728598	A
SNP	667	3180	1	728609	C
SNP	668	3181	1	728611	T
SNP	669	3182	1	728635	A
SNP	670	3183	1	728647	C
SUB	671	3184,3185	1	728652	2	CA
SNP	672	3186	1	728665	T
SNP	673	3187	1	728671	G
SNP	674	3188	1	728673	C
SNP	675	3189	1	728677	C
SNP	676	3190	1	728728	T
SNP	677	3191	1	728743	T
SNP	678	3192	1	728746	G
SNP	679	3193	1	728764	T
SNP	680	3194	1	728770	C
SNP	681	3195	1	728786	C
SNP	682	3196	1	728802	T
SNP	683	3197	1	728824	T
SUB	684	3198,3199	1	728841	2	TG
SNP	685	3200	1	728848	T
SNP	686	3201	1	728851	T
SNP	687	3202	1	728854	T
SNP	688	3203	1	728861	T
SNP	689	3204	1	728873	G
SUB	690	3205,3206	1	728931	2	AA
SNP	691	3207	1	728939	G
SNP	692	3208	1	728944	T
SNP	693	3209	1	728957	T
SNP	694	3210	1	728960	C
SNP	695	3211	1	728966	C
SNP	696	3212	1	728968	C
SNP	697	3213	1	728974	G
SNP	698	3214	1	728977	C
SNP	699	3215	1	728985	G
SNP	700	3216	1	728994	C
SNP	701	3217	1	729009	T
SNP	702	3218	1	729013	T
SNP	703	3219	1	729032	A
SNP	704	3220	1	729061	C
SUB	705	3221,3222	1	729063	2	GT
SNP	706	3223	1	729067	A
SNP	707	3224	1	729094	T
SNP	708	3225	1	729103	C
SNP	709	3226	1	729118	A
SNP	710	3227	1	729133	G
SNP	711	3228	1	729142	G
SUB	712	3229,3230	1	729144	2	AA
SNP	713	3231	1	729152	C
SNP	714	3232	1	729157	T
SNP	715	3233	1	729174	T
SNP	716	3234	1	729193	T
SNP	717	3235	1	729209	G
SNP	718	3236	1	729213	C
SUB	719	3237,3238	1	729216	2	CG
SNP	720	3239	1	729226	G
SUB	721	3240,3241	1	729232	2	AT
SNP	722	3242	1	729235	G
SNP	723	3243	1	729250	T
SNP	724	3244	1	729252	G
SNP	725	3245	1	729257	A
SNP	726	3246	1	729271	G
SUB	727	3247,3248	1	729288	2	TA
SNP	728	3249	1	729304	T
SNP	729	3250	1	729319	C
SNP	730	3251	1	729339	C
SUB	731	3252,3253	1	729346	2	TG
SNP	732	3254	1	729349	C
SNP	733	3255	1	729351	T
SNP	734	3256	1	729361	C
SNP	735	3257	1	729373	C
SNP	736	3258	1	729376	G
SNP	737	3259	1	729388	T
SNP	738	3260	1	729394	G
SNP	739	3261	1	729397	T
SUB	740	3262,3263	1	729427	2	AG
SNP	741	3264	1	729433	C
SNP	742	3265	1	729448	T
SNP	743	3266	1	729473	C
SNP	744	3267	1	729514	C
SNP	745	3268	1	729548	C
SNP	746	3269	1	729557	T
SNP	747	3270	1	729562	T
SNP	748	3271	1	729565	C
SNP	749	3272	1	729568	T
SNP	750	3273	1	729578	G
SNP	751	3274	1	729599	A
SNP	752	3275	1	729606	G
SNP	753	3276	1	729617	A
SNP	754	3277	1	729649	T
SNP	755	3278	1	729664	C
SNP	756	3279	1	729700	A
SNP	757	3280	1	729719	T
SNP	758	3281	1	729724	A
SNP	759	3282	1	729727	A
SNP	760	3283	1	729732	G
SUB	761	3284,3285	1	729736	2	AA
SNP	762	3286	1	729740	C
SNP	763	3287	1	729748	C
SNP	764	3288	1	729760	G
SNP	765	3289	1	729769	A
SNP	766	3290	1	729772	A
SNP	767	3291	1	729774	G
SUB	768	3292,3293	1	729780	2	AG
SNP	769	3294	1	729784	T
SNP	770	3295	1	729787	T
SNP	771	3296	1	729800	C
SNP	772	3297	1	729808	A
SNP	773	3298	1	729823	C
SUB	774	3299,3300	1	729825	2	TG
SNP	775	3301	1	729829	C
SNP	776	3302	1	729832	C
SUB	777	3303,3304	1	729895	2	TT
SNP	778	3305	1	729922	G
SNP	779	3306	1	729940	A
SNP	780	3307	1	729943	G
DEL	781	3308	1	729966	1
INS	782	3309	1	729968	A
SNP	783	3310	1	729994	T
SNP	784	3311	1	730024	A
SNP	785	3312	1	730030	C
SNP	786	3313	1	730076	A
SNP	787	3314	1	730087	G
SNP	788	3315	1	730108	G
SNP	789	3316	1	730114	G
SNP	790	3317	1	730120	T
SNP	791	3318	1	730126	A
SNP	792	3319	1	730134	A
SNP	793	3320	1	730138	G
SNP	794	3321	1	730155	G
SNP	795	3322	1	730162	A
SNP	796	3323	1	730177	C
SNP	797	3324	1	730181	T
SNP	798	3325	1	730192	A
SNP	799	3326	1	730210	A
SNP	800	3327	1	730218	C
SNP	801	3328	1	730224	G
SNP	802	3329	1	730250	G
SUB	803	3330,3331	1	730255	2	CC
SNP	804	3332	1	730262	G
SNP	805	3333	1	730264	T
SNP	806	3334	1	730291	A
SNP	807	3335	1	730305	T
SNP	808	3336	1	730334	G
SNP	809	3337	1	730345	A
SNP	810	3338	1	730347	A
SNP	811	3339	1	730364	G
SNP	812	3340	1	730378	G
SNP	813	3341	1	730381	T
SNP	814	3342	1	730397	A
SNP	815	3343	1	730412	T
SUB	816	3344,3345	1	730415	2	GC
SNP	817	3346	1	730462	T
SNP	818	3347	1	730482	A
INS	819	3348	1	730494	T
SNP	820	3349	1	730510	A
SNP	821	3350	1	730515	A
SNP	822	3351	1	730526	T
SNP	823	3352	1	730559	C
SNP	824	3353	1	730583	C
SNP	825	3354	1	730586	T
SNP	826	3355	1	730607	G
SNP	827	3356	1	730616	G
SNP	828	3357	1	730631	C
SNP	829	3358	1	730634	C
SNP	830	3359	1	730643	T
SNP	831	3360	1	730652	A
SNP	832	3361	1	730663	C
SNP	833	3362	1	730668	A
SNP	834	3363	1	730690	A
SNP	835	3364	1	730694	C
SNP	836	3365	1	730752	C
SNP	837	3366	1	730758	C
SNP	838	3367	1	730790	T
SUB	839	3368,3369	1	730794	2	CA
SNP	840	3370	1	730802	A
SNP	841	3371	1	730924	T
DEL	842	3372	1	730985	1	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=7	repeat_seq=A
SNP	843	3373	1	731026	G
SNP	844	3374	1	731035	T
SNP	845	3375	1	731088	T
SNP	846	3376	1	731091	T
SNP	847	3377	1	731109	T
SNP	848	3378	1	731114	C
SNP	849	3379	1	731180	T
SNP	850	3380	1	731217	C
SNP	851	3381	1	731259	T
SNP	852	3382	1	731263	T
SUB	853	3383,3384	1	731309	2	AA
SNP	854	3385	1	731321	A
SNP	855	3386	1	731329	G
SNP	856	3387	1	731490	T
SNP	857	3388	1	731583	G
SNP	858	3389	1	731592	G
SNP	859	3390	1	731781	C
SNP	860	3391	1	732002	T
SNP	861	3392	1	732023	C
SNP	862	3393	1	732167	C
SNP	863	3394	1	732674	A
SNP	864	3395	1	733802	T
SNP	865	3396	1	734547	G
SNP	866	3397	1	738209	A
SNP	867	3398	1	738522	G
SNP	868	3399	1	740629	C
SNP	869	3400	1	740634	C
SNP	870	3401	1	741281	C
SNP	871	3402	1	742252	G
SNP	872	3403	1	744213	C
SNP	873	3404	1	746183	G
SNP	874	3405	1	749149	A
SNP	875	3406	1	749864	T
SNP	876	3407	1	750343	C
SNP	877	3408	1	752812	G
SNP	878	3409	1	753324	G
INS	879	5221	1	757654	GAGAACAAA	repeat_length=9	repeat_new_copies=2	repeat_ref_copies=1	repeat_seq=GAGAACAAA
SNP	880	3412	1	759595	G
SNP	881	3413	1	759678	G
SNP	882	3414	1	759715	T
SNP	883	3415	1	769066	A
SNP	884	3416	1	771525	C
SNP	885	3417	1	771946	A
SNP	886	3418	1	772098	C
SNP	887	3419	1	773408	T
SNP	888	3422	1	775301	G
SNP	889	3423	1	776474	T
SNP	890	3424	1	777105	T
SNP	891	3425	1	777427	G
SNP	892	3426	1	780114	A
INS	893	3427	1	782378	A	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=7	repeat_seq=A
SNP	894	3428	1	782728	G
SNP	895	3429	1	782961	C
SNP	896	3430	1	783342	C
SNP	897	3431	1	784143	A
SNP	898	3432	1	784355	T
SNP	899	3433	1	786430	G
INS	900	3434	1	786633	T
SNP	901	3435	1	786698	G
DEL	902	5123,5224	1	787281	1650
SNP	903	3436	1	790219	G
SNP	904	3437	1	791022	G
SNP	905	3438	1	792538	G
SNP	906	3439	1	792735	A
SNP	907	3440	1	793277	G
SNP	908	3441	1	795324	T
SNP	909	3442	1	795497	A
SNP	910	3443	1	797590	T
DEL	911	5124,5225	1	800057	1865
SNP	912	3444	1	802133	G
SNP	913	3445	1	804322	C
SNP	914	3446	1	804612	A
SNP	915	3447	1	807185	G
DEL	916	3448	1	810498	1
SNP	917	3449	1	810909	A
SNP	918	3450	1	811434	A
SNP	919	3451	1	812925	C
DEL	920	3452	1	813804	1	repeat_length=1	repeat_new_copies=5	repeat_ref_copies=6	repeat_seq=C
SNP	921	3453	1	814696	T
SNP	922	3454	1	815297	C
SNP	923	3455	1	818845	C
SNP	924	3456	1	821406	T
SNP	925	3457	1	822936	G
SNP	926	3458	1	823397	C
SNP	927	3459	1	824506	G
SNP	928	3460	1	825460	G
SNP	929	3461	1	826130	G
SNP	930	3462	1	826245	C
DEL	931	5125,5226	1	827170	3	repeat_length=1	repeat_new_copies=9	repeat_ref_copies=12	repeat_seq=C
SNP	932	3464	1	830739	G
SNP	933	3465	1	833539	A
SNP	934	3466	1	833699	C
SNP	935	3467	1	835379	T
SNP	936	3468	1	835900	G
SNP	937	3469	1	837146	A
INS	938	5227	1	837399	GTACTTCGT
SNP	939	3470	1	840208	A
SNP	940	3471	1	841927	T
SNP	941	3472	1	849991	C
SNP	942	3473	1	851588	A
SNP	943	3474	1	851736	T
SNP	944	3475	1	854529	C
SNP	945	3476	1	858385	C
SNP	946	3477	1	858722	G
SNP	947	3478	1	861458	C
SNP	948	3479	1	862433	C
SNP	949	3480	1	862720	T
SNP	950	3481	1	863867	T
SNP	951	3482	1	864239	C
SNP	952	3483	1	864370	A
SNP	953	3484	1	864462	C
DEL	954	5126,5228	1	865250	1249
SUB	955	3485,3486	1	867229	2	TT
SNP	956	3487	1	868410	G
SNP	957	3488	1	868480	A
SNP	958	3489	1	868543	T
SNP	959	3490	1	868687	T
SNP	960	3526	1	870474	C
SNP	961	3527	1	876153	A
SNP	962	3528	1	878687	A
SNP	963	3529	1	879065	G
SNP	964	3530	1	879657	T
SNP	965	3531	1	879943	A
SNP	966	3532	1	882742	G
SNP	967	3533	1	884089	C
SNP	968	3534	1	887745	G
SNP	969	3536	1	890968	T
SNP	970	3537	1	894964	C
SUB	971	3538,3539	1	895637	2	AA
SNP	972	3540	1	904900	G
SNP	973	3541	1	908454	G
SNP	974	3542	1	911362	G
SNP	975	3543	1	912184	A
SNP	976	3544	1	913150	G
SNP	977	3545	1	913941	A
SNP	978	3546	1	914047	A
SNP	979	3547	1	914343	T
SNP	980	3548	1	917916	C
SNP	981	3549	1	918831	A
SNP	982	3550	1	919198	G
SNP	983	3551	1	919371	C
SNP	984	3552	1	919692	T
SNP	985	3553	1	921092	T
SNP	986	3554	1	923224	A
SNP	987	3555	1	924784	G
SNP	988	3556	1	929166	C
SNP	989	3558	1	933075	C
SNP	990	3559	1	933585	G
SNP	991	3560	1	933685	G
SNP	992	3561	1	935810	G
DEL	993	3562	1	937457	1
SNP	994	3563	1	938857	G
SNP	995	3564	1	944280	A
SNP	996	3565	1	945426	C
SNP	997	3566	1	948796	T
SNP	998	3567	1	949085	A
SNP	999	3568	1	952537	T
SNP	1000	3569	1	952849	T
SNP	1001	3570	1	952970	T
SNP	1002	3571	1	953354	T
SNP	1003	3572	1	954796	T
SNP	1004	3573	1	954977	T
SNP	1005	3574	1	955787	C
SNP	1006	3575	1	956540	C
SNP	1007	3576	1	957613	G
SNP	1008	3577	1	958935	C
SNP	1009	3578	1	959009	G
SNP	1010	3579	1	959015	A
SNP	1011	3580	1	962142	T
SNP	1012	3581	1	964140	G
SNP	1013	3582	1	966476	A
SNP	1014	3583	1	966584	G
SNP	1015	3584	1	966843	T
SNP	1016	3585	1	969783	A
SNP	1017	3586	1	969895	A
SNP	1018	3587	1	970208	T
SNP	1019	3588	1	970864	A
SNP	1020	3589	1	971187	T
DEL	1021	3590	1	971730	1	repeat_length=1	repeat_new_copies=4	repeat_ref_copies=5	repeat_seq=A
SNP	1022	3591	1	973440	G
SNP	1023	3593	1	974982	C
SNP	1024	3594	1	980539	C
SNP	1025	3595	1	981754	C
SNP	1026	3596	1	984118	G
SNP	1027	3597	1	987317	G
SNP	1028	3598	1	992448	G
SNP	1029	3599	1	994208	A
SNP	1030	3600	1	995088	T
SNP	1031	3601	1	996301	C
SNP	1032	3602	1	997507	A
SNP	1033	3603	1	997702	G
SNP	1034	3604	1	999677	A
SNP	1035	3605	1	1001803	G
SNP	1036	3606	1	1001842	A
SNP	1037	3607	1	1001870	G
SNP	1038	3608	1	1002291	A
SNP	1039	3609	1	1003612	C
SNP	1040	3610	1	1004318	T
SNP	1041	3611	1	1004715	G
SNP	1042	3612	1	1005131	T
SNP	1043	3613	1	1006105	C
SNP	1044	3614	1	1006451	G
SNP	1045	3615	1	1007228	G
SNP	1046	3616	1	1007571	G
SNP	1047	3617	1	1009200	T
SNP	1048	3618	1	1015103	G
SNP	1049	3619	1	1016132	C
SNP	1050	3620	1	1019136	G
SNP	1051	3621	1	1021331	A
INS	1052	3622	1	1022099	A	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=A
SNP	1053	3623	1	1022280	G
SNP	1054	3624	1	1022785	A
SNP	1055	3625	1	1022997	G
SNP	1056	3626	1	1023520	A
SNP	1057	3627	1	1026037	T
SNP	1058	3628	1	1027890	G
SNP	1059	3629	1	1029359	C
SNP	1060	3630	1	1030184	A
SNP	1061	3631	1	1030646	T
SNP	1062	3632	1	1030895	C
SNP	1063	3633	1	1032219	C
SNP	1064	3634	1	1032441	T
SNP	1065	3635	1	1035352	T
SNP	1066	3636	1	1036648	C
SNP	1067	3638	1	1037242	T
SNP	1068	3639	1	1037271	C
SNP	1069	3640	1	1037274	G
SNP	1070	3641	1	1037280	A
SNP	1071	3642	1	1037295	C
SNP	1072	3650	1	1039509	A
SNP	1073	3651	1	1045438	C
SNP	1074	3652	1	1046415	G
SNP	1075	3653	1	1049770	C
SNP	1076	3654	1	1055338	T
SNP	1077	3658	1	1057519	T
SNP	1078	3659	1	1058600	C
SNP	1079	3660	1	1059457	C
SNP	1080	3661	1	1059495	A
SNP	1081	3662	1	1060285	C
SNP	1082	3663	1	1061051	T
SNP	1083	3664	1	1061183	T
SNP	1084	3665	1	1061364	T
SNP	1085	3666	1	1062527	T
SNP	1086	3667	1	1064009	C
SNP	1087	3668	1	1064874	T
SNP	1088	3669	1	1064961	G
SNP	1089	3670	1	1066691	G
SNP	1090	3671	1	1067498	G
SNP	1091	3672	1	1067795	C
SNP	1092	3673	1	1068432	A
SNP	1093	3674	1	1069525	A
SNP	1094	3675	1	1074108	T
SNP	1095	3676	1	1076204	C
SNP	1096	3677	1	1077067	T
SNP	1097	3678	1	1078597	G
SNP	1098	3679	1	1079936	G
DEL	1099	3680	1	1080127	1
SNP	1100	3681	1	1080270	A
SNP	1101	3682	1	1080438	C
SNP	1102	3683	1	1080726	G
SNP	1103	3684	1	1080751	C
SNP	1104	3687	1	1085769	C
SNP	1105	3688	1	1086459	C
SNP	1106	3689	1	1088206	G
SNP	1107	3690	1	1089886	C
SNP	1108	3691	1	1089888	C
SNP	1109	3692	1	1090237	G
SNP	1110	3693	1	1090390	A
SNP	1111	3694	1	1090604	T
SNP	1112	3695	1	1091429	C
SNP	1113	3696	1	1092990	C
SNP	1114	3697	1	1094121	T
SNP	1115	3698	1	1094193	T
SNP	1116	3699	1	1094461	T
SNP	1117	3700	1	1094715	C
SNP	1118	3701	1	1095176	G
SNP	1119	3702	1	1095729	T
SNP	1120	3703	1	1097743	C
SNP	1121	3704	1	1099031	C
SNP	1122	3705	1	1099284	T
SNP	1123	3706	1	1099791	A
SNP	1124	3707	1	1100312	C
SNP	1125	3708	1	1103125	C
SNP	1126	3709	1	1106035	G
SNP	1127	3710	1	1108726	T
INS	1128	3711,3712	1	1109767	TG
SNP	1129	3713	1	1110476	G
SNP	1130	3714	1	1110644	C
SNP	1131	3715	1	1110711	G
SNP	1132	3716	1	1110797	T
SNP	1133	3717	1	1112520	A
SNP	1134	3718	1	1115237	C
SNP	1135	3719	1	1118430	G
SNP	1136	3720	1	1120733	A
SNP	1137	3721	1	1121433	G
SNP	1138	3722	1	1122062	G
SNP	1139	3723	1	1122540	T
SNP	1140	3724	1	1122750	G
SNP	1141	3725	1	1125979	C
SNP	1142	3726	1	1126921	G
SNP	1143	3727	1	1127508	C
SNP	1144	3728	1	1127526	C
SNP	1145	3729	1	1127538	T
SNP	1146	3730	1	1127555	A
SUB	1147	3731,3732,3733,3734	1	1127575	4	TTTG
SNP	1148	3735	1	1127646	C
SNP	1149	3736	1	1127652	G
SNP	1150	3737	1	1127686	C
SNP	1151	3738	1	1127688	C
SNP	1152	3745	1	1129580	G
SNP	1153	3746	1	1129670	A
SNP	1154	3747	1	1129676	A
SNP	1155	3748	1	1131879	T
SNP	1156	3749	1	1132505	T
SNP	1157	3759	1	1134825	G
SNP	1158	3760	1	1134834	A
SNP	1159	3761	1	1134837	G
SNP	1160	3762	1	1134888	G
SNP	1161	3763	1	1134906	C
SNP	1162	3764	1	1134965	C
SUB	1163	3765,3766,3767	1	1135008	3	GTA
SNP	1164	3768	1	1135016	C
SUB	1165	3769,3770	1	1135018	2	CC
SNP	1166	3771	1	1135028	A
SNP	1167	3772	1	1135045	A
SUB	1168	3773,3774	1	1135056	2	AA
SNP	1169	3775	1	1135069	C
SUB	1170	3776,3777	1	1135071	2	TC
SNP	1171	3778	1	1135078	A
SNP	1172	3779	1	1135092	G
SNP	1173	3780	1	1135094	A
SNP	1174	3781	1	1136133	T
SNP	1175	3782	1	1136158	A
SNP	1176	3783	1	1137480	G
SNP	1177	3784	1	1137755	C
SNP	1178	3785	1	1138194	C
SNP	1179	3786	1	1141622	A
SNP	1180	3787	1	1142257	G
INS	1181	5241	1	1143913	CACCT	repeat_length=5	repeat_new_copies=5	repeat_ref_copies=4	repeat_seq=CACCT
INS	1182	5242	1	1144144	TAT
SNP	1183	3788	1	1144894	A
SNP	1184	3789	1	1145227	C
SNP	1185	3790	1	1145287	A
SNP	1186	3791	1	1145486	G
DEL	1187	5136,5243	1	1146264	3545
SNP	1188	3792	1	1150218	C
SNP	1189	3793	1	1151322	A
SNP	1190	3794	1	1152898	A
SNP	1191	3795	1	1153243	A
SNP	1192	3797	1	1155945	T
SNP	1193	3798	1	1156958	G
SNP	1194	3799	1	1158565	A
SNP	1195	3800	1	1159605	T
SNP	1196	3801	1	1159864	T
SNP	1197	3802	1	1161827	G
SNP	1198	3803	1	1163916	C
SNP	1199	3804	1	1164270	C
SNP	1200	3806	1	1165205	G
SNP	1201	3807	1	1166962	G
SNP	1202	3808	1	1167326	T
SNP	1203	3809	1	1171117	G
SNP	1204	3810	1	1171573	G
SNP	1205	3811	1	1172641	A
SNP	1206	3812	1	1173883	A
SNP	1207	3813	1	1174137	C
SNP	1208	3814	1	1175145	G
SNP	1209	3815	1	1176066	G
SNP	1210	3816	1	1177777	G
SNP	1211	3817	1	1177780	A
SNP	1212	3818	1	1179180	G
SNP	1213	3819	1	1181392	T
SNP	1214	3820	1	1183057	C
SNP	1215	3821	1	1183721	C
SNP	1216	3822	1	1185277	A
SNP	1217	3824	1	1187631	C
SNP	1218	3825	1	1188474	G
SNP	1219	3826	1	1190848	A
SNP	1220	3827	1	1192724	C
SNP	1221	3828	1	1196358	T
SNP	1222	3829	1	1197981	T
SNP	1223	3830	1	1198517	T
SNP	1224	3831	1	1199427	G
SNP	1225	3832	1	1200588	T
SNP	1226	3833	1	1201836	A
SNP	1227	3834	1	1202610	A
SNP	1228	3835	1	1205093	A
INS	1229	3836,3837	1	1205438	CC	repeat_length=1	repeat_new_copies=9	repeat_ref_copies=7	repeat_seq=C
SNP	1230	3838	1	1205655	T
SNP	1231	3839	1	1208104	T
SNP	1232	3840	1	1208434	C
SNP	1233	3841	1	1209018	G
SNP	1234	3842	1	1212251	C
SNP	1235	3843	1	1213334	T
SNP	1236	3844	1	1217219	T
SNP	1237	3845	1	1221160	C
SNP	1238	3846	1	1221468	G
SNP	1239	3847	1	1223084	C
SNP	1240	3848	1	1224827	T
SNP	1241	3849	1	1225036	A
INS	1242	3850	1	1225144	G
SNP	1243	3851	1	1226345	C
SNP	1244	3852	1	1227493	A
SNP	1245	3853	1	1229702	C
INS	1246	5246	1	1230855	TGCCT	repeat_length=5	repeat_new_copies=5	repeat_ref_copies=4	repeat_seq=TGCCT
INS	1247	5247	1	1230984	CCCAACTTA	repeat_length=9	repeat_new_copies=2	repeat_ref_copies=1	repeat_seq=CCCAACTTA
DEL	1248	5137,5249	1	1234394	603
INS	1249	3861	1	1235412	A	repeat_length=1	repeat_new_copies=9	repeat_ref_copies=8	repeat_seq=A
SNP	1250	3862	1	1235520	T
SNP	1251	3863	1	1235898	C
SNP	1252	3864	1	1236023	C
SNP	1253	3865	1	1236713	C
SNP	1254	3866	1	1237166	G
SNP	1255	3867	1	1238791	G
SNP	1256	3868	1	1238855	C
SNP	1257	3869	1	1239031	T
SNP	1258	3870	1	1239132	G
SNP	1259	3871	1	1239419	A
DEL	1260	5138,5250	1	1239638	849
SNP	1261	3872	1	1244905	C
SNP	1262	3873	1	1246369	A
SNP	1263	3874	1	1250842	G
SNP	1264	3875	1	1251246	C
SNP	1265	3876	1	1254714	A
SNP	1266	3877	1	1255391	T
SNP	1267	3878	1	1255510	C
SNP	1268	3880	1	1257263	G
SNP	1269	3881	1	1257522	G
SNP	1270	3882	1	1261065	T
SNP	1271	3883	1	1261490	G
SNP	1272	3886	1	1263679	C
SNP	1273	3887	1	1266638	C
SNP	1274	3888	1	1267790	T
SNP	1275	3889	1	1267840	T
SNP	1276	3890	1	1268252	C
SNP	1277	3891	1	1268416	A
SNP	1278	3892	1	1268965	A
SNP	1279	3893	1	1269887	G
SNP	1280	3894	1	1270629	G
SNP	1281	3895	1	1272870	A
SNP	1282	3896	1	1274182	T
SNP	1283	3897	1	1274619	A
SNP	1284	3898	1	1274956	A
SNP	1285	3899	1	1276560	G
DEL	1286	5140,5253	1	1278403	10
SNP	1287	3900	1	1278687	C
SNP	1288	3901	1	1279797	G
DEL	1289	3902,3903	1	1283076	2	repeat_length=1	repeat_new_copies=3	repeat_ref_copies=5	repeat_seq=G
SNP	1290	3904	1	1285735	C
SNP	1291	3905	1	1286084	A
SNP	1292	3908	1	1288680	G
SNP	1293	3909	1	1288737	C
SNP	1294	3910	1	1289492	T
SNP	1295	3911	1	1290999	C
SNP	1296	3918	1	1292804	T
SNP	1297	3919	1	1292808	C
SNP	1298	3920	1	1292810	T
SNP	1299	3921	1	1292816	T
SNP	1300	3922	1	1292822	T
SNP	1301	3923	1	1292828	T
SNP	1302	3924	1	1292831	A
SNP	1303	3925	1	1292837	G
SNP	1304	3926	1	1292843	T
SNP	1305	3927	1	1292885	A
SNP	1306	3928	1	1292905	A
INS	1307	3929	1	1292952	T
SUB	1308	3930,3931	1	1292953	2	GA
SUB	1309	3932,3933	1	1292957	2	AA
SUB	1310	3934,3935,3936	1	1292961	2	TCA
SNP	1311	3937	1	1292969	T
SNP	1312	3938	1	1292997	C
SUB	1313	3939,3940	1	1293036	2	TA
SNP	1314	3941	1	1293039	C
SNP	1315	3942	1	1293049	T
SNP	1316	3943	1	1293085	C
SUB	1317	5142,5255	1	1293122	737	TACGTGCTTGAATTTATGCTTACAT
SNP	1318	3944	1	1293861	T
SNP	1319	3945	1	1293921	C
SNP	1320	3946	1	1293935	C
SNP	1321	3947	1	1293941	G
SNP	1322	3948	1	1293969	T
SUB	1323	3949,3950	1	1293975	2	TC
SNP	1324	3951	1	1293982	C
SNP	1325	3952	1	1293986	T
SNP	1326	3953	1	1293990	A
SUB	1327	3954,3955,3956	1	1293993	3	GAA
SNP	1328	3957	1	1294004	A
SNP	1329	3958	1	1294065	A
SNP	1330	3959	1	1295399	T
SNP	1331	3960	1	1298362	G
SNP	1332	3961	1	1298964	C
SNP	1333	3962	1	1299370	T
SNP	1334	3964	1	1299862	G
SNP	1335	3965	1	1300023	C
SNP	1336	3966	1	1301124	C
SNP	1337	3967	1	1301737	A
SNP	1338	3968	1	1302654	T
SNP	1339	3969	1	1303597	C
SNP	1340	3970	1	1304273	C
SNP	1341	3971	1	1304381	C
SNP	1342	3972	1	1306649	G
SNP	1343	3973	1	1308556	T
SNP	1344	3974	1	1308647	A
SNP	1345	3975	1	1309177	C
SNP	1346	3976	1	1310958	T
SNP	1347	3977	1	1311469	A
SNP	1348	3978	1	1311622	G
SNP	1349	3979	1	1312495	A
SNP	1350	3980	1	1312558	G
SNP	1351	3981	1	1313197	C
SNP	1352	3982	1	1314484	T
SNP	1353	3983	1	1314631	T
SNP	1354	3984	1	1315673	T
SNP	1355	3985	1	1315790	T
DEL	1356	5143,5256	1	1316220	4	repeat_length=4	repeat_new_copies=1	repeat_ref_copies=2	repeat_seq=TCTA
DEL	1357	3986	1	1318504	1
SNP	1358	3987	1	1319320	A
DEL	1359	3988	1	1319484	1	repeat_length=1	repeat_new_copies=5	repeat_ref_copies=6	repeat_seq=C
SNP	1360	3989	1	1320419	T
SNP	1361	3990	1	1322843	C
SNP	1362	3991	1	1322888	G
SNP	1363	3992	1	1324494	C
SNP	1364	3993	1	1325383	C
SNP	1365	3994	1	1328837	A
SNP	1366	3995	1	1328903	C
SNP	1367	3996	1	1329321	C
SNP	1368	3997	1	1330606	T
SNP	1369	4000	1	1331455	G
SNP	1370	4001	1	1332061	T
SNP	1371	4005	1	1333536	C
SNP	1372	4006	1	1334312	T
SNP	1373	4007	1	1334451	G
SNP	1374	4008	1	1336214	A
SNP	1375	4009	1	1336874	A
SNP	1376	4010	1	1337265	A
SNP	1377	4011	1	1338149	T
INS	1378	5257	1	1338528	TTT
INS	1379	4012	1	1339165	T
INS	1380	4013	1	1340120	C	repeat_length=1	repeat_new_copies=9	repeat_ref_copies=8	repeat_seq=C
SNP	1381	4014	1	1341761	C
SNP	1382	4015	1	1341808	T
SNP	1383	4016	1	1342447	C
SNP	1384	4017	1	1343208	T
SNP	1385	4018	1	1343451	A
DEL	1386	5145,5258	1	1343700	3	repeat_length=3	repeat_new_copies=2	repeat_ref_copies=3	repeat_seq=ATT
SNP	1387	4019	1	1344975	C
SNP	1388	4020	1	1346790	A
SNP	1389	4021	1	1346829	G
SNP	1390	4022	1	1346970	T
SNP	1391	4023	1	1347686	G
SNP	1392	4024	1	1348116	C
SNP	1393	4026	1	1350391	T
SNP	1394	4027	1	1351926	C
SNP	1395	4028	1	1352085	C
SNP	1396	4029	1	1354541	C
SNP	1397	4030	1	1354544	C
SNP	1398	4031	1	1355640	G
SNP	1399	4032	1	1356250	C
SNP	1400	4033	1	1358263	G
SNP	1401	4034	1	1358902	G
INS	1402	4035	1	1360672	T
SNP	1403	4036	1	1361427	T
SNP	1404	4037	1	1362061	A
SNP	1405	4038	1	1362154	T
SNP	1406	4039	1	1363240	C
SNP	1407	4040	1	1364285	G
SNP	1408	4041	1	1364940	T
SNP	1409	4042	1	1366707	T
SNP	1410	4043	1	1366794	T
SNP	1411	4044	1	1368529	T
SNP	1412	4047	1	1373736	G
SNP	1413	4048	1	1374121	T
SNP	1414	4049	1	1374633	G
SNP	1415	4050	1	1375157	T
SNP	1416	4051	1	1375245	T
SNP	1417	4052	1	1375892	A
SNP	1418	4053	1	1377602	T
SNP	1419	4054	1	1378089	C
SNP	1420	4056	1	1379230	A
SNP	1421	4057	1	1379985	G
SNP	1422	4058	1	1382661	G
SNP	1423	4059	1	1382739	G
SNP	1424	4060	1	1383403	C
SNP	1425	4061	1	1384590	T
SNP	1426	4062	1	1384636	G
SUB	1427	4063,4064	1	1385336	2	GT
SNP	1428	4065	1	1387390	A
SNP	1429	4066	1	1390021	A
SNP	1430	4067	1	1391190	G
SNP	1431	4069	1	1393407	A
SNP	1432	4070	1	1396169	G
DEL	1433	5146,5261	1	1397119	3
SNP	1434	4071	1	1398006	T
SNP	1435	4072	1	1398091	G
SNP	1436	4073	1	1400210	C
SNP	1437	4074	1	1400825	A
SNP	1438	4075	1	1401226	T
SNP	1439	4076	1	1401397	T
SNP	1440	4077	1	1401661	C
SNP	1441	4078	1	1403449	T
SNP	1442	4079	1	1404242	G
SUB	1443	5147,5262	1	1404507	947	CCGATCGGATTATGGTCATGAAAAAAGGCGTGATCGAACAAATCGATACGCCG
SNP	1444	4080	1	1406496	G
SNP	1445	4081	1	1406712	A
SNP	1446	4082	1	1407363	A
SNP	1447	4083	1	1408584	A
SNP	1448	4084	1	1409574	C
SNP	1449	4085	1	1410339	T
SNP	1450	4086	1	1410536	T
SNP	1451	4087	1	1410750	T
SNP	1452	4088	1	1411556	G
SNP	1453	4089	1	1412627	A
SNP	1454	4092	1	1419349	C
SNP	1455	4093	1	1421702	C
SNP	1456	4094	1	1422733	G
SNP	1457	4095	1	1423239	A
SNP	1458	4096	1	1423379	T
SNP	1459	4097	1	1427036	G
SNP	1460	4098	1	1427584	A
SNP	1461	4099	1	1428608	T
SNP	1462	4100	1	1429522	A
SNP	1463	4101	1	1431530	C
SNP	1464	4102	1	1438078	C
SNP	1465	4103	1	1438404	T
SNP	1466	4104	1	1438607	C
SNP	1467	4105	1	1439327	A
SNP	1468	4106	1	1442452	C
SNP	1469	4108	1	1443086	T
SNP	1470	4109	1	1443613	G
SNP	1471	4110	1	1443923	C
SNP	1472	4111	1	1444651	A
SNP	1473	4112	1	1445075	C
SNP	1474	4113	1	1446115	T
SNP	1475	4114	1	1446117	G
SNP	1476	4115	1	1446121	T
SNP	1477	4116	1	1446168	G
SNP	1478	4117	1	1446171	C
SNP	1479	4118	1	1449085	C
SNP	1480	4119	1	1450473	C
SNP	1481	4127	1	1453588	A
SNP	1482	4128	1	1455230	G
SNP	1483	4129	1	1455704	T
SNP	1484	4130	1	1456333	C
SNP	1485	4132	1	1457888	G
SNP	1486	4133	1	1459088	G
SNP	1487	4134	1	1460111	C
SNP	1488	4135	1	1460458	T
SNP	1489	4136	1	1461567	G
SNP	1490	4137	1	1463370	G
SNP	1491	4138	1	1465162	T
SNP	1492	4140	1	1466718	G
SNP	1493	4141	1	1466925	G
SNP	1494	4142	1	1470489	T
SNP	1495	4143	1	1470540	A
SNP	1496	4144	1	1470907	G
SNP	1497	4145	1	1471128	C
SNP	1498	4146	1	1472275	G
SNP	1499	4147	1	1475047	G
SNP	1500	4148	1	1475793	A
SNP	1501	4149	1	1476192	G
SNP	1502	4150	1	1476331	T
SNP	1503	4151	1	1476702	T
SNP	1504	4153	1	1477120	C
SNP	1505	4154	1	1478620	A
SNP	1506	4155	1	1478891	G
SNP	1507	4156	1	1481042	A
SNP	1508	4157	1	1481064	C
SNP	1509	4158	1	1481781	T
SNP	1510	4159	1	1485315	T
SNP	1511	4160	1	1489764	C
SNP	1512	4161	1	1490001	G
SNP	1513	4162	1	1490440	A
SNP	1514	4163	1	1492024	T
SNP	1515	4164	1	1496034	A
SNP	1516	4165	1	1496101	T
SNP	1517	4166	1	1496970	T
SNP	1518	4167	1	1497438	C
SNP	1519	4168	1	1497479	A
INS	1520	4169	1	1499969	T
SNP	1521	4170	1	1500745	T
SNP	1522	4171	1	1501806	T
SNP	1523	4172	1	1501821	G
SNP	1524	4173	1	1502196	C
SNP	1525	4174	1	1503760	C
SNP	1526	4176	1	1506196	G
SNP	1527	4177	1	1509777	C
SNP	1528	4178	1	1510027	A
SNP	1529	4179	1	1515772	C
SNP	1530	4180	1	1516427	A
SNP	1531	4181	1	1517345	G
SNP	1532	4182	1	1517595	T
SNP	1533	4183	1	1519819	C
SNP	1534	4184	1	1519998	A
SNP	1535	4185	1	1521160	A
SNP	1536	4186	1	1522995	C
SNP	1537	4187	1	1523083	G
SNP	1538	4188	1	1523226	C
SNP	1539	4189	1	1524022	C
SNP	1540	4190	1	1526067	A
SNP	1541	4191	1	1530103	G
SNP	1542	4192	1	1532154	A
SNP	1543	4193	1	1532474	A
SNP	1544	4194	1	1534103	A
SNP	1545	4197	1	1534595	A
SNP	1546	4198	1	1535249	T
SNP	1547	4199	1	1535350	G
SNP	1548	4200	1	1539616	T
SNP	1549	4201	1	1540155	T
SNP	1550	4202	1	1541716	T
SNP	1551	4203	1	1542960	C
SNP	1552	4204	1	1544051	G
SNP	1553	4207	1	1550513	T
SNP	1554	4208	1	1550873	T
SNP	1555	4209	1	1551659	T
SNP	1556	4212	1	1556275	G
SNP	1557	4213	1	1558004	G
SNP	1558	4214	1	1558636	G
SNP	1559	4215	1	1559800	G
SNP	1560	4217	1	1563521	G
SNP	1561	4218	1	1566510	A
SNP	1562	4219	1	1571595	T
SNP	1563	4220	1	1571634	A
SNP	1564	4221	1	1573785	A
SNP	1565	4222	1	1575231	A
SNP	1566	4223	1	1576484	G
SNP	1567	4224	1	1579677	C
SNP	1568	4225	1	1580968	C
SNP	1569	4226	1	1582399	A
SNP	1570	4227	1	1583036	A
SNP	1571	4228	1	1583824	A
SNP	1572	4229	1	1594349	C
SNP	1573	4230	1	1595589	C
SNP	1574	4231	1	1596273	G
SNP	1575	4232	1	1597765	A
SNP	1576	4233	1	1598522	C
SNP	1577	4234	1	1598997	A
SNP	1578	4235	1	1599872	C
SNP	1579	4236	1	1603409	A
SNP	1580	4237	1	1605718	G
SNP	1581	4238	1	1605957	G
SNP	1582	4239	1	1607006	A
DEL	1583	4240,4241	1	1607183	2	repeat_length=1	repeat_new_copies=5	repeat_ref_copies=7	repeat_seq=T
SNP	1584	4242	1	1608890	T
SNP	1585	4243	1	1614135	G
SNP	1586	4244	1	1614186	A
SNP	1587	4245	1	1614806	T
SNP	1588	4246	1	1615106	T
SNP	1589	4247	1	1616503	T
SNP	1590	4248	1	1617118	A
SNP	1591	4249	1	1617556	G
SNP	1592	4250	1	1617919	A
DEL	1593	5149,5267	1	1618801	1291
SNP	1594	4251	1	1624389	T
SNP	1595	4252	1	1625100	C
SNP	1596	4253	1	1625571	C
SNP	1597	4254	1	1626459	G
SNP	1598	4255	1	1626485	C
SNP	1599	4256	1	1627266	A
SNP	1600	4257	1	1628535	C
SNP	1601	4258	1	1628692	A
SNP	1602	4259	1	1629304	G
SNP	1603	4260	1	1629369	T
SNP	1604	4261	1	1632533	A
DEL	1605	4262	1	1633934	1	repeat_length=1	repeat_new_copies=4	repeat_ref_copies=5	repeat_seq=A
SNP	1606	4263	1	1636711	T
SNP	1607	4264	1	1638245	G
SNP	1608	4265	1	1638349	G
SNP	1609	4266	1	1640139	A
SNP	1610	4267	1	1640205	C
SNP	1611	4268	1	1640697	C
SNP	1612	4269	1	1640722	A
SNP	1613	4270	1	1642132	A
SNP	1614	4271	1	1642252	C
SNP	1615	4272	1	1642773	A
SNP	1616	4273	1	1643604	A
SNP	1617	4274	1	1645622	C
SNP	1618	4275	1	1646025	C
SNP	1619	4276	1	1647515	G
SNP	1620	4277	1	1648223	C
SNP	1621	4278	1	1648393	T
SNP	1622	4279	1	1648458	A
DEL	1623	4280	1	1650405	1	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=9	repeat_seq=T
SNP	1624	4281	1	1650585	C
SNP	1625	4282	1	1651737	T
SNP	1626	4283	1	1652688	A
SNP	1627	4284	1	1653825	C
SNP	1628	4285	1	1661600	A
SNP	1629	4288	1	1668054	G
SNP	1630	4293	1	1670779	G
SNP	1631	4294	1	1671075	G
SNP	1632	4295	1	1671647	T
SNP	1633	4296	1	1673286	C
SNP	1634	4297	1	1674354	C
SNP	1635	4298	1	1675446	G
SNP	1636	4299	1	1682659	G
SNP	1637	4300	1	1686523	G
SNP	1638	4301	1	1689061	T
SNP	1639	4302	1	1689698	C
SNP	1640	4303	1	1689911	G
SNP	1641	4304	1	1691179	A
SNP	1642	4305	1	1691935	T
SNP	1643	4306	1	1694422	G
SNP	1644	4307	1	1696984	C
SNP	1645	4308	1	1699737	G
SNP	1646	4309	1	1702094	A
SNP	1647	4310	1	1702394	A
SNP	1648	4311	1	1702402	A
SNP	1649	4312	1	1702588	T
SNP	1650	4313	1	1704259	G
SNP	1651	4314	1	1704316	G
SNP	1652	4315	1	1704417	C
SNP	1653	4316	1	1705261	C
SNP	1654	4317	1	1705967	C
SNP	1655	4318	1	1707167	G
SNP	1656	4319	1	1714600	G
SNP	1657	4320	1	1714603	A
SNP	1658	4321	1	1714656	C
SNP	1659	4322	1	1714695	G
SNP	1660	4323	1	1716635	C
SNP	1661	4324	1	1716935	T
SNP	1662	4325	1	1717353	G
SNP	1663	4326	1	1717369	A
SNP	1664	4327	1	1719358	G
SNP	1665	4328	1	1719506	A
SNP	1666	4329	1	1720361	A
SNP	1667	4330	1	1721094	T
SNP	1668	4331	1	1721712	A
SNP	1669	4332	1	1723014	C
SNP	1670	4333	1	1724040	G
SNP	1671	4334	1	1725259	G
SNP	1672	4335	1	1725307	T
SNP	1673	4337	1	1729026	C
SNP	1674	4338	1	1729083	G
SNP	1675	4339	1	1729137	T
SNP	1676	4340	1	1729510	G
SNP	1677	4341	1	1731304	C
SNP	1678	4342	1	1731648	A
SNP	1679	4343	1	1731859	G
SNP	1680	4344	1	1733248	T
SNP	1681	4345	1	1733481	C
SNP	1682	4346	1	1734875	A
SNP	1683	4347	1	1736074	C
SNP	1684	4348	1	1739465	G
SNP	1685	4349	1	1741795	C
SNP	1686	4350	1	1741833	T
SNP	1687	4351	1	1742888	A
SNP	1688	4352	1	1743886	T
SNP	1689	4353	1	1746922	G
SNP	1690	4354	1	1747830	A
SNP	1691	4355	1	1750895	A
SNP	1692	4356	1	1751191	T
SNP	1693	4357	1	1751357	T
SNP	1694	4358	1	1751489	G
SNP	1695	4359	1	1752342	G
SNP	1696	4360	1	1752738	A
SNP	1697	4361	1	1753018	C
SNP	1698	4362	1	1753498	G
SNP	1699	4363	1	1756218	T
SNP	1700	4364	1	1756221	G
SNP	1701	4365	1	1756982	G
SNP	1702	4367	1	1758465	G
SNP	1703	4368	1	1758768	T
SNP	1704	4369	1	1759376	G
SNP	1705	4370	1	1760208	T
SNP	1706	4371	1	1760922	G
SNP	1707	4372	1	1761428	T
SNP	1708	4373	1	1761540	A
SNP	1709	4375	1	1763110	A
SNP	1710	4376	1	1765857	A
SNP	1711	4379	1	1768861	G
SNP	1712	4380	1	1768902	C
SNP	1713	4381	1	1769866	G
SNP	1714	4382	1	1770378	G
SNP	1715	4383	1	1772364	G
DEL	1716	4384	1	1772429	1	repeat_length=1	repeat_new_copies=5	repeat_ref_copies=6	repeat_seq=T
SNP	1717	4385	1	1773836	G
INS	1718	4386	1	1776532	T
SNP	1719	4387	1	1777456	C
SNP	1720	4388	1	1777826	A
SNP	1721	4389	1	1778274	A
SNP	1722	4390	1	1779799	A
DEL	1723	4392	1	1781679	1	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=9	repeat_seq=A
INS	1724	5278	1	1782833	ATT
SNP	1725	4396	1	1785331	T
SNP	1726	4398	1	1785929	T
SNP	1727	4399	1	1787243	G
SNP	1728	4400	1	1787327	T
SNP	1729	4401	1	1787516	C
SNP	1730	4402	1	1789093	A
SNP	1731	4403	1	1789469	G
SNP	1732	4404	1	1790393	A
SNP	1733	4405	1	1791239	A
SNP	1734	4406	1	1791654	G
SNP	1735	4407	1	1792848	T
SNP	1736	4408	1	1793838	G
SNP	1737	4409	1	1794981	T
SNP	1738	4410	1	1796486	G
SNP	1739	4411	1	1796935	C
SNP	1740	4412	1	1797585	A
SNP	1741	4413	1	1798796	A
SNP	1742	4414	1	1799208	G
SNP	1743	4415	1	1800992	A
SNP	1744	4416	1	1801177	C
SNP	1745	4417	1	1801634	G
SNP	1746	4418	1	1803125	C
SNP	1747	4419	1	1803153	T
SNP	1748	4420	1	1803519	T
SNP	1749	4421	1	1803523	C
SNP	1750	4422	1	1804111	C
INS	1751	4423	1	1804737	T	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=7	repeat_seq=T
SNP	1752	4424	1	1804865	G
SNP	1753	4425	1	1807016	T
SNP	1754	4426	1	1807223	C
SNP	1755	4427	1	1808260	C
SNP	1756	4428	1	1809113	C
SNP	1757	4429	1	1811169	A
SNP	1758	4430	1	1812094	T
SNP	1759	4431	1	1813638	A
SNP	1760	4432	1	1814235	C
SNP	1761	4433	1	1814579	G
SNP	1762	4434	1	1814925	C
SNP	1763	4435	1	1814946	C
SNP	1764	4436	1	1814970	C
SNP	1765	4437	1	1814980	C
SNP	1766	4438	1	1815001	C
SNP	1767	4439	1	1815024	G
SNP	1768	4440	1	1815036	C
SNP	1769	4441	1	1815063	C
SUB	1770	4442,4443	1	1815069	2	GC
SNP	1771	4444	1	1815072	G
SNP	1772	4445	1	1815108	C
SNP	1773	4446	1	1815113	A
SNP	1774	4447	1	1815144	T
INS	1775	4448,4449	1	1815154	TC
SNP	1776	4450	1	1815158	T
DEL	1777	4451	1	1815167	1
SNP	1778	4452	1	1815303	A
SNP	1779	4453	1	1815363	T
SNP	1780	4454	1	1815369	A
SNP	1781	4455	1	1815384	A
SNP	1782	4456	1	1815441	T
SNP	1783	4457	1	1815453	G
SNP	1784	4458	1	1815480	T
SNP	1785	4459	1	1815483	T
SNP	1786	4460	1	1815489	C
SNP	1787	4461	1	1815528	G
SNP	1788	4462	1	1815687	T
SNP	1789	4463	1	1815717	G
SNP	1790	4464	1	1815732	T
SNP	1791	4465	1	1815738	T
SNP	1792	4466	1	1815768	T
SNP	1793	4467	1	1815810	T
SNP	1794	4468	1	1815840	C
SNP	1795	4469	1	1815945	C
SNP	1796	4470	1	1815948	T
SNP	1797	4471	1	1815984	G
SNP	1798	4472	1	1816011	C
SNP	1799	4473	1	1816091	T
SNP	1800	4474	1	1816148	A
SNP	1801	4475	1	1816228	A
SNP	1802	4476	1	1816256	G
SNP	1803	4477	1	1816274	T
SNP	1804	4478	1	1816284	T
SNP	1805	4479	1	1816307	C
SNP	1806	4480	1	1816322	C
SNP	1807	4481	1	1816328	C
SNP	1808	4482	1	1816340	G
SNP	1809	4483	1	1816361	C
SNP	1810	4484	1	1816385	C
SNP	1811	4485	1	1816409	A
SNP	1812	4486	1	1816432	C
SNP	1813	4487	1	1816535	C
SNP	1814	4488	1	1816556	C
SNP	1815	4489	1	1816562	C
SNP	1816	4490	1	1816601	G
SNP	1817	4491	1	1816605	G
SNP	1818	4492	1	1816634	T
SNP	1819	4493	1	1816673	C
SNP	1820	4494	1	1816676	G
SNP	1821	4495	1	1816685	T
SNP	1822	4496	1	1816694	T
SNP	1823	4497	1	1816701	T
SNP	1824	4498	1	1816712	G
SNP	1825	4499	1	1816721	T
SNP	1826	4500	1	1816775	G
SNP	1827	4501	1	1816784	A
SNP	1828	4502	1	1816802	G
SNP	1829	4503	1	1816865	T
SNP	1830	4504	1	1816880	T
SNP	1831	4505	1	1816904	A
SNP	1832	4506	1	1816940	G
SNP	1833	4507	1	1816964	T
SNP	1834	4508	1	1816967	C
SNP	1835	4509	1	1816997	G
SNP	1836	4510	1	1817033	T
SNP	1837	4511	1	1817048	T
INS	1838	4512	1	1817115	A
DEL	1839	4513	1	1817122	1
SNP	1840	4514	1	1817124	C
SNP	1841	4515	1	1817129	A
INS	1842	4516	1	1817136	A	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=A
SNP	1843	4517	1	1817145	G
SUB	1844	4518,4519	1	1817147	2	GA
SUB	1845	4520,4521	1	1817171	1	CG
SNP	1846	4522	1	1817173	G
SNP	1847	4523	1	1817177	A
SUB	1848	4526,4527	1	1817233	2	GG
SNP	1849	4534	1	1817263	A
SNP	1850	4535	1	1817266	A
SNP	1851	4536	1	1817293	T
SNP	1852	4537	1	1817296	C
SNP	1853	4538	1	1817308	T
SNP	1854	4539	1	1817320	C
SNP	1855	4540	1	1817349	C
SNP	1856	4541	1	1817356	T
SNP	1857	4542	1	1817358	A
SNP	1858	4543	1	1817429	G
SNP	1859	4544	1	1817447	A
SNP	1860	4545	1	1817492	A
SNP	1861	4546	1	1817498	C
SNP	1862	4547	1	1817549	T
SNP	1863	4548	1	1817615	T
SNP	1864	4549	1	1817621	G
SNP	1865	4550	1	1817624	G
SNP	1866	4551	1	1817651	A
SNP	1867	4552	1	1817663	G
SNP	1868	4553	1	1817666	G
SNP	1869	4554	1	1817714	G
SNP	1870	4555	1	1817795	C
SNP	1871	4556	1	1817804	C
SNP	1872	4557	1	1817816	C
SNP	1873	4558	1	1817825	G
SNP	1874	4559	1	1817870	C
SNP	1875	4560	1	1817981	A
SNP	1876	4561	1	1818014	T
SNP	1877	4562	1	1818047	T
SNP	1878	4563	1	1818062	C
SNP	1879	4564	1	1818122	T
SNP	1880	4565	1	1818136	A
SNP	1881	4566	1	1818140	C
SNP	1882	4567	1	1818179	T
SNP	1883	4568	1	1818242	C
SNP	1884	4569	1	1818263	C
SNP	1885	4570	1	1818293	C
SNP	1886	4571	1	1818374	T
SNP	1887	4572	1	1818493	C
SNP	1888	4573	1	1818548	G
SNP	1889	4574	1	1818563	G
SNP	1890	4575	1	1818668	C
SNP	1891	4576	1	1818721	T
SNP	1892	4577	1	1818828	C
SNP	1893	4578	1	1818860	T
SNP	1894	4579	1	1818868	G
SNP	1895	4580	1	1818892	T
SNP	1896	4581	1	1818937	G
SNP	1897	4582	1	1818988	G
SNP	1898	4583	1	1818996	C
SNP	1899	4584	1	1819009	G
SNP	1900	4585	1	1819083	G
SNP	1901	4586	1	1819098	A
SNP	1902	4587	1	1819123	G
SNP	1903	4588	1	1819140	G
SNP	1904	4589	1	1819165	A
SNP	1905	4590	1	1819207	G
SNP	1906	4591	1	1819245	A
SNP	1907	4592	1	1819311	G
SNP	1908	4593	1	1819321	T
SNP	1909	4594	1	1819333	T
SNP	1910	4595	1	1819354	T
SNP	1911	4596	1	1819369	A
SNP	1912	4597	1	1819414	A
SNP	1913	4598	1	1819435	T
SNP	1914	4599	1	1819496	C
SNP	1915	4600	1	1819564	A
SNP	1916	4601	1	1819624	T
SNP	1917	4602	1	1819627	G
SNP	1918	4603	1	1819687	G
SNP	1919	4604	1	1819780	A
SNP	1920	4605	1	1819807	A
SNP	1921	4606	1	1819809	G
SNP	1922	4607	1	1819825	C
SNP	1923	4608	1	1819840	C
SNP	1924	4609	1	1819843	G
SNP	1925	4610	1	1819859	G
SNP	1926	4611	1	1819876	C
SNP	1927	4612	1	1820101	A
SNP	1928	4613	1	1820104	G
SNP	1929	4614	1	1820185	T
SNP	1930	4615	1	1820254	G
SNP	1931	4616	1	1820266	T
SNP	1932	4617	1	1820277	G
SNP	1933	4618	1	1820299	G
SNP	1934	4619	1	1820311	C
SUB	1935	4620,4621	1	1820325	2	GC
SNP	1936	4622	1	1820329	C
SNP	1937	4623	1	1820337	C
SNP	1938	4624	1	1820377	C
SNP	1939	4625	1	1820409	A
SNP	1940	4626	1	1820413	C
SNP	1941	4627	1	1820440	C
SNP	1942	4628	1	1820518	A
SNP	1943	4629	1	1820539	A
SNP	1944	4630	1	1820578	C
SNP	1945	4631	1	1820583	C
SNP	1946	4632	1	1820650	C
SNP	1947	4633	1	1820695	C
SNP	1948	4634	1	1820710	G
SNP	1949	4635	1	1820735	A
SNP	1950	4636	1	1820755	T
SNP	1951	4637	1	1820761	A
SNP	1952	4638	1	1820766	T
SNP	1953	4639	1	1820778	T
SNP	1954	4640	1	1820788	T
SNP	1955	4641	1	1820804	C
SNP	1956	4642	1	1820875	A
SNP	1957	4643	1	1820926	A
SNP	1958	4644	1	1820982	A
SNP	1959	4645	1	1820987	T
SNP	1960	4646	1	1821135	C
SNP	1961	4647	1	1821237	C
SNP	1962	4648	1	1821270	A
SNP	1963	4649	1	1821279	T
SNP	1964	4650	1	1821287	G
SNP	1965	4651	1	1821458	T
SNP	1966	4652	1	1821462	C
SNP	1967	4653	1	1821465	C
SNP	1968	4654	1	1821471	C
SNP	1969	4655	1	1821484	T
SNP	1970	4656	1	1821552	T
SNP	1971	4657	1	1821564	C
SNP	1972	4658	1	1821573	G
SNP	1973	4659	1	1821633	G
SNP	1974	4660	1	1821642	C
SNP	1975	4661	1	1821687	A
SNP	1976	4662	1	1821693	A
SNP	1977	4663	1	1821698	T
SNP	1978	4664	1	1821702	G
SNP	1979	4665	1	1821705	A
SNP	1980	4666	1	1821711	C
SNP	1981	4667	1	1821714	G
SNP	1982	4668	1	1821735	T
SNP	1983	4669	1	1821738	T
SNP	1984	4670	1	1821756	G
SNP	1985	4671	1	1821780	C
SNP	1986	4672	1	1821783	C
SNP	1987	4673	1	1821786	T
SNP	1988	4674	1	1821792	A
SNP	1989	4675	1	1821807	A
SNP	1990	4676	1	1821816	T
SNP	1991	4677	1	1821828	A
SNP	1992	4678	1	1821849	G
SNP	1993	4679	1	1821852	A
SNP	1994	4680	1	1821855	G
SNP	1995	4681	1	1821861	G
SNP	1996	4682	1	1821870	A
SNP	1997	4683	1	1821873	T
SNP	1998	4684	1	1821876	G
SNP	1999	4685	1	1821879	G
SNP	2000	4686	1	1821882	G
SUB	2001	4687,4688	1	1821887	2	TT
SNP	2002	4689	1	1821891	T
SNP	2003	4690	1	1821897	G
SNP	2004	4691	1	1821900	C
SNP	2005	4692	1	1821903	A
SNP	2006	4693	1	1821909	A
SNP	2007	4694	1	1821918	T
SNP	2008	4695	1	1821924	T
SNP	2009	4696	1	1821927	G
SNP	2010	4697	1	1821930	G
SNP	2011	4698	1	1821936	A
SNP	2012	4699	1	1821956	C
SNP	2013	4700	1	1821963	A
SNP	2014	4701	1	1821994	C
SNP	2015	4702	1	1822008	A
SNP	2016	4703	1	1822010	G
SNP	2017	4704	1	1822014	C
SNP	2018	4705	1	1822019	A
SNP	2019	4706	1	1822021	T
SNP	2020	4707	1	1822023	A
SNP	2021	4708	1	1822522	C
SNP	2022	4709	1	1824468	A
DEL	2023	5280	1	1824929	3
SNP	2024	4711	1	1825146	A
SNP	2025	4712	1	1826758	G
SNP	2026	4713	1	1827043	A
SNP	2027	4714	1	1827153	T
SNP	2028	4715	1	1827226	A
SNP	2029	4716	1	1827440	C
SNP	2030	4717	1	1827609	A
INS	2031	4718	1	1827801	T	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=T
SNP	2032	4719	1	1828025	G
SNP	2033	4720	1	1828074	C
SNP	2034	4721	1	1828086	T
SNP	2035	4722	1	1828110	C
SNP	2036	4723	1	1828143	T
SNP	2037	4724	1	1828177	C
SNP	2038	4725	1	1828233	C
SNP	2039	4726	1	1828266	A
SNP	2040	4727	1	1828377	T
SNP	2041	4728	1	1828379	C
SNP	2042	4729	1	1828390	T
SNP	2043	4731	1	1828564	G
SNP	2044	4732	1	1828573	A
SNP	2045	4733	1	1828597	G
SNP	2046	4734	1	1828624	G
SNP	2047	4735	1	1828639	C
SNP	2048	4736	1	1828642	G
SNP	2049	4737	1	1828645	T
SNP	2050	4738	1	1828648	C
SNP	2051	4739	1	1828650	A
SNP	2052	4740	1	1828696	G
SNP	2053	4741	1	1828705	C
SNP	2054	4742	1	1828736	T
SNP	2055	4743	1	1828753	A
SNP	2056	4744	1	1828759	C
SNP	2057	4745	1	1828762	T
SNP	2058	4746	1	1828787	T
SNP	2059	4747	1	1828792	C
SNP	2060	4748	1	1828840	C
SNP	2061	4749	1	1828890	G
SNP	2062	4750	1	1828894	C
SNP	2063	4751	1	1828896	A
SNP	2064	4752	1	1828951	T
SNP	2065	4753	1	1828975	A
SNP	2066	4754	1	1829038	A
SNP	2067	4755	1	1829041	A
SNP	2068	4756	1	1829062	T
SNP	2069	4757	1	1829068	T
SNP	2070	4758	1	1829074	T
SNP	2071	4759	1	1829083	A
SNP	2072	4760	1	1829209	G
SNP	2073	4761	1	1829217	G
SNP	2074	4762	1	1829224	G
SNP	2075	4763	1	1829266	G
SNP	2076	4764	1	1829293	A
SNP	2077	4765	1	1829297	A
SNP	2078	4766	1	1829300	A
SNP	2079	4767	1	1829306	G
SNP	2080	4768	1	1829317	A
SNP	2081	4769	1	1829450	G
SNP	2082	4770	1	1829556	C
SNP	2083	4771	1	1829566	G
SUB	2084	4772,4773,4774	1	1829618	3	GCG
SNP	2085	4775	1	1829626	C
SUB	2086	4776,4777	1	1829636	2	GC
SNP	2087	4778	1	1829743	C
SNP	2088	4779	1	1829963	A
SNP	2089	4780	1	1829983	A
SNP	2090	4781	1	1830002	G
SNP	2091	4782	1	1830011	T
SNP	2092	4783	1	1830049	C
SNP	2093	4784	1	1830055	T
SNP	2094	4785	1	1830064	A
SNP	2095	4786	1	1830101	T
SNP	2096	4787	1	1830113	A
SNP	2097	4788	1	1830115	A
SUB	2098	4789,4790,4791	1	1830121	3	GCG
SUB	2099	4792,4793	1	1830127	2	AT
SNP	2100	4794	1	1830139	T
SNP	2101	4795	1	1830147	C
SNP	2102	4796	1	1830160	G
SNP	2103	4797	1	1830163	G
SNP	2104	4798	1	1830176	G
SNP	2105	4799	1	1830182	T
SUB	2106	4800,4801	1	1830225	2	TG
SNP	2107	4802	1	1830229	A
SNP	2108	4803	1	1830256	A
SNP	2109	4804	1	1830287	G
SNP	2110	4805	1	1830369	T
SNP	2111	4806	1	1830435	G
SNP	2112	4807	1	1830473	C
SNP	2113	4808	1	1830512	C
SNP	2114	4809	1	1830539	G
SUB	2115	4810,4811	1	1830572	2	TA
SNP	2116	4812	1	1830621	T
SNP	2117	4813	1	1830624	C
SNP	2118	4814	1	1830720	T
SNP	2119	4815	1	1830741	G
SNP	2120	4816	1	1830759	G
SNP	2121	4817	1	1830815	A
SNP	2122	4818	1	1830819	T
SNP	2123	4819	1	1830856	A
SNP	2124	4820	1	1830872	A
SNP	2125	4821	1	1830912	A
SNP	2126	4822	1	1830921	A
SNP	2127	4823	1	1831035	T
SNP	2128	4824	1	1831041	T
SNP	2129	4825	1	1831043	A
SNP	2130	4826	1	1831101	A
SNP	2131	4827	1	1831203	G
SNP	2132	4828	1	1831209	T
SNP	2133	4829	1	1831211	C
SNP	2134	4830	1	1831229	C
SNP	2135	4831	1	1831267	G
SNP	2136	4832	1	1831287	C
SNP	2137	4833	1	1831322	G
SNP	2138	4834	1	1831344	G
SNP	2139	4835	1	1831354	G
SNP	2140	4836	1	1831356	C
SNP	2141	4837	1	1831406	C
SNP	2142	4838	1	1831419	T
SNP	2143	4839	1	1831448	A
SNP	2144	4840	1	1831479	T
SNP	2145	4841	1	1831494	G
SNP	2146	4842	1	1831497	G
SNP	2147	4843	1	1831503	T
SNP	2148	4844	1	1831575	A
SNP	2149	4845	1	1831599	A
SNP	2150	4846	1	1831602	A
SNP	2151	4847	1	1831641	A
SNP	2152	4848	1	1831680	T
SNP	2153	4849	1	1831684	C
SNP	2154	4850	1	1831695	A
SNP	2155	4851	1	1831709	G
SNP	2156	4852	1	1831746	G
SNP	2157	4853	1	1831749	G
SNP	2158	4854	1	1831752	A
SNP	2159	4855	1	1831776	G
SNP	2160	4856	1	1831788	T
SNP	2161	4857	1	1831816	T
SUB	2162	4858,4859	1	1831851	2	CT
SNP	2163	4860	1	1831857	C
SNP	2164	4861	1	1831898	T
SNP	2165	4862	1	1831901	C
SNP	2166	4863	1	1831904	A
SNP	2167	4864	1	1831952	T
SNP	2168	4865	1	1831963	C
SNP	2169	4866	1	1831983	A
SNP	2170	4867	1	1831986	A
SNP	2171	4868	1	1831995	T
SNP	2172	4869	1	1832019	C
SNP	2173	4870	1	1832025	C
SNP	2174	4871	1	1832034	T
SNP	2175	4872	1	1832037	G
SNP	2176	4873	1	1832064	G
SNP	2177	4874	1	1832067	T
SNP	2178	4875	1	1832088	A
SNP	2179	4876	1	1832100	G
SNP	2180	4877	1	1832106	C
SNP	2181	4878	1	1832124	C
SNP	2182	4879	1	1832127	C
SNP	2183	4880	1	1832154	T
SNP	2184	4881	1	1832157	G
SNP	2185	4882	1	1832205	G
SNP	2186	4883	1	1832286	T
SNP	2187	4884	1	1832343	G
SNP	2188	4885	1	1832415	T
SNP	2189	4886	1	1832418	A
SNP	2190	4887	1	1832430	C
SNP	2191	4888	1	1832433	T
DEL	2192	4889	1	1832487	1
SNP	2193	4890	1	1832490	G
INS	2194	4891	1	1832494	T
SNP	2195	4892	1	1832501	A
SNP	2196	4893	1	1832508	T
SNP	2197	4894	1	1832565	G
SNP	2198	4895	1	1832606	A
SNP	2199	4896	1	1832610	A
SNP	2200	4897	1	1832616	A
SNP	2201	4898	1	1832634	G
SNP	2202	4899	1	1832643	T
SNP	2203	4900	1	1832665	G
SNP	2204	4901	1	1832682	A
SNP	2205	4902	1	1832688	A
DEL	2206	5154,5281	1	1833972	836
INS	2207	4903	1	1835662	T
SNP	2208	4904	1	1836127	G
SNP	2209	4905	1	1837167	C
SNP	2210	4906	1	1837815	A
SNP	2211	4907	1	1838466	A
SNP	2212	4908	1	1841525	A
SNP	2213	4909	1	1841714	T
SNP	2214	4910	1	1844157	C
SNP	2215	4911	1	1845331	T
SNP	2216	4912	1	1847116	C
SNP	2217	4913	1	1850791	A
SNP	2218	4914	1	1851128	A
SNP	2219	4915	1	1853734	C
SNP	2220	4916	1	1853784	C
SNP	2221	4917	1	1855258	G
SNP	2222	4918	1	1859504	G
SNP	2223	4919	1	1859651	G
SNP	2224	4920	1	1859717	G
SNP	2225	4921	1	1860590	G
SNP	2226	4922	1	1861181	G
SNP	2227	4923	1	1863469	C
SNP	2228	4924	1	1864954	T
SNP	2229	4925	1	1865616	G
SNP	2230	4926	1	1866450	G
SNP	2231	4927	1	1867327	G
SNP	2232	4928	1	1868324	G
SNP	2233	4929	1	1869046	G
SNP	2234	4930	1	1869462	A
SNP	2235	4931	1	1871071	C
SNP	2236	4933	1	1873674	G
SNP	2237	4934	1	1873964	T
INS	2238	5283	1	1875525	CGCCC	repeat_length=5	repeat_new_copies=3	repeat_ref_copies=2	repeat_seq=CGCCC
SNP	2239	4935	1	1875873	T
DEL	2240	5155,5284	1	1877180	1001
SNP	2241	4937	1	1880290	G
SNP	2242	4938	1	1880430	A
SNP	2243	4939	1	1880661	G
SNP	2244	4941	1	1881054	T
SNP	2245	4942	1	1882807	A
SNP	2246	4943	1	1883091	G
SNP	2247	4944	1	1888585	A
SNP	2248	4945	1	1889017	G
SNP	2249	4946	1	1889473	A
SNP	2250	4947	1	1889722	C
SNP	2251	4948	1	1890472	G
INS	2252	4949	1	1891015	T	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=7	repeat_seq=T
SNP	2253	4950	1	1891782	G
SNP	2254	4952	1	1896704	G
SNP	2255	4953	1	1897821	A
SNP	2256	4954	1	1898239	T
SNP	2257	4955	1	1899179	A
SNP	2258	4956	1	1900643	A
SNP	2259	4957	1	1901122	C
SNP	2260	4958	1	1904614	A
SNP	2261	4959	1	1904786	A
SNP	2262	4960	1	1905221	C
SNP	2263	4961	1	1906057	C
SNP	2264	4962	1	1906158	C
SNP	2265	4963	1	1906283	T
SNP	2266	4964	1	1907384	A
SNP	2267	4965	1	1908383	G
SNP	2268	4966	1	1908466	G
SNP	2269	4967	1	1909602	C
SNP	2270	4968	1	1909791	G
SNP	2271	4969	1	1910170	A
SNP	2272	4970	1	1911998	T
SNP	2273	4971	1	1914320	G
DEL	2274	5157,5285	1	1914653	4	repeat_length=4	repeat_new_copies=1	repeat_ref_copies=2	repeat_seq=ATCA
SNP	2275	4974	1	1918664	A
SNP	2276	4975	1	1921386	C
SNP	2277	4976	1	1921527	C
SNP	2278	4977	1	1922183	C
SNP	2279	4978	1	1922747	C
SNP	2280	4979	1	1924381	G
SNP	2281	4980	1	1924948	G
SNP	2282	4981	1	1926390	G
SNP	2283	4982	1	1927744	C
SNP	2284	4983	1	1928669	C
SNP	2285	4984	1	1928808	A
SNP	2286	4985	1	1928985	C
SNP	2287	4986	1	1929180	G
SNP	2288	4987	1	1929450	C
SNP	2289	4988	1	1930795	T
SNP	2290	4989	1	1931570	T
SNP	2291	4990	1	1931725	T
SNP	2292	4991	1	1934664	G
SNP	2293	4992	1	1935667	A
SNP	2294	4994	1	1938787	A
INS	2295	5287	1	1940871	GGTCGGTT
SNP	2296	4998	1	1942502	A
SNP	2297	4999	1	1942814	C
SNP	2298	5000	1	1948196	C
SNP	2299	5001	1	1951505	T
SNP	2300	5002	1	1951908	C
SNP	2301	5003	1	1954087	A
SNP	2302	5004	1	1954524	A
SNP	2303	5005	1	1957363	T
SNP	2304	5006	1	1958159	T
SNP	2305	5007	1	1958210	T
SNP	2306	5008	1	1958212	G
SNP	2307	5009	1	1958216	T
SNP	2308	5010	1	1958263	G
SNP	2309	5011	1	1958266	C
SNP	2310	5012	1	1960359	G
SNP	2311	5013	1	1960400	T
SNP	2312	5014	1	1984998	A
SNP	2313	5015	1	1986868	T
SNP	2314	5016	1	1987389	T
SNP	2315	5017	1	1991786	C
SNP	2316	5018	1	1991991	C
SNP	2317	5019	1	1992764	G
SNP	2318	5020	1	1995218	A
SNP	2319	5021	1	1996171	A
SNP	2320	5023	1	1999860	G
SNP	2321	5024	1	2002303	T
SNP	2322	5025	1	2007477	T
SNP	2323	5026	1	2007599	G
SNP	2324	5027	1	2007763	G
SNP	2325	5028	1	2009130	T
SNP	2326	5029	1	2009662	T
SNP	2327	5030	1	2011744	A
SNP	2328	5031	1	2014027	A
SNP	2329	5032	1	2016178	C
SNP	2330	5033	1	2017969	C
SNP	2331	5041	1	2024922	C
SNP	2332	5042	1	2025413	T
SNP	2333	5043	1	2025580	A
SNP	2334	5044	1	2026831	G
SNP	2335	5045	1	2028252	C
SNP	2336	5052	1	2031735	A
SNP	2337	5053	1	2033181	T
SNP	2338	5054	1	2034128	G
SNP	2339	5055	1	2034632	T
SNP	2340	5056	1	2034758	C
SNP	2341	5057	1	2036300	G
SNP	2342	5058	1	2038630	G
SNP	2343	5059	1	2040993	T
SNP	2344	5060	1	2041048	T
SNP	2345	5061	1	2041617	T
SNP	2346	5062	1	2045110	G
SNP	2347	5063	1	2047732	G
SNP	2348	5064	1	2049164	T
SNP	2349	5065	1	2051294	C
SNP	2350	5066	1	2053574	T
SNP	2351	5067	1	2054297	C
INS	2352	5068,5069	1	2054853	TT	repeat_length=1	repeat_new_copies=9	repeat_ref_copies=7	repeat_seq=T
SNP	2353	5070	1	2055665	T
SNP	2354	5071	1	2056953	G
SNP	2355	5072	1	2057672	G
SNP	2356	5073	1	2057820	A
INS	2357	5074	1	2060006	G
INS	2358	5291	1	2060614	CTCACCACG	repeat_length=9	repeat_new_copies=2	repeat_ref_copies=1	repeat_seq=CTCACCACG
SNP	2359	5075	1	2060893	A
SNP	2360	5076	1	2063045	C
SNP	2361	5077	1	2064329	G
SNP	2362	5078	1	2066374	T
INS	2363	5292	1	2067677	CAA	repeat_length=3	repeat_new_copies=3	repeat_ref_copies=2	repeat_seq=CAA
SNP	2364	5079	1	2067985	C
SNP	2365	5080	1	2068293	G
SNP	2366	5081	1	2068509	T
SNP	2367	5082	1	2071350	A
SNP	2368	5083	1	2073346	G
SNP	2369	5084	1	2075393	C
SNP	2370	5085	1	2076162	G
DEL	2371	5086	1	2076609	1
SNP	2372	5087	1	2078164	C
SNP	2373	5088	1	2079094	C
SNP	2374	5089	1	2080463	G
SNP	2375	5090	1	2082879	A
SNP	2376	5091	1	2083300	T
SNP	2377	5092	1	2088264	G
SNP	2378	5093	1	2089280	T
SNP	2379	5094	1	2089794	C
SNP	2380	5095	1	2092137	T
SNP	2381	5096	1	2097210	T
SNP	2382	5097	1	2097339	T
SNP	2383	5098	1	2097632	G
SNP	2384	5099	1	2098369	A
SNP	2385	5100	1	2098907	A
SNP	2386	5101	1	2099544	G
SNP	2387	5102	1	2100638	C
DEL	2388	5160	2	1	196
RA	2389	.	1	306	0	A	C	consensus_score=39.3	frequency=1	major_base=C	major_cov=11/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/8
RA	2390	.	1	329	0	G	A	consensus_score=52.5	frequency=1	major_base=A	major_cov=13/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/11
RA	2391	.	1	346	0	G	A	consensus_score=59.4	frequency=1	major_base=A	major_cov=13/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/15
RA	2392	.	1	349	0	C	G	consensus_score=63.3	frequency=1	major_base=G	major_cov=13/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/15
RA	2393	.	1	369	0	T	A	consensus_score=69.1	frequency=1	major_base=A	major_cov=14/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/18
RA	2394	.	1	394	0	C	T	consensus_score=83.6	frequency=1	major_base=T	major_cov=17/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/20
RA	2395	.	1	618	0	A	G	consensus_score=145.1	frequency=1	major_base=G	major_cov=23/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/26
RA	2396	.	1	808	0	A	G	consensus_score=58.3	frequency=1	major_base=G	major_cov=12/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/12
RA	2397	.	1	2761	0	C	T	consensus_score=285.8	frequency=1	major_base=T	major_cov=61/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/39
RA	2398	.	1	5932	0	C	A	bias_e_value=1724470	bias_p_value=0.820114	consensus_score=420.1	fisher_strand_p_value=0.463768	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=74/63	major_frequency=9.928e-01	minor_base=T	minor_cov=0/1	new_cov=74/63	polymorphism_frequency=9.928e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=74/64
RA	2399	.	1	6721	0	C	T	consensus_score=378.9	frequency=1	major_base=T	major_cov=55/76	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/76	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/76
RA	2400	.	1	7047	0	C	T	consensus_score=194.8	frequency=1	major_base=T	major_cov=32/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/37
RA	2401	.	1	8049	0	G	A	bias_e_value=0.000983639	bias_p_value=4.67794e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=170.0	fisher_strand_p_value=1.81804e-11	frequency=2.000e-01	ks_quality_p_value=1	major_base=G	major_cov=14/62	major_frequency=8.000e-01	minor_base=A	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.000e-01	polymorphism_score=11.9	prediction=polymorphism	ref_cov=14/62	total_cov=33/62
RA	2402	.	1	8912	0	C	T	consensus_score=135.6	frequency=1	major_base=T	major_cov=28/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/18
RA	2403	.	1	9086	0	G	A	consensus_score=98.6	frequency=1	major_base=A	major_cov=20/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/16
RA	2404	.	1	9796	0	C	T	consensus_score=332.7	frequency=1	major_base=T	major_cov=53/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/61
RA	2405	.	1	10057	0	A	G	consensus_score=413.9	frequency=1	major_base=G	major_cov=66/75	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/75	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/75
RA	2406	.	1	11010	0	G	A	consensus_score=237.8	frequency=1	major_base=A	major_cov=43/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/39
RA	2407	.	1	11252	0	G	A	bias_e_value=2102720	bias_p_value=1	consensus_score=453.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=93/71	major_frequency=9.939e-01	minor_base=C	minor_cov=1/0	new_cov=93/71	polymorphism_frequency=9.939e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=94/71
RA	2408	.	1	11382	0	G	T	bias_e_value=8584.29	bias_p_value=0.00408247	consensus_reject=FREQUENCY_CUTOFF	consensus_score=311.2	fisher_strand_p_value=0.000533797	frequency=7.670e-01	ks_quality_p_value=0.883166	major_base=T	major_cov=68/67	major_frequency=7.670e-01	minor_base=G	minor_cov=8/33	new_cov=68/67	polymorphism_frequency=7.670e-01	polymorphism_score=109.7	prediction=polymorphism	ref_cov=8/33	total_cov=76/100
RA	2409	.	1	11400	0	C	G	bias_e_value=19095.7	bias_p_value=0.00908142	consensus_reject=FREQUENCY_CUTOFF	consensus_score=327.8	fisher_strand_p_value=0.002764	frequency=2.660e-01	ks_quality_p_value=0.423998	major_base=C	major_cov=70/68	major_frequency=7.340e-01	minor_base=G	minor_cov=13/37	new_cov=13/37	polymorphism_frequency=2.660e-01	polymorphism_score=148.2	prediction=polymorphism	ref_cov=70/68	total_cov=83/105
RA	2410	.	1	11408	0	A	.	bias_e_value=108743	bias_p_value=0.0517153	consensus_reject=FREQUENCY_CUTOFF	consensus_score=383.0	fisher_strand_p_value=0.00906811	frequency=2.789e-01	ks_quality_p_value=1	major_base=A	major_cov=68/69	major_frequency=7.211e-01	minor_base=.	minor_cov=15/38	new_cov=15/38	polymorphism_frequency=2.789e-01	polymorphism_score=174.9	prediction=polymorphism	ref_cov=68/69	total_cov=83/107
RA	2411	.	1	11447	0	T	G	consensus_score=507.8	frequency=1	major_base=G	major_cov=74/110	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=74/110	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=74/110
RA	2412	.	1	13843	0	A	G	consensus_score=260.5	frequency=1	major_base=G	major_cov=36/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/51
RA	2413	.	1	15362	0	T	C	consensus_score=276.0	frequency=1	major_base=C	major_cov=44/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/47
RA	2414	.	1	15998	0	G	A	consensus_score=252.5	frequency=1	major_base=A	major_cov=36/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/53
RA	2415	.	1	16196	0	A	G	consensus_score=299.1	frequency=1	major_base=G	major_cov=47/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/53
RA	2416	.	1	18811	0	A	G	consensus_score=307.6	frequency=1	major_base=G	major_cov=56/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/44
RA	2417	.	1	19569	0	A	G	consensus_score=324.3	frequency=1	major_base=G	major_cov=53/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/59
RA	2418	.	1	20994	0	G	T	consensus_score=298.9	frequency=1	major_base=T	major_cov=58/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/43
RA	2419	.	1	23097	0	G	A	bias_e_value=3359.94	bias_p_value=0.0015979	consensus_score=190.1	fisher_strand_p_value=0.000164521	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=21/50	major_frequency=8.987e-01	minor_base=C	minor_cov=8/0	new_cov=21/50	polymorphism_frequency=8.987e-01	polymorphism_score=-2.8	prediction=consensus	ref_cov=0/0	total_cov=29/50
RA	2420	.	1	25260	0	G	A	bias_e_value=2.05146e-05	bias_p_value=9.75623e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=204.6	fisher_strand_p_value=3.27987e-13	frequency=2.414e-01	ks_quality_p_value=1	major_base=G	major_cov=65/23	major_frequency=7.586e-01	minor_base=A	minor_cov=0/28	new_cov=0/28	polymorphism_frequency=2.414e-01	polymorphism_score=20.3	prediction=polymorphism	ref_cov=65/23	total_cov=65/52
RA	2421	.	1	25334	0	G	T	bias_e_value=3.58249e-07	bias_p_value=1.70374e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=132.7	fisher_strand_p_value=5.02209e-15	frequency=3.750e-01	ks_quality_p_value=1	major_base=G	major_cov=14/46	major_frequency=6.250e-01	minor_base=T	minor_cov=36/0	new_cov=36/0	polymorphism_frequency=3.750e-01	polymorphism_score=34.2	prediction=polymorphism	ref_cov=14/46	total_cov=50/46
RA	2422	.	1	25372	0	G	A	bias_e_value=0.869573	bias_p_value=4.13547e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=151.0	fisher_strand_p_value=2.22064e-08	frequency=2.472e-01	ks_quality_p_value=1	major_base=G	major_cov=24/43	major_frequency=7.528e-01	minor_base=A	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.472e-01	polymorphism_score=12.6	prediction=polymorphism	ref_cov=24/43	total_cov=46/43
RA	2423	.	1	25808	0	C	T	consensus_score=258.2	frequency=1	major_base=T	major_cov=40/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/49
RA	2424	.	1	26071	0	G	A	consensus_score=332.6	frequency=1	major_base=A	major_cov=53/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/58
RA	2425	.	1	26748	0	C	A	consensus_score=328.0	frequency=1	major_base=A	major_cov=60/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/53
RA	2426	.	1	27596	0	T	C	consensus_score=372.9	frequency=1	major_base=C	major_cov=58/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/62
RA	2427	.	1	28111	0	G	T	consensus_score=285.8	frequency=1	major_base=T	major_cov=49/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/51
RA	2428	.	1	28386	0	C	T	consensus_score=295.9	frequency=1	major_base=T	major_cov=61/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/42
RA	2429	.	1	28545	0	A	G	consensus_score=301.5	frequency=1	major_base=G	major_cov=50/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/48
RA	2430	.	1	29188	0	C	A	bias_e_value=2102420	bias_p_value=0.999859	consensus_score=290.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.98324	major_base=A	major_cov=45/54	major_frequency=9.802e-01	minor_base=C	minor_cov=1/1	new_cov=45/54	polymorphism_frequency=9.802e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=1/1	total_cov=46/55
RA	2431	.	1	30873	0	T	A	bias_e_value=0.479427	bias_p_value=2.28003e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=172.1	fisher_strand_p_value=1.18434e-08	frequency=2.333e-01	ks_quality_p_value=1	major_base=T	major_cov=23/46	major_frequency=7.667e-01	minor_base=A	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.333e-01	polymorphism_score=12.0	prediction=polymorphism	ref_cov=23/46	total_cov=45/46
RA	2432	.	1	30893	0	G	A	bias_e_value=0.481419	bias_p_value=2.28951e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=171.7	fisher_strand_p_value=1.18953e-08	frequency=2.323e-01	ks_quality_p_value=1	major_base=G	major_cov=28/48	major_frequency=7.677e-01	minor_base=A	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.323e-01	polymorphism_score=11.6	prediction=polymorphism	ref_cov=28/48	total_cov=51/48
RA	2433	.	1	33593	0	A	G	consensus_score=271.8	frequency=1	major_base=G	major_cov=49/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/40
RA	2434	.	1	34163	0	G	A	consensus_score=390.1	frequency=1	major_base=A	major_cov=59/73	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/73	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/73
RA	2435	.	1	35284	0	G	T	consensus_score=430.0	frequency=1	major_base=T	major_cov=74/69	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=74/69	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=74/69
RA	2436	.	1	36862	0	T	C	consensus_score=428.0	frequency=1	major_base=C	major_cov=75/70	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=75/70	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=75/70
RA	2437	.	1	37905	0	C	T	consensus_score=332.3	frequency=1	major_base=T	major_cov=57/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/58
RA	2438	.	1	38237	0	C	T	bias_e_value=1768550	bias_p_value=0.841077	consensus_score=316.6	fisher_strand_p_value=0.495726	frequency=1	ks_quality_p_value=0.992805	major_base=T	major_cov=57/59	major_frequency=9.915e-01	minor_base=C	minor_cov=1/0	new_cov=57/59	polymorphism_frequency=9.915e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=58/59
RA	2439	.	1	38869	0	G	A	consensus_score=283.1	frequency=1	major_base=A	major_cov=54/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/43
RA	2440	.	1	42195	0	C	G	consensus_score=449.2	frequency=1	major_base=G	major_cov=77/70	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=77/70	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=77/70
RA	2441	.	1	42339	0	G	A	consensus_score=306.5	frequency=1	major_base=A	major_cov=59/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/42
RA	2442	.	1	42704	0	G	A	consensus_score=314.1	frequency=1	major_base=A	major_cov=32/72	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/72	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/72
RA	2443	.	1	43942	0	A	G	consensus_score=397.7	frequency=1	major_base=G	major_cov=64/77	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/77	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/77
RA	2444	.	1	47763	0	C	T	consensus_score=303.1	frequency=1	major_base=T	major_cov=52/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/48
RA	2445	.	1	48431	0	C	T	consensus_score=444.9	frequency=1	major_base=T	major_cov=74/78	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=74/78	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=74/78
RA	2446	.	1	50600	0	C	T	consensus_score=303.1	frequency=1	major_base=T	major_cov=56/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/49
RA	2447	.	1	55276	0	T	C	consensus_score=304.6	frequency=1	major_base=C	major_cov=60/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/44
RA	2448	.	1	57971	0	G	A	consensus_score=352.5	frequency=1	major_base=A	major_cov=71/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=71/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=71/52
RA	2449	.	1	59705	0	G	A	consensus_score=294.8	frequency=1	major_base=A	major_cov=58/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/44
RA	2450	.	1	60125	0	A	G	consensus_score=259.1	frequency=1	major_base=G	major_cov=51/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/39
RA	2451	.	1	60533	0	C	T	consensus_score=243.4	frequency=1	major_base=T	major_cov=46/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/38
RA	2452	.	1	60615	0	A	G	consensus_score=306.8	frequency=1	major_base=G	major_cov=52/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/49
RA	2453	.	1	60922	0	T	C	consensus_score=272.4	frequency=1	major_base=C	major_cov=43/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/51
RA	2454	.	1	60945	0	A	G	consensus_score=306.9	frequency=1	major_base=G	major_cov=43/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/60
RA	2455	.	1	62914	0	T	C	consensus_score=335.0	frequency=1	major_base=C	major_cov=42/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/66
RA	2456	.	1	63062	0	C	G	consensus_score=275.6	frequency=1	major_base=G	major_cov=47/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/43
RA	2457	.	1	63992	0	T	C	consensus_score=124.6	frequency=1	major_base=C	major_cov=17/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/25
RA	2458	.	1	64985	0	G	T	consensus_score=411.3	frequency=1	major_base=T	major_cov=65/70	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/70	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/70
RA	2459	.	1	67593	0	A	C	consensus_score=106.8	frequency=1	major_base=C	major_cov=18/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/21
RA	2460	.	1	68395	0	A	G	consensus_score=388.7	frequency=1	major_base=G	major_cov=69/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=69/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=69/64
RA	2461	.	1	76526	0	T	G	consensus_score=327.4	frequency=1	major_base=G	major_cov=64/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/44
RA	2462	.	1	78305	0	G	A	consensus_score=482.8	frequency=1	major_base=A	major_cov=76/88	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=76/88	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=76/88
RA	2463	.	1	80194	0	T	C	consensus_score=328.9	frequency=1	major_base=C	major_cov=49/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/65
RA	2464	.	1	80622	0	T	C	consensus_score=277.9	frequency=1	major_base=C	major_cov=33/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/62
RA	2465	.	1	80767	0	C	A	consensus_score=226.4	frequency=1	major_base=A	major_cov=12/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/65
RA	2466	.	1	81544	0	G	A	consensus_score=323.1	frequency=1	major_base=A	major_cov=65/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/47
RA	2467	.	1	82384	0	G	A	consensus_score=245.7	frequency=1	major_base=A	major_cov=46/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/39
RA	2468	.	1	82774	0	T	C	consensus_score=383.8	frequency=1	major_base=C	major_cov=66/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/65
RA	2469	.	1	83376	0	A	C	consensus_score=421.0	frequency=1	major_base=C	major_cov=68/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=68/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/67
RA	2470	.	1	84041	0	T	C	bias_e_value=2767.42	bias_p_value=0.00131611	consensus_score=173.4	fisher_strand_p_value=0.000132559	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=20/50	major_frequency=8.974e-01	minor_base=T	minor_cov=8/0	new_cov=20/50	polymorphism_frequency=8.974e-01	polymorphism_score=-2.7	prediction=consensus	ref_cov=8/0	total_cov=30/50
RA	2471	.	1	84843	0	G	T	bias_e_value=9.98157e-06	bias_p_value=4.74698e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=220.7	fisher_strand_p_value=1.55685e-13	frequency=2.095e-01	ks_quality_p_value=1	major_base=G	major_cov=69/14	major_frequency=7.905e-01	minor_base=T	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.095e-01	polymorphism_score=16.2	prediction=polymorphism	ref_cov=69/14	total_cov=69/36
RA	2472	.	1	86064	0	G	A	consensus_score=341.6	frequency=1	major_base=A	major_cov=48/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/65
RA	2473	.	1	86691	0	T	G	consensus_score=290.2	frequency=1	major_base=G	major_cov=45/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/56
RA	2474	.	1	88947	0	A	G	consensus_score=225.7	frequency=1	major_base=G	major_cov=53/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/26
RA	2475	.	1	92721	0	A	G	consensus_score=261.7	frequency=1	major_base=G	major_cov=43/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/47
RA	2476	.	1	95833	0	C	T	consensus_score=245.2	frequency=1	major_base=T	major_cov=39/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/47
RA	2477	.	1	97932	0	G	A	bias_e_value=1060010	bias_p_value=0.504111	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=4.5	fisher_strand_p_value=0.24715	frequency=5.103e-01	ks_quality_p_value=0.765291	major_base=A	major_cov=39/60	major_frequency=5.103e-01	minor_base=G	minor_cov=46/49	new_cov=39/60	polymorphism_frequency=5.103e-01	polymorphism_score=216.4	prediction=polymorphism	ref_cov=46/49	total_cov=85/109
RA	2478	.	1	97953	0	G	A	bias_e_value=244501	bias_p_value=0.116279	consensus_reject=FREQUENCY_CUTOFF	consensus_score=65.4	fisher_strand_p_value=0.0275798	frequency=4.516e-01	ks_quality_p_value=0.897201	major_base=G	major_cov=57/45	major_frequency=5.484e-01	minor_base=A	minor_cov=33/51	new_cov=33/51	polymorphism_frequency=4.516e-01	polymorphism_score=189.1	prediction=polymorphism	ref_cov=57/45	total_cov=90/96
RA	2479	.	1	98046	0	C	T	bias_e_value=1147240	bias_p_value=0.545596	consensus_reject=FREQUENCY_CUTOFF	consensus_score=223.6	fisher_strand_p_value=0.223054	frequency=2.366e-01	ks_quality_p_value=0.964231	major_base=C	major_cov=55/45	major_frequency=7.634e-01	minor_base=T	minor_cov=13/18	new_cov=13/18	polymorphism_frequency=2.366e-01	polymorphism_score=54.4	prediction=polymorphism	ref_cov=55/45	total_cov=68/63
RA	2480	.	1	98107	0	C	A	consensus_score=16.5	frequency=1	major_base=A	major_cov=3/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/6
RA	2481	.	1	98112	0	G	A	consensus_score=13.4	frequency=1	major_base=A	major_cov=3/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/5
RA	2482	.	1	98113	0	T	C	consensus_score=13.6	frequency=1	major_base=C	major_cov=3/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/5
RA	2483	.	1	98297	0	T	C	consensus_score=680.3	frequency=1	major_base=C	major_cov=124/119	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=124/119	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=124/119
RA	2484	.	1	98327	0	A	G	consensus_score=831.5	frequency=1	major_base=G	major_cov=154/134	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=154/134	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=154/134
RA	2485	.	1	98333	0	T	C	consensus_score=896.1	frequency=1	major_base=C	major_cov=159/149	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=159/149	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=159/149
RA	2486	.	1	98359	0	C	T	consensus_score=1049.7	frequency=1	major_base=T	major_cov=193/174	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=193/174	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=193/174
RA	2487	.	1	98588	0	G	A	bias_e_value=1719960	bias_p_value=0.817968	consensus_reject=FREQUENCY_CUTOFF	consensus_score=262.8	fisher_strand_p_value=0.504429	frequency=7.460e-01	ks_quality_p_value=0.913877	major_base=A	major_cov=71/70	major_frequency=7.460e-01	minor_base=G	minor_cov=21/27	new_cov=71/70	polymorphism_frequency=7.460e-01	polymorphism_score=98.3	prediction=polymorphism	ref_cov=21/27	total_cov=92/98
RA	2488	.	1	99780	0	G	A	consensus_score=347.9	frequency=1	major_base=A	major_cov=64/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/50
RA	2489	.	1	100706	0	G	A	consensus_score=319.8	frequency=1	major_base=A	major_cov=55/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/55
RA	2490	.	1	104698	0	C	T	consensus_score=297.3	frequency=1	major_base=T	major_cov=42/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/56
RA	2491	.	1	105305	0	G	A	consensus_score=332.5	frequency=1	major_base=A	major_cov=61/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/51
RA	2492	.	1	106387	0	C	T	consensus_score=377.3	frequency=1	major_base=T	major_cov=58/72	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/72	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/72
RA	2493	.	1	107054	0	C	T	consensus_score=437.9	frequency=1	major_base=T	major_cov=85/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=85/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=85/63
RA	2494	.	1	107603	0	T	C	consensus_score=332.1	frequency=1	major_base=C	major_cov=46/69	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/69	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/69
RA	2495	.	1	111947	0	T	C	bias_e_value=1302320	bias_p_value=0.619351	consensus_score=374.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.26683	major_base=C	major_cov=75/50	major_frequency=9.921e-01	minor_base=.	minor_cov=1/0	new_cov=75/50	polymorphism_frequency=9.921e-01	polymorphism_score=-3.3	prediction=consensus	ref_cov=0/0	total_cov=76/50
RA	2496	.	1	113210	0	T	C	consensus_score=347.4	frequency=1	major_base=C	major_cov=54/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/61
RA	2497	.	1	114209	0	G	T	consensus_score=249.9	frequency=1	major_base=T	major_cov=43/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/42
RA	2498	.	1	114412	0	C	A	consensus_score=324.5	frequency=1	major_base=A	major_cov=54/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/53
RA	2499	.	1	114747	0	A	C	bias_e_value=1.9253e-05	bias_p_value=9.15624e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=150.6	fisher_strand_p_value=3.07138e-13	frequency=2.841e-01	ks_quality_p_value=1	major_base=A	major_cov=12/51	major_frequency=7.159e-01	minor_base=C	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.841e-01	polymorphism_score=10.7	prediction=polymorphism	ref_cov=12/51	total_cov=37/52
RA	2500	.	1	114765	0	T	A	bias_e_value=0.000158573	bias_p_value=7.54133e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=141.8	fisher_strand_p_value=2.72971e-12	frequency=2.892e-01	ks_quality_p_value=1	major_base=T	major_cov=12/47	major_frequency=7.108e-01	minor_base=A	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.892e-01	polymorphism_score=17.3	prediction=polymorphism	ref_cov=12/47	total_cov=36/53
RA	2501	.	1	114773	0	G	A	bias_e_value=6.53702	bias_p_value=3.10884e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=133.1	fisher_strand_p_value=1.88602e-07	frequency=2.045e-01	ks_quality_p_value=1	major_base=G	major_cov=19/51	major_frequency=7.955e-01	minor_base=A	minor_cov=17/1	new_cov=17/1	polymorphism_frequency=2.045e-01	polymorphism_score=10.7	prediction=polymorphism	ref_cov=19/51	total_cov=37/52
RA	2502	.	1	114810	0	A	C	bias_e_value=1.97951	bias_p_value=9.41405e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=147.6	fisher_strand_p_value=5.30297e-08	frequency=2.674e-01	ks_quality_p_value=1	major_base=A	major_cov=43/20	major_frequency=7.326e-01	minor_base=C	minor_cov=1/22	new_cov=1/22	polymorphism_frequency=2.674e-01	polymorphism_score=11.6	prediction=polymorphism	ref_cov=43/20	total_cov=44/42
RA	2503	.	1	114884	0	A	C	bias_e_value=3.98739e-07	bias_p_value=1.8963e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=131.7	fisher_strand_p_value=5.60793e-15	frequency=3.407e-01	ks_quality_p_value=1	major_base=A	major_cov=51/9	major_frequency=6.593e-01	minor_base=C	minor_cov=1/30	new_cov=1/30	polymorphism_frequency=3.407e-01	polymorphism_score=19.6	prediction=polymorphism	ref_cov=51/9	total_cov=53/39
RA	2504	.	1	114928	0	A	G	consensus_score=249.7	frequency=1	major_base=G	major_cov=49/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/38
RA	2505	.	1	115677	0	T	A	bias_e_value=0.0905912	bias_p_value=4.30829e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=236.6	fisher_strand_p_value=2.05109e-09	frequency=2.000e-01	ks_quality_p_value=1	major_base=T	major_cov=66/26	major_frequency=8.000e-01	minor_base=A	minor_cov=1/22	new_cov=1/22	polymorphism_frequency=2.000e-01	polymorphism_score=17.5	prediction=polymorphism	ref_cov=66/26	total_cov=68/49
RA	2506	.	1	118652	0	C	T	consensus_score=324.1	frequency=1	major_base=T	major_cov=59/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/53
RA	2507	.	1	120813	0	A	G	consensus_score=287.0	frequency=1	major_base=G	major_cov=57/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/41
RA	2508	.	1	123652	0	A	C	consensus_score=444.3	frequency=1	major_base=C	major_cov=73/74	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=73/74	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=73/74
RA	2509	.	1	125255	0	G	T	consensus_score=245.1	frequency=1	major_base=T	major_cov=39/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/47
RA	2510	.	1	129177	0	A	G	bias_e_value=0.177125	bias_p_value=8.42359e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=127.6	fisher_strand_p_value=4.1495e-09	frequency=2.778e-01	ks_quality_p_value=1	major_base=A	major_cov=23/42	major_frequency=7.222e-01	minor_base=G	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.778e-01	polymorphism_score=15.4	prediction=polymorphism	ref_cov=23/42	total_cov=48/42
RA	2511	.	1	129870	0	A	G	consensus_score=367.0	frequency=1	major_base=G	major_cov=64/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/61
RA	2512	.	1	137661	0	A	C	consensus_score=251.6	frequency=1	major_base=C	major_cov=43/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/42
RA	2513	.	1	138039	0	C	T	consensus_score=190.5	frequency=1	major_base=T	major_cov=29/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/37
RA	2514	.	1	138201	0	C	T	consensus_score=301.1	frequency=1	major_base=T	major_cov=64/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/40
RA	2515	.	1	141194	0	A	C	bias_e_value=2102720	bias_p_value=1	consensus_score=210.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=29/44	major_frequency=9.865e-01	minor_base=A	minor_cov=0/1	new_cov=29/44	polymorphism_frequency=9.865e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=29/45
RA	2516	.	1	142150	0	G	A	bias_e_value=1664720	bias_p_value=0.791699	consensus_score=226.5	fisher_strand_p_value=0.428571	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=44/32	major_frequency=9.870e-01	minor_base=G	minor_cov=0/1	new_cov=44/32	polymorphism_frequency=9.870e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=44/33
RA	2517	.	1	142714	0	C	T	consensus_score=181.2	frequency=1	major_base=T	major_cov=31/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/32
RA	2518	.	1	142829	0	T	C	consensus_score=201.2	frequency=1	major_base=C	major_cov=28/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/38
RA	2519	.	1	144429	0	C	T	consensus_score=315.1	frequency=1	major_base=T	major_cov=50/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/59
RA	2520	.	1	144622	0	A	G	consensus_score=153.0	frequency=1	major_base=G	major_cov=20/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/33
RA	2521	.	1	146322	0	T	G	consensus_score=181.3	frequency=1	major_base=G	major_cov=30/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/29
RA	2522	.	1	147971	0	A	G	consensus_score=173.5	frequency=1	major_base=G	major_cov=36/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/25
RA	2523	.	1	148388	0	C	T	consensus_score=240.0	frequency=1	major_base=T	major_cov=28/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/55
RA	2524	.	1	149327	0	C	T	consensus_score=178.1	frequency=1	major_base=T	major_cov=24/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/35
RA	2525	.	1	151565	0	C	A	bias_e_value=1.96718e-06	bias_p_value=9.35543e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=219.0	fisher_strand_p_value=2.90824e-14	frequency=2.602e-01	ks_quality_p_value=1	major_base=C	major_cov=25/66	major_frequency=7.398e-01	minor_base=A	minor_cov=32/0	new_cov=32/0	polymorphism_frequency=2.602e-01	polymorphism_score=24.9	prediction=polymorphism	ref_cov=25/66	total_cov=57/66
RA	2526	.	1	151589	0	T	A	bias_e_value=0.000576185	bias_p_value=2.74019e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=236.6	fisher_strand_p_value=1.04242e-11	frequency=2.203e-01	ks_quality_p_value=1	major_base=T	major_cov=27/65	major_frequency=7.797e-01	minor_base=A	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=2.203e-01	polymorphism_score=14.9	prediction=polymorphism	ref_cov=27/65	total_cov=53/65
RA	2527	.	1	151872	0	A	G	bias_e_value=1.7429	bias_p_value=8.28881e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=100.0	fisher_strand_p_value=4.63391e-08	frequency=2.459e-01	ks_quality_p_value=1	major_base=A	major_cov=10/36	major_frequency=7.541e-01	minor_base=G	minor_cov=15/0	new_cov=15/0	polymorphism_frequency=2.459e-01	polymorphism_score=10.2	prediction=polymorphism	ref_cov=10/36	total_cov=26/36
RA	2528	.	1	151887	0	C	G	bias_e_value=0.0804394	bias_p_value=3.82549e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=110.9	fisher_strand_p_value=1.81048e-09	frequency=2.857e-01	ks_quality_p_value=1	major_base=C	major_cov=9/36	major_frequency=7.143e-01	minor_base=G	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.857e-01	polymorphism_score=12.0	prediction=polymorphism	ref_cov=9/36	total_cov=27/36
RA	2529	.	1	152115	0	G	A	consensus_score=309.0	frequency=1	major_base=A	major_cov=60/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/46
RA	2530	.	1	153782	0	G	A	consensus_score=334.0	frequency=1	major_base=A	major_cov=53/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/61
RA	2531	.	1	154427	0	A	G	consensus_score=348.6	frequency=1	major_base=G	major_cov=61/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/58
RA	2532	.	1	154860	0	G	A	consensus_score=326.3	frequency=1	major_base=A	major_cov=52/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/57
RA	2533	.	1	159435	0	A	C	consensus_score=204.3	frequency=1	major_base=C	major_cov=42/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/28
RA	2534	.	1	159816	0	C	A	consensus_score=224.0	frequency=1	major_base=A	major_cov=49/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/29
RA	2535	.	1	161875	0	A	G	bias_e_value=1762500	bias_p_value=0.838201	consensus_score=248.2	fisher_strand_p_value=0.488636	frequency=1	ks_quality_p_value=0.998956	major_base=G	major_cov=42/45	major_frequency=9.886e-01	minor_base=.	minor_cov=1/0	new_cov=42/45	polymorphism_frequency=9.886e-01	polymorphism_score=-4.6	prediction=consensus	ref_cov=0/0	total_cov=43/45
RA	2536	.	1	163398	0	A	G	consensus_score=244.4	frequency=1	major_base=G	major_cov=48/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/36
RA	2537	.	1	165030	0	C	T	consensus_score=231.7	frequency=1	major_base=T	major_cov=43/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/37
RA	2538	.	1	165579	0	C	T	consensus_score=291.5	frequency=1	major_base=T	major_cov=48/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/53
RA	2539	.	1	166580	0	T	C	consensus_score=352.0	frequency=1	major_base=C	major_cov=66/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/54
RA	2540	.	1	167119	0	T	C	consensus_score=227.7	frequency=1	major_base=C	major_cov=48/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/29
RA	2541	.	1	167120	0	A	G	consensus_score=219.4	frequency=1	major_base=G	major_cov=48/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/29
RA	2542	.	1	167633	0	C	T	consensus_score=213.1	frequency=1	major_base=T	major_cov=40/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/31
RA	2543	.	1	168058	0	T	A	bias_e_value=6.67283e-05	bias_p_value=3.17343e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=156.3	fisher_strand_p_value=1.11253e-12	frequency=2.603e-01	ks_quality_p_value=1	major_base=T	major_cov=48/6	major_frequency=7.397e-01	minor_base=A	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=2.603e-01	polymorphism_score=17.8	prediction=polymorphism	ref_cov=48/6	total_cov=48/25
RA	2544	.	1	168104	0	A	T	bias_e_value=1.85932e-05	bias_p_value=8.84243e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=155.8	fisher_strand_p_value=2.96253e-13	frequency=2.727e-01	ks_quality_p_value=1	major_base=A	major_cov=49/7	major_frequency=7.273e-01	minor_base=T	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=2.727e-01	polymorphism_score=11.3	prediction=polymorphism	ref_cov=49/7	total_cov=49/28
RA	2545	.	1	168933	0	A	G	bias_e_value=1699280	bias_p_value=0.808136	consensus_score=186.7	fisher_strand_p_value=0.449275	frequency=1	ks_quality_p_value=0.998296	major_base=G	major_cov=30/38	major_frequency=9.855e-01	minor_base=T	minor_cov=1/0	new_cov=30/38	polymorphism_frequency=9.855e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/38
RA	2546	.	1	170461	0	G	A	consensus_score=268.8	frequency=1	major_base=A	major_cov=44/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/48
RA	2547	.	1	172842	0	G	A	consensus_score=285.9	frequency=1	major_base=A	major_cov=50/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/44
RA	2548	.	1	173517	0	A	G	consensus_score=293.0	frequency=1	major_base=G	major_cov=59/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/42
RA	2549	.	1	174457	0	C	G	consensus_score=274.7	frequency=1	major_base=G	major_cov=52/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/43
RA	2550	.	1	176031	0	C	T	consensus_score=286.3	frequency=1	major_base=T	major_cov=44/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/51
RA	2551	.	1	177048	0	T	C	consensus_score=283.6	frequency=1	major_base=C	major_cov=38/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/61
RA	2552	.	1	177770	0	C	A	consensus_score=417.0	frequency=1	major_base=A	major_cov=76/68	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=76/68	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=76/68
RA	2553	.	1	178320	0	C	A	consensus_score=320.4	frequency=1	major_base=A	major_cov=62/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/45
RA	2554	.	1	179528	0	T	C	consensus_score=333.4	frequency=1	major_base=C	major_cov=73/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=73/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=73/39
RA	2555	.	1	180093	0	T	C	consensus_score=339.1	frequency=1	major_base=C	major_cov=51/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/60
RA	2556	.	1	180392	0	G	A	consensus_score=319.3	frequency=1	major_base=A	major_cov=46/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/63
RA	2557	.	1	182655	0	A	G	consensus_score=396.8	frequency=1	major_base=G	major_cov=69/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=69/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=69/60
RA	2558	.	1	182849	0	T	C	consensus_score=309.0	frequency=1	major_base=C	major_cov=69/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=69/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=69/38
RA	2559	.	1	183917	0	T	C	consensus_score=338.4	frequency=1	major_base=C	major_cov=51/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/59
RA	2560	.	1	185667	0	T	C	consensus_score=227.2	frequency=1	major_base=C	major_cov=30/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/49
RA	2561	.	1	185758	0	C	T	consensus_score=272.8	frequency=1	major_base=T	major_cov=50/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/44
RA	2562	.	1	186985	0	A	.	consensus_score=416.2	frequency=1	major_base=.	major_cov=42/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/55
RA	2563	.	1	187769	0	T	G	consensus_score=347.8	frequency=1	major_base=G	major_cov=57/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/62
RA	2564	.	1	187833	0	A	G	consensus_score=287.5	frequency=1	major_base=G	major_cov=40/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/59
RA	2565	.	1	187987	0	G	A	bias_e_value=2102720	bias_p_value=1	consensus_score=339.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999855	major_base=A	major_cov=58/59	major_frequency=9.915e-01	minor_base=C	minor_cov=1/0	new_cov=58/59	polymorphism_frequency=9.915e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/59
RA	2566	.	1	190695	0	G	A	consensus_score=340.6	frequency=1	major_base=A	major_cov=49/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/65
RA	2567	.	1	193336	0	A	G	consensus_score=319.3	frequency=1	major_base=G	major_cov=46/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/61
RA	2568	.	1	195706	0	A	G	consensus_score=277.4	frequency=1	major_base=G	major_cov=50/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/45
RA	2569	.	1	197642	0	C	T	consensus_score=222.4	frequency=1	major_base=T	major_cov=29/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/49
RA	2570	.	1	198860	0	A	G	consensus_score=373.2	frequency=1	major_base=G	major_cov=72/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=72/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=72/55
RA	2571	.	1	199033	0	T	C	consensus_score=313.4	frequency=1	major_base=C	major_cov=57/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/45
RA	2572	.	1	200539	0	T	C	consensus_score=397.1	frequency=1	major_base=C	major_cov=67/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=67/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/65
RA	2573	.	1	202392	0	A	C	consensus_score=240.5	frequency=1	major_base=C	major_cov=40/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/39
RA	2574	.	1	204975	0	A	G	consensus_score=305.2	frequency=1	major_base=G	major_cov=52/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/53
RA	2575	.	1	205109	0	A	G	consensus_score=243.9	frequency=1	major_base=G	major_cov=45/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/39
RA	2576	.	1	206737	0	C	A	consensus_score=269.7	frequency=1	major_base=A	major_cov=30/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/61
RA	2577	.	1	210471	0	G	A	consensus_score=302.9	frequency=1	major_base=A	major_cov=45/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/59
RA	2578	.	1	215996	0	G	A	consensus_score=269.9	frequency=1	major_base=A	major_cov=50/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/42
RA	2579	.	1	216194	0	T	C	consensus_score=331.5	frequency=1	major_base=C	major_cov=54/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/57
RA	2580	.	1	217587	0	A	G	consensus_score=287.8	frequency=1	major_base=G	major_cov=51/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/47
RA	2581	.	1	217740	0	G	A	consensus_score=233.2	frequency=1	major_base=A	major_cov=48/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/35
RA	2582	.	1	218649	0	G	T	consensus_score=361.3	frequency=1	major_base=T	major_cov=51/69	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/69	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/69
RA	2583	.	1	219680	0	C	T	consensus_score=320.5	frequency=1	major_base=T	major_cov=50/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/57
RA	2584	.	1	220454	0	T	.	consensus_score=31.6	deleted=1	frequency=1	major_base=.	major_cov=4/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/11
RA	2585	.	1	220455	0	T	.	consensus_score=31.6	deleted=1	frequency=1	major_base=.	major_cov=4/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/11
RA	2586	.	1	220487	0	A	G	consensus_score=110.7	frequency=1	major_base=G	major_cov=11/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/33
RA	2587	.	1	220495	0	G	A	consensus_score=118.8	frequency=1	major_base=A	major_cov=13/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/35
RA	2588	.	1	220501	0	T	C	consensus_score=126.4	frequency=1	major_base=C	major_cov=13/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/35
RA	2589	.	1	220504	0	T	.	consensus_score=169.2	frequency=1	major_base=.	major_cov=13/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/35
RA	2590	.	1	221682	0	A	G	consensus_score=260.0	frequency=1	major_base=G	major_cov=48/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/42
RA	2591	.	1	226057	0	G	A	consensus_score=281.4	frequency=1	major_base=A	major_cov=47/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/51
RA	2592	.	1	226794	0	C	T	consensus_score=261.6	frequency=1	major_base=T	major_cov=47/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/42
RA	2593	.	1	227032	0	G	A	consensus_score=266.8	frequency=1	major_base=A	major_cov=48/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/44
RA	2594	.	1	228184	0	T	C	bias_e_value=1.01457e-10	bias_p_value=4.82505e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=181.8	fisher_strand_p_value=1.14026e-18	frequency=2.816e-01	ks_quality_p_value=1	major_base=T	major_cov=8/66	major_frequency=7.184e-01	minor_base=C	minor_cov=29/0	new_cov=29/0	polymorphism_frequency=2.816e-01	polymorphism_score=14.8	prediction=polymorphism	ref_cov=8/66	total_cov=37/66
RA	2595	.	1	230951	0	A	G	consensus_score=268.6	frequency=1	major_base=G	major_cov=46/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/46
RA	2596	.	1	231173	0	A	G	consensus_score=352.9	frequency=1	major_base=G	major_cov=65/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/56
RA	2597	.	1	238980	0	G	A	consensus_score=271.9	frequency=1	major_base=A	major_cov=50/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/41
RA	2598	.	1	239193	0	A	C	consensus_score=279.2	frequency=1	major_base=C	major_cov=47/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/50
RA	2599	.	1	242282	0	T	G	consensus_score=276.7	frequency=1	major_base=G	major_cov=47/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/51
RA	2600	.	1	245338	0	A	C	bias_e_value=5.66966e-07	bias_p_value=2.69634e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=244.8	fisher_strand_p_value=8.06038e-15	frequency=3.252e-01	ks_quality_p_value=1	major_base=A	major_cov=57/26	major_frequency=6.748e-01	minor_base=C	minor_cov=0/40	new_cov=0/40	polymorphism_frequency=3.252e-01	polymorphism_score=11.5	prediction=polymorphism	ref_cov=57/26	total_cov=57/66
RA	2601	.	1	245401	0	A	C	bias_e_value=6.09316e-06	bias_p_value=2.89775e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=224.1	fisher_strand_p_value=9.34725e-14	frequency=2.683e-01	ks_quality_p_value=1	major_base=A	major_cov=63/27	major_frequency=7.317e-01	minor_base=C	minor_cov=0/33	new_cov=0/33	polymorphism_frequency=2.683e-01	polymorphism_score=18.0	prediction=polymorphism	ref_cov=63/27	total_cov=63/60
RA	2602	.	1	245686	0	C	T	consensus_score=259.3	frequency=1	major_base=T	major_cov=50/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/40
RA	2603	.	1	246564	0	A	C	bias_e_value=1810170	bias_p_value=0.860872	consensus_score=253.9	fisher_strand_p_value=0.521272	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=37/57	major_frequency=9.792e-01	minor_base=A	minor_cov=0/2	new_cov=37/57	polymorphism_frequency=9.792e-01	polymorphism_score=-5.8	prediction=consensus	ref_cov=0/2	total_cov=37/59
RA	2604	.	1	247109	0	A	G	consensus_score=326.3	frequency=1	major_base=G	major_cov=65/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/42
RA	2605	.	1	247361	0	C	T	consensus_score=306.3	frequency=1	major_base=T	major_cov=51/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/56
RA	2606	.	1	248701	0	C	T	consensus_score=313.4	frequency=1	major_base=T	major_cov=52/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/55
RA	2607	.	1	249718	0	C	T	consensus_score=342.3	frequency=1	major_base=T	major_cov=49/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/64
RA	2608	.	1	250747	0	A	G	consensus_score=267.4	frequency=1	major_base=G	major_cov=46/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/42
RA	2609	.	1	251235	0	C	A	bias_e_value=0.0736744	bias_p_value=3.50377e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=184.0	fisher_strand_p_value=1.65102e-09	frequency=2.174e-01	ks_quality_p_value=1	major_base=C	major_cov=20/52	major_frequency=7.826e-01	minor_base=A	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.174e-01	polymorphism_score=13.1	prediction=polymorphism	ref_cov=20/52	total_cov=40/52
RA	2610	.	1	251260	0	T	A	bias_e_value=0.000729485	bias_p_value=3.46924e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=195.7	fisher_strand_p_value=1.33219e-11	frequency=2.418e-01	ks_quality_p_value=1	major_base=T	major_cov=15/54	major_frequency=7.582e-01	minor_base=A	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.418e-01	polymorphism_score=11.0	prediction=polymorphism	ref_cov=15/54	total_cov=37/54
RA	2611	.	1	251271	0	G	A	bias_e_value=5.83161e-12	bias_p_value=2.77337e-18	consensus_reject=FREQUENCY_CUTOFF	consensus_score=102.7	fisher_strand_p_value=6.13055e-20	frequency=3.483e-01	ks_quality_p_value=1	major_base=G	major_cov=4/54	major_frequency=6.517e-01	minor_base=A	minor_cov=31/0	new_cov=31/0	polymorphism_frequency=3.483e-01	polymorphism_score=31.5	prediction=polymorphism	ref_cov=4/54	total_cov=36/54
RA	2612	.	1	251293	0	T	A	bias_e_value=8.18814e-05	bias_p_value=3.89407e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=211.3	fisher_strand_p_value=1.3754e-12	frequency=2.371e-01	ks_quality_p_value=1	major_base=T	major_cov=15/59	major_frequency=7.629e-01	minor_base=A	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.371e-01	polymorphism_score=10.8	prediction=polymorphism	ref_cov=15/59	total_cov=38/59
RA	2613	.	1	251726	0	G	A	consensus_score=221.4	frequency=1	major_base=A	major_cov=34/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/41
RA	2614	.	1	252938	0	T	C	consensus_score=248.9	frequency=1	major_base=C	major_cov=35/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/48
RA	2615	.	1	253142	0	A	G	consensus_score=286.2	frequency=1	major_base=G	major_cov=53/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/46
RA	2616	.	1	253223	0	C	A	consensus_score=280.2	frequency=1	major_base=A	major_cov=48/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/47
RA	2617	.	1	254627	0	T	G	consensus_score=197.4	frequency=1	major_base=G	major_cov=33/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/35
RA	2618	.	1	254687	0	T	.	consensus_score=175.3	frequency=1	major_base=.	major_cov=21/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/21
RA	2619	.	1	255273	0	G	C	consensus_score=252.9	frequency=1	major_base=C	major_cov=46/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/38
RA	2620	.	1	256354	0	G	T	consensus_score=331.5	frequency=1	major_base=T	major_cov=54/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/58
RA	2621	.	1	258241	0	G	T	consensus_score=329.7	frequency=1	major_base=T	major_cov=56/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/58
RA	2622	.	1	258678	0	A	G	bias_e_value=2102720	bias_p_value=1	consensus_score=354.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=57/57	major_frequency=9.913e-01	minor_base=T	minor_cov=0/1	new_cov=57/57	polymorphism_frequency=9.913e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/58
RA	2623	.	1	259368	0	G	A	bias_e_value=0.0118421	bias_p_value=5.6318e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=155.6	fisher_strand_p_value=2.43419e-10	frequency=2.198e-01	ks_quality_p_value=1	major_base=G	major_cov=54/17	major_frequency=7.802e-01	minor_base=A	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.198e-01	polymorphism_score=10.4	prediction=polymorphism	ref_cov=54/17	total_cov=54/37
RA	2624	.	1	259419	0	T	C	bias_e_value=1.33766e-08	bias_p_value=6.36156e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=129.5	fisher_strand_p_value=1.70516e-16	frequency=2.874e-01	ks_quality_p_value=1	major_base=T	major_cov=56/6	major_frequency=7.126e-01	minor_base=C	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.874e-01	polymorphism_score=20.0	prediction=polymorphism	ref_cov=56/6	total_cov=56/31
RA	2625	.	1	260610	0	A	G	consensus_score=309.5	frequency=1	major_base=G	major_cov=63/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/44
RA	2626	.	1	267077	0	C	T	consensus_score=367.6	frequency=1	major_base=T	major_cov=60/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/62
RA	2627	.	1	267562	0	G	A	consensus_score=284.1	frequency=1	major_base=A	major_cov=42/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/55
RA	2628	.	1	268833	0	T	C	consensus_score=363.1	frequency=1	major_base=C	major_cov=72/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=72/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=72/54
RA	2629	.	1	269154	0	C	A	consensus_score=350.1	frequency=1	major_base=A	major_cov=54/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/62
RA	2630	.	1	271785	0	G	A	consensus_score=287.6	frequency=1	major_base=A	major_cov=30/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/66
RA	2631	.	1	272853	0	A	G	consensus_score=426.6	frequency=1	major_base=G	major_cov=77/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=77/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=77/67
RA	2632	.	1	273803	0	T	G	consensus_score=308.6	frequency=1	major_base=G	major_cov=53/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/49
RA	2633	.	1	276160	0	G	T	consensus_score=370.4	frequency=1	major_base=T	major_cov=62/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/66
RA	2634	.	1	276260	0	G	A	consensus_score=340.0	frequency=1	major_base=A	major_cov=55/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/58
RA	2635	.	1	276735	0	A	G	consensus_score=367.4	frequency=1	major_base=G	major_cov=56/70	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/70	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/70
RA	2636	.	1	277326	0	A	G	consensus_score=449.0	frequency=1	major_base=G	major_cov=78/78	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=78/78	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=78/78
RA	2637	.	1	278555	0	A	G	consensus_score=344.1	frequency=1	major_base=G	major_cov=57/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/54
RA	2638	.	1	278805	0	G	T	consensus_score=330.2	frequency=1	major_base=T	major_cov=56/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/58
RA	2639	.	1	279161	0	A	G	bias_e_value=346731	bias_p_value=0.164896	consensus_reject=FREQUENCY_CUTOFF	consensus_score=53.3	fisher_strand_p_value=0.0388069	frequency=6.786e-01	ks_quality_p_value=1	major_base=G	major_cov=11/27	major_frequency=6.786e-01	minor_base=A	minor_cov=11/7	new_cov=11/27	polymorphism_frequency=6.786e-01	polymorphism_score=32.9	prediction=polymorphism	ref_cov=11/7	total_cov=22/34
RA	2640	.	1	279218	0	T	G	consensus_score=58.3	frequency=1	major_base=G	major_cov=6/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/17
RA	2641	.	1	284808	0	C	T	bias_e_value=2102720	bias_p_value=0.999999	consensus_score=97.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.9985	major_base=T	major_cov=18/18	major_frequency=9.730e-01	minor_base=A	minor_cov=1/0	new_cov=18/18	polymorphism_frequency=9.730e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=0/0	total_cov=19/18
RA	2642	.	1	286151	1	.	T	bias_e_value=2102720	bias_p_value=0.999999	consensus_score=305.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998603	major_base=T	major_cov=55/51	major_frequency=9.815e-01	minor_base=.	minor_cov=1/1	new_cov=55/51	polymorphism_frequency=9.815e-01	polymorphism_score=-0.8	prediction=consensus	ref_cov=1/1	total_cov=56/53
RA	2643	.	1	286160	0	C	A	consensus_score=340.2	frequency=1	major_base=A	major_cov=55/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/57
RA	2644	.	1	286551	0	C	T	consensus_score=410.3	frequency=1	major_base=T	major_cov=68/68	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=68/68	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/68
RA	2645	.	1	290423	0	T	G	consensus_score=240.7	frequency=1	major_base=G	major_cov=42/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/41
RA	2646	.	1	291285	0	A	G	consensus_score=186.5	frequency=1	major_base=G	major_cov=44/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/27
RA	2647	.	1	296529	0	A	.	bias_e_value=2102700	bias_p_value=0.999992	consensus_score=564.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.996028	major_base=.	major_cov=67/67	major_frequency=9.926e-01	minor_base=A	minor_cov=1/0	new_cov=67/67	polymorphism_frequency=9.926e-01	polymorphism_score=-3.5	prediction=consensus	ref_cov=1/0	total_cov=68/67
RA	2648	.	1	296818	0	A	T	bias_e_value=2099680	bias_p_value=0.998553	consensus_score=203.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.94668	major_base=T	major_cov=29/43	major_frequency=9.863e-01	minor_base=A	minor_cov=0/1	new_cov=29/43	polymorphism_frequency=9.863e-01	polymorphism_score=-3.5	prediction=consensus	ref_cov=0/1	total_cov=29/44
RA	2649	.	1	296819	0	C	A	bias_e_value=2100560	bias_p_value=0.998972	consensus_score=204.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.955001	major_base=A	major_cov=29/43	major_frequency=9.863e-01	minor_base=C	minor_cov=0/1	new_cov=29/43	polymorphism_frequency=9.863e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=0/1	total_cov=29/44
RA	2650	.	1	296821	0	T	C	consensus_score=210.0	frequency=1	major_base=C	major_cov=29/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/44
RA	2651	.	1	296823	0	G	A	consensus_score=210.6	frequency=1	major_base=A	major_cov=29/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/44
RA	2652	.	1	296824	0	T	A	consensus_score=211.1	frequency=1	major_base=A	major_cov=29/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/44
RA	2653	.	1	296838	0	T	A	consensus_score=192.2	frequency=1	major_base=A	major_cov=26/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/41
RA	2654	.	1	296839	0	A	T	consensus_score=190.3	frequency=1	major_base=T	major_cov=26/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/41
RA	2655	.	1	296844	0	A	T	consensus_score=188.2	frequency=1	major_base=T	major_cov=26/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/41
RA	2656	.	1	296862	0	A	G	consensus_score=180.2	frequency=1	major_base=G	major_cov=23/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/37
RA	2657	.	1	296870	0	C	T	consensus_score=142.2	frequency=1	major_base=T	major_cov=17/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/33
RA	2658	.	1	296872	0	C	T	consensus_score=141.5	frequency=1	major_base=T	major_cov=17/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/33
RA	2659	.	1	296879	0	T	.	consensus_score=159.7	frequency=1	major_base=.	major_cov=13/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/25
RA	2660	.	1	296887	0	T	A	consensus_score=109.1	frequency=1	major_base=A	major_cov=13/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/25
RA	2661	.	1	296904	0	A	C	consensus_score=37.3	deleted=1	frequency=1	major_base=C	major_cov=6/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/8
RA	2662	.	1	296905	0	A	C	consensus_score=37.5	deleted=1	frequency=1	major_base=C	major_cov=6/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/8
RA	2663	.	1	296906	0	G	A	consensus_score=35.6	deleted=1	frequency=1	major_base=A	major_cov=6/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/8
RA	2664	.	1	296909	0	A	C	consensus_score=37.8	deleted=1	frequency=1	major_base=C	major_cov=6/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/8
RA	2665	.	1	296913	0	C	T	consensus_score=35.5	deleted=1	frequency=1	major_base=T	major_cov=6/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/8
RA	2666	.	1	296914	0	C	A	consensus_score=36.0	deleted=1	frequency=1	major_base=A	major_cov=6/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/8
RA	2667	.	1	296918	0	G	T	consensus_score=36.3	deleted=1	frequency=1	major_base=T	major_cov=6/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/8
RA	2668	.	1	296939	0	A	T	consensus_score=24.2	deleted=1	frequency=1	major_base=T	major_cov=4/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/6
RA	2669	.	1	297992	0	C	T	consensus_score=320.6	frequency=1	major_base=T	major_cov=39/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/67
RA	2670	.	1	300884	0	T	C	consensus_score=382.7	frequency=1	major_base=C	major_cov=57/70	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/70	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/70
RA	2671	.	1	300957	0	G	A	consensus_score=328.3	frequency=1	major_base=A	major_cov=53/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/62
RA	2672	.	1	301028	1	.	A	bias_e_value=2101450	bias_p_value=0.999397	consensus_score=348.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.965478	major_base=A	major_cov=53/66	major_frequency=9.597e-01	minor_base=.	minor_cov=2/3	new_cov=53/66	polymorphism_frequency=9.597e-01	polymorphism_score=7.0	prediction=consensus	ref_cov=2/3	total_cov=55/69
RA	2673	.	1	301215	0	G	A	consensus_score=441.5	frequency=1	major_base=A	major_cov=77/71	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=77/71	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=77/71
RA	2674	.	1	302873	0	T	C	consensus_score=413.2	frequency=1	major_base=C	major_cov=73/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=73/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=73/66
RA	2675	.	1	303098	0	G	A	consensus_score=307.3	frequency=1	major_base=A	major_cov=55/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/59
RA	2676	.	1	303212	0	G	C	bias_e_value=344624	bias_p_value=0.163894	consensus_score=330.4	fisher_strand_p_value=0.0384988	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=50/66	major_frequency=9.667e-01	minor_base=G	minor_cov=4/0	new_cov=50/66	polymorphism_frequency=9.667e-01	polymorphism_score=-1.9	prediction=consensus	ref_cov=4/0	total_cov=54/66
RA	2677	.	1	304218	0	A	G	consensus_score=464.1	frequency=1	major_base=G	major_cov=86/79	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=86/79	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=86/79
RA	2678	.	1	304317	0	G	A	bias_e_value=145737	bias_p_value=0.0693087	consensus_score=477.8	fisher_strand_p_value=0.012966	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=93/84	major_frequency=9.672e-01	minor_base=C	minor_cov=0/6	new_cov=93/84	polymorphism_frequency=9.672e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=93/91
RA	2679	.	1	304379	0	T	C	consensus_score=522.5	frequency=1	major_base=C	major_cov=90/87	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=90/87	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=90/87
RA	2680	.	1	306725	0	G	A	consensus_score=439.1	frequency=1	major_base=A	major_cov=65/82	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/82	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/82
RA	2681	.	1	307321	0	A	G	consensus_score=431.8	frequency=1	major_base=G	major_cov=67/74	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=67/74	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/74
RA	2682	.	1	308255	0	T	C	bias_e_value=1689170	bias_p_value=0.803328	consensus_score=315.5	fisher_strand_p_value=0.442623	frequency=1	ks_quality_p_value=0.999865	major_base=C	major_cov=53/68	major_frequency=9.918e-01	minor_base=T	minor_cov=1/0	new_cov=53/68	polymorphism_frequency=9.918e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=55/68
RA	2683	.	1	310700	0	G	A	consensus_score=328.9	frequency=1	major_base=A	major_cov=51/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/62
RA	2684	.	1	312506	0	A	G	consensus_score=394.0	frequency=1	major_base=G	major_cov=66/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/64
RA	2685	.	1	313416	0	T	C	consensus_score=293.3	frequency=1	major_base=C	major_cov=42/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/54
RA	2686	.	1	313671	0	G	A	consensus_score=185.1	frequency=1	major_base=A	major_cov=35/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/30
RA	2687	.	1	313826	0	T	C	consensus_score=322.8	frequency=1	major_base=C	major_cov=64/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/44
RA	2688	.	1	314246	0	G	A	consensus_score=214.0	frequency=1	major_base=A	major_cov=32/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/42
RA	2689	.	1	318023	0	C	T	consensus_score=299.0	frequency=1	major_base=T	major_cov=70/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=70/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=70/32
RA	2690	.	1	318073	0	T	C	consensus_score=347.9	frequency=1	major_base=C	major_cov=73/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=73/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=73/45
RA	2691	.	1	318137	0	G	A	bias_e_value=272411	bias_p_value=0.129552	consensus_score=291.4	fisher_strand_p_value=0.0284025	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=52/52	major_frequency=9.455e-01	minor_base=C	minor_cov=0/6	new_cov=52/52	polymorphism_frequency=9.455e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/58
RA	2692	.	1	318855	0	A	G	consensus_score=315.8	frequency=1	major_base=G	major_cov=47/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/61
RA	2693	.	1	319214	0	T	C	consensus_score=229.3	frequency=1	major_base=C	major_cov=34/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/41
RA	2694	.	1	319278	0	G	T	consensus_score=201.6	frequency=1	major_base=T	major_cov=29/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/39
RA	2695	.	1	319521	0	A	T	bias_e_value=0.0431303	bias_p_value=2.05117e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=184.6	fisher_strand_p_value=9.41619e-10	frequency=2.317e-01	ks_quality_p_value=1	major_base=A	major_cov=15/48	major_frequency=7.683e-01	minor_base=T	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.317e-01	polymorphism_score=15.3	prediction=polymorphism	ref_cov=15/48	total_cov=34/48
RA	2696	.	1	320412	0	G	T	consensus_score=209.4	frequency=1	major_base=T	major_cov=32/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/38
RA	2697	.	1	320600	0	A	G	consensus_score=166.9	frequency=1	major_base=G	major_cov=30/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/25
RA	2698	.	1	320614	0	A	G	consensus_score=172.2	frequency=1	major_base=G	major_cov=31/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/28
RA	2699	.	1	321786	0	A	G	consensus_score=105.9	frequency=1	major_base=G	major_cov=32/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/11
RA	2700	.	1	322720	0	A	G	consensus_score=208.0	frequency=1	major_base=G	major_cov=43/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/26
RA	2701	.	1	324447	0	A	G	consensus_score=293.8	frequency=1	major_base=G	major_cov=49/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/52
RA	2702	.	1	325460	0	G	A	consensus_score=90.6	frequency=1	major_base=A	major_cov=16/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/17
RA	2703	.	1	326057	0	T	C	consensus_score=254.3	frequency=1	major_base=C	major_cov=55/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/33
RA	2704	.	1	326141	0	C	T	consensus_score=244.2	frequency=1	major_base=T	major_cov=46/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/39
RA	2705	.	1	326666	0	T	C	consensus_score=245.8	frequency=1	major_base=C	major_cov=43/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/41
RA	2706	.	1	326937	1	.	T	bias_e_value=1871280	bias_p_value=0.889932	consensus_reject=FREQUENCY_CUTOFF	consensus_score=23.9	fisher_strand_p_value=0.608392	frequency=6.667e-01	ks_quality_p_value=0.935507	major_base=T	major_cov=4/6	major_frequency=6.667e-01	minor_base=.	minor_cov=3/2	new_cov=4/6	polymorphism_frequency=6.667e-01	polymorphism_score=12.9	prediction=polymorphism	ref_cov=3/2	total_cov=7/8
RA	2707	.	1	326937	2	.	A	bias_e_value=1915000	bias_p_value=0.910724	consensus_reject=FREQUENCY_CUTOFF	consensus_score=25.4	fisher_strand_p_value=0.608392	frequency=6.667e-01	ks_quality_p_value=1	major_base=A	major_cov=4/6	major_frequency=6.667e-01	minor_base=.	minor_cov=3/2	new_cov=4/6	polymorphism_frequency=6.667e-01	polymorphism_score=12.7	prediction=polymorphism	ref_cov=3/2	total_cov=7/8
RA	2708	.	1	326937	3	.	A	bias_e_value=1871280	bias_p_value=0.889932	consensus_reject=FREQUENCY_CUTOFF	consensus_score=23.8	fisher_strand_p_value=0.608392	frequency=6.667e-01	ks_quality_p_value=0.935507	major_base=A	major_cov=4/6	major_frequency=6.667e-01	minor_base=.	minor_cov=3/2	new_cov=4/6	polymorphism_frequency=6.667e-01	polymorphism_score=12.7	prediction=polymorphism	ref_cov=3/2	total_cov=7/8
RA	2709	.	1	326937	4	.	T	bias_e_value=1871280	bias_p_value=0.889932	consensus_reject=FREQUENCY_CUTOFF	consensus_score=25.8	fisher_strand_p_value=0.608392	frequency=6.667e-01	ks_quality_p_value=0.935507	major_base=T	major_cov=4/6	major_frequency=6.667e-01	minor_base=.	minor_cov=3/2	new_cov=4/6	polymorphism_frequency=6.667e-01	polymorphism_score=12.9	prediction=polymorphism	ref_cov=3/2	total_cov=7/8
RA	2710	.	1	326937	5	.	T	bias_e_value=1871280	bias_p_value=0.889932	consensus_reject=FREQUENCY_CUTOFF	consensus_score=25.1	fisher_strand_p_value=0.608392	frequency=6.667e-01	ks_quality_p_value=0.935507	major_base=T	major_cov=4/6	major_frequency=6.667e-01	minor_base=.	minor_cov=3/2	new_cov=4/6	polymorphism_frequency=6.667e-01	polymorphism_score=12.9	prediction=polymorphism	ref_cov=3/2	total_cov=7/8
RA	2711	.	1	326937	6	.	A	bias_e_value=1915000	bias_p_value=0.910724	consensus_reject=FREQUENCY_CUTOFF	consensus_score=25.7	fisher_strand_p_value=0.608392	frequency=6.667e-01	ks_quality_p_value=1	major_base=A	major_cov=4/6	major_frequency=6.667e-01	minor_base=.	minor_cov=3/2	new_cov=4/6	polymorphism_frequency=6.667e-01	polymorphism_score=12.7	prediction=polymorphism	ref_cov=3/2	total_cov=7/8
RA	2712	.	1	326937	7	.	G	bias_e_value=1915000	bias_p_value=0.910724	consensus_reject=FREQUENCY_CUTOFF	consensus_score=23.2	fisher_strand_p_value=0.608392	frequency=6.667e-01	ks_quality_p_value=1	major_base=G	major_cov=4/6	major_frequency=6.667e-01	minor_base=.	minor_cov=3/2	new_cov=4/6	polymorphism_frequency=6.667e-01	polymorphism_score=15.1	prediction=polymorphism	ref_cov=3/2	total_cov=7/8
RA	2713	.	1	326937	8	.	C	bias_e_value=1871280	bias_p_value=0.889932	consensus_reject=FREQUENCY_CUTOFF	consensus_score=23.5	fisher_strand_p_value=0.608392	frequency=6.667e-01	ks_quality_p_value=0.935507	major_base=C	major_cov=4/6	major_frequency=6.667e-01	minor_base=.	minor_cov=3/2	new_cov=4/6	polymorphism_frequency=6.667e-01	polymorphism_score=15.3	prediction=polymorphism	ref_cov=3/2	total_cov=7/8
RA	2714	.	1	326937	9	.	A	bias_e_value=1915000	bias_p_value=0.910724	consensus_reject=FREQUENCY_CUTOFF	consensus_score=25.3	fisher_strand_p_value=0.608392	frequency=6.667e-01	ks_quality_p_value=1	major_base=A	major_cov=4/6	major_frequency=6.667e-01	minor_base=.	minor_cov=3/2	new_cov=4/6	polymorphism_frequency=6.667e-01	polymorphism_score=12.7	prediction=polymorphism	ref_cov=3/2	total_cov=7/8
RA	2715	.	1	326937	10	.	G	bias_e_value=1915000	bias_p_value=0.910724	consensus_reject=FREQUENCY_CUTOFF	consensus_score=23.2	fisher_strand_p_value=0.608392	frequency=6.667e-01	ks_quality_p_value=1	major_base=G	major_cov=4/6	major_frequency=6.667e-01	minor_base=.	minor_cov=3/2	new_cov=4/6	polymorphism_frequency=6.667e-01	polymorphism_score=15.1	prediction=polymorphism	ref_cov=3/2	total_cov=7/8
RA	2716	.	1	326937	11	.	A	bias_e_value=1915000	bias_p_value=0.910724	consensus_reject=FREQUENCY_CUTOFF	consensus_score=25.3	fisher_strand_p_value=0.608392	frequency=6.667e-01	ks_quality_p_value=1	major_base=A	major_cov=4/6	major_frequency=6.667e-01	minor_base=.	minor_cov=3/2	new_cov=4/6	polymorphism_frequency=6.667e-01	polymorphism_score=12.7	prediction=polymorphism	ref_cov=3/2	total_cov=7/8
RA	2717	.	1	327977	0	A	C	consensus_score=47.6	frequency=1	major_base=C	major_cov=8/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/10
RA	2718	.	1	328044	0	G	C	consensus_score=90.6	frequency=1	major_base=C	major_cov=21/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/12
RA	2719	.	1	328487	0	C	T	consensus_score=257.2	frequency=1	major_base=T	major_cov=46/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/47
RA	2720	.	1	328891	0	T	A	bias_e_value=2102720	bias_p_value=1	consensus_score=266.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.99975	major_base=A	major_cov=42/47	major_frequency=9.889e-01	minor_base=T	minor_cov=0/1	new_cov=42/47	polymorphism_frequency=9.889e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=42/48
RA	2721	.	1	332213	0	C	T	consensus_score=199.3	frequency=1	major_base=T	major_cov=27/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/43
RA	2722	.	1	333017	0	T	C	consensus_score=223.7	frequency=1	major_base=C	major_cov=47/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/29
RA	2723	.	1	333447	0	A	G	consensus_score=308.9	frequency=1	major_base=G	major_cov=43/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/64
RA	2724	.	1	333629	0	A	G	consensus_score=275.8	frequency=1	major_base=G	major_cov=34/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/57
RA	2725	.	1	336265	0	G	A	consensus_score=272.1	frequency=1	major_base=A	major_cov=49/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/46
RA	2726	.	1	340422	0	A	G	consensus_score=339.9	frequency=1	major_base=G	major_cov=66/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/51
RA	2727	.	1	340821	0	T	C	bias_e_value=6.72931e-08	bias_p_value=3.20029e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=141.9	fisher_strand_p_value=8.97781e-16	frequency=2.796e-01	ks_quality_p_value=1	major_base=T	major_cov=58/9	major_frequency=7.204e-01	minor_base=C	minor_cov=0/26	new_cov=0/26	polymorphism_frequency=2.796e-01	polymorphism_score=17.0	prediction=polymorphism	ref_cov=58/9	total_cov=58/36
RA	2728	.	1	342428	0	C	T	consensus_score=295.5	frequency=1	major_base=T	major_cov=59/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/43
RA	2729	.	1	344274	0	T	C	consensus_score=398.1	frequency=1	major_base=C	major_cov=68/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=68/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/66
RA	2730	.	1	349769	0	G	T	bias_e_value=7.00897e-09	bias_p_value=3.33329e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=189.6	fisher_strand_p_value=8.77835e-17	frequency=2.809e-01	ks_quality_p_value=1	major_base=G	major_cov=6/58	major_frequency=7.191e-01	minor_base=T	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.809e-01	polymorphism_score=13.5	prediction=polymorphism	ref_cov=6/58	total_cov=31/58
RA	2731	.	1	350515	0	C	T	consensus_score=420.9	frequency=1	major_base=T	major_cov=62/82	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/82	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/82
RA	2732	.	1	351704	0	A	G	bias_e_value=0.0096845	bias_p_value=4.6057e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=211.7	fisher_strand_p_value=1.97277e-10	frequency=2.326e-01	ks_quality_p_value=1	major_base=A	major_cov=39/60	major_frequency=7.674e-01	minor_base=G	minor_cov=30/0	new_cov=30/0	polymorphism_frequency=2.326e-01	polymorphism_score=12.2	prediction=polymorphism	ref_cov=39/60	total_cov=71/60
RA	2733	.	1	352123	0	C	T	consensus_score=359.6	frequency=1	major_base=T	major_cov=54/71	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/71	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/71
RA	2734	.	1	352251	0	C	A	bias_e_value=2102720	bias_p_value=1	consensus_score=313.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999853	major_base=A	major_cov=58/58	major_frequency=9.915e-01	minor_base=C	minor_cov=0/1	new_cov=58/58	polymorphism_frequency=9.915e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=58/59
RA	2735	.	1	352301	0	A	C	bias_e_value=5.92161e-08	bias_p_value=2.81617e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=239.0	fisher_strand_p_value=7.8712e-16	frequency=3.077e-01	ks_quality_p_value=1	major_base=A	major_cov=63/27	major_frequency=6.923e-01	minor_base=C	minor_cov=0/40	new_cov=0/40	polymorphism_frequency=3.077e-01	polymorphism_score=17.7	prediction=polymorphism	ref_cov=63/27	total_cov=63/68
RA	2736	.	1	352883	0	G	T	bias_e_value=6.1878e-05	bias_p_value=2.94276e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=180.9	fisher_strand_p_value=1.02884e-12	frequency=2.444e-01	ks_quality_p_value=1	major_base=G	major_cov=12/56	major_frequency=7.556e-01	minor_base=T	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.444e-01	polymorphism_score=20.8	prediction=polymorphism	ref_cov=12/56	total_cov=34/56
RA	2737	.	1	352897	0	C	A	bias_e_value=0.692295	bias_p_value=3.29238e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=183.9	fisher_strand_p_value=1.74535e-08	frequency=2.069e-01	ks_quality_p_value=1	major_base=C	major_cov=20/49	major_frequency=7.931e-01	minor_base=A	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.069e-01	polymorphism_score=10.7	prediction=polymorphism	ref_cov=20/49	total_cov=39/49
RA	2738	.	1	354798	0	A	G	bias_e_value=1728870	bias_p_value=0.822205	consensus_score=436.3	fisher_strand_p_value=0.466667	frequency=1	ks_quality_p_value=0.999642	major_base=G	major_cov=80/69	major_frequency=9.933e-01	minor_base=A	minor_cov=0/1	new_cov=80/69	polymorphism_frequency=9.933e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=80/70
RA	2739	.	1	355551	0	A	G	bias_e_value=0.0460083	bias_p_value=2.18804e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=120.1	fisher_strand_p_value=1.00758e-09	frequency=2.192e-01	ks_quality_p_value=1	major_base=A	major_cov=10/47	major_frequency=7.808e-01	minor_base=G	minor_cov=16/0	new_cov=16/0	polymorphism_frequency=2.192e-01	polymorphism_score=12.8	prediction=polymorphism	ref_cov=10/47	total_cov=27/47
RA	2740	.	1	355607	0	C	T	bias_e_value=0.12746	bias_p_value=6.06167e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=134.0	fisher_strand_p_value=2.93597e-09	frequency=2.329e-01	ks_quality_p_value=1	major_base=C	major_cov=12/44	major_frequency=7.671e-01	minor_base=T	minor_cov=17/0	new_cov=17/0	polymorphism_frequency=2.329e-01	polymorphism_score=11.6	prediction=polymorphism	ref_cov=12/44	total_cov=29/44
RA	2741	.	1	356705	0	A	G	bias_e_value=2102660	bias_p_value=0.999972	consensus_score=227.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.9925	major_base=G	major_cov=61/20	major_frequency=9.878e-01	minor_base=A	minor_cov=1/0	new_cov=61/20	polymorphism_frequency=9.878e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=62/20
RA	2742	.	1	360796	0	A	G	consensus_score=307.3	frequency=1	major_base=G	major_cov=46/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/59
RA	2743	.	1	361124	0	A	G	consensus_score=410.2	frequency=1	major_base=G	major_cov=76/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=76/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=76/65
RA	2744	.	1	361868	0	T	C	consensus_score=409.1	frequency=1	major_base=C	major_cov=85/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=85/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=85/52
RA	2745	.	1	363292	0	G	A	consensus_score=229.6	frequency=1	major_base=A	major_cov=44/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/32
RA	2746	.	1	365182	0	A	T	consensus_score=193.4	frequency=1	major_base=T	major_cov=37/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/32
RA	2747	.	1	365188	0	C	T	consensus_score=192.0	frequency=1	major_base=T	major_cov=37/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/32
RA	2748	.	1	365234	0	T	G	consensus_score=128.5	frequency=1	major_base=G	major_cov=25/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/22
RA	2749	.	1	365238	0	T	C	consensus_score=132.8	frequency=1	major_base=C	major_cov=25/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/22
RA	2750	.	1	366198	0	T	C	consensus_score=350.1	frequency=1	major_base=C	major_cov=70/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=70/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=70/49
RA	2751	.	1	366447	0	C	T	bias_e_value=0.00535224	bias_p_value=2.54539e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=190.7	fisher_strand_p_value=1.0621e-10	frequency=2.091e-01	ks_quality_p_value=1	major_base=C	major_cov=62/25	major_frequency=7.909e-01	minor_base=T	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=2.091e-01	polymorphism_score=15.8	prediction=polymorphism	ref_cov=62/25	total_cov=62/48
RA	2752	.	1	366455	0	C	A	bias_e_value=0.00288731	bias_p_value=1.37313e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=252.7	fisher_strand_p_value=5.57972e-11	frequency=2.124e-01	ks_quality_p_value=1	major_base=C	major_cov=63/26	major_frequency=7.876e-01	minor_base=A	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=2.124e-01	polymorphism_score=11.0	prediction=polymorphism	ref_cov=63/26	total_cov=63/50
RA	2753	.	1	366945	0	T	C	consensus_score=316.3	frequency=1	major_base=C	major_cov=55/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/54
RA	2754	.	1	367222	0	G	A	consensus_score=257.0	frequency=1	major_base=A	major_cov=43/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/44
RA	2755	.	1	368251	0	C	T	consensus_score=314.7	frequency=1	major_base=T	major_cov=52/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/56
RA	2756	.	1	369133	0	G	A	consensus_score=313.2	frequency=1	major_base=A	major_cov=59/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/50
RA	2757	.	1	370162	0	G	A	bias_e_value=1676300	bias_p_value=0.797204	consensus_score=376.8	fisher_strand_p_value=0.438462	frequency=1	ks_quality_p_value=0.992396	major_base=A	major_cov=56/73	major_frequency=9.923e-01	minor_base=G	minor_cov=1/0	new_cov=56/73	polymorphism_frequency=9.923e-01	polymorphism_score=-5.4	prediction=consensus	ref_cov=1/0	total_cov=57/73
RA	2758	.	1	371533	0	G	A	consensus_score=382.9	frequency=1	major_base=A	major_cov=58/71	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/71	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/71
RA	2759	.	1	374261	0	T	C	consensus_score=427.3	frequency=1	major_base=C	major_cov=77/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=77/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=77/67
RA	2760	.	1	376294	0	C	T	consensus_score=323.9	frequency=1	major_base=T	major_cov=45/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/64
RA	2761	.	1	376525	0	T	G	bias_e_value=1605370	bias_p_value=0.763474	consensus_score=346.8	fisher_strand_p_value=0.396694	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=47/73	major_frequency=9.917e-01	minor_base=C	minor_cov=1/0	new_cov=47/73	polymorphism_frequency=9.917e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/73
RA	2762	.	1	376687	1	.	A	bias_e_value=862787	bias_p_value=0.410319	consensus_score=385.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.137501	major_base=A	major_cov=54/71	major_frequency=9.921e-01	minor_base=.	minor_cov=0/1	new_cov=54/71	polymorphism_frequency=9.921e-01	polymorphism_score=-3.6	prediction=consensus	ref_cov=0/1	total_cov=54/72
RA	2763	.	1	380531	0	T	G	bias_e_value=3.28961e-10	bias_p_value=1.56445e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=274.3	fisher_strand_p_value=3.80552e-18	frequency=2.778e-01	ks_quality_p_value=1	major_base=T	major_cov=18/73	major_frequency=7.222e-01	minor_base=G	minor_cov=35/0	new_cov=35/0	polymorphism_frequency=2.778e-01	polymorphism_score=11.2	prediction=polymorphism	ref_cov=18/73	total_cov=54/73
RA	2764	.	1	382024	0	T	C	bias_e_value=1774510	bias_p_value=0.843913	consensus_score=328.2	fisher_strand_p_value=0.496183	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=64/65	major_frequency=9.847e-01	minor_base=A	minor_cov=2/0	new_cov=64/65	polymorphism_frequency=9.847e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/65
RA	2765	.	1	382193	0	C	A	bias_e_value=1220310	bias_p_value=0.580349	consensus_score=310.4	fisher_strand_p_value=0.238491	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=51/55	major_frequency=9.815e-01	minor_base=G	minor_cov=2/0	new_cov=51/55	polymorphism_frequency=9.815e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/55
RA	2766	.	1	383378	0	G	A	consensus_score=310.8	frequency=1	major_base=A	major_cov=53/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/51
RA	2767	.	1	384420	0	G	A	consensus_score=367.2	frequency=1	major_base=A	major_cov=54/69	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/69	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/69
RA	2768	.	1	384483	0	T	G	consensus_score=364.1	frequency=1	major_base=G	major_cov=62/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/57
RA	2769	.	1	386100	0	C	T	consensus_score=400.8	frequency=1	major_base=T	major_cov=62/75	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/75	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/75
RA	2770	.	1	389302	0	A	T	bias_e_value=257.38	bias_p_value=0.000122403	consensus_reject=FREQUENCY_CUTOFF	consensus_score=159.8	fisher_strand_p_value=9.76348e-06	frequency=2.632e-01	ks_quality_p_value=1	major_base=A	major_cov=29/27	major_frequency=7.368e-01	minor_base=T	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.632e-01	polymorphism_score=11.8	prediction=polymorphism	ref_cov=29/27	total_cov=29/48
RA	2771	.	1	389331	0	C	T	bias_e_value=56.5201	bias_p_value=2.68795e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=131.9	fisher_strand_p_value=2.13312e-06	frequency=2.208e-01	ks_quality_p_value=0.888919	major_base=C	major_cov=37/23	major_frequency=7.792e-01	minor_base=T	minor_cov=0/17	new_cov=0/17	polymorphism_frequency=2.208e-01	polymorphism_score=12.7	prediction=polymorphism	ref_cov=37/23	total_cov=37/40
RA	2772	.	1	394413	0	T	G	consensus_score=349.6	frequency=1	major_base=G	major_cov=55/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/64
RA	2773	.	1	394978	0	A	G	consensus_score=298.6	frequency=1	major_base=G	major_cov=40/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/61
RA	2774	.	1	400601	0	G	A	consensus_score=261.4	frequency=1	major_base=A	major_cov=64/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/22
RA	2775	.	1	401234	0	G	A	consensus_score=282.6	frequency=1	major_base=A	major_cov=44/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/53
RA	2776	.	1	402210	1	.	T	consensus_score=272.0	frequency=1	major_base=T	major_cov=45/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/46
RA	2777	.	1	403420	0	C	G	consensus_score=440.2	frequency=1	major_base=G	major_cov=81/69	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=81/69	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=81/69
RA	2778	.	1	404795	0	G	A	consensus_score=332.7	frequency=1	major_base=A	major_cov=58/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/59
RA	2779	.	1	404919	0	T	C	consensus_score=301.6	frequency=1	major_base=C	major_cov=60/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/40
RA	2780	.	1	406315	0	T	C	consensus_score=349.4	frequency=1	major_base=C	major_cov=64/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/51
RA	2781	.	1	406378	0	C	A	consensus_score=315.8	frequency=1	major_base=A	major_cov=60/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/49
RA	2782	.	1	408698	0	A	C	bias_e_value=1.34537e-09	bias_p_value=6.39825e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=266.6	fisher_strand_p_value=1.61304e-17	frequency=2.891e-01	ks_quality_p_value=1	major_base=A	major_cov=70/21	major_frequency=7.109e-01	minor_base=C	minor_cov=0/37	new_cov=0/37	polymorphism_frequency=2.891e-01	polymorphism_score=12.7	prediction=polymorphism	ref_cov=70/21	total_cov=70/58
RA	2783	.	1	411023	0	T	C	consensus_score=424.6	frequency=1	major_base=C	major_cov=75/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=75/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=75/66
RA	2784	.	1	413333	0	G	A	consensus_score=312.3	frequency=1	major_base=A	major_cov=63/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/43
RA	2785	.	1	415272	0	G	A	consensus_score=200.9	frequency=1	major_base=A	major_cov=38/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/33
RA	2786	.	1	415553	0	G	A	consensus_score=360.6	frequency=1	major_base=A	major_cov=67/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=67/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/57
RA	2787	.	1	417262	0	A	G	consensus_score=448.5	frequency=1	major_base=G	major_cov=76/68	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=76/68	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=76/68
RA	2788	.	1	417440	0	A	G	consensus_score=419.3	frequency=1	major_base=G	major_cov=91/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=91/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=91/54
RA	2789	.	1	418080	0	G	T	consensus_score=407.8	frequency=1	major_base=T	major_cov=74/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=74/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=74/66
RA	2790	.	1	418118	0	G	T	consensus_score=431.8	frequency=1	major_base=T	major_cov=79/74	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=79/74	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=79/74
RA	2791	.	1	419693	0	T	C	consensus_score=242.5	frequency=1	major_base=C	major_cov=43/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/38
RA	2792	.	1	420942	0	T	C	consensus_score=344.7	frequency=1	major_base=C	major_cov=57/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/62
RA	2793	.	1	421250	0	G	A	consensus_score=322.5	frequency=1	major_base=A	major_cov=62/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/50
RA	2794	.	1	421860	0	T	G	bias_e_value=7.67338e-09	bias_p_value=3.64926e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=172.7	fisher_strand_p_value=9.6341e-17	frequency=3.226e-01	ks_quality_p_value=1	major_base=T	major_cov=9/54	major_frequency=6.774e-01	minor_base=G	minor_cov=30/0	new_cov=30/0	polymorphism_frequency=3.226e-01	polymorphism_score=10.2	prediction=polymorphism	ref_cov=9/54	total_cov=39/54
RA	2795	.	1	421873	0	C	T	bias_e_value=0.00371587	bias_p_value=1.76717e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=149.3	fisher_strand_p_value=7.25849e-11	frequency=2.418e-01	ks_quality_p_value=1	major_base=C	major_cov=17/52	major_frequency=7.582e-01	minor_base=T	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.418e-01	polymorphism_score=14.1	prediction=polymorphism	ref_cov=17/52	total_cov=39/52
RA	2796	.	1	421909	0	G	T	bias_e_value=0.000193305	bias_p_value=9.19309e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=202.1	fisher_strand_p_value=3.35254e-12	frequency=2.371e-01	ks_quality_p_value=1	major_base=G	major_cov=16/58	major_frequency=7.629e-01	minor_base=T	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.371e-01	polymorphism_score=18.0	prediction=polymorphism	ref_cov=16/58	total_cov=39/58
RA	2797	.	1	428896	0	G	A	consensus_score=269.9	frequency=1	major_base=A	major_cov=49/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/44
RA	2798	.	1	432788	0	T	C	consensus_score=267.7	frequency=1	major_base=C	major_cov=42/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/49
RA	2799	.	1	433161	0	T	C	consensus_score=271.3	frequency=1	major_base=C	major_cov=36/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/54
RA	2800	.	1	433678	0	T	C	consensus_score=276.6	frequency=1	major_base=C	major_cov=40/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/49
RA	2801	.	1	436039	0	C	T	consensus_score=276.0	frequency=1	major_base=T	major_cov=48/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/47
RA	2802	.	1	438308	0	A	C	consensus_score=120.0	frequency=1	major_base=C	major_cov=14/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/26
RA	2803	.	1	439834	0	G	T	consensus_score=259.9	frequency=1	major_base=T	major_cov=43/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/47
RA	2804	.	1	441690	0	A	G	consensus_score=243.7	frequency=1	major_base=G	major_cov=37/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/47
RA	2805	.	1	441721	0	A	G	consensus_score=279.7	frequency=1	major_base=G	major_cov=40/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/51
RA	2806	.	1	441854	0	A	C	consensus_score=247.0	frequency=1	major_base=C	major_cov=34/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/52
RA	2807	.	1	441865	0	T	A	consensus_score=207.1	frequency=1	major_base=A	major_cov=30/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/42
RA	2808	.	1	441867	0	C	G	consensus_score=214.6	frequency=1	major_base=G	major_cov=30/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/42
RA	2809	.	1	441869	0	C	T	consensus_score=204.3	frequency=1	major_base=T	major_cov=30/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/42
RA	2810	.	1	441874	0	G	C	consensus_score=206.9	frequency=1	major_base=C	major_cov=30/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/42
RA	2811	.	1	442853	0	A	.	consensus_score=85.0	deleted=1	frequency=1	major_base=.	major_cov=13/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/8
RA	2812	.	1	442863	0	T	C	consensus_score=61.7	deleted=1	frequency=1	major_base=C	major_cov=13/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/9
RA	2813	.	1	443027	0	T	C	consensus_score=235.2	frequency=1	major_base=C	major_cov=44/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/33
RA	2814	.	1	443038	0	T	G	consensus_score=223.3	frequency=1	major_base=G	major_cov=45/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/34
RA	2815	.	1	443061	0	G	A	consensus_score=237.5	frequency=1	major_base=A	major_cov=49/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/34
RA	2816	.	1	443065	0	G	A	consensus_score=242.9	frequency=1	major_base=A	major_cov=48/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/33
RA	2817	.	1	443108	0	C	T	consensus_score=237.5	frequency=1	major_base=T	major_cov=47/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/35
RA	2818	.	1	443125	0	G	A	consensus_score=220.4	frequency=1	major_base=A	major_cov=44/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/34
RA	2819	.	1	443145	0	G	T	bias_e_value=1146290	bias_p_value=0.545147	consensus_score=227.2	fisher_strand_p_value=0.214783	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=41/37	major_frequency=9.286e-01	minor_base=G	minor_cov=5/1	new_cov=41/37	polymorphism_frequency=9.286e-01	polymorphism_score=7.6	prediction=consensus	ref_cov=5/1	total_cov=46/38
RA	2820	.	1	443158	0	C	T	bias_e_value=827867	bias_p_value=0.393712	consensus_score=213.8	fisher_strand_p_value=0.202011	frequency=1	ks_quality_p_value=0.639856	major_base=T	major_cov=38/42	major_frequency=9.302e-01	minor_base=C	minor_cov=5/1	new_cov=38/42	polymorphism_frequency=9.302e-01	polymorphism_score=3.1	prediction=consensus	ref_cov=5/1	total_cov=43/43
RA	2821	.	1	443172	0	A	G	consensus_score=264.4	frequency=1	major_base=G	major_cov=45/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/46
RA	2822	.	1	443305	0	T	C	bias_e_value=1012080	bias_p_value=0.481319	consensus_score=163.0	fisher_strand_p_value=0.189578	frequency=1	ks_quality_p_value=0.927041	major_base=C	major_cov=21/39	major_frequency=9.091e-01	minor_base=T	minor_cov=4/2	new_cov=21/39	polymorphism_frequency=9.091e-01	polymorphism_score=4.7	prediction=consensus	ref_cov=4/2	total_cov=25/41
RA	2823	.	1	443312	0	T	C	consensus_score=185.5	frequency=1	major_base=C	major_cov=22/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/38
RA	2824	.	1	443388	0	C	G	consensus_score=90.1	frequency=1	major_base=G	major_cov=13/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/22
RA	2825	.	1	443404	0	T	C	bias_e_value=1274920	bias_p_value=0.60632	consensus_score=24.9	fisher_strand_p_value=0.52322	frequency=1	ks_quality_p_value=0.491386	major_base=C	major_cov=5/11	major_frequency=8.421e-01	minor_base=T	minor_cov=2/1	new_cov=5/11	polymorphism_frequency=8.421e-01	polymorphism_score=-0.2	prediction=consensus	ref_cov=2/1	total_cov=8/12
RA	2826	.	1	443405	0	T	G	bias_e_value=1498220	bias_p_value=0.712514	consensus_score=34.0	fisher_strand_p_value=0.536842	frequency=1	ks_quality_p_value=0.643279	major_base=G	major_cov=6/11	major_frequency=8.500e-01	minor_base=A	minor_cov=2/1	new_cov=6/11	polymorphism_frequency=8.500e-01	polymorphism_score=0.1	prediction=consensus	ref_cov=0/0	total_cov=8/12
RA	2827	.	1	443406	0	G	A	bias_e_value=1611770	bias_p_value=0.766516	consensus_score=44.4	fisher_strand_p_value=0.4	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=7/12	major_frequency=9.500e-01	minor_base=G	minor_cov=1/0	new_cov=7/12	polymorphism_frequency=9.500e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=8/12
RA	2828	.	1	443412	0	T	C	consensus_score=46.0	frequency=1	major_base=C	major_cov=8/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/12
RA	2829	.	1	443416	0	G	A	bias_e_value=1182290	bias_p_value=0.562267	consensus_score=29.5	fisher_strand_p_value=0.536842	frequency=1	ks_quality_p_value=0.421175	major_base=A	major_cov=6/11	major_frequency=8.500e-01	minor_base=G	minor_cov=2/1	new_cov=6/11	polymorphism_frequency=8.500e-01	polymorphism_score=-0.0	prediction=consensus	ref_cov=2/1	total_cov=8/12
RA	2830	.	1	443417	0	G	T	bias_e_value=1003910	bias_p_value=0.477434	consensus_score=39.1	fisher_strand_p_value=0.536842	frequency=1	ks_quality_p_value=0.323223	major_base=T	major_cov=6/11	major_frequency=8.500e-01	minor_base=A	minor_cov=2/1	new_cov=6/11	polymorphism_frequency=8.500e-01	polymorphism_score=3.6	prediction=consensus	ref_cov=0/0	total_cov=8/12
RA	2831	.	1	443419	0	G	C	bias_e_value=654651	bias_p_value=0.311335	consensus_score=40.8	fisher_strand_p_value=0.536842	frequency=1	ks_quality_p_value=0.171237	major_base=C	major_cov=6/11	major_frequency=8.500e-01	minor_base=G	minor_cov=2/1	new_cov=6/11	polymorphism_frequency=8.500e-01	polymorphism_score=3.5	prediction=consensus	ref_cov=2/1	total_cov=8/12
RA	2832	.	1	443464	0	A	G	consensus_score=21.1	frequency=1	major_base=G	major_cov=6/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/3
RA	2833	.	1	443473	0	A	T	consensus_score=66.1	frequency=1	major_base=T	major_cov=15/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/9
RA	2834	.	1	443474	0	T	G	consensus_score=69.8	frequency=1	major_base=G	major_cov=15/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/9
RA	2835	.	1	443477	0	A	G	consensus_score=69.7	frequency=1	major_base=G	major_cov=15/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/9
RA	2836	.	1	443485	0	T	G	consensus_score=106.9	frequency=1	major_base=G	major_cov=21/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/15
RA	2837	.	1	443491	0	A	G	consensus_score=134.0	frequency=1	major_base=G	major_cov=23/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/22
RA	2838	.	1	443522	0	T	A	consensus_score=194.7	frequency=1	major_base=A	major_cov=31/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/34
RA	2839	.	1	445475	0	C	G	bias_e_value=1725190	bias_p_value=0.820454	consensus_score=318.9	fisher_strand_p_value=0.464286	frequency=1	ks_quality_p_value=0.999839	major_base=G	major_cov=51/60	major_frequency=9.911e-01	minor_base=A	minor_cov=1/0	new_cov=51/60	polymorphism_frequency=9.911e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/60
RA	2840	.	1	446207	0	C	T	consensus_score=185.5	frequency=1	major_base=T	major_cov=30/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/36
RA	2841	.	1	446507	0	A	C	consensus_score=243.6	frequency=1	major_base=C	major_cov=44/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/36
RA	2842	.	1	446512	0	T	C	consensus_score=236.5	frequency=1	major_base=C	major_cov=45/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/36
RA	2843	.	1	452849	0	G	T	consensus_score=272.5	frequency=1	major_base=T	major_cov=40/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/49
RA	2844	.	1	452925	0	C	T	consensus_score=261.1	frequency=1	major_base=T	major_cov=41/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/49
RA	2845	.	1	453147	0	C	T	consensus_score=337.4	frequency=1	major_base=T	major_cov=58/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/57
RA	2846	.	1	453423	0	T	C	consensus_score=276.5	frequency=1	major_base=C	major_cov=48/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/47
RA	2847	.	1	453908	0	C	A	bias_e_value=3.09275e-05	bias_p_value=1.47084e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=184.3	fisher_strand_p_value=5.01634e-13	frequency=2.688e-01	ks_quality_p_value=1	major_base=C	major_cov=54/14	major_frequency=7.312e-01	minor_base=A	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.688e-01	polymorphism_score=28.5	prediction=polymorphism	ref_cov=54/14	total_cov=54/39
RA	2848	.	1	453932	0	G	A	bias_e_value=0.000106053	bias_p_value=5.04361e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=149.0	fisher_strand_p_value=1.79846e-12	frequency=2.809e-01	ks_quality_p_value=1	major_base=G	major_cov=50/14	major_frequency=7.191e-01	minor_base=A	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.809e-01	polymorphism_score=15.0	prediction=polymorphism	ref_cov=50/14	total_cov=50/40
RA	2849	.	1	453958	0	A	C	bias_e_value=0.0054782	bias_p_value=2.60529e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=163.3	fisher_strand_p_value=1.08908e-10	frequency=2.706e-01	ks_quality_p_value=0.999192	major_base=A	major_cov=46/16	major_frequency=7.294e-01	minor_base=C	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=2.706e-01	polymorphism_score=11.9	prediction=polymorphism	ref_cov=46/16	total_cov=46/40
RA	2850	.	1	456685	0	G	A	consensus_score=336.8	frequency=1	major_base=A	major_cov=50/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/66
RA	2851	.	1	457350	0	T	C	consensus_score=344.3	frequency=1	major_base=C	major_cov=60/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/59
RA	2852	.	1	459140	0	C	T	bias_e_value=4.56496e-06	bias_p_value=2.17098e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=117.8	fisher_strand_p_value=6.93615e-14	frequency=3.049e-01	ks_quality_p_value=1	major_base=C	major_cov=48/9	major_frequency=6.951e-01	minor_base=T	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=3.049e-01	polymorphism_score=19.8	prediction=polymorphism	ref_cov=48/9	total_cov=48/34
RA	2853	.	1	459591	0	A	G	consensus_score=283.5	frequency=1	major_base=G	major_cov=53/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/40
RA	2854	.	1	460664	0	G	A	consensus_score=332.1	frequency=1	major_base=A	major_cov=51/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/63
RA	2855	.	1	461914	0	C	T	consensus_score=370.8	frequency=1	major_base=T	major_cov=58/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/65
RA	2856	.	1	462512	0	T	G	bias_e_value=536412	bias_p_value=0.255104	consensus_score=161.0	fisher_strand_p_value=0.656684	frequency=1	ks_quality_p_value=0.105999	major_base=G	major_cov=39/32	major_frequency=9.342e-01	minor_base=T	minor_cov=2/3	new_cov=39/32	polymorphism_frequency=9.342e-01	polymorphism_score=3.2	prediction=consensus	ref_cov=2/3	total_cov=41/35
RA	2857	.	1	462516	0	T	C	bias_e_value=61831.8	bias_p_value=0.0294056	consensus_score=148.4	fisher_strand_p_value=0.653507	frequency=1	ks_quality_p_value=0.00705312	major_base=C	major_cov=39/31	major_frequency=9.333e-01	minor_base=T	minor_cov=2/3	new_cov=39/31	polymorphism_frequency=9.333e-01	polymorphism_score=1.3	prediction=consensus	ref_cov=2/3	total_cov=41/34
RA	2858	.	1	462522	0	C	A	bias_e_value=2102640	bias_p_value=0.999962	consensus_reject=FREQUENCY_CUTOFF	consensus_score=135.4	fisher_strand_p_value=1	frequency=2.432e-01	ks_quality_p_value=0.99135	major_base=C	major_cov=31/25	major_frequency=7.568e-01	minor_base=A	minor_cov=10/8	new_cov=10/8	polymorphism_frequency=2.432e-01	polymorphism_score=42.1	prediction=polymorphism	ref_cov=31/25	total_cov=41/33
RA	2859	.	1	462524	0	G	A	bias_e_value=2097910	bias_p_value=0.997714	consensus_reject=FREQUENCY_CUTOFF	consensus_score=110.5	fisher_strand_p_value=1	frequency=2.466e-01	ks_quality_p_value=0.933154	major_base=G	major_cov=30/25	major_frequency=7.534e-01	minor_base=A	minor_cov=10/8	new_cov=10/8	polymorphism_frequency=2.466e-01	polymorphism_score=29.8	prediction=polymorphism	ref_cov=30/25	total_cov=40/33
RA	2860	.	1	462527	0	T	C	bias_e_value=1910260	bias_p_value=0.908471	consensus_reject=FREQUENCY_CUTOFF	consensus_score=107.9	fisher_strand_p_value=1	frequency=2.466e-01	ks_quality_p_value=0.603893	major_base=T	major_cov=30/25	major_frequency=7.534e-01	minor_base=C	minor_cov=10/8	new_cov=10/8	polymorphism_frequency=2.466e-01	polymorphism_score=32.9	prediction=polymorphism	ref_cov=30/25	total_cov=40/33
RA	2861	.	1	462530	0	T	C	bias_e_value=54478.5	bias_p_value=0.0259086	consensus_reject=FREQUENCY_CUTOFF	consensus_score=109.2	fisher_strand_p_value=1	frequency=2.466e-01	ks_quality_p_value=0.00396792	major_base=T	major_cov=30/25	major_frequency=7.534e-01	minor_base=C	minor_cov=10/8	new_cov=10/8	polymorphism_frequency=2.466e-01	polymorphism_score=34.9	prediction=polymorphism	ref_cov=30/25	total_cov=40/33
RA	2862	.	1	462532	0	G	A	bias_e_value=1812790	bias_p_value=0.862115	consensus_reject=FREQUENCY_CUTOFF	consensus_score=106.8	fisher_strand_p_value=1	frequency=2.466e-01	ks_quality_p_value=0.523185	major_base=G	major_cov=30/25	major_frequency=7.534e-01	minor_base=A	minor_cov=10/8	new_cov=10/8	polymorphism_frequency=2.466e-01	polymorphism_score=30.4	prediction=polymorphism	ref_cov=30/25	total_cov=40/33
RA	2863	.	1	462536	0	T	G	bias_e_value=1966960	bias_p_value=0.935437	consensus_reject=FREQUENCY_CUTOFF	consensus_score=120.6	fisher_strand_p_value=1	frequency=2.535e-01	ks_quality_p_value=0.662896	major_base=T	major_cov=28/25	major_frequency=7.465e-01	minor_base=G	minor_cov=10/8	new_cov=10/8	polymorphism_frequency=2.535e-01	polymorphism_score=47.2	prediction=polymorphism	ref_cov=28/25	total_cov=38/33
RA	2864	.	1	462538	0	A	T	bias_e_value=2102720	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=128.4	fisher_strand_p_value=1	frequency=2.535e-01	ks_quality_p_value=1	major_base=A	major_cov=28/25	major_frequency=7.465e-01	minor_base=T	minor_cov=10/8	new_cov=10/8	polymorphism_frequency=2.535e-01	polymorphism_score=52.6	prediction=polymorphism	ref_cov=28/25	total_cov=38/33
RA	2865	.	1	462539	0	A	C	bias_e_value=2102620	bias_p_value=0.999955	consensus_reject=FREQUENCY_CUTOFF	consensus_score=114.9	fisher_strand_p_value=1	frequency=2.535e-01	ks_quality_p_value=0.990479	major_base=A	major_cov=28/25	major_frequency=7.465e-01	minor_base=C	minor_cov=10/8	new_cov=10/8	polymorphism_frequency=2.535e-01	polymorphism_score=44.3	prediction=polymorphism	ref_cov=28/25	total_cov=38/33
RA	2866	.	1	462551	1	.	C	bias_e_value=2101260	bias_p_value=0.999304	consensus_reject=FREQUENCY_CUTOFF	consensus_score=130.9	fisher_strand_p_value=1	frequency=2.647e-01	ks_quality_p_value=0.962927	major_base=.	major_cov=27/23	major_frequency=7.353e-01	minor_base=C	minor_cov=10/8	new_cov=10/8	polymorphism_frequency=2.647e-01	polymorphism_score=81.9	prediction=polymorphism	ref_cov=27/23	total_cov=37/31
RA	2867	.	1	462551	2	.	T	bias_e_value=2062670	bias_p_value=0.980951	consensus_reject=FREQUENCY_CUTOFF	consensus_score=122.9	fisher_strand_p_value=1	frequency=2.647e-01	ks_quality_p_value=0.811273	major_base=.	major_cov=27/23	major_frequency=7.353e-01	minor_base=T	minor_cov=10/8	new_cov=10/8	polymorphism_frequency=2.647e-01	polymorphism_score=71.4	prediction=polymorphism	ref_cov=27/23	total_cov=37/31
RA	2868	.	1	462558	0	C	A	bias_e_value=177399	bias_p_value=0.0843663	consensus_reject=FREQUENCY_CUTOFF	consensus_score=100.7	fisher_strand_p_value=1	frequency=2.727e-01	ks_quality_p_value=0.0165351	major_base=C	major_cov=26/22	major_frequency=7.273e-01	minor_base=A	minor_cov=10/8	new_cov=10/8	polymorphism_frequency=2.727e-01	polymorphism_score=43.2	prediction=polymorphism	ref_cov=26/22	total_cov=36/30
RA	2869	.	1	462618	0	G	A	consensus_score=84.5	frequency=1	major_base=A	major_cov=25/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/21
RA	2870	.	1	463065	0	G	A	bias_e_value=1666330	bias_p_value=0.792462	consensus_score=297.6	fisher_strand_p_value=0.453133	frequency=1	ks_quality_p_value=0.947784	major_base=A	major_cov=94/71	major_frequency=9.066e-01	minor_base=G	minor_cov=8/9	new_cov=94/71	polymorphism_frequency=9.066e-01	polymorphism_score=25.3	prediction=consensus	ref_cov=8/9	total_cov=102/80
RA	2871	.	1	463074	0	G	A	bias_e_value=1810190	bias_p_value=0.860881	consensus_score=203.8	fisher_strand_p_value=0.555866	frequency=1	ks_quality_p_value=0.93779	major_base=A	major_cov=75/59	major_frequency=8.024e-01	minor_base=G	minor_cov=21/12	new_cov=75/59	polymorphism_frequency=8.024e-01	polymorphism_score=56.1	prediction=consensus	ref_cov=21/12	total_cov=96/71
RA	2872	.	1	464065	0	T	C	consensus_score=268.0	frequency=1	major_base=C	major_cov=42/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/50
RA	2873	.	1	464525	0	C	T	bias_e_value=2102720	bias_p_value=1	consensus_score=262.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999766	major_base=T	major_cov=44/48	major_frequency=9.892e-01	minor_base=G	minor_cov=0/1	new_cov=44/48	polymorphism_frequency=9.892e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/49
RA	2874	.	1	464927	0	T	C	consensus_score=277.8	frequency=1	major_base=C	major_cov=31/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/59
RA	2875	.	1	465331	0	G	A	bias_e_value=0.013466	bias_p_value=6.40407e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=102.1	fisher_strand_p_value=2.81128e-10	frequency=2.667e-01	ks_quality_p_value=0.99035	major_base=G	major_cov=43/12	major_frequency=7.333e-01	minor_base=A	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.667e-01	polymorphism_score=19.5	prediction=polymorphism	ref_cov=43/12	total_cov=43/32
RA	2876	.	1	465377	0	G	A	consensus_score=287.4	frequency=1	major_base=A	major_cov=58/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/37
RA	2877	.	1	465982	0	T	G	consensus_score=305.7	frequency=1	major_base=G	major_cov=48/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/52
RA	2878	.	1	466173	0	T	C	consensus_score=255.3	frequency=1	major_base=C	major_cov=40/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/48
RA	2879	.	1	467303	0	G	A	bias_e_value=0.48973	bias_p_value=2.32903e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=153.5	fisher_strand_p_value=1.2112e-08	frequency=2.381e-01	ks_quality_p_value=1	major_base=G	major_cov=32/48	major_frequency=7.619e-01	minor_base=A	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.381e-01	polymorphism_score=21.4	prediction=polymorphism	ref_cov=32/48	total_cov=57/48
RA	2880	.	1	469426	0	C	T	consensus_score=278.3	frequency=1	major_base=T	major_cov=44/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/52
RA	2881	.	1	470361	0	G	A	consensus_score=268.8	frequency=1	major_base=A	major_cov=46/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/47
RA	2882	.	1	472408	0	T	C	consensus_score=317.2	frequency=1	major_base=C	major_cov=45/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/66
RA	2883	.	1	473475	0	C	T	consensus_score=264.8	frequency=1	major_base=T	major_cov=50/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/39
RA	2884	.	1	478325	0	T	C	consensus_score=293.9	frequency=1	major_base=C	major_cov=44/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/53
RA	2885	.	1	478331	0	A	G	consensus_score=281.5	frequency=1	major_base=G	major_cov=47/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/47
RA	2886	.	1	482989	0	A	C	consensus_score=288.3	frequency=1	major_base=C	major_cov=50/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/48
RA	2887	.	1	484248	0	T	C	bias_e_value=2102710	bias_p_value=0.999996	consensus_score=228.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.997007	major_base=C	major_cov=42/35	major_frequency=9.872e-01	minor_base=T	minor_cov=1/0	new_cov=42/35	polymorphism_frequency=9.872e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=43/35
RA	2888	.	1	486801	0	A	G	consensus_score=275.1	frequency=1	major_base=G	major_cov=50/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/51
RA	2889	.	1	488519	0	C	.	consensus_score=159.6	frequency=1	major_base=.	major_cov=19/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/20
RA	2890	.	1	489045	0	C	T	consensus_score=237.6	frequency=1	major_base=T	major_cov=45/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/37
RA	2891	.	1	491859	0	C	G	consensus_score=217.2	frequency=1	major_base=G	major_cov=43/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/32
RA	2892	.	1	491860	0	G	T	consensus_score=219.3	frequency=1	major_base=T	major_cov=43/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/32
RA	2893	.	1	491861	0	A	C	consensus_score=222.7	frequency=1	major_base=C	major_cov=43/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/32
RA	2894	.	1	491972	0	G	A	consensus_score=235.4	frequency=1	major_base=A	major_cov=49/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/34
RA	2895	.	1	492632	0	G	A	consensus_score=270.5	frequency=1	major_base=A	major_cov=51/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/44
RA	2896	.	1	493370	0	G	T	consensus_score=105.9	frequency=1	major_base=T	major_cov=14/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/22
RA	2897	.	1	493514	0	T	C	consensus_score=93.4	frequency=1	major_base=C	major_cov=22/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/10
RA	2898	.	1	494587	0	T	C	consensus_score=201.4	frequency=1	major_base=C	major_cov=31/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/38
RA	2899	.	1	497935	0	G	A	consensus_score=291.4	frequency=1	major_base=A	major_cov=63/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/37
RA	2900	.	1	501467	0	C	T	consensus_score=283.4	frequency=1	major_base=T	major_cov=53/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/46
RA	2901	.	1	501755	0	G	A	consensus_score=329.7	frequency=1	major_base=A	major_cov=59/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/56
RA	2902	.	1	502494	0	G	A	consensus_score=141.3	frequency=1	major_base=A	major_cov=26/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/24
RA	2903	.	1	504254	0	G	T	consensus_score=308.6	frequency=1	major_base=T	major_cov=52/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/54
RA	2904	.	1	504427	0	G	A	consensus_score=129.2	frequency=1	major_base=A	major_cov=13/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/32
RA	2905	.	1	505279	0	A	G	consensus_score=382.6	frequency=1	major_base=G	major_cov=69/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=69/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=69/55
RA	2906	.	1	505473	0	T	G	bias_e_value=4.0666e-05	bias_p_value=1.93397e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=169.1	fisher_strand_p_value=6.66027e-13	frequency=3.455e-01	ks_quality_p_value=1	major_base=T	major_cov=25/47	major_frequency=6.545e-01	minor_base=G	minor_cov=38/0	new_cov=38/0	polymorphism_frequency=3.455e-01	polymorphism_score=31.6	prediction=polymorphism	ref_cov=25/47	total_cov=63/47
RA	2907	.	1	505850	0	T	C	bias_e_value=2102720	bias_p_value=0.999999	consensus_score=392.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998309	major_base=C	major_cov=65/72	major_frequency=9.928e-01	minor_base=G	minor_cov=0/1	new_cov=65/72	polymorphism_frequency=9.928e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/73
RA	2908	.	1	506935	0	G	A	bias_e_value=2102720	bias_p_value=1	consensus_score=235.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=41/41	major_frequency=9.880e-01	minor_base=C	minor_cov=0/1	new_cov=41/41	polymorphism_frequency=9.880e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/42
RA	2909	.	1	512098	0	C	T	consensus_score=292.0	frequency=1	major_base=T	major_cov=48/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/50
RA	2910	.	1	512736	0	G	C	consensus_score=90.3	frequency=1	major_base=C	major_cov=21/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/11
RA	2911	.	1	513896	0	G	A	consensus_score=210.9	frequency=1	major_base=A	major_cov=40/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/33
RA	2912	.	1	516211	0	C	T	consensus_score=293.6	frequency=1	major_base=T	major_cov=53/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/49
RA	2913	.	1	516406	0	G	A	consensus_score=271.6	frequency=1	major_base=A	major_cov=61/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/32
RA	2914	.	1	517090	0	C	T	bias_e_value=940337	bias_p_value=0.4472	consensus_score=343.0	fisher_strand_p_value=0.156737	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=47/74	major_frequency=9.837e-01	minor_base=A	minor_cov=2/0	new_cov=47/74	polymorphism_frequency=9.837e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/74
RA	2915	.	1	517399	0	T	C	consensus_score=342.1	frequency=1	major_base=C	major_cov=48/69	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/69	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/69
RA	2916	.	1	518700	0	C	T	consensus_score=356.7	frequency=1	major_base=T	major_cov=50/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/67
RA	2917	.	1	519703	1	.	G	bias_e_value=1319290	bias_p_value=0.627422	consensus_score=282.0	fisher_strand_p_value=0.297379	frequency=1	ks_quality_p_value=0.917997	major_base=G	major_cov=64/35	major_frequency=9.706e-01	minor_base=.	minor_cov=1/2	new_cov=64/35	polymorphism_frequency=9.706e-01	polymorphism_score=3.9	prediction=consensus	ref_cov=1/2	total_cov=65/37
RA	2918	.	1	519703	2	.	T	bias_e_value=1319290	bias_p_value=0.627422	consensus_score=288.2	fisher_strand_p_value=0.297379	frequency=1	ks_quality_p_value=0.917997	major_base=T	major_cov=64/35	major_frequency=9.706e-01	minor_base=.	minor_cov=1/2	new_cov=64/35	polymorphism_frequency=9.706e-01	polymorphism_score=2.4	prediction=consensus	ref_cov=1/2	total_cov=65/37
RA	2919	.	1	520576	0	A	G	consensus_score=385.3	frequency=1	major_base=G	major_cov=59/72	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/72	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/72
RA	2920	.	1	524347	0	T	G	bias_e_value=4.87526e-11	bias_p_value=2.31855e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=134.9	fisher_strand_p_value=5.38375e-19	frequency=4.022e-01	ks_quality_p_value=1	major_base=T	major_cov=7/48	major_frequency=5.978e-01	minor_base=G	minor_cov=37/0	new_cov=37/0	polymorphism_frequency=4.022e-01	polymorphism_score=18.6	prediction=polymorphism	ref_cov=7/48	total_cov=44/48
RA	2921	.	1	524374	0	T	G	bias_e_value=3.67768	bias_p_value=1.74901e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=206.6	fisher_strand_p_value=1.0231e-07	frequency=2.549e-01	ks_quality_p_value=1	major_base=T	major_cov=35/41	major_frequency=7.451e-01	minor_base=G	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=2.549e-01	polymorphism_score=18.8	prediction=polymorphism	ref_cov=35/41	total_cov=63/41
RA	2922	.	1	525610	0	A	G	consensus_score=385.6	frequency=1	major_base=G	major_cov=64/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/63
RA	2923	.	1	526358	0	C	T	consensus_score=295.7	frequency=1	major_base=T	major_cov=56/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/45
RA	2924	.	1	528385	0	A	T	bias_e_value=2102720	bias_p_value=1	consensus_score=320.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=63/47	major_frequency=9.910e-01	minor_base=C	minor_cov=1/0	new_cov=63/47	polymorphism_frequency=9.910e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/47
RA	2925	.	1	529478	0	C	A	bias_e_value=1727500	bias_p_value=0.821555	consensus_score=376.6	fisher_strand_p_value=0.465649	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=60/70	major_frequency=9.924e-01	minor_base=G	minor_cov=1/0	new_cov=60/70	polymorphism_frequency=9.924e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/70
RA	2926	.	1	531734	0	G	C	bias_e_value=2102720	bias_p_value=1	consensus_score=336.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=54/62	major_frequency=9.915e-01	minor_base=T	minor_cov=0/1	new_cov=54/62	polymorphism_frequency=9.915e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/63
RA	2927	.	1	534971	0	T	C	consensus_score=275.5	frequency=1	major_base=C	major_cov=47/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/44
RA	2928	.	1	536729	0	T	G	consensus_score=363.4	frequency=1	major_base=G	major_cov=56/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/67
RA	2929	.	1	539340	0	T	C	consensus_score=322.2	frequency=1	major_base=C	major_cov=57/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/48
RA	2930	.	1	539475	0	A	G	consensus_score=280.6	frequency=1	major_base=G	major_cov=48/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/48
RA	2931	.	1	539682	0	A	G	consensus_score=299.3	frequency=1	major_base=G	major_cov=53/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/47
RA	2932	.	1	541354	0	G	A	consensus_score=233.8	frequency=1	major_base=A	major_cov=52/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/28
RA	2933	.	1	541849	0	C	G	bias_e_value=2102720	bias_p_value=0.999999	consensus_score=321.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998414	major_base=G	major_cov=60/46	major_frequency=9.907e-01	minor_base=A	minor_cov=1/0	new_cov=60/46	polymorphism_frequency=9.907e-01	polymorphism_score=-5.1	prediction=consensus	ref_cov=0/0	total_cov=61/46
RA	2934	.	1	542722	0	A	G	bias_e_value=2101770	bias_p_value=0.99955	consensus_score=277.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.970158	major_base=G	major_cov=53/44	major_frequency=9.898e-01	minor_base=A	minor_cov=1/0	new_cov=53/44	polymorphism_frequency=9.898e-01	polymorphism_score=-5.1	prediction=consensus	ref_cov=1/0	total_cov=54/44
RA	2935	.	1	545602	0	T	C	consensus_score=226.9	frequency=1	major_base=C	major_cov=47/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/28
RA	2936	.	1	545989	0	G	A	consensus_score=249.5	frequency=1	major_base=A	major_cov=45/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/44
RA	2937	.	1	547892	0	A	G	consensus_score=296.1	frequency=1	major_base=G	major_cov=53/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/51
RA	2938	.	1	548158	0	C	T	bias_e_value=1555770	bias_p_value=0.739885	consensus_score=224.0	fisher_strand_p_value=0.455696	frequency=1	ks_quality_p_value=0.816396	major_base=T	major_cov=35/43	major_frequency=9.873e-01	minor_base=C	minor_cov=1/0	new_cov=35/43	polymorphism_frequency=9.873e-01	polymorphism_score=-5.0	prediction=consensus	ref_cov=1/0	total_cov=36/43
RA	2939	.	1	548615	0	A	G	consensus_score=198.8	frequency=1	major_base=G	major_cov=30/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/36
RA	2940	.	1	548674	0	A	G	consensus_score=228.6	frequency=1	major_base=G	major_cov=43/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/40
RA	2941	.	1	550387	0	G	A	consensus_score=135.9	frequency=1	major_base=A	major_cov=29/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/19
RA	2942	.	1	551728	0	T	C	consensus_score=316.7	frequency=1	major_base=C	major_cov=54/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/55
RA	2943	.	1	552295	0	C	T	consensus_score=237.9	frequency=1	major_base=T	major_cov=38/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/45
RA	2944	.	1	554856	0	A	C	consensus_score=78.7	frequency=1	major_base=C	major_cov=16/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/12
RA	2945	.	1	554922	0	C	T	consensus_score=23.7	deleted=1	frequency=1	major_base=T	major_cov=5/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/5
RA	2946	.	1	554943	0	C	T	consensus_score=11.8	deleted=1	frequency=1	major_base=T	major_cov=3/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/3
RA	2947	.	1	555244	0	A	G	consensus_score=231.7	frequency=1	major_base=G	major_cov=56/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/63
RA	2948	.	1	555245	0	C	T	consensus_score=223.4	frequency=1	major_base=T	major_cov=56/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/63
RA	2949	.	1	555250	0	G	T	consensus_score=243.7	frequency=1	major_base=T	major_cov=57/68	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/68	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/68
RA	2950	.	1	555370	0	C	T	consensus_score=182.0	frequency=1	major_base=T	major_cov=33/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/38
RA	2951	.	1	559516	0	C	T	consensus_score=170.6	frequency=1	major_base=T	major_cov=25/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/35
RA	2952	.	1	559931	0	A	G	consensus_score=208.0	frequency=1	major_base=G	major_cov=36/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/35
RA	2953	.	1	560546	0	G	T	bias_e_value=0.0726978	bias_p_value=3.45732e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=126.0	fisher_strand_p_value=1.62806e-09	frequency=2.676e-01	ks_quality_p_value=1	major_base=G	major_cov=12/40	major_frequency=7.324e-01	minor_base=T	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.676e-01	polymorphism_score=16.4	prediction=polymorphism	ref_cov=12/40	total_cov=31/40
RA	2954	.	1	560566	0	C	T	bias_e_value=0.0727747	bias_p_value=3.46098e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=95.3	fisher_strand_p_value=1.62986e-09	frequency=2.794e-01	ks_quality_p_value=1	major_base=C	major_cov=11/38	major_frequency=7.206e-01	minor_base=T	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.794e-01	polymorphism_score=11.6	prediction=polymorphism	ref_cov=11/38	total_cov=30/38
RA	2955	.	1	561020	0	T	C	consensus_score=366.7	frequency=1	major_base=C	major_cov=60/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/62
RA	2956	.	1	561754	0	T	C	consensus_score=189.2	frequency=1	major_base=C	major_cov=40/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/25
RA	2957	.	1	562596	0	T	C	consensus_score=278.6	frequency=1	major_base=C	major_cov=54/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/37
RA	2958	.	1	564299	0	A	G	consensus_score=114.4	frequency=1	major_base=G	major_cov=15/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/25
RA	2959	.	1	564336	0	T	.	consensus_score=72.8	deleted=1	frequency=1	major_base=.	major_cov=9/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/11
RA	2960	.	1	564345	0	T	C	consensus_score=45.7	deleted=1	frequency=1	major_base=C	major_cov=9/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/9
RA	2961	.	1	564354	0	A	C	consensus_score=44.6	deleted=1	frequency=1	major_base=C	major_cov=9/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/9
RA	2962	.	1	564742	0	A	G	consensus_score=119.3	frequency=1	major_base=G	major_cov=21/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/36
RA	2963	.	1	564743	0	C	T	consensus_score=114.3	frequency=1	major_base=T	major_cov=21/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/36
RA	2964	.	1	564748	0	G	T	consensus_score=127.1	frequency=1	major_base=T	major_cov=24/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/38
RA	2965	.	1	564809	0	G	A	consensus_score=228.8	frequency=1	major_base=A	major_cov=40/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/60
RA	2966	.	1	566304	0	G	T	consensus_score=126.0	frequency=1	major_base=T	major_cov=17/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/26
RA	2967	.	1	566809	0	C	T	consensus_score=229.1	frequency=1	major_base=T	major_cov=46/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/33
RA	2968	.	1	567047	0	T	C	consensus_score=182.4	frequency=1	major_base=C	major_cov=31/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/30
RA	2969	.	1	567550	0	T	C	consensus_score=192.9	frequency=1	major_base=C	major_cov=39/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/27
RA	2970	.	1	571830	0	G	T	consensus_score=129.8	frequency=1	major_base=T	major_cov=22/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/25
RA	2971	.	1	571833	0	T	C	consensus_score=144.9	frequency=1	major_base=C	major_cov=23/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/25
RA	2972	.	1	571925	0	A	G	consensus_score=62.7	frequency=1	major_base=G	major_cov=17/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/5
RA	2973	.	1	577402	1	.	T	consensus_score=165.1	frequency=1	major_base=T	major_cov=27/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/34
RA	2974	.	1	579092	0	T	C	bias_e_value=1480440	bias_p_value=0.704061	consensus_score=97.2	fisher_strand_p_value=0.348676	frequency=1	ks_quality_p_value=0.967874	major_base=C	major_cov=21/24	major_frequency=9.184e-01	minor_base=T	minor_cov=3/1	new_cov=21/24	polymorphism_frequency=9.184e-01	polymorphism_score=0.8	prediction=consensus	ref_cov=3/1	total_cov=24/25
RA	2975	.	1	579103	0	A	T	bias_e_value=2102630	bias_p_value=0.999955	consensus_score=100.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.990531	major_base=T	major_cov=19/24	major_frequency=9.773e-01	minor_base=A	minor_cov=0/1	new_cov=19/24	polymorphism_frequency=9.773e-01	polymorphism_score=-3.3	prediction=consensus	ref_cov=0/1	total_cov=19/25
RA	2976	.	1	579155	0	T	G	bias_e_value=2100140	bias_p_value=0.998772	consensus_score=64.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.950846	major_base=G	major_cov=14/17	major_frequency=9.688e-01	minor_base=T	minor_cov=0/1	new_cov=14/17	polymorphism_frequency=9.688e-01	polymorphism_score=-3.7	prediction=consensus	ref_cov=0/1	total_cov=14/18
RA	2977	.	1	579159	0	T	C	bias_e_value=2102720	bias_p_value=1	consensus_score=61.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=14/17	major_frequency=9.688e-01	minor_base=T	minor_cov=0/1	new_cov=14/17	polymorphism_frequency=9.688e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=0/1	total_cov=14/18
RA	2978	.	1	579165	0	C	A	bias_e_value=2102720	bias_p_value=1	consensus_score=33.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=7/14	major_frequency=9.545e-01	minor_base=C	minor_cov=0/1	new_cov=7/14	polymorphism_frequency=9.545e-01	polymorphism_score=-3.4	prediction=consensus	ref_cov=0/1	total_cov=7/15
RA	2979	.	1	579167	0	G	A	bias_e_value=2102720	bias_p_value=1	consensus_score=33.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=7/14	major_frequency=9.545e-01	minor_base=G	minor_cov=0/1	new_cov=7/14	polymorphism_frequency=9.545e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=0/1	total_cov=7/15
RA	2980	.	1	579170	0	T	C	consensus_score=36.1	frequency=1	major_base=C	major_cov=7/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/14
RA	2981	.	1	579173	0	T	C	consensus_score=36.4	frequency=1	major_base=C	major_cov=7/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/14
RA	2982	.	1	579175	0	G	A	consensus_score=36.2	frequency=1	major_base=A	major_cov=7/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/14
RA	2983	.	1	579179	0	T	G	consensus_score=36.2	frequency=1	major_base=G	major_cov=7/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/14
RA	2984	.	1	579181	0	A	T	consensus_score=36.1	frequency=1	major_base=T	major_cov=7/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/14
RA	2985	.	1	579182	0	A	C	consensus_score=36.0	frequency=1	major_base=C	major_cov=7/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/14
RA	2986	.	1	579194	1	.	C	consensus_score=36.3	frequency=1	major_base=C	major_cov=7/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/14
RA	2987	.	1	579194	2	.	T	consensus_score=36.0	frequency=1	major_base=T	major_cov=7/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/14
RA	2988	.	1	579201	0	C	A	consensus_score=35.9	frequency=1	major_base=A	major_cov=7/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/14
RA	2989	.	1	585194	0	G	A	consensus_score=282.0	frequency=1	major_base=A	major_cov=51/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/46
RA	2990	.	1	589631	0	T	C	consensus_score=260.3	frequency=1	major_base=C	major_cov=52/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/40
RA	2991	.	1	590948	0	G	A	consensus_score=249.6	frequency=1	major_base=A	major_cov=42/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/45
RA	2992	.	1	596899	0	G	T	consensus_score=302.2	frequency=1	major_base=T	major_cov=49/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/55
RA	2993	.	1	598883	0	C	T	bias_e_value=2102660	bias_p_value=0.99997	consensus_score=383.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.992278	major_base=T	major_cov=68/60	major_frequency=9.922e-01	minor_base=C	minor_cov=1/0	new_cov=68/60	polymorphism_frequency=9.922e-01	polymorphism_score=-5.1	prediction=consensus	ref_cov=1/0	total_cov=69/60
RA	2994	.	1	599711	0	T	C	consensus_score=299.6	frequency=1	major_base=C	major_cov=41/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/57
RA	2995	.	1	601204	0	T	C	consensus_score=312.7	frequency=1	major_base=C	major_cov=45/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/59
RA	2996	.	1	601717	0	G	A	consensus_score=315.4	frequency=1	major_base=A	major_cov=41/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/67
RA	2997	.	1	602296	0	T	C	bias_e_value=1660710	bias_p_value=0.789791	consensus_score=252.7	fisher_strand_p_value=0.431818	frequency=1	ks_quality_p_value=0.987281	major_base=C	major_cov=50/37	major_frequency=9.886e-01	minor_base=T	minor_cov=0/1	new_cov=50/37	polymorphism_frequency=9.886e-01	polymorphism_score=-5.0	prediction=consensus	ref_cov=0/1	total_cov=50/38
RA	2998	.	1	602923	0	C	T	consensus_score=287.0	frequency=1	major_base=T	major_cov=62/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/36
RA	2999	.	1	603702	0	A	G	consensus_score=393.0	frequency=1	major_base=G	major_cov=84/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=84/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=84/52
RA	3000	.	1	603784	0	A	G	consensus_score=401.8	frequency=1	major_base=G	major_cov=76/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=76/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=76/60
RA	3001	.	1	605885	0	C	T	consensus_score=101.9	frequency=1	major_base=T	major_cov=16/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/19
RA	3002	.	1	606775	0	C	T	consensus_score=359.7	frequency=1	major_base=T	major_cov=68/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=68/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/51
RA	3003	.	1	608124	0	G	A	consensus_score=288.9	frequency=1	major_base=A	major_cov=58/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/42
RA	3004	.	1	608338	0	T	A	bias_e_value=0.00923499	bias_p_value=4.39193e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=159.5	fisher_strand_p_value=1.87721e-10	frequency=2.674e-01	ks_quality_p_value=1	major_base=T	major_cov=17/46	major_frequency=7.326e-01	minor_base=A	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.674e-01	polymorphism_score=12.4	prediction=polymorphism	ref_cov=17/46	total_cov=40/46
RA	3005	.	1	608938	0	C	A	consensus_score=321.4	frequency=1	major_base=A	major_cov=56/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/55
RA	3006	.	1	610396	0	A	G	consensus_score=162.0	frequency=1	major_base=G	major_cov=27/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/27
RA	3007	.	1	610874	0	T	C	consensus_score=232.8	frequency=1	major_base=C	major_cov=35/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/46
RA	3008	.	1	613303	0	A	G	consensus_score=316.9	frequency=1	major_base=G	major_cov=60/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/47
RA	3009	.	1	615004	0	A	C	consensus_score=246.7	frequency=1	major_base=C	major_cov=51/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/31
RA	3010	.	1	617630	0	C	T	consensus_score=259.4	frequency=1	major_base=T	major_cov=46/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/41
RA	3011	.	1	620470	0	C	T	consensus_score=226.5	frequency=1	major_base=T	major_cov=47/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/41
RA	3012	.	1	620640	0	C	T	consensus_score=254.7	frequency=1	major_base=T	major_cov=42/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/48
RA	3013	.	1	621244	0	C	T	consensus_score=246.5	frequency=1	major_base=T	major_cov=53/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/32
RA	3014	.	1	624607	0	A	T	bias_e_value=3.91296e-05	bias_p_value=1.8609e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=134.1	fisher_strand_p_value=6.39984e-13	frequency=3.188e-01	ks_quality_p_value=1	major_base=A	major_cov=6/41	major_frequency=6.812e-01	minor_base=T	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=3.188e-01	polymorphism_score=21.5	prediction=polymorphism	ref_cov=6/41	total_cov=28/41
RA	3015	.	1	627712	0	C	A	consensus_score=208.6	frequency=1	major_base=A	major_cov=36/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/37
RA	3016	.	1	627925	0	T	C	consensus_score=244.7	frequency=1	major_base=C	major_cov=30/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/51
RA	3017	.	1	628811	0	C	T	consensus_score=168.5	frequency=1	major_base=T	major_cov=32/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/30
RA	3018	.	1	628970	0	A	G	consensus_score=251.4	frequency=1	major_base=G	major_cov=47/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/40
RA	3019	.	1	629353	0	C	T	consensus_score=170.5	frequency=1	major_base=T	major_cov=25/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/35
RA	3020	.	1	634697	0	A	G	consensus_score=187.1	frequency=1	major_base=G	major_cov=35/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/32
RA	3021	.	1	637372	0	G	A	consensus_score=113.5	frequency=1	major_base=A	major_cov=19/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/20
RA	3022	.	1	639112	0	A	G	consensus_score=233.5	frequency=1	major_base=G	major_cov=41/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/37
RA	3023	.	1	641167	0	G	T	consensus_score=245.6	frequency=1	major_base=T	major_cov=36/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/49
RA	3024	.	1	641193	0	G	A	consensus_score=242.2	frequency=1	major_base=A	major_cov=40/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/42
RA	3025	.	1	642729	0	C	T	consensus_score=188.1	frequency=1	major_base=T	major_cov=34/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/31
RA	3026	.	1	643355	0	T	G	consensus_score=209.5	frequency=1	major_base=G	major_cov=31/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/41
RA	3027	.	1	645215	0	C	T	consensus_score=227.4	frequency=1	major_base=T	major_cov=37/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/43
RA	3028	.	1	646127	0	A	G	consensus_score=174.5	frequency=1	major_base=G	major_cov=38/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/23
RA	3029	.	1	646441	0	C	T	consensus_score=122.9	frequency=1	major_base=T	major_cov=20/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/23
RA	3030	.	1	646568	0	G	A	consensus_score=39.5	deleted=1	frequency=1	major_base=A	major_cov=8/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/8
RA	3031	.	1	653757	0	A	G	consensus_score=191.7	frequency=1	major_base=G	major_cov=32/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/35
RA	3032	.	1	656163	0	T	C	bias_e_value=2102720	bias_p_value=1	consensus_score=277.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999176	major_base=C	major_cov=47/51	major_frequency=9.899e-01	minor_base=T	minor_cov=0/1	new_cov=47/51	polymorphism_frequency=9.899e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=47/52
RA	3033	.	1	658122	0	T	C	bias_e_value=1572000	bias_p_value=0.747601	consensus_score=304.5	fisher_strand_p_value=0.495244	frequency=1	ks_quality_p_value=0.767131	major_base=C	major_cov=50/50	major_frequency=9.804e-01	minor_base=A	minor_cov=2/0	new_cov=50/50	polymorphism_frequency=9.804e-01	polymorphism_score=-2.2	prediction=consensus	ref_cov=0/0	total_cov=52/50
RA	3034	.	1	658677	0	A	G	consensus_score=181.5	frequency=1	major_base=G	major_cov=29/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/35
RA	3035	.	1	659806	0	T	C	consensus_score=175.7	frequency=1	major_base=C	major_cov=29/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/30
RA	3036	.	1	659972	0	G	T	consensus_score=284.7	frequency=1	major_base=T	major_cov=52/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/45
RA	3037	.	1	660797	0	G	A	bias_e_value=0.139085	bias_p_value=6.61451e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=33.0	fisher_strand_p_value=3.21803e-09	frequency=4.375e-01	ks_quality_p_value=1	major_base=G	major_cov=5/22	major_frequency=5.625e-01	minor_base=A	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=4.375e-01	polymorphism_score=21.6	prediction=polymorphism	ref_cov=5/22	total_cov=26/22
RA	3038	.	1	663209	0	G	T	bias_e_value=1726350	bias_p_value=0.821009	consensus_score=239.9	fisher_strand_p_value=0.46988	frequency=1	ks_quality_p_value=0.989477	major_base=T	major_cov=44/38	major_frequency=9.880e-01	minor_base=G	minor_cov=0/1	new_cov=44/38	polymorphism_frequency=9.880e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=0/1	total_cov=44/39
RA	3039	.	1	663621	0	A	G	consensus_score=199.9	frequency=1	major_base=G	major_cov=25/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/44
RA	3040	.	1	664438	0	G	A	consensus_score=216.9	frequency=1	major_base=A	major_cov=34/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/38
RA	3041	.	1	664442	0	C	T	consensus_score=213.3	frequency=1	major_base=T	major_cov=33/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/38
RA	3042	.	1	666223	0	G	T	bias_e_value=0.178651	bias_p_value=8.49619e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=146.1	fisher_strand_p_value=4.32129e-09	frequency=2.090e-01	ks_quality_p_value=0.968952	major_base=G	major_cov=48/5	major_frequency=7.910e-01	minor_base=T	minor_cov=1/13	new_cov=1/13	polymorphism_frequency=2.090e-01	polymorphism_score=14.0	prediction=polymorphism	ref_cov=48/5	total_cov=49/19
RA	3043	.	1	666327	0	G	A	consensus_score=210.6	frequency=1	major_base=A	major_cov=48/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/24
RA	3044	.	1	666739	0	C	T	consensus_score=229.9	frequency=1	major_base=T	major_cov=36/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/44
RA	3045	.	1	666877	0	C	T	bias_e_value=0.00813284	bias_p_value=3.86777e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=91.7	fisher_strand_p_value=1.64384e-10	frequency=3.043e-01	ks_quality_p_value=1	major_base=C	major_cov=10/38	major_frequency=6.957e-01	minor_base=T	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=3.043e-01	polymorphism_score=13.2	prediction=polymorphism	ref_cov=10/38	total_cov=31/38
RA	3046	.	1	667383	0	A	G	consensus_score=262.6	frequency=1	major_base=G	major_cov=57/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/36
RA	3047	.	1	674743	0	T	C	consensus_score=212.8	frequency=1	major_base=C	major_cov=38/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/36
RA	3048	.	1	674950	0	C	.	bias_e_value=2102710	bias_p_value=0.999996	consensus_score=305.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.997159	major_base=.	major_cov=37/37	major_frequency=9.737e-01	minor_base=T	minor_cov=1/1	new_cov=37/37	polymorphism_frequency=9.737e-01	polymorphism_score=1.2	prediction=consensus	ref_cov=0/0	total_cov=38/38
RA	3049	.	1	675002	0	C	A	bias_e_value=2099520	bias_p_value=0.99848	consensus_score=268.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.945369	major_base=A	major_cov=44/45	major_frequency=9.889e-01	minor_base=.	minor_cov=0/1	new_cov=44/45	polymorphism_frequency=9.889e-01	polymorphism_score=-3.5	prediction=consensus	ref_cov=0/0	total_cov=44/46
RA	3050	.	1	675615	0	T	C	consensus_score=208.1	frequency=1	major_base=C	major_cov=36/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/33
RA	3051	.	1	676935	0	T	C	consensus_score=184.4	frequency=1	major_base=C	major_cov=27/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/34
RA	3052	.	1	677517	0	T	G	consensus_score=216.3	frequency=1	major_base=G	major_cov=41/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/32
RA	3053	.	1	679116	0	C	T	consensus_score=82.8	frequency=1	major_base=T	major_cov=17/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/13
RA	3054	.	1	679814	0	C	T	consensus_score=267.6	frequency=1	major_base=T	major_cov=55/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/39
RA	3055	.	1	682009	0	T	C	consensus_score=282.2	frequency=1	major_base=C	major_cov=57/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/39
RA	3056	.	1	684269	0	T	C	consensus_score=191.1	frequency=1	major_base=C	major_cov=35/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/33
RA	3057	.	1	686694	0	T	C	consensus_score=232.5	frequency=1	major_base=C	major_cov=40/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/41
RA	3058	.	1	688942	0	T	.	consensus_score=348.2	frequency=1	major_base=.	major_cov=35/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/46
RA	3059	.	1	691925	0	A	.	consensus_score=374.8	frequency=1	major_base=.	major_cov=42/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/46
RA	3060	.	1	693210	0	T	G	consensus_score=272.5	frequency=1	major_base=G	major_cov=46/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/49
RA	3061	.	1	693458	0	A	C	bias_e_value=0.00138102	bias_p_value=6.56779e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=131.9	fisher_strand_p_value=2.58803e-11	frequency=3.425e-01	ks_quality_p_value=1	major_base=A	major_cov=37/11	major_frequency=6.575e-01	minor_base=C	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=3.425e-01	polymorphism_score=10.6	prediction=polymorphism	ref_cov=37/11	total_cov=37/36
RA	3062	.	1	694080	0	G	A	consensus_score=214.6	frequency=1	major_base=A	major_cov=41/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/35
RA	3063	.	1	696691	0	A	G	consensus_score=287.6	frequency=1	major_base=G	major_cov=46/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/52
RA	3064	.	1	697400	0	G	A	consensus_score=257.7	frequency=1	major_base=A	major_cov=52/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/37
RA	3065	.	1	698428	0	G	A	consensus_score=255.1	frequency=1	major_base=A	major_cov=48/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/40
RA	3066	.	1	699394	0	T	C	consensus_score=323.5	frequency=1	major_base=C	major_cov=52/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/61
RA	3067	.	1	703123	0	A	G	consensus_score=256.7	frequency=1	major_base=G	major_cov=45/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/43
RA	3068	.	1	703356	0	T	C	consensus_score=314.5	frequency=1	major_base=C	major_cov=54/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/54
RA	3069	.	1	703376	0	G	A	bias_e_value=2102720	bias_p_value=1	consensus_score=350.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999855	major_base=A	major_cov=53/64	major_frequency=9.915e-01	minor_base=G	minor_cov=0/1	new_cov=53/64	polymorphism_frequency=9.915e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=53/65
RA	3070	.	1	703499	0	C	T	consensus_score=302.3	frequency=1	major_base=T	major_cov=39/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/66
RA	3071	.	1	704998	0	C	A	consensus_score=337.5	frequency=1	major_base=A	major_cov=62/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/54
RA	3072	.	1	705646	0	T	C	consensus_score=186.1	frequency=1	major_base=C	major_cov=34/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/28
RA	3073	.	1	707381	0	T	C	consensus_score=345.6	frequency=1	major_base=C	major_cov=67/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=67/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/46
RA	3074	.	1	707424	0	A	G	consensus_score=299.3	frequency=1	major_base=G	major_cov=67/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=67/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/41
RA	3075	.	1	708975	0	T	C	consensus_score=365.6	frequency=1	major_base=C	major_cov=55/70	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/70	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/70
RA	3076	.	1	714653	0	C	T	consensus_score=221.5	frequency=1	major_base=T	major_cov=44/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/33
RA	3077	.	1	715798	0	A	G	consensus_score=267.3	frequency=1	major_base=G	major_cov=42/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/49
RA	3078	.	1	718032	0	C	T	consensus_score=275.4	frequency=1	major_base=T	major_cov=49/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/45
RA	3079	.	1	718373	1	.	T	consensus_score=208.2	frequency=1	major_base=T	major_cov=26/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/44
RA	3080	.	1	720011	0	T	C	consensus_score=229.4	frequency=1	major_base=C	major_cov=35/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/43
RA	3081	.	1	720396	0	A	G	consensus_score=301.3	frequency=1	major_base=G	major_cov=57/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/42
RA	3082	.	1	720644	0	A	C	consensus_score=335.6	frequency=1	major_base=C	major_cov=54/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/60
RA	3083	.	1	722088	0	T	G	bias_e_value=0.00515804	bias_p_value=2.45303e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=124.3	fisher_strand_p_value=1.02192e-10	frequency=3.452e-01	ks_quality_p_value=1	major_base=T	major_cov=17/38	major_frequency=6.548e-01	minor_base=G	minor_cov=29/0	new_cov=29/0	polymorphism_frequency=3.452e-01	polymorphism_score=21.3	prediction=polymorphism	ref_cov=17/38	total_cov=51/38
RA	3084	.	1	722669	0	C	T	consensus_score=126.1	frequency=1	major_base=T	major_cov=17/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/26
RA	3085	.	1	722739	0	G	C	consensus_score=162.9	frequency=1	major_base=C	major_cov=25/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/29
RA	3086	.	1	722755	0	C	T	consensus_score=171.6	frequency=1	major_base=T	major_cov=23/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/34
RA	3087	.	1	723275	0	C	T	consensus_score=369.0	frequency=1	major_base=T	major_cov=61/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/60
RA	3088	.	1	724746	0	G	T	consensus_score=270.8	frequency=1	major_base=T	major_cov=41/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/55
RA	3089	.	1	726573	0	T	.	consensus_score=67.9	frequency=1	major_base=.	major_cov=8/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/9
RA	3090	.	1	727242	0	T	C	consensus_score=205.4	frequency=1	major_base=C	major_cov=46/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/24
RA	3091	.	1	727259	0	G	A	bias_e_value=2102720	bias_p_value=1	consensus_score=190.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=43/25	major_frequency=9.855e-01	minor_base=G	minor_cov=1/0	new_cov=43/25	polymorphism_frequency=9.855e-01	polymorphism_score=-6.7	prediction=consensus	ref_cov=1/0	total_cov=44/25
RA	3092	.	1	727277	0	C	A	consensus_score=203.5	frequency=1	major_base=A	major_cov=41/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/27
RA	3093	.	1	727287	0	A	G	consensus_score=208.3	frequency=1	major_base=G	major_cov=41/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/28
RA	3094	.	1	727299	0	A	G	consensus_score=186.2	frequency=1	major_base=G	major_cov=41/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/25
RA	3095	.	1	727320	0	C	T	consensus_score=143.6	frequency=1	major_base=T	major_cov=34/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/19
RA	3096	.	1	727322	0	G	A	consensus_score=151.1	frequency=1	major_base=A	major_cov=34/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/19
RA	3097	.	1	727323	0	G	T	consensus_score=150.9	frequency=1	major_base=T	major_cov=34/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/19
RA	3098	.	1	727327	0	A	G	consensus_score=159.7	frequency=1	major_base=G	major_cov=34/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/19
RA	3099	.	1	727329	0	T	G	consensus_score=159.3	frequency=1	major_base=G	major_cov=34/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/19
RA	3100	.	1	727332	0	G	A	consensus_score=151.8	frequency=1	major_base=A	major_cov=34/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/19
RA	3101	.	1	727338	0	C	T	consensus_score=195.6	frequency=1	major_base=T	major_cov=40/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/26
RA	3102	.	1	727341	0	A	G	consensus_score=196.4	frequency=1	major_base=G	major_cov=40/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/26
RA	3103	.	1	727358	0	C	T	consensus_score=209.7	frequency=1	major_base=T	major_cov=43/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/29
RA	3104	.	1	727380	0	T	C	consensus_score=228.6	frequency=1	major_base=C	major_cov=43/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/32
RA	3105	.	1	727449	0	G	A	consensus_score=202.1	frequency=1	major_base=A	major_cov=36/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/35
RA	3106	.	1	727453	0	T	C	consensus_score=203.1	frequency=1	major_base=C	major_cov=36/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/35
RA	3107	.	1	727456	0	C	T	consensus_score=202.5	frequency=1	major_base=T	major_cov=36/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/35
RA	3108	.	1	727479	0	C	T	consensus_score=198.4	frequency=1	major_base=T	major_cov=31/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/36
RA	3109	.	1	727500	0	A	G	consensus_score=187.2	frequency=1	major_base=G	major_cov=33/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/32
RA	3110	.	1	727503	0	C	T	consensus_score=185.7	frequency=1	major_base=T	major_cov=33/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/32
RA	3111	.	1	727515	0	C	G	consensus_score=199.7	frequency=1	major_base=G	major_cov=32/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/34
RA	3112	.	1	727531	0	T	C	consensus_score=209.4	frequency=1	major_base=C	major_cov=34/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/36
RA	3113	.	1	727554	0	T	C	consensus_score=210.6	frequency=1	major_base=C	major_cov=39/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/34
RA	3114	.	1	727558	0	G	A	consensus_score=219.2	frequency=1	major_base=A	major_cov=39/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/34
RA	3115	.	1	727623	0	G	A	consensus_score=236.9	frequency=1	major_base=A	major_cov=44/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/38
RA	3116	.	1	727684	0	T	G	consensus_score=200.6	frequency=1	major_base=G	major_cov=38/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/34
RA	3117	.	1	727691	0	T	A	consensus_score=202.5	frequency=1	major_base=A	major_cov=36/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/33
RA	3118	.	1	727713	0	T	A	bias_e_value=2102720	bias_p_value=1	consensus_score=198.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=35/36	major_frequency=9.861e-01	minor_base=C	minor_cov=0/1	new_cov=35/36	polymorphism_frequency=9.861e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/37
RA	3119	.	1	727743	0	C	T	consensus_score=186.1	frequency=1	major_base=T	major_cov=34/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/33
RA	3120	.	1	727749	0	T	.	bias_e_value=57205	bias_p_value=0.0272053	consensus_reject=FREQUENCY_CUTOFF	consensus_score=145.6	fisher_strand_p_value=0.00420366	frequency=2.388e-01	ks_quality_p_value=1	major_base=T	major_cov=31/20	major_frequency=7.612e-01	minor_base=.	minor_cov=3/13	new_cov=3/13	polymorphism_frequency=2.388e-01	polymorphism_score=41.5	prediction=polymorphism	ref_cov=31/20	total_cov=34/33
RA	3121	.	1	727750	0	T	.	bias_e_value=1891450	bias_p_value=0.899524	consensus_score=47.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.586646	major_base=.	major_cov=3/12	major_frequency=9.375e-01	minor_base=T	minor_cov=0/1	new_cov=3/12	polymorphism_frequency=9.375e-01	polymorphism_score=-2.5	prediction=consensus	ref_cov=0/1	total_cov=3/13
RA	3122	.	1	727751	0	A	.	bias_e_value=2102720	bias_p_value=1	consensus_score=48.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=.	major_cov=3/12	major_frequency=9.375e-01	minor_base=A	minor_cov=0/1	new_cov=3/12	polymorphism_frequency=9.375e-01	polymorphism_score=-3.3	prediction=consensus	ref_cov=0/1	total_cov=3/13
RA	3123	.	1	727754	0	T	.	consensus_score=260.7	frequency=1	major_base=.	major_cov=30/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/31
RA	3124	.	1	727755	0	T	.	consensus_score=260.7	frequency=1	major_base=.	major_cov=30/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/31
RA	3125	.	1	727763	0	C	T	consensus_score=146.1	frequency=1	major_base=T	major_cov=24/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/30
RA	3126	.	1	727768	0	A	G	consensus_score=176.1	frequency=1	major_base=G	major_cov=28/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/31
RA	3127	.	1	727773	0	C	T	consensus_score=166.6	frequency=1	major_base=T	major_cov=28/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/31
RA	3128	.	1	727785	0	A	G	consensus_score=155.7	frequency=1	major_base=G	major_cov=25/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/30
RA	3129	.	1	727801	0	T	C	consensus_score=123.0	frequency=1	major_base=C	major_cov=20/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/28
RA	3130	.	1	727806	0	A	G	consensus_score=133.2	frequency=1	major_base=G	major_cov=20/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/28
RA	3131	.	1	727808	0	G	A	consensus_score=138.3	frequency=1	major_base=A	major_cov=20/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/28
RA	3132	.	1	727817	0	C	A	consensus_score=134.3	frequency=1	major_base=A	major_cov=21/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/28
RA	3133	.	1	727865	0	G	A	consensus_score=79.8	frequency=1	major_base=A	major_cov=18/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/17
RA	3134	.	1	727894	0	C	T	consensus_score=135.9	frequency=1	major_base=T	major_cov=28/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/18
RA	3135	.	1	727897	0	G	C	consensus_score=130.4	frequency=1	major_base=C	major_cov=28/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/18
RA	3136	.	1	727927	0	C	T	consensus_score=135.7	frequency=1	major_base=T	major_cov=29/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/19
RA	3137	.	1	727928	0	A	G	consensus_score=144.8	frequency=1	major_base=G	major_cov=29/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/19
RA	3138	.	1	727935	1	.	G	consensus_score=126.2	frequency=1	major_base=G	major_cov=29/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/16
RA	3139	.	1	727940	0	T	.	consensus_score=186.9	frequency=1	major_base=.	major_cov=29/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/16
RA	3140	.	1	727941	0	T	C	consensus_score=128.0	frequency=1	major_base=C	major_cov=29/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/16
RA	3141	.	1	727960	0	C	T	consensus_score=177.5	frequency=1	major_base=T	major_cov=47/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/15
RA	3142	.	1	727970	0	C	A	consensus_score=180.9	frequency=1	major_base=A	major_cov=48/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/15
RA	3143	.	1	727986	0	T	C	consensus_score=186.8	frequency=1	major_base=C	major_cov=46/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/19
RA	3144	.	1	728020	0	A	G	consensus_score=211.5	frequency=1	major_base=G	major_cov=48/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/20
RA	3145	.	1	728038	0	G	A	consensus_score=195.2	frequency=1	major_base=A	major_cov=47/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/23
RA	3146	.	1	728042	0	A	G	consensus_score=217.3	frequency=1	major_base=G	major_cov=47/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/23
RA	3147	.	1	728075	0	C	T	consensus_score=204.9	frequency=1	major_base=T	major_cov=46/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/25
RA	3148	.	1	728092	0	A	G	consensus_score=207.8	frequency=1	major_base=G	major_cov=44/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/26
RA	3149	.	1	728116	0	T	C	consensus_score=177.2	frequency=1	major_base=C	major_cov=37/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/26
RA	3150	.	1	728117	0	A	G	consensus_score=177.5	frequency=1	major_base=G	major_cov=37/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/26
RA	3151	.	1	728128	0	C	T	consensus_score=191.3	frequency=1	major_base=T	major_cov=38/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/26
RA	3152	.	1	728143	0	G	C	consensus_score=189.6	frequency=1	major_base=C	major_cov=38/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/26
RA	3153	.	1	728144	0	C	T	consensus_score=185.6	frequency=1	major_base=T	major_cov=38/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/26
RA	3154	.	1	728174	0	T	G	consensus_score=194.5	frequency=1	major_base=G	major_cov=37/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/29
RA	3155	.	1	728192	0	G	C	bias_e_value=2102720	bias_p_value=1	consensus_score=171.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=32/27	major_frequency=9.833e-01	minor_base=A	minor_cov=1/0	new_cov=32/27	polymorphism_frequency=9.833e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/27
RA	3156	.	1	728194	0	G	A	bias_e_value=2102720	bias_p_value=1	consensus_score=168.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999435	major_base=A	major_cov=32/27	major_frequency=9.833e-01	minor_base=T	minor_cov=1/0	new_cov=32/27	polymorphism_frequency=9.833e-01	polymorphism_score=-5.7	prediction=consensus	ref_cov=0/0	total_cov=33/27
RA	3157	.	1	728203	0	T	C	consensus_score=154.6	frequency=1	major_base=C	major_cov=25/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/29
RA	3158	.	1	728218	0	T	G	consensus_score=153.0	frequency=1	major_base=G	major_cov=24/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/29
RA	3159	.	1	728314	0	C	T	consensus_score=270.9	frequency=1	major_base=T	major_cov=42/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/48
RA	3160	.	1	728326	0	T	C	consensus_score=257.3	frequency=1	major_base=C	major_cov=43/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/45
RA	3161	.	1	728338	0	C	T	bias_e_value=1745880	bias_p_value=0.830296	consensus_score=256.0	fisher_strand_p_value=0.477273	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=41/46	major_frequency=9.886e-01	minor_base=C	minor_cov=1/0	new_cov=41/46	polymorphism_frequency=9.886e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=42/46
RA	3162	.	1	728347	0	G	T	consensus_score=252.3	frequency=1	major_base=T	major_cov=41/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/47
RA	3163	.	1	728362	0	C	T	bias_e_value=645109	bias_p_value=0.306798	consensus_score=228.7	fisher_strand_p_value=0.0900343	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=37/48	major_frequency=9.659e-01	minor_base=G	minor_cov=3/0	new_cov=37/48	polymorphism_frequency=9.659e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/48
RA	3164	.	1	728374	0	T	C	consensus_score=262.2	frequency=1	major_base=C	major_cov=40/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/51
RA	3165	.	1	728387	0	G	A	consensus_score=266.1	frequency=1	major_base=A	major_cov=41/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/50
RA	3166	.	1	728392	0	A	G	consensus_score=268.1	frequency=1	major_base=G	major_cov=41/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/51
RA	3167	.	1	728476	0	C	T	bias_e_value=1689390	bias_p_value=0.80343	consensus_score=185.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.442688	major_base=T	major_cov=27/43	major_frequency=9.859e-01	minor_base=A	minor_cov=0/1	new_cov=27/43	polymorphism_frequency=9.859e-01	polymorphism_score=-3.6	prediction=consensus	ref_cov=0/0	total_cov=27/44
RA	3168	.	1	728506	0	C	T	consensus_score=149.0	frequency=1	major_base=T	major_cov=24/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/28
RA	3169	.	1	728515	0	C	T	consensus_score=126.8	frequency=1	major_base=T	major_cov=24/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/22
RA	3170	.	1	728520	0	T	C	consensus_score=112.2	frequency=1	major_base=C	major_cov=21/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/18
RA	3171	.	1	728533	0	G	A	consensus_score=115.4	frequency=1	major_base=A	major_cov=25/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/16
RA	3172	.	1	728547	0	G	C	consensus_score=104.7	frequency=1	major_base=C	major_cov=23/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/12
RA	3173	.	1	728548	0	C	T	consensus_score=96.3	frequency=1	major_base=T	major_cov=23/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/12
RA	3174	.	1	728561	0	C	T	consensus_score=107.9	frequency=1	major_base=T	major_cov=26/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/13
RA	3175	.	1	728569	0	C	T	consensus_score=99.2	frequency=1	major_base=T	major_cov=25/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/11
RA	3176	.	1	728572	0	T	C	consensus_score=106.8	frequency=1	major_base=C	major_cov=25/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/11
RA	3177	.	1	728573	0	G	A	consensus_score=98.7	frequency=1	major_base=A	major_cov=25/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/11
RA	3178	.	1	728578	0	C	T	consensus_score=132.8	frequency=1	major_base=T	major_cov=30/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/18
RA	3179	.	1	728598	0	G	A	consensus_score=144.9	frequency=1	major_base=A	major_cov=31/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/18
RA	3180	.	1	728609	0	T	C	consensus_score=148.7	frequency=1	major_base=C	major_cov=33/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/18
RA	3181	.	1	728611	0	C	T	consensus_score=144.2	frequency=1	major_base=T	major_cov=33/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/18
RA	3182	.	1	728635	0	G	A	consensus_score=156.5	frequency=1	major_base=A	major_cov=35/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/18
RA	3183	.	1	728647	0	T	C	consensus_score=159.4	frequency=1	major_base=C	major_cov=39/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/17
RA	3184	.	1	728652	0	T	C	consensus_score=156.0	frequency=1	major_base=C	major_cov=38/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/16
RA	3185	.	1	728653	0	G	A	consensus_score=151.7	frequency=1	major_base=A	major_cov=38/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/16
RA	3186	.	1	728665	0	C	T	consensus_score=196.9	frequency=1	major_base=T	major_cov=46/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/21
RA	3187	.	1	728671	0	A	G	consensus_score=197.1	frequency=1	major_base=G	major_cov=46/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/20
RA	3188	.	1	728673	0	T	C	consensus_score=195.4	frequency=1	major_base=C	major_cov=46/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/20
RA	3189	.	1	728677	0	T	C	consensus_score=194.4	frequency=1	major_base=C	major_cov=46/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/20
RA	3190	.	1	728728	0	C	T	consensus_score=190.2	frequency=1	major_base=T	major_cov=44/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/21
RA	3191	.	1	728743	0	C	T	consensus_score=184.3	frequency=1	major_base=T	major_cov=42/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/21
RA	3192	.	1	728746	0	A	G	consensus_score=180.2	frequency=1	major_base=G	major_cov=42/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/21
RA	3193	.	1	728764	0	C	T	consensus_score=203.0	frequency=1	major_base=T	major_cov=45/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/24
RA	3194	.	1	728770	0	T	C	consensus_score=200.4	frequency=1	major_base=C	major_cov=44/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/24
RA	3195	.	1	728786	0	T	C	consensus_score=210.3	frequency=1	major_base=C	major_cov=48/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/25
RA	3196	.	1	728802	0	C	T	consensus_score=231.8	frequency=1	major_base=T	major_cov=49/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/30
RA	3197	.	1	728824	0	G	T	consensus_score=209.8	frequency=1	major_base=T	major_cov=47/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/25
RA	3198	.	1	728841	0	C	T	consensus_score=177.0	frequency=1	major_base=T	major_cov=42/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/22
RA	3199	.	1	728842	0	A	G	consensus_score=183.2	frequency=1	major_base=G	major_cov=42/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/22
RA	3200	.	1	728848	0	C	T	consensus_score=182.6	frequency=1	major_base=T	major_cov=42/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/22
RA	3201	.	1	728851	0	C	T	consensus_score=180.6	frequency=1	major_base=T	major_cov=42/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/22
RA	3202	.	1	728854	0	C	T	consensus_score=180.3	frequency=1	major_base=T	major_cov=42/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/22
RA	3203	.	1	728861	0	C	T	consensus_score=192.8	frequency=1	major_base=T	major_cov=45/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/22
RA	3204	.	1	728873	0	A	G	consensus_score=207.4	frequency=1	major_base=G	major_cov=45/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/29
RA	3205	.	1	728931	0	G	A	consensus_score=221.5	frequency=1	major_base=A	major_cov=46/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/31
RA	3206	.	1	728932	0	G	A	consensus_score=220.5	frequency=1	major_base=A	major_cov=46/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/31
RA	3207	.	1	728939	0	A	G	consensus_score=231.5	frequency=1	major_base=G	major_cov=46/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/31
RA	3208	.	1	728944	0	C	T	consensus_score=223.5	frequency=1	major_base=T	major_cov=46/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/31
RA	3209	.	1	728957	0	C	T	consensus_score=239.3	frequency=1	major_base=T	major_cov=49/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/34
RA	3210	.	1	728960	0	T	C	consensus_score=242.7	frequency=1	major_base=C	major_cov=49/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/34
RA	3211	.	1	728966	0	T	C	consensus_score=229.3	frequency=1	major_base=C	major_cov=46/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/34
RA	3212	.	1	728968	0	T	C	consensus_score=227.4	frequency=1	major_base=C	major_cov=46/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/34
RA	3213	.	1	728974	0	C	G	consensus_score=211.3	frequency=1	major_base=G	major_cov=42/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/32
RA	3214	.	1	728977	0	T	C	consensus_score=215.3	frequency=1	major_base=C	major_cov=42/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/32
RA	3215	.	1	728985	0	A	G	consensus_score=232.9	frequency=1	major_base=G	major_cov=43/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/34
RA	3216	.	1	728994	0	A	C	consensus_score=218.4	frequency=1	major_base=C	major_cov=38/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/37
RA	3217	.	1	729009	0	A	T	consensus_score=208.9	frequency=1	major_base=T	major_cov=35/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/39
RA	3218	.	1	729013	0	C	T	consensus_score=213.0	frequency=1	major_base=T	major_cov=35/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/39
RA	3219	.	1	729032	0	G	A	consensus_score=198.8	frequency=1	major_base=A	major_cov=30/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/39
RA	3220	.	1	729061	0	T	C	consensus_score=166.6	frequency=1	major_base=C	major_cov=25/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/33
RA	3221	.	1	729063	0	A	G	consensus_score=168.1	frequency=1	major_base=G	major_cov=25/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/33
RA	3222	.	1	729064	0	C	T	consensus_score=165.9	frequency=1	major_base=T	major_cov=25/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/33
RA	3223	.	1	729067	0	G	A	consensus_score=165.7	frequency=1	major_base=A	major_cov=25/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/33
RA	3224	.	1	729094	0	C	T	consensus_score=167.3	frequency=1	major_base=T	major_cov=25/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/31
RA	3225	.	1	729103	0	A	C	consensus_score=166.2	frequency=1	major_base=C	major_cov=25/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/31
RA	3226	.	1	729118	0	G	A	consensus_score=144.9	frequency=1	major_base=A	major_cov=24/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/27
RA	3227	.	1	729133	0	A	G	consensus_score=140.1	frequency=1	major_base=G	major_cov=23/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/24
RA	3228	.	1	729142	0	A	G	consensus_score=126.0	frequency=1	major_base=G	major_cov=21/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/22
RA	3229	.	1	729144	0	C	A	consensus_score=123.4	frequency=1	major_base=A	major_cov=21/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/22
RA	3230	.	1	729145	0	G	A	consensus_score=123.7	frequency=1	major_base=A	major_cov=21/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/22
RA	3231	.	1	729152	0	A	C	consensus_score=127.5	frequency=1	major_base=C	major_cov=21/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/22
RA	3232	.	1	729157	0	C	T	consensus_score=121.6	frequency=1	major_base=T	major_cov=21/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/22
RA	3233	.	1	729174	0	C	T	consensus_score=76.7	frequency=1	major_base=T	major_cov=15/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/13
RA	3234	.	1	729193	0	G	T	consensus_score=88.8	frequency=1	major_base=T	major_cov=17/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/15
RA	3235	.	1	729209	0	T	G	consensus_score=90.2	frequency=1	major_base=G	major_cov=20/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/12
RA	3236	.	1	729213	0	G	C	consensus_score=86.7	frequency=1	major_base=C	major_cov=19/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/12
RA	3237	.	1	729216	0	T	C	consensus_score=86.7	frequency=1	major_base=C	major_cov=19/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/12
RA	3238	.	1	729217	0	C	G	consensus_score=87.6	frequency=1	major_base=G	major_cov=19/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/12
RA	3239	.	1	729226	0	C	G	consensus_score=84.6	frequency=1	major_base=G	major_cov=19/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/11
RA	3240	.	1	729232	0	G	A	consensus_score=77.1	frequency=1	major_base=A	major_cov=18/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/10
RA	3241	.	1	729233	0	C	T	consensus_score=78.9	frequency=1	major_base=T	major_cov=18/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/10
RA	3242	.	1	729235	0	A	G	consensus_score=76.6	frequency=1	major_base=G	major_cov=18/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/10
RA	3243	.	1	729250	0	C	T	consensus_score=81.8	frequency=1	major_base=T	major_cov=15/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/14
RA	3244	.	1	729252	0	A	G	consensus_score=80.5	frequency=1	major_base=G	major_cov=15/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/14
RA	3245	.	1	729257	0	G	A	consensus_score=85.8	frequency=1	major_base=A	major_cov=16/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/15
RA	3246	.	1	729271	0	A	G	consensus_score=93.5	frequency=1	major_base=G	major_cov=15/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/18
RA	3247	.	1	729288	0	C	T	consensus_score=89.9	frequency=1	major_base=T	major_cov=13/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/19
RA	3248	.	1	729289	0	G	A	consensus_score=89.5	frequency=1	major_base=A	major_cov=13/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/19
RA	3249	.	1	729304	0	C	T	consensus_score=101.5	frequency=1	major_base=T	major_cov=15/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/21
RA	3250	.	1	729319	0	T	C	consensus_score=100.8	frequency=1	major_base=C	major_cov=14/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/23
RA	3251	.	1	729339	0	A	C	consensus_score=149.9	frequency=1	major_base=C	major_cov=24/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/26
RA	3252	.	1	729346	0	G	T	consensus_score=147.4	frequency=1	major_base=T	major_cov=24/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/26
RA	3253	.	1	729347	0	A	G	consensus_score=148.5	frequency=1	major_base=G	major_cov=24/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/26
RA	3254	.	1	729349	0	T	C	consensus_score=141.2	frequency=1	major_base=C	major_cov=24/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/26
RA	3255	.	1	729351	0	C	T	consensus_score=137.8	frequency=1	major_base=T	major_cov=24/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/26
RA	3256	.	1	729361	0	T	C	consensus_score=155.9	frequency=1	major_base=C	major_cov=26/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/26
RA	3257	.	1	729373	0	G	C	consensus_score=174.2	frequency=1	major_base=C	major_cov=32/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/28
RA	3258	.	1	729376	0	C	G	consensus_score=172.1	frequency=1	major_base=G	major_cov=32/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/28
RA	3259	.	1	729388	0	C	T	consensus_score=185.5	frequency=1	major_base=T	major_cov=34/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/31
RA	3260	.	1	729394	0	A	G	consensus_score=193.9	frequency=1	major_base=G	major_cov=36/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/31
RA	3261	.	1	729397	0	C	T	consensus_score=195.3	frequency=1	major_base=T	major_cov=36/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/31
RA	3262	.	1	729427	0	G	A	consensus_score=234.5	frequency=1	major_base=A	major_cov=40/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/40
RA	3263	.	1	729428	0	A	G	consensus_score=237.6	frequency=1	major_base=G	major_cov=40/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/40
RA	3264	.	1	729433	0	A	C	consensus_score=247.3	frequency=1	major_base=C	major_cov=42/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/44
RA	3265	.	1	729448	0	G	T	consensus_score=250.5	frequency=1	major_base=T	major_cov=39/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/44
RA	3266	.	1	729473	0	T	C	consensus_score=244.6	frequency=1	major_base=C	major_cov=41/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/42
RA	3267	.	1	729514	0	T	C	consensus_score=237.6	frequency=1	major_base=C	major_cov=40/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/41
RA	3268	.	1	729548	0	A	C	consensus_score=240.2	frequency=1	major_base=C	major_cov=40/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/42
RA	3269	.	1	729557	0	C	T	consensus_score=228.6	frequency=1	major_base=T	major_cov=39/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/41
RA	3270	.	1	729562	0	C	T	consensus_score=206.1	frequency=1	major_base=T	major_cov=32/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/37
RA	3271	.	1	729565	0	T	C	consensus_score=201.8	frequency=1	major_base=C	major_cov=32/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/37
RA	3272	.	1	729568	0	C	T	consensus_score=199.7	frequency=1	major_base=T	major_cov=32/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/37
RA	3273	.	1	729578	0	A	G	consensus_score=210.8	frequency=1	major_base=G	major_cov=33/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/39
RA	3274	.	1	729599	0	G	A	consensus_score=217.7	frequency=1	major_base=A	major_cov=33/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/42
RA	3275	.	1	729606	0	A	G	consensus_score=231.5	frequency=1	major_base=G	major_cov=35/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/44
RA	3276	.	1	729617	0	T	A	consensus_score=210.8	frequency=1	major_base=A	major_cov=30/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/41
RA	3277	.	1	729649	0	C	T	consensus_score=188.4	frequency=1	major_base=T	major_cov=28/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/38
RA	3278	.	1	729664	0	A	C	consensus_score=202.0	frequency=1	major_base=C	major_cov=31/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/37
RA	3279	.	1	729700	0	G	A	consensus_score=182.1	frequency=1	major_base=A	major_cov=32/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/33
RA	3280	.	1	729719	0	C	T	consensus_score=180.8	frequency=1	major_base=T	major_cov=28/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/36
RA	3281	.	1	729724	0	G	A	consensus_score=185.3	frequency=1	major_base=A	major_cov=28/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/37
RA	3282	.	1	729727	0	G	A	consensus_score=188.4	frequency=1	major_base=A	major_cov=28/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/37
RA	3283	.	1	729732	0	A	G	consensus_score=176.5	frequency=1	major_base=G	major_cov=26/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/35
RA	3284	.	1	729736	0	G	A	consensus_score=181.3	frequency=1	major_base=A	major_cov=26/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/35
RA	3285	.	1	729737	0	G	A	consensus_score=174.6	frequency=1	major_base=A	major_cov=26/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/35
RA	3286	.	1	729740	0	T	C	consensus_score=182.8	frequency=1	major_base=C	major_cov=26/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/35
RA	3287	.	1	729748	0	T	C	consensus_score=193.0	frequency=1	major_base=C	major_cov=29/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/35
RA	3288	.	1	729760	0	T	G	consensus_score=200.0	frequency=1	major_base=G	major_cov=37/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/33
RA	3289	.	1	729769	0	G	A	consensus_score=171.4	frequency=1	major_base=A	major_cov=34/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/26
RA	3290	.	1	729772	0	C	A	consensus_score=172.9	frequency=1	major_base=A	major_cov=34/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/26
RA	3291	.	1	729774	0	A	G	consensus_score=173.9	frequency=1	major_base=G	major_cov=34/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/26
RA	3292	.	1	729780	0	G	A	consensus_score=171.9	frequency=1	major_base=A	major_cov=34/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/26
RA	3293	.	1	729781	0	T	G	consensus_score=173.2	frequency=1	major_base=G	major_cov=34/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/26
RA	3294	.	1	729784	0	C	T	consensus_score=170.9	frequency=1	major_base=T	major_cov=34/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/26
RA	3295	.	1	729787	0	C	T	consensus_score=172.6	frequency=1	major_base=T	major_cov=34/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/26
RA	3296	.	1	729800	0	A	C	consensus_score=215.0	frequency=1	major_base=C	major_cov=37/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/36
RA	3297	.	1	729808	0	G	A	bias_e_value=2102720	bias_p_value=1	consensus_score=196.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=33/36	major_frequency=9.857e-01	minor_base=G	minor_cov=0/1	new_cov=33/36	polymorphism_frequency=9.857e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=33/37
RA	3298	.	1	729823	0	T	C	consensus_score=190.7	frequency=1	major_base=C	major_cov=33/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/35
RA	3299	.	1	729825	0	C	T	consensus_score=204.3	frequency=1	major_base=T	major_cov=33/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/35
RA	3300	.	1	729826	0	A	G	consensus_score=202.6	frequency=1	major_base=G	major_cov=33/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/35
RA	3301	.	1	729829	0	T	C	consensus_score=193.5	frequency=1	major_base=C	major_cov=33/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/35
RA	3302	.	1	729832	0	T	C	consensus_score=200.6	frequency=1	major_base=C	major_cov=33/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/35
RA	3303	.	1	729895	0	A	T	consensus_score=191.7	frequency=1	major_base=T	major_cov=37/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/29
RA	3304	.	1	729896	0	C	T	consensus_score=196.1	frequency=1	major_base=T	major_cov=37/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/29
RA	3305	.	1	729922	0	A	G	consensus_score=189.1	frequency=1	major_base=G	major_cov=35/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/29
RA	3306	.	1	729940	0	G	A	consensus_score=179.3	frequency=1	major_base=A	major_cov=35/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/26
RA	3307	.	1	729943	0	A	G	consensus_score=176.8	frequency=1	major_base=G	major_cov=35/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/26
RA	3308	.	1	729966	0	G	.	bias_e_value=2102720	bias_p_value=1	consensus_score=258.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=.	major_cov=35/27	major_frequency=9.841e-01	minor_base=G	minor_cov=1/0	new_cov=35/27	polymorphism_frequency=9.841e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=1/0	total_cov=36/27
RA	3309	.	1	729968	1	.	A	bias_e_value=2102720	bias_p_value=1	consensus_score=175.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=35/27	major_frequency=9.841e-01	minor_base=.	minor_cov=1/0	new_cov=35/27	polymorphism_frequency=9.841e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=1/0	total_cov=36/27
RA	3310	.	1	729994	0	C	T	consensus_score=168.8	frequency=1	major_base=T	major_cov=34/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/25
RA	3311	.	1	730024	0	G	A	consensus_score=156.7	frequency=1	major_base=A	major_cov=34/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/18
RA	3312	.	1	730030	0	G	C	consensus_score=152.3	frequency=1	major_base=C	major_cov=34/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/18
RA	3313	.	1	730076	0	G	A	consensus_score=161.4	frequency=1	major_base=A	major_cov=34/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/20
RA	3314	.	1	730087	0	A	G	consensus_score=148.4	frequency=1	major_base=G	major_cov=33/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/19
RA	3315	.	1	730108	0	A	G	consensus_score=171.0	frequency=1	major_base=G	major_cov=37/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/22
RA	3316	.	1	730114	0	A	G	consensus_score=182.1	frequency=1	major_base=G	major_cov=40/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/24
RA	3317	.	1	730120	0	C	T	consensus_score=175.0	frequency=1	major_base=T	major_cov=37/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/23
RA	3318	.	1	730126	0	G	A	consensus_score=170.8	frequency=1	major_base=A	major_cov=34/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/23
RA	3319	.	1	730134	0	G	A	consensus_score=171.8	frequency=1	major_base=A	major_cov=34/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/26
RA	3320	.	1	730138	0	A	G	consensus_score=160.5	frequency=1	major_base=G	major_cov=31/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/26
RA	3321	.	1	730155	0	A	G	consensus_score=199.4	frequency=1	major_base=G	major_cov=36/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/33
RA	3322	.	1	730162	0	G	A	consensus_score=205.7	frequency=1	major_base=A	major_cov=35/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/34
RA	3323	.	1	730177	0	T	C	consensus_score=209.7	frequency=1	major_base=C	major_cov=35/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/35
RA	3324	.	1	730181	0	C	T	consensus_score=206.1	frequency=1	major_base=T	major_cov=34/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/35
RA	3325	.	1	730192	0	G	A	consensus_score=202.4	frequency=1	major_base=A	major_cov=36/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/34
RA	3326	.	1	730210	0	G	A	consensus_score=214.5	frequency=1	major_base=A	major_cov=33/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/40
RA	3327	.	1	730218	0	T	C	consensus_score=199.6	frequency=1	major_base=C	major_cov=31/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/39
RA	3328	.	1	730224	0	C	G	consensus_score=196.4	frequency=1	major_base=G	major_cov=30/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/38
RA	3329	.	1	730250	0	A	G	consensus_score=199.7	frequency=1	major_base=G	major_cov=31/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/37
RA	3330	.	1	730255	0	T	C	consensus_score=171.9	frequency=1	major_base=C	major_cov=24/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/37
RA	3331	.	1	730256	0	T	C	consensus_score=170.8	frequency=1	major_base=C	major_cov=24/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/37
RA	3332	.	1	730262	0	T	G	consensus_score=170.4	frequency=1	major_base=G	major_cov=24/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/37
RA	3333	.	1	730264	0	C	T	consensus_score=166.7	frequency=1	major_base=T	major_cov=24/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/37
RA	3334	.	1	730291	0	G	A	consensus_score=190.4	frequency=1	major_base=A	major_cov=27/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/40
RA	3335	.	1	730305	0	C	T	consensus_score=189.3	frequency=1	major_base=T	major_cov=28/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/39
RA	3336	.	1	730334	0	T	G	consensus_score=225.3	frequency=1	major_base=G	major_cov=32/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/43
RA	3337	.	1	730345	0	G	A	consensus_score=218.9	frequency=1	major_base=A	major_cov=31/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/43
RA	3338	.	1	730347	0	G	A	consensus_score=213.0	frequency=1	major_base=A	major_cov=31/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/43
RA	3339	.	1	730364	0	A	G	consensus_score=224.4	frequency=1	major_base=G	major_cov=30/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/46
RA	3340	.	1	730378	0	A	G	consensus_score=219.1	frequency=1	major_base=G	major_cov=34/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/40
RA	3341	.	1	730381	0	C	T	consensus_score=211.9	frequency=1	major_base=T	major_cov=34/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/40
RA	3342	.	1	730397	0	C	A	consensus_score=201.5	frequency=1	major_base=A	major_cov=33/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/37
RA	3343	.	1	730412	0	C	T	bias_e_value=1768770	bias_p_value=0.841182	consensus_score=181.5	fisher_strand_p_value=0.492308	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=31/33	major_frequency=9.697e-01	minor_base=C	minor_cov=2/0	new_cov=31/33	polymorphism_frequency=9.697e-01	polymorphism_score=NA	prediction=consensus	ref_cov=2/0	total_cov=33/33
RA	3344	.	1	730415	0	A	G	consensus_score=187.1	frequency=1	major_base=G	major_cov=33/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/33
RA	3345	.	1	730416	0	A	C	consensus_score=197.7	frequency=1	major_base=C	major_cov=33/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/33
RA	3346	.	1	730462	0	C	T	consensus_score=200.2	frequency=1	major_base=T	major_cov=31/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/39
RA	3347	.	1	730482	0	G	A	consensus_score=218.7	frequency=1	major_base=A	major_cov=33/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/43
RA	3348	.	1	730494	1	.	T	consensus_score=218.7	frequency=1	major_base=T	major_cov=30/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/44
RA	3349	.	1	730510	0	C	A	consensus_score=205.1	frequency=1	major_base=A	major_cov=31/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/40
RA	3350	.	1	730515	0	G	A	consensus_score=208.0	frequency=1	major_base=A	major_cov=32/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/40
RA	3351	.	1	730526	0	C	T	consensus_score=209.5	frequency=1	major_base=T	major_cov=32/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/41
RA	3352	.	1	730559	0	G	C	consensus_score=207.9	frequency=1	major_base=C	major_cov=25/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/44
RA	3353	.	1	730583	0	A	C	consensus_score=169.5	frequency=1	major_base=C	major_cov=22/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/37
RA	3354	.	1	730586	0	C	T	consensus_score=164.8	frequency=1	major_base=T	major_cov=22/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/37
RA	3355	.	1	730607	0	A	G	consensus_score=180.6	frequency=1	major_base=G	major_cov=25/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/39
RA	3356	.	1	730616	0	A	G	consensus_score=180.3	frequency=1	major_base=G	major_cov=23/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/41
RA	3357	.	1	730631	0	T	C	consensus_score=173.1	frequency=1	major_base=C	major_cov=20/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/42
RA	3358	.	1	730634	0	T	C	consensus_score=180.9	frequency=1	major_base=C	major_cov=20/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/42
RA	3359	.	1	730643	0	C	T	consensus_score=165.7	frequency=1	major_base=T	major_cov=21/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/40
RA	3360	.	1	730652	0	G	A	consensus_score=180.2	frequency=1	major_base=A	major_cov=22/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/42
RA	3361	.	1	730663	0	T	C	consensus_score=173.8	frequency=1	major_base=C	major_cov=22/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/42
RA	3362	.	1	730668	0	G	A	consensus_score=166.4	frequency=1	major_base=A	major_cov=20/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/40
RA	3363	.	1	730690	0	G	A	consensus_score=156.6	frequency=1	major_base=A	major_cov=20/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/37
RA	3364	.	1	730694	0	A	C	consensus_score=143.2	frequency=1	major_base=C	major_cov=20/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/34
RA	3365	.	1	730752	0	T	C	consensus_score=131.3	frequency=1	major_base=C	major_cov=25/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/33
RA	3366	.	1	730758	0	T	C	consensus_score=128.9	frequency=1	major_base=C	major_cov=24/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/34
RA	3367	.	1	730790	0	G	T	consensus_score=133.1	frequency=1	major_base=T	major_cov=28/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/35
RA	3368	.	1	730794	0	G	C	consensus_score=135.3	frequency=1	major_base=C	major_cov=28/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/35
RA	3369	.	1	730795	0	G	A	consensus_score=134.4	frequency=1	major_base=A	major_cov=28/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/35
RA	3370	.	1	730802	0	C	A	consensus_score=145.7	frequency=1	major_base=A	major_cov=29/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/38
RA	3371	.	1	730924	0	C	T	consensus_score=140.1	frequency=1	major_base=T	major_cov=29/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/31
RA	3372	.	1	730979	0	A	.	consensus_score=134.0	frequency=1	major_base=.	major_cov=22/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/21
RA	3373	.	1	731026	0	A	G	consensus_score=146.7	frequency=1	major_base=G	major_cov=29/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/27
RA	3374	.	1	731035	0	C	T	consensus_score=139.3	frequency=1	major_base=T	major_cov=27/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/24
RA	3375	.	1	731088	0	C	T	consensus_score=187.9	frequency=1	major_base=T	major_cov=34/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/31
RA	3376	.	1	731091	0	C	T	consensus_score=185.5	frequency=1	major_base=T	major_cov=34/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/31
RA	3377	.	1	731109	0	G	T	consensus_score=202.5	frequency=1	major_base=T	major_cov=38/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/32
RA	3378	.	1	731114	0	T	C	consensus_score=207.3	frequency=1	major_base=C	major_cov=38/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/33
RA	3379	.	1	731180	0	C	T	consensus_score=223.7	frequency=1	major_base=T	major_cov=38/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/40
RA	3380	.	1	731217	0	T	C	consensus_score=260.6	frequency=1	major_base=C	major_cov=45/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/48
RA	3381	.	1	731259	0	C	T	consensus_score=270.6	frequency=1	major_base=T	major_cov=44/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/49
RA	3382	.	1	731263	0	C	T	consensus_score=263.0	frequency=1	major_base=T	major_cov=42/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/49
RA	3383	.	1	731309	0	C	A	consensus_score=300.0	frequency=1	major_base=A	major_cov=45/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/58
RA	3384	.	1	731310	0	G	A	consensus_score=302.5	frequency=1	major_base=A	major_cov=45/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/58
RA	3385	.	1	731321	0	C	A	consensus_score=304.0	frequency=1	major_base=A	major_cov=46/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/59
RA	3386	.	1	731329	0	A	G	consensus_score=308.0	frequency=1	major_base=G	major_cov=45/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/59
RA	3387	.	1	731490	0	C	T	bias_e_value=1349350	bias_p_value=0.641718	consensus_score=208.2	fisher_strand_p_value=0.453333	frequency=1	ks_quality_p_value=0.626863	major_base=T	major_cov=33/41	major_frequency=9.867e-01	minor_base=C	minor_cov=1/0	new_cov=33/41	polymorphism_frequency=9.867e-01	polymorphism_score=-4.8	prediction=consensus	ref_cov=1/0	total_cov=34/41
RA	3388	.	1	731583	0	A	G	bias_e_value=1723640	bias_p_value=0.81972	consensus_score=210.5	fisher_strand_p_value=0.472222	frequency=1	ks_quality_p_value=0.981012	major_base=G	major_cov=38/33	major_frequency=9.861e-01	minor_base=A	minor_cov=0/1	new_cov=38/33	polymorphism_frequency=9.861e-01	polymorphism_score=-4.9	prediction=consensus	ref_cov=0/1	total_cov=38/34
RA	3389	.	1	731592	0	A	G	bias_e_value=1733730	bias_p_value=0.824519	consensus_score=224.1	fisher_strand_p_value=0.473684	frequency=1	ks_quality_p_value=0.991266	major_base=G	major_cov=40/35	major_frequency=9.868e-01	minor_base=A	minor_cov=0/1	new_cov=40/35	polymorphism_frequency=9.868e-01	polymorphism_score=-4.9	prediction=consensus	ref_cov=0/1	total_cov=40/36
RA	3390	.	1	731781	0	T	C	bias_e_value=1661220	bias_p_value=0.790032	consensus_score=250.0	fisher_strand_p_value=0.428571	frequency=1	ks_quality_p_value=0.995421	major_base=C	major_cov=48/35	major_frequency=9.881e-01	minor_base=T	minor_cov=0/1	new_cov=48/35	polymorphism_frequency=9.881e-01	polymorphism_score=-4.8	prediction=consensus	ref_cov=0/1	total_cov=48/36
RA	3391	.	1	732002	0	C	T	consensus_score=205.7	frequency=1	major_base=T	major_cov=39/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/30
RA	3392	.	1	732023	0	A	C	consensus_score=216.1	frequency=1	major_base=C	major_cov=39/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/33
RA	3393	.	1	732167	0	T	C	bias_e_value=1031290	bias_p_value=0.490453	consensus_score=304.3	fisher_strand_p_value=0.471698	frequency=1	ks_quality_p_value=0.383816	major_base=C	major_cov=56/49	major_frequency=9.906e-01	minor_base=T	minor_cov=0/1	new_cov=56/49	polymorphism_frequency=9.906e-01	polymorphism_score=-5.4	prediction=consensus	ref_cov=0/1	total_cov=56/50
RA	3394	.	1	732674	0	C	A	consensus_score=261.4	frequency=1	major_base=A	major_cov=49/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/44
RA	3395	.	1	733802	0	C	T	consensus_score=212.1	frequency=1	major_base=T	major_cov=28/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/46
RA	3396	.	1	734547	0	A	G	bias_e_value=1703610	bias_p_value=0.810192	consensus_score=237.0	fisher_strand_p_value=0.45122	frequency=1	ks_quality_p_value=0.999699	major_base=G	major_cov=36/45	major_frequency=9.878e-01	minor_base=A	minor_cov=1/0	new_cov=36/45	polymorphism_frequency=9.878e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=37/45
RA	3397	.	1	738209	0	G	A	consensus_score=325.3	frequency=1	major_base=A	major_cov=62/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/51
RA	3398	.	1	738522	0	C	G	consensus_score=290.4	frequency=1	major_base=G	major_cov=52/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/45
RA	3399	.	1	740629	0	A	C	consensus_score=315.2	frequency=1	major_base=C	major_cov=46/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/62
RA	3400	.	1	740634	0	T	C	consensus_score=316.0	frequency=1	major_base=C	major_cov=48/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/62
RA	3401	.	1	741281	0	T	C	consensus_score=214.5	frequency=1	major_base=C	major_cov=47/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/26
RA	3402	.	1	742252	0	A	G	consensus_score=173.3	frequency=1	major_base=G	major_cov=35/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/26
RA	3403	.	1	744213	0	A	C	consensus_score=296.6	frequency=1	major_base=C	major_cov=56/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/43
RA	3404	.	1	746183	0	A	G	consensus_score=213.5	frequency=1	major_base=G	major_cov=28/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/43
RA	3405	.	1	749149	0	G	A	consensus_score=286.5	frequency=1	major_base=A	major_cov=47/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/52
RA	3406	.	1	749864	0	C	T	consensus_score=307.7	frequency=1	major_base=T	major_cov=60/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/45
RA	3407	.	1	750343	0	A	C	consensus_score=282.6	frequency=1	major_base=C	major_cov=50/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/45
RA	3408	.	1	752812	0	A	G	consensus_score=286.9	frequency=1	major_base=G	major_cov=51/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/44
RA	3409	.	1	753324	0	A	G	consensus_score=293.3	frequency=1	major_base=G	major_cov=48/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/53
RA	3410	.	1	756043	0	G	A	bias_e_value=0.000275286	bias_p_value=1.30919e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=142.0	fisher_strand_p_value=4.83912e-12	frequency=2.439e-01	ks_quality_p_value=1	major_base=G	major_cov=10/52	major_frequency=7.561e-01	minor_base=A	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.439e-01	polymorphism_score=13.6	prediction=polymorphism	ref_cov=10/52	total_cov=30/52
RA	3411	.	1	756057	0	A	T	bias_e_value=0.0233758	bias_p_value=1.11169e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=182.2	fisher_strand_p_value=4.9574e-10	frequency=2.143e-01	ks_quality_p_value=1	major_base=A	major_cov=14/52	major_frequency=7.857e-01	minor_base=T	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.143e-01	polymorphism_score=12.2	prediction=polymorphism	ref_cov=14/52	total_cov=32/52
RA	3412	.	1	759595	0	A	G	consensus_score=262.7	frequency=1	major_base=G	major_cov=49/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/43
RA	3413	.	1	759678	0	A	G	consensus_score=245.9	frequency=1	major_base=G	major_cov=41/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/43
RA	3414	.	1	759715	0	C	T	consensus_score=256.4	frequency=1	major_base=T	major_cov=37/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/51
RA	3415	.	1	769066	0	G	A	consensus_score=185.5	frequency=1	major_base=A	major_cov=29/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/35
RA	3416	.	1	771525	0	T	C	consensus_score=139.3	frequency=1	major_base=C	major_cov=21/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/25
RA	3417	.	1	771946	0	G	A	consensus_score=282.2	frequency=1	major_base=A	major_cov=49/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/48
RA	3418	.	1	772098	0	T	C	consensus_score=348.1	frequency=1	major_base=C	major_cov=51/68	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/68	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/68
RA	3419	.	1	773408	0	C	T	consensus_score=253.9	frequency=1	major_base=T	major_cov=40/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/44
RA	3420	.	1	774887	0	A	G	bias_e_value=0.0138158	bias_p_value=6.57045e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=93.8	fisher_strand_p_value=2.85981e-10	frequency=2.836e-01	ks_quality_p_value=1	major_base=A	major_cov=9/39	major_frequency=7.164e-01	minor_base=G	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.836e-01	polymorphism_score=14.5	prediction=polymorphism	ref_cov=9/39	total_cov=28/39
RA	3421	.	1	774916	0	T	G	bias_e_value=0.00272239	bias_p_value=1.2947e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=124.5	fisher_strand_p_value=5.24795e-11	frequency=3.333e-01	ks_quality_p_value=1	major_base=T	major_cov=11/37	major_frequency=6.667e-01	minor_base=G	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=3.333e-01	polymorphism_score=14.7	prediction=polymorphism	ref_cov=11/37	total_cov=35/37
RA	3422	.	1	775301	0	A	G	consensus_score=321.3	frequency=1	major_base=G	major_cov=49/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/60
RA	3423	.	1	776474	0	C	T	consensus_score=384.4	frequency=1	major_base=T	major_cov=69/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=69/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=69/63
RA	3424	.	1	777105	0	C	T	consensus_score=265.3	frequency=1	major_base=T	major_cov=42/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/50
RA	3425	.	1	777427	0	A	G	consensus_score=255.9	frequency=1	major_base=G	major_cov=37/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/47
RA	3426	.	1	780114	0	G	A	consensus_score=274.5	frequency=1	major_base=A	major_cov=59/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/37
RA	3427	.	1	782371	1	.	A	bias_e_value=2102700	bias_p_value=0.999991	consensus_score=271.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.995846	major_base=A	major_cov=52/40	major_frequency=9.787e-01	minor_base=.	minor_cov=1/1	new_cov=52/40	polymorphism_frequency=9.787e-01	polymorphism_score=-0.8	prediction=consensus	ref_cov=1/1	total_cov=53/41
RA	3428	.	1	782728	0	A	G	consensus_score=245.1	frequency=1	major_base=G	major_cov=45/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/37
RA	3429	.	1	782961	0	T	C	consensus_score=298.4	frequency=1	major_base=C	major_cov=49/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/51
RA	3430	.	1	783342	0	T	C	consensus_score=285.8	frequency=1	major_base=C	major_cov=37/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/62
RA	3431	.	1	784143	0	G	A	consensus_score=201.0	frequency=1	major_base=A	major_cov=41/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/31
RA	3432	.	1	784355	0	C	T	consensus_score=245.5	frequency=1	major_base=T	major_cov=48/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/34
RA	3433	.	1	786430	0	C	G	consensus_score=224.8	frequency=1	major_base=G	major_cov=39/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/35
RA	3434	.	1	786633	1	.	T	consensus_score=218.1	frequency=1	major_base=T	major_cov=48/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/28
RA	3435	.	1	786698	0	A	G	consensus_score=208.1	frequency=1	major_base=G	major_cov=43/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/30
RA	3436	.	1	790219	0	A	G	consensus_score=272.3	frequency=1	major_base=G	major_cov=52/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/41
RA	3437	.	1	791022	0	A	G	consensus_score=281.4	frequency=1	major_base=G	major_cov=43/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/55
RA	3438	.	1	792538	0	T	G	consensus_score=296.6	frequency=1	major_base=G	major_cov=50/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/51
RA	3439	.	1	792735	0	C	A	consensus_score=218.3	frequency=1	major_base=A	major_cov=28/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/49
RA	3440	.	1	793277	0	T	G	consensus_score=144.5	frequency=1	major_base=G	major_cov=20/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/29
RA	3441	.	1	795324	0	C	T	consensus_score=201.5	frequency=1	major_base=T	major_cov=30/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/41
RA	3442	.	1	795497	0	G	A	consensus_score=141.8	frequency=1	major_base=A	major_cov=21/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/27
RA	3443	.	1	797590	0	G	T	bias_e_value=1741120	bias_p_value=0.828033	consensus_score=283.1	fisher_strand_p_value=0.474227	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=51/45	major_frequency=9.897e-01	minor_base=G	minor_cov=0/1	new_cov=51/45	polymorphism_frequency=9.897e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=51/46
RA	3444	.	1	802133	0	A	G	consensus_score=368.6	frequency=1	major_base=G	major_cov=65/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/64
RA	3445	.	1	804322	0	T	C	consensus_score=258.3	frequency=1	major_base=C	major_cov=47/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/43
RA	3446	.	1	804612	0	G	A	consensus_score=249.3	frequency=1	major_base=A	major_cov=45/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/38
RA	3447	.	1	807185	0	A	G	consensus_score=315.1	frequency=1	major_base=G	major_cov=46/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/62
RA	3448	.	1	810497	0	T	.	consensus_score=348.8	frequency=1	major_base=.	major_cov=44/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/37
RA	3449	.	1	810909	0	C	A	consensus_score=233.2	frequency=1	major_base=A	major_cov=39/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/43
RA	3450	.	1	811434	0	G	A	consensus_score=336.0	frequency=1	major_base=A	major_cov=63/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/54
RA	3451	.	1	812925	0	T	C	consensus_score=271.3	frequency=1	major_base=C	major_cov=49/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/46
RA	3452	.	1	813799	0	C	.	consensus_score=425.9	frequency=1	major_base=.	major_cov=51/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/49
RA	3453	.	1	814696	0	G	T	consensus_score=284.0	frequency=1	major_base=T	major_cov=44/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/54
RA	3454	.	1	815297	0	T	C	consensus_score=243.7	frequency=1	major_base=C	major_cov=59/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/25
RA	3455	.	1	818845	0	G	C	consensus_score=353.4	frequency=1	major_base=C	major_cov=53/68	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/68	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/68
RA	3456	.	1	821406	0	C	T	bias_e_value=2102720	bias_p_value=1	consensus_score=323.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=57/51	major_frequency=9.908e-01	minor_base=A	minor_cov=1/0	new_cov=57/51	polymorphism_frequency=9.908e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/51
RA	3457	.	1	822936	0	T	G	bias_e_value=2102720	bias_p_value=0.999999	consensus_score=235.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998796	major_base=G	major_cov=39/42	major_frequency=9.878e-01	minor_base=A	minor_cov=0/1	new_cov=39/42	polymorphism_frequency=9.878e-01	polymorphism_score=-5.2	prediction=consensus	ref_cov=0/0	total_cov=39/43
RA	3458	.	1	823397	0	T	C	consensus_score=366.7	frequency=1	major_base=C	major_cov=62/68	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/68	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/68
RA	3459	.	1	824506	0	A	G	consensus_score=334.7	frequency=1	major_base=G	major_cov=55/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/57
RA	3460	.	1	825460	0	A	G	consensus_score=319.9	frequency=1	major_base=G	major_cov=40/71	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/71	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/71
RA	3461	.	1	826130	0	A	G	consensus_score=242.0	frequency=1	major_base=G	major_cov=39/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/41
RA	3462	.	1	826245	0	T	C	consensus_score=228.6	frequency=1	major_base=C	major_cov=42/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/37
RA	3463	.	1	826671	0	C	T	bias_e_value=3.99304e-08	bias_p_value=1.89899e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=69.6	fisher_strand_p_value=5.44443e-16	frequency=3.827e-01	ks_quality_p_value=0.963963	major_base=C	major_cov=43/7	major_frequency=6.173e-01	minor_base=T	minor_cov=0/31	new_cov=0/31	polymorphism_frequency=3.827e-01	polymorphism_score=30.9	prediction=polymorphism	ref_cov=43/7	total_cov=43/38
RA	3464	.	1	830739	0	C	G	consensus_score=352.1	frequency=1	major_base=G	major_cov=55/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/61
RA	3465	.	1	833539	0	G	A	consensus_score=217.0	frequency=1	major_base=A	major_cov=31/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/44
RA	3466	.	1	833699	0	T	C	bias_e_value=2102720	bias_p_value=1	consensus_score=217.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999609	major_base=C	major_cov=43/28	major_frequency=9.861e-01	minor_base=A	minor_cov=1/0	new_cov=43/28	polymorphism_frequency=9.861e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/28
RA	3467	.	1	835379	0	C	T	bias_e_value=1733480	bias_p_value=0.824398	consensus_score=294.8	fisher_strand_p_value=0.469388	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=52/45	major_frequency=9.898e-01	minor_base=G	minor_cov=0/1	new_cov=52/45	polymorphism_frequency=9.898e-01	polymorphism_score=-5.5	prediction=consensus	ref_cov=0/0	total_cov=52/46
RA	3468	.	1	835900	0	A	G	consensus_score=188.3	frequency=1	major_base=G	major_cov=22/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/42
RA	3469	.	1	837146	0	G	A	consensus_score=304.4	frequency=1	major_base=A	major_cov=53/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/52
RA	3470	.	1	840208	0	G	A	consensus_score=250.7	frequency=1	major_base=A	major_cov=46/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/41
RA	3471	.	1	841927	0	C	T	consensus_score=226.0	frequency=1	major_base=T	major_cov=39/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/37
RA	3472	.	1	849991	0	T	C	consensus_score=232.8	frequency=1	major_base=C	major_cov=36/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/44
RA	3473	.	1	851588	0	G	A	consensus_score=290.4	frequency=1	major_base=A	major_cov=42/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/55
RA	3474	.	1	851736	0	C	T	consensus_score=250.7	frequency=1	major_base=T	major_cov=33/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/50
RA	3475	.	1	854529	0	A	C	consensus_score=289.7	frequency=1	major_base=C	major_cov=50/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/45
RA	3476	.	1	858385	0	T	C	consensus_score=229.0	frequency=1	major_base=C	major_cov=42/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/34
RA	3477	.	1	858722	0	A	G	consensus_score=196.4	frequency=1	major_base=G	major_cov=27/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/41
RA	3478	.	1	861458	0	A	C	consensus_score=283.8	frequency=1	major_base=C	major_cov=52/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/44
RA	3479	.	1	862433	0	T	C	consensus_score=242.6	frequency=1	major_base=C	major_cov=43/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/40
RA	3480	.	1	862720	0	G	T	consensus_score=169.6	frequency=1	major_base=T	major_cov=24/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/35
RA	3481	.	1	863867	0	C	T	consensus_score=201.8	frequency=1	major_base=T	major_cov=40/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/30
RA	3482	.	1	864239	0	A	C	consensus_score=135.2	frequency=1	major_base=C	major_cov=31/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/16
RA	3483	.	1	864370	0	G	A	consensus_score=196.5	frequency=1	major_base=A	major_cov=46/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/25
RA	3484	.	1	864462	0	T	C	consensus_score=208.8	frequency=1	major_base=C	major_cov=44/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/27
RA	3485	.	1	867229	0	C	T	consensus_score=187.4	frequency=1	major_base=T	major_cov=34/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/34
RA	3486	.	1	867230	0	C	T	consensus_score=190.4	frequency=1	major_base=T	major_cov=34/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/34
RA	3487	.	1	868410	0	A	G	consensus_score=163.9	frequency=1	major_base=G	major_cov=33/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/26
RA	3488	.	1	868480	0	G	A	consensus_score=180.2	frequency=1	major_base=A	major_cov=37/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/26
RA	3489	.	1	868543	0	C	T	consensus_score=171.4	frequency=1	major_base=T	major_cov=32/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/28
RA	3490	.	1	868687	0	C	T	consensus_score=161.7	frequency=1	major_base=T	major_cov=29/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/28
RA	3491	.	1	869783	0	A	G	bias_e_value=358623	bias_p_value=0.170552	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-3.5	deleted=1	fisher_strand_p_value=0.0405594	frequency=5.333e-01	ks_quality_p_value=1	major_base=G	major_cov=1/7	major_frequency=5.333e-01	minor_base=A	minor_cov=5/2	new_cov=1/7	polymorphism_frequency=5.333e-01	polymorphism_score=11.8	prediction=polymorphism	ref_cov=5/2	total_cov=6/9
RA	3492	.	1	869792	0	G	A	bias_e_value=97199.6	bias_p_value=0.0462256	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-3.1	deleted=1	fisher_strand_p_value=0.0152201	frequency=4.706e-01	ks_quality_p_value=0.520173	major_base=G	major_cov=7/2	major_frequency=5.294e-01	minor_base=A	minor_cov=1/7	new_cov=1/7	polymorphism_frequency=4.706e-01	polymorphism_score=14.1	prediction=polymorphism	ref_cov=7/2	total_cov=8/9
RA	3493	.	1	869801	0	C	T	bias_e_value=99888	bias_p_value=0.0475042	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-4.5	deleted=1	fisher_strand_p_value=0.00892219	frequency=4.762e-01	ks_quality_p_value=0.917062	major_base=C	major_cov=9/2	major_frequency=5.238e-01	minor_base=T	minor_cov=2/8	new_cov=2/8	polymorphism_frequency=4.762e-01	polymorphism_score=20.4	prediction=polymorphism	ref_cov=9/2	total_cov=11/10
RA	3494	.	1	869807	0	T	C	bias_e_value=2686.1	bias_p_value=0.00127744	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-3.7	deleted=1	fisher_strand_p_value=0.00892219	frequency=4.762e-01	ks_quality_p_value=0.0143727	major_base=T	major_cov=9/2	major_frequency=5.238e-01	minor_base=C	minor_cov=2/8	new_cov=2/8	polymorphism_frequency=4.762e-01	polymorphism_score=18.1	prediction=polymorphism	ref_cov=9/2	total_cov=11/10
RA	3495	.	1	869813	0	T	C	bias_e_value=38342.3	bias_p_value=0.0182346	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=3.4	fisher_strand_p_value=0.00343249	frequency=4.348e-01	ks_quality_p_value=0.765246	major_base=T	major_cov=11/2	major_frequency=5.652e-01	minor_base=C	minor_cov=2/8	new_cov=2/8	polymorphism_frequency=4.348e-01	polymorphism_score=17.3	prediction=polymorphism	ref_cov=11/2	total_cov=13/10
RA	3496	.	1	869822	0	C	A	bias_e_value=13906.2	bias_p_value=0.00661342	consensus_reject=FREQUENCY_CUTOFF	consensus_score=24.1	fisher_strand_p_value=0.00274073	frequency=3.793e-01	ks_quality_p_value=0.297462	major_base=C	major_cov=14/4	major_frequency=6.207e-01	minor_base=A	minor_cov=2/9	new_cov=2/9	polymorphism_frequency=3.793e-01	polymorphism_score=25.2	prediction=polymorphism	ref_cov=14/4	total_cov=16/13
RA	3497	.	1	869837	0	A	G	bias_e_value=178135	bias_p_value=0.0847164	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=6.8	fisher_strand_p_value=0.0166204	frequency=4.167e-01	ks_quality_p_value=1	major_base=A	major_cov=15/6	major_frequency=5.833e-01	minor_base=G	minor_cov=4/11	new_cov=4/11	polymorphism_frequency=4.167e-01	polymorphism_score=31.6	prediction=polymorphism	ref_cov=15/6	total_cov=19/17
RA	3498	.	1	869843	0	G	A	bias_e_value=86103.6	bias_p_value=0.0409487	consensus_reject=FREQUENCY_CUTOFF	consensus_score=21.3	fisher_strand_p_value=0.00727285	frequency=3.947e-01	ks_quality_p_value=0.940802	major_base=G	major_cov=17/6	major_frequency=6.053e-01	minor_base=A	minor_cov=4/11	new_cov=4/11	polymorphism_frequency=3.947e-01	polymorphism_score=29.3	prediction=polymorphism	ref_cov=17/6	total_cov=21/17
RA	3499	.	1	869852	0	A	G	bias_e_value=315722	bias_p_value=0.150149	consensus_reject=FREQUENCY_CUTOFF	consensus_score=14.4	fisher_strand_p_value=0.0355345	frequency=4.130e-01	ks_quality_p_value=0.966667	major_base=A	major_cov=19/8	major_frequency=5.870e-01	minor_base=G	minor_cov=7/12	new_cov=7/12	polymorphism_frequency=4.130e-01	polymorphism_score=41.3	prediction=polymorphism	ref_cov=19/8	total_cov=26/20
RA	3500	.	1	869861	0	G	C	bias_e_value=51930.8	bias_p_value=0.024697	consensus_reject=FREQUENCY_CUTOFF	consensus_score=33.7	fisher_strand_p_value=0.0234418	frequency=4.151e-01	ks_quality_p_value=0.159967	major_base=G	major_cov=22/9	major_frequency=5.849e-01	minor_base=C	minor_cov=8/14	new_cov=8/14	polymorphism_frequency=4.151e-01	polymorphism_score=72.8	prediction=polymorphism	ref_cov=22/9	total_cov=30/23
RA	3501	.	1	869867	0	A	T	bias_e_value=703380	bias_p_value=0.33451	consensus_reject=FREQUENCY_CUTOFF	consensus_score=42.2	fisher_strand_p_value=0.104619	frequency=4.286e-01	ks_quality_p_value=0.97357	major_base=A	major_cov=21/11	major_frequency=5.714e-01	minor_base=T	minor_cov=10/14	new_cov=10/14	polymorphism_frequency=4.286e-01	polymorphism_score=76.3	prediction=polymorphism	ref_cov=21/11	total_cov=31/25
RA	3502	.	1	869870	0	A	T	bias_e_value=664951	bias_p_value=0.316234	consensus_reject=FREQUENCY_CUTOFF	consensus_score=37.5	fisher_strand_p_value=0.104619	frequency=4.286e-01	ks_quality_p_value=0.898397	major_base=A	major_cov=21/11	major_frequency=5.714e-01	minor_base=T	minor_cov=10/14	new_cov=10/14	polymorphism_frequency=4.286e-01	polymorphism_score=79.1	prediction=polymorphism	ref_cov=21/11	total_cov=31/25
RA	3503	.	1	869876	0	A	C	bias_e_value=794895	bias_p_value=0.378032	consensus_reject=FREQUENCY_CUTOFF	consensus_score=24.2	fisher_strand_p_value=0.12498	frequency=4.516e-01	ks_quality_p_value=0.973784	major_base=A	major_cov=21/13	major_frequency=5.484e-01	minor_base=C	minor_cov=11/17	new_cov=11/17	polymorphism_frequency=4.516e-01	polymorphism_score=80.1	prediction=polymorphism	ref_cov=21/13	total_cov=32/30
RA	3504	.	1	869879	0	G	A	bias_e_value=1102900	bias_p_value=0.524511	consensus_reject=FREQUENCY_CUTOFF	consensus_score=26.5	fisher_strand_p_value=0.201634	frequency=4.516e-01	ks_quality_p_value=1	major_base=G	major_cov=20/14	major_frequency=5.484e-01	minor_base=A	minor_cov=11/17	new_cov=11/17	polymorphism_frequency=4.516e-01	polymorphism_score=57.0	prediction=polymorphism	ref_cov=20/14	total_cov=31/31
RA	3505	.	1	869885	0	G	A	bias_e_value=1150840	bias_p_value=0.547312	consensus_reject=FREQUENCY_CUTOFF	consensus_score=28.7	fisher_strand_p_value=0.216194	frequency=4.462e-01	ks_quality_p_value=1	major_base=G	major_cov=21/15	major_frequency=5.538e-01	minor_base=A	minor_cov=12/17	new_cov=12/17	polymorphism_frequency=4.462e-01	polymorphism_score=60.3	prediction=polymorphism	ref_cov=21/15	total_cov=33/32
RA	3506	.	1	869889	0	G	T	bias_e_value=1150820	bias_p_value=0.547302	consensus_reject=FREQUENCY_CUTOFF	consensus_score=22.2	fisher_strand_p_value=0.216194	frequency=5.538e-01	ks_quality_p_value=0.999971	major_base=T	major_cov=21/15	major_frequency=5.538e-01	minor_base=G	minor_cov=12/17	new_cov=21/15	polymorphism_frequency=5.538e-01	polymorphism_score=88.5	prediction=polymorphism	ref_cov=12/17	total_cov=33/32
RA	3507	.	1	869909	0	G	A	bias_e_value=420.027	bias_p_value=0.000199754	consensus_reject=FREQUENCY_CUTOFF	consensus_score=25.4	fisher_strand_p_value=0.183683	frequency=4.500e-01	ks_quality_p_value=9.05969e-05	major_base=G	major_cov=24/20	major_frequency=5.500e-01	minor_base=A	minor_cov=14/22	new_cov=14/22	polymorphism_frequency=4.500e-01	polymorphism_score=78.8	prediction=polymorphism	ref_cov=24/20	total_cov=38/42
RA	3508	.	1	869912	0	T	C	bias_e_value=1003970	bias_p_value=0.477465	consensus_reject=FREQUENCY_CUTOFF	consensus_score=25.7	fisher_strand_p_value=0.183683	frequency=4.500e-01	ks_quality_p_value=0.944766	major_base=T	major_cov=24/20	major_frequency=5.500e-01	minor_base=C	minor_cov=14/22	new_cov=14/22	polymorphism_frequency=4.500e-01	polymorphism_score=79.1	prediction=polymorphism	ref_cov=24/20	total_cov=38/42
RA	3509	.	1	869917	0	T	C	bias_e_value=1076700	bias_p_value=0.51205	consensus_reject=FREQUENCY_CUTOFF	consensus_score=17.7	fisher_strand_p_value=0.197777	frequency=4.598e-01	ks_quality_p_value=0.980625	major_base=T	major_cov=26/21	major_frequency=5.402e-01	minor_base=C	minor_cov=16/24	new_cov=16/24	polymorphism_frequency=4.598e-01	polymorphism_score=94.3	prediction=polymorphism	ref_cov=26/21	total_cov=42/45
RA	3510	.	1	869934	0	G	T	bias_e_value=510964	bias_p_value=0.243002	consensus_reject=FREQUENCY_CUTOFF	consensus_score=40.8	fisher_strand_p_value=0.105286	frequency=4.845e-01	ks_quality_p_value=0.618523	major_base=G	major_cov=29/21	major_frequency=5.155e-01	minor_base=T	minor_cov=19/28	new_cov=19/28	polymorphism_frequency=4.845e-01	polymorphism_score=135.1	prediction=polymorphism	ref_cov=29/21	total_cov=48/49
RA	3511	.	1	869947	0	T	C	bias_e_value=970754	bias_p_value=0.461666	consensus_reject=FREQUENCY_CUTOFF	consensus_score=11.0	fisher_strand_p_value=0.164649	frequency=4.950e-01	ks_quality_p_value=1	major_base=T	major_cov=28/23	major_frequency=5.050e-01	minor_base=C	minor_cov=20/30	new_cov=20/30	polymorphism_frequency=4.950e-01	polymorphism_score=114.2	prediction=polymorphism	ref_cov=28/23	total_cov=48/53
RA	3512	.	1	869950	0	A	T	bias_e_value=116184	bias_p_value=0.055254	consensus_reject=FREQUENCY_CUTOFF	consensus_score=33.3	fisher_strand_p_value=0.229152	frequency=5.051e-01	ks_quality_p_value=0.0428847	major_base=T	major_cov=20/30	major_frequency=5.051e-01	minor_base=A	minor_cov=26/23	new_cov=20/30	polymorphism_frequency=5.051e-01	polymorphism_score=169.9	prediction=polymorphism	ref_cov=26/23	total_cov=46/53
RA	3513	.	1	869963	0	A	G	bias_e_value=777368	bias_p_value=0.369696	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-5.0	fisher_strand_p_value=0.243432	frequency=5.143e-01	ks_quality_p_value=0.483816	major_base=G	major_cov=22/32	major_frequency=5.143e-01	minor_base=A	minor_cov=27/24	new_cov=22/32	polymorphism_frequency=5.143e-01	polymorphism_score=111.8	prediction=polymorphism	ref_cov=27/24	total_cov=49/56
RA	3514	.	1	869998	0	T	C	bias_e_value=903136	bias_p_value=0.429508	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=7.7	fisher_strand_p_value=0.344458	frequency=5.045e-01	ks_quality_p_value=0.42776	major_base=C	major_cov=26/30	major_frequency=5.045e-01	minor_base=T	minor_cov=31/24	new_cov=26/30	polymorphism_frequency=5.045e-01	polymorphism_score=127.0	prediction=polymorphism	ref_cov=31/24	total_cov=57/54
RA	3515	.	1	870003	0	C	T	bias_e_value=1975810	bias_p_value=0.939644	consensus_reject=FREQUENCY_CUTOFF	consensus_score=30.0	fisher_strand_p_value=0.695198	frequency=4.757e-01	ks_quality_p_value=0.968539	major_base=C	major_cov=30/24	major_frequency=5.243e-01	minor_base=T	minor_cov=25/24	new_cov=25/24	polymorphism_frequency=4.757e-01	polymorphism_score=105.4	prediction=polymorphism	ref_cov=30/24	total_cov=55/48
RA	3516	.	1	870006	0	C	T	bias_e_value=230687	bias_p_value=0.109709	consensus_reject=FREQUENCY_CUTOFF	consensus_score=29.9	fisher_strand_p_value=0.842573	frequency=4.706e-01	ks_quality_p_value=0.0272806	major_base=C	major_cov=30/24	major_frequency=5.294e-01	minor_base=T	minor_cov=25/23	new_cov=25/23	polymorphism_frequency=4.706e-01	polymorphism_score=107.4	prediction=polymorphism	ref_cov=30/24	total_cov=55/48
RA	3517	.	1	870007	0	C	T	bias_e_value=99921.3	bias_p_value=0.04752	consensus_reject=FREQUENCY_CUTOFF	consensus_score=27.0	fisher_strand_p_value=0.695198	frequency=4.757e-01	ks_quality_p_value=0.0117743	major_base=C	major_cov=30/24	major_frequency=5.243e-01	minor_base=T	minor_cov=25/24	new_cov=25/24	polymorphism_frequency=4.757e-01	polymorphism_score=109.1	prediction=polymorphism	ref_cov=30/24	total_cov=55/48
RA	3518	.	1	870011	1	.	T	bias_e_value=1.79443e-06	bias_p_value=8.53387e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=65.4	fisher_strand_p_value=0.695198	frequency=4.757e-01	ks_quality_p_value=3.80475e-14	major_base=.	major_cov=30/24	major_frequency=5.243e-01	minor_base=T	minor_cov=25/24	new_cov=25/24	polymorphism_frequency=4.757e-01	polymorphism_score=217.2	prediction=polymorphism	ref_cov=30/24	total_cov=55/48
RA	3519	.	1	870012	0	C	A	bias_e_value=3.84132e-05	bias_p_value=1.82683e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=46.8	fisher_strand_p_value=0.695198	frequency=4.757e-01	ks_quality_p_value=9.03129e-13	major_base=C	major_cov=30/24	major_frequency=5.243e-01	minor_base=A	minor_cov=25/24	new_cov=25/24	polymorphism_frequency=4.757e-01	polymorphism_score=141.3	prediction=polymorphism	ref_cov=30/24	total_cov=55/48
RA	3520	.	1	870013	0	G	T	bias_e_value=42.5259	bias_p_value=2.02242e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=48.5	fisher_strand_p_value=0.695198	frequency=4.757e-01	ks_quality_p_value=2.00886e-06	major_base=G	major_cov=30/24	major_frequency=5.243e-01	minor_base=T	minor_cov=25/24	new_cov=25/24	polymorphism_frequency=4.757e-01	polymorphism_score=138.4	prediction=polymorphism	ref_cov=30/24	total_cov=55/48
RA	3521	.	1	870016	0	G	A	bias_e_value=87399.5	bias_p_value=0.041565	consensus_reject=FREQUENCY_CUTOFF	consensus_score=28.0	fisher_strand_p_value=0.695198	frequency=4.757e-01	ks_quality_p_value=0.0100204	major_base=G	major_cov=30/24	major_frequency=5.243e-01	minor_base=A	minor_cov=25/24	new_cov=25/24	polymorphism_frequency=4.757e-01	polymorphism_score=107.2	prediction=polymorphism	ref_cov=30/24	total_cov=55/48
RA	3522	.	1	870026	1	.	T	bias_e_value=1687360	bias_p_value=0.802467	consensus_reject=FREQUENCY_CUTOFF	consensus_score=50.1	fisher_strand_p_value=0.441508	frequency=5.000e-01	ks_quality_p_value=1	major_base=.	major_cov=30/24	major_frequency=5.000e-01	minor_base=T	minor_cov=25/29	new_cov=25/29	polymorphism_frequency=5.000e-01	polymorphism_score=241.0	prediction=polymorphism	ref_cov=30/24	total_cov=55/53
RA	3523	.	1	870026	2	.	C	bias_e_value=1687360	bias_p_value=0.802467	consensus_reject=FREQUENCY_CUTOFF	consensus_score=65.8	fisher_strand_p_value=0.441508	frequency=5.000e-01	ks_quality_p_value=1	major_base=.	major_cov=30/24	major_frequency=5.000e-01	minor_base=C	minor_cov=25/29	new_cov=25/29	polymorphism_frequency=5.000e-01	polymorphism_score=277.0	prediction=polymorphism	ref_cov=30/24	total_cov=55/53
RA	3524	.	1	870115	0	T	.	bias_e_value=28822.4	bias_p_value=0.0137072	consensus_reject=FREQUENCY_CUTOFF	consensus_score=16.3	fisher_strand_p_value=0.277233	frequency=6.047e-01	ks_quality_p_value=0.00679705	major_base=.	major_cov=24/28	major_frequency=6.047e-01	minor_base=T	minor_cov=20/14	new_cov=24/28	polymorphism_frequency=6.047e-01	polymorphism_score=146.5	prediction=polymorphism	ref_cov=20/14	total_cov=44/42
RA	3525	.	1	870116	0	C	.	bias_e_value=604748	bias_p_value=0.287603	consensus_reject=FREQUENCY_CUTOFF	consensus_score=13.3	fisher_strand_p_value=0.277233	frequency=6.047e-01	ks_quality_p_value=0.296527	major_base=.	major_cov=24/28	major_frequency=6.047e-01	minor_base=C	minor_cov=20/14	new_cov=24/28	polymorphism_frequency=6.047e-01	polymorphism_score=162.8	prediction=polymorphism	ref_cov=20/14	total_cov=44/42
RA	3526	.	1	870474	0	A	C	consensus_score=137.5	frequency=1	major_base=C	major_cov=29/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/19
RA	3527	.	1	876153	0	C	A	consensus_score=273.9	frequency=1	major_base=A	major_cov=48/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/46
RA	3528	.	1	878687	0	G	A	consensus_score=288.0	frequency=1	major_base=A	major_cov=50/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/46
RA	3529	.	1	879065	0	A	G	consensus_score=127.7	frequency=1	major_base=G	major_cov=24/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/19
RA	3530	.	1	879657	0	G	T	consensus_score=229.2	frequency=1	major_base=T	major_cov=46/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/33
RA	3531	.	1	879943	0	G	A	consensus_score=217.5	frequency=1	major_base=A	major_cov=46/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/31
RA	3532	.	1	882742	0	A	G	consensus_score=145.8	frequency=1	major_base=G	major_cov=27/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/23
RA	3533	.	1	884089	0	T	C	consensus_score=219.7	frequency=1	major_base=C	major_cov=36/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/41
RA	3534	.	1	887745	0	T	G	bias_e_value=2102720	bias_p_value=1	consensus_score=210.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=38/34	major_frequency=9.863e-01	minor_base=T	minor_cov=1/0	new_cov=38/34	polymorphism_frequency=9.863e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=39/34
RA	3535	.	1	889271	0	A	C	bias_e_value=2.16216e-08	bias_p_value=1.02827e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=103.8	fisher_strand_p_value=2.79313e-16	frequency=4.267e-01	ks_quality_p_value=1	major_base=A	major_cov=38/5	major_frequency=5.733e-01	minor_base=C	minor_cov=0/32	new_cov=0/32	polymorphism_frequency=4.267e-01	polymorphism_score=11.7	prediction=polymorphism	ref_cov=38/5	total_cov=38/37
RA	3536	.	1	890968	0	G	T	consensus_score=286.6	frequency=1	major_base=T	major_cov=50/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/49
RA	3537	.	1	894964	0	T	C	consensus_score=298.5	frequency=1	major_base=C	major_cov=44/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/53
RA	3538	.	1	895637	0	G	A	consensus_score=212.4	frequency=1	major_base=A	major_cov=38/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/36
RA	3539	.	1	895638	0	G	A	consensus_score=211.4	frequency=1	major_base=A	major_cov=38/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/36
RA	3540	.	1	904900	0	T	G	consensus_score=286.4	frequency=1	major_base=G	major_cov=53/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/45
RA	3541	.	1	908454	0	C	G	consensus_score=185.6	frequency=1	major_base=G	major_cov=36/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/26
RA	3542	.	1	911362	0	A	G	consensus_score=280.9	frequency=1	major_base=G	major_cov=49/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/45
RA	3543	.	1	912184	0	T	A	consensus_score=143.5	frequency=1	major_base=A	major_cov=18/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/33
RA	3544	.	1	913150	0	A	G	consensus_score=194.6	frequency=1	major_base=G	major_cov=40/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/26
RA	3545	.	1	913941	0	G	A	consensus_score=265.5	frequency=1	major_base=A	major_cov=41/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/50
RA	3546	.	1	914047	0	G	A	consensus_score=203.8	frequency=1	major_base=A	major_cov=34/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/37
RA	3547	.	1	914343	0	C	T	consensus_score=212.0	frequency=1	major_base=T	major_cov=34/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/40
RA	3548	.	1	917916	0	T	C	consensus_score=33.0	frequency=1	major_base=C	major_cov=8/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/5
RA	3549	.	1	918831	0	G	A	consensus_score=56.1	frequency=1	major_base=A	major_cov=13/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/8
RA	3550	.	1	919198	0	A	G	consensus_score=119.1	frequency=1	major_base=G	major_cov=17/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/25
RA	3551	.	1	919371	0	T	C	consensus_score=27.4	frequency=1	major_base=C	major_cov=6/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/5
RA	3552	.	1	919692	0	G	T	consensus_score=28.5	frequency=1	major_base=T	major_cov=5/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/7
RA	3553	.	1	921092	0	C	T	consensus_score=92.1	frequency=1	major_base=T	major_cov=22/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/11
RA	3554	.	1	923224	0	G	A	consensus_score=34.3	frequency=1	major_base=A	major_cov=9/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/5
RA	3555	.	1	924784	0	T	G	consensus_score=194.1	frequency=1	major_base=G	major_cov=28/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/38
RA	3556	.	1	929166	0	T	C	consensus_score=169.0	frequency=1	major_base=C	major_cov=26/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/33
RA	3557	.	1	929622	0	G	A	bias_e_value=940.398	bias_p_value=0.00044723	consensus_reject=FREQUENCY_CUTOFF	consensus_score=106.6	fisher_strand_p_value=4.02138e-05	frequency=2.836e-01	ks_quality_p_value=1	major_base=G	major_cov=24/24	major_frequency=7.164e-01	minor_base=A	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=2.836e-01	polymorphism_score=12.7	prediction=polymorphism	ref_cov=24/24	total_cov=24/44
RA	3558	.	1	933075	0	T	C	consensus_score=179.0	frequency=1	major_base=C	major_cov=29/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/34
RA	3559	.	1	933585	0	T	G	consensus_score=232.1	frequency=1	major_base=G	major_cov=27/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/50
RA	3560	.	1	933685	0	A	G	consensus_score=116.3	frequency=1	major_base=G	major_cov=16/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/25
RA	3561	.	1	935810	0	A	G	bias_e_value=2102720	bias_p_value=1	consensus_score=203.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=31/41	major_frequency=9.863e-01	minor_base=T	minor_cov=0/1	new_cov=31/41	polymorphism_frequency=9.863e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/42
RA	3562	.	1	937456	0	T	.	consensus_score=299.4	frequency=1	major_base=.	major_cov=40/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/30
RA	3563	.	1	938857	0	T	G	consensus_score=205.6	frequency=1	major_base=G	major_cov=38/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/33
RA	3564	.	1	944280	0	G	A	bias_e_value=1552520	bias_p_value=0.738338	consensus_score=245.8	fisher_strand_p_value=0.372093	frequency=1	ks_quality_p_value=0.995632	major_base=A	major_cov=54/31	major_frequency=9.884e-01	minor_base=G	minor_cov=0/1	new_cov=54/31	polymorphism_frequency=9.884e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=54/32
RA	3565	.	1	945426	0	T	C	consensus_score=255.7	frequency=1	major_base=C	major_cov=42/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/47
RA	3566	.	1	948796	0	C	T	bias_e_value=838516	bias_p_value=0.398777	consensus_score=178.0	fisher_strand_p_value=0.131745	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=38/31	major_frequency=9.452e-01	minor_base=G	minor_cov=4/0	new_cov=38/31	polymorphism_frequency=9.452e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/31
RA	3567	.	1	949085	0	G	A	consensus_score=217.8	frequency=1	major_base=A	major_cov=40/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/36
RA	3568	.	1	952537	0	C	T	consensus_score=146.7	frequency=1	major_base=T	major_cov=21/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/29
RA	3569	.	1	952849	0	C	T	consensus_score=41.4	frequency=1	major_base=T	major_cov=10/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/6
RA	3570	.	1	952970	0	C	T	consensus_score=49.6	frequency=1	major_base=T	major_cov=13/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/6
RA	3571	.	1	953354	0	C	T	consensus_score=254.1	frequency=1	major_base=T	major_cov=48/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/39
RA	3572	.	1	954796	0	C	T	consensus_score=253.1	frequency=1	major_base=T	major_cov=57/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/39
RA	3573	.	1	954977	0	C	T	consensus_score=329.7	frequency=1	major_base=T	major_cov=60/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/49
RA	3574	.	1	955787	0	T	C	consensus_score=177.6	frequency=1	major_base=C	major_cov=35/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/26
RA	3575	.	1	956540	0	T	C	consensus_score=314.3	frequency=1	major_base=C	major_cov=52/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/50
RA	3576	.	1	957613	0	A	G	consensus_score=174.7	frequency=1	major_base=G	major_cov=32/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/26
RA	3577	.	1	958935	0	T	C	consensus_score=241.5	frequency=1	major_base=C	major_cov=41/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/42
RA	3578	.	1	959009	0	T	G	consensus_score=231.5	frequency=1	major_base=G	major_cov=44/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/38
RA	3579	.	1	959015	0	G	A	consensus_score=247.0	frequency=1	major_base=A	major_cov=44/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/39
RA	3580	.	1	962142	0	C	T	consensus_score=231.5	frequency=1	major_base=T	major_cov=38/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/42
RA	3581	.	1	964140	0	A	G	consensus_score=305.1	frequency=1	major_base=G	major_cov=61/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/45
RA	3582	.	1	966476	0	G	A	consensus_score=244.0	frequency=1	major_base=A	major_cov=50/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/35
RA	3583	.	1	966584	0	A	G	bias_e_value=2102720	bias_p_value=1	consensus_score=308.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=58/43	major_frequency=9.902e-01	minor_base=C	minor_cov=1/0	new_cov=58/43	polymorphism_frequency=9.902e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/43
RA	3584	.	1	966843	0	C	T	consensus_score=262.0	frequency=1	major_base=T	major_cov=43/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/44
RA	3585	.	1	969783	0	G	A	consensus_score=247.7	frequency=1	major_base=A	major_cov=43/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/43
RA	3586	.	1	969895	0	G	A	bias_e_value=2102720	bias_p_value=1	consensus_score=254.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.99975	major_base=A	major_cov=51/38	major_frequency=9.889e-01	minor_base=G	minor_cov=1/0	new_cov=51/38	polymorphism_frequency=9.889e-01	polymorphism_score=-4.9	prediction=consensus	ref_cov=1/0	total_cov=52/38
RA	3587	.	1	970208	0	A	T	consensus_score=314.0	frequency=1	major_base=T	major_cov=56/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/51
RA	3588	.	1	970864	0	C	A	consensus_score=230.0	frequency=1	major_base=A	major_cov=37/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/40
RA	3589	.	1	971187	0	G	T	consensus_score=270.1	frequency=1	major_base=T	major_cov=45/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/51
RA	3590	.	1	971726	0	A	.	consensus_score=392.9	frequency=1	major_base=.	major_cov=42/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/50
RA	3591	.	1	973440	0	A	G	consensus_score=209.8	frequency=1	major_base=G	major_cov=36/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/34
RA	3592	.	1	974582	0	G	A	bias_e_value=0.00216619	bias_p_value=1.03019e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=91.2	fisher_strand_p_value=4.13584e-11	frequency=3.065e-01	ks_quality_p_value=1	major_base=G	major_cov=6/37	major_frequency=6.935e-01	minor_base=A	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=3.065e-01	polymorphism_score=13.2	prediction=polymorphism	ref_cov=6/37	total_cov=26/37
RA	3593	.	1	974982	0	T	C	consensus_score=248.6	frequency=1	major_base=C	major_cov=48/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/35
RA	3594	.	1	980539	0	T	C	consensus_score=171.1	frequency=1	major_base=C	major_cov=33/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/26
RA	3595	.	1	981754	0	A	C	consensus_score=206.3	frequency=1	major_base=C	major_cov=34/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/37
RA	3596	.	1	984118	0	T	G	bias_e_value=1694920	bias_p_value=0.806063	consensus_score=234.9	fisher_strand_p_value=0.447059	frequency=1	ks_quality_p_value=0.997482	major_base=G	major_cov=37/47	major_frequency=9.882e-01	minor_base=C	minor_cov=1/0	new_cov=37/47	polymorphism_frequency=9.882e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/47
RA	3597	.	1	987317	0	T	G	consensus_score=358.9	frequency=1	major_base=G	major_cov=70/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=70/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=70/46
RA	3598	.	1	992448	0	A	G	consensus_score=191.8	frequency=1	major_base=G	major_cov=29/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/37
RA	3599	.	1	994208	0	G	A	consensus_score=222.3	frequency=1	major_base=A	major_cov=36/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/41
RA	3600	.	1	995088	0	C	T	consensus_score=254.8	frequency=1	major_base=T	major_cov=44/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/40
RA	3601	.	1	996301	0	T	C	consensus_score=211.0	frequency=1	major_base=C	major_cov=40/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/31
RA	3602	.	1	997507	0	G	A	consensus_score=272.2	frequency=1	major_base=A	major_cov=51/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/43
RA	3603	.	1	997702	0	A	G	consensus_score=288.8	frequency=1	major_base=G	major_cov=57/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/45
RA	3604	.	1	999677	0	C	A	consensus_score=335.3	frequency=1	major_base=A	major_cov=54/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/57
RA	3605	.	1	1001803	0	T	G	consensus_score=172.2	frequency=1	major_base=G	major_cov=33/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/28
RA	3606	.	1	1001842	0	G	A	consensus_score=171.4	frequency=1	major_base=A	major_cov=40/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/22
RA	3607	.	1	1001870	0	A	G	consensus_score=181.0	frequency=1	major_base=G	major_cov=42/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/22
RA	3608	.	1	1002291	0	C	A	bias_e_value=2102720	bias_p_value=1	consensus_score=236.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=36/48	major_frequency=9.882e-01	minor_base=G	minor_cov=0/1	new_cov=36/48	polymorphism_frequency=9.882e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/49
RA	3609	.	1	1003612	0	T	C	bias_e_value=1777910	bias_p_value=0.845528	consensus_score=231.8	fisher_strand_p_value=0.498495	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=39/45	major_frequency=9.767e-01	minor_base=A	minor_cov=0/2	new_cov=39/45	polymorphism_frequency=9.767e-01	polymorphism_score=-5.8	prediction=consensus	ref_cov=0/0	total_cov=39/48
RA	3610	.	1	1004318	0	C	T	consensus_score=239.9	frequency=1	major_base=T	major_cov=39/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/45
RA	3611	.	1	1004715	0	A	G	bias_e_value=250385	bias_p_value=0.119077	consensus_score=122.8	fisher_strand_p_value=0.0255042	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=27/25	major_frequency=8.966e-01	minor_base=A	minor_cov=0/6	new_cov=27/25	polymorphism_frequency=8.966e-01	polymorphism_score=-3.8	prediction=consensus	ref_cov=0/6	total_cov=27/31
RA	3612	.	1	1005131	0	C	T	consensus_score=295.5	frequency=1	major_base=T	major_cov=47/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/51
RA	3613	.	1	1006105	0	T	C	consensus_score=249.1	frequency=1	major_base=C	major_cov=46/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/36
RA	3614	.	1	1006451	0	T	G	consensus_score=279.4	frequency=1	major_base=G	major_cov=47/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/48
RA	3615	.	1	1007228	0	A	G	consensus_score=222.8	frequency=1	major_base=G	major_cov=31/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/43
RA	3616	.	1	1007571	0	A	G	consensus_score=183.0	frequency=1	major_base=G	major_cov=34/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/30
RA	3617	.	1	1009200	0	C	T	bias_e_value=1727290	bias_p_value=0.821455	consensus_score=161.3	fisher_strand_p_value=0.465517	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=31/26	major_frequency=9.828e-01	minor_base=C	minor_cov=0/1	new_cov=31/26	polymorphism_frequency=9.828e-01	polymorphism_score=-5.6	prediction=consensus	ref_cov=0/1	total_cov=31/27
RA	3618	.	1	1015103	0	T	G	consensus_score=215.0	frequency=1	major_base=G	major_cov=31/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/40
RA	3619	.	1	1016132	0	A	C	consensus_score=318.7	frequency=1	major_base=C	major_cov=60/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/49
RA	3620	.	1	1019136	0	T	G	consensus_score=236.3	frequency=1	major_base=G	major_cov=39/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/39
RA	3621	.	1	1021331	0	G	A	consensus_score=198.5	frequency=1	major_base=A	major_cov=32/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/38
RA	3622	.	1	1022093	1	.	A	bias_e_value=1448440	bias_p_value=0.688842	consensus_score=179.4	fisher_strand_p_value=0.34375	frequency=1	ks_quality_p_value=0.941746	major_base=A	major_cov=42/21	major_frequency=9.844e-01	minor_base=.	minor_cov=0/1	new_cov=42/21	polymorphism_frequency=9.844e-01	polymorphism_score=-3.3	prediction=consensus	ref_cov=0/1	total_cov=42/22
RA	3623	.	1	1022280	0	A	G	consensus_score=277.5	frequency=1	major_base=G	major_cov=50/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/42
RA	3624	.	1	1022785	0	G	A	consensus_score=288.2	frequency=1	major_base=A	major_cov=43/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/56
RA	3625	.	1	1022997	0	A	G	consensus_score=204.8	frequency=1	major_base=G	major_cov=35/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/35
RA	3626	.	1	1023520	0	G	A	consensus_score=260.3	frequency=1	major_base=A	major_cov=43/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/47
RA	3627	.	1	1026037	0	G	T	consensus_score=305.6	frequency=1	major_base=T	major_cov=54/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/48
RA	3628	.	1	1027890	0	A	G	consensus_score=256.9	frequency=1	major_base=G	major_cov=35/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/54
RA	3629	.	1	1029359	0	T	C	consensus_score=256.1	frequency=1	major_base=C	major_cov=44/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/45
RA	3630	.	1	1030184	0	G	A	consensus_score=245.3	frequency=1	major_base=A	major_cov=35/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/47
RA	3631	.	1	1030646	0	C	T	consensus_score=242.9	frequency=1	major_base=T	major_cov=31/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/49
RA	3632	.	1	1030895	0	T	C	consensus_score=251.3	frequency=1	major_base=C	major_cov=40/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/47
RA	3633	.	1	1032219	0	T	C	bias_e_value=1694670	bias_p_value=0.805941	consensus_score=219.8	fisher_strand_p_value=0.445783	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=36/46	major_frequency=9.880e-01	minor_base=G	minor_cov=1/0	new_cov=36/46	polymorphism_frequency=9.880e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/46
RA	3634	.	1	1032441	0	C	T	consensus_score=239.2	frequency=1	major_base=T	major_cov=51/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/30
RA	3635	.	1	1035352	0	C	T	consensus_score=326.6	frequency=1	major_base=T	major_cov=49/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/59
RA	3636	.	1	1036648	0	T	C	consensus_score=302.2	frequency=1	major_base=C	major_cov=42/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/57
RA	3637	.	1	1036873	0	A	G	consensus_score=45.1	deleted=1	frequency=1	major_base=G	major_cov=12/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/5
RA	3638	.	1	1037242	0	G	T	consensus_score=144.5	frequency=1	major_base=T	major_cov=17/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/35
RA	3639	.	1	1037271	0	G	C	consensus_score=108.0	frequency=1	major_base=C	major_cov=13/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/26
RA	3640	.	1	1037274	0	A	G	consensus_score=111.1	frequency=1	major_base=G	major_cov=13/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/26
RA	3641	.	1	1037280	0	G	A	consensus_score=110.3	frequency=1	major_base=A	major_cov=13/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/26
RA	3642	.	1	1037295	0	T	C	consensus_score=97.3	frequency=1	major_base=C	major_cov=10/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/24
RA	3643	.	1	1037316	0	A	G	consensus_score=37.0	deleted=1	frequency=1	major_base=G	major_cov=5/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/9
RA	3644	.	1	1037319	0	T	C	consensus_score=39.0	deleted=1	frequency=1	major_base=C	major_cov=5/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/9
RA	3645	.	1	1037322	0	C	T	consensus_score=33.6	deleted=1	frequency=1	major_base=T	major_cov=5/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/9
RA	3646	.	1	1037325	0	T	C	consensus_score=39.1	deleted=1	frequency=1	major_base=C	major_cov=5/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/9
RA	3647	.	1	1037328	0	G	A	consensus_score=36.2	deleted=1	frequency=1	major_base=A	major_cov=5/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/9
RA	3648	.	1	1037331	0	A	G	consensus_score=36.7	deleted=1	frequency=1	major_base=G	major_cov=5/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/9
RA	3649	.	1	1037334	0	C	T	consensus_score=36.4	deleted=1	frequency=1	major_base=T	major_cov=5/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/9
RA	3650	.	1	1039509	0	G	A	consensus_score=308.8	frequency=1	major_base=A	major_cov=54/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/48
RA	3651	.	1	1045438	0	T	C	consensus_score=282.4	frequency=1	major_base=C	major_cov=51/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/45
RA	3652	.	1	1046415	0	A	G	consensus_score=246.7	frequency=1	major_base=G	major_cov=37/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/47
RA	3653	.	1	1049770	0	A	C	consensus_score=183.8	frequency=1	major_base=C	major_cov=23/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/38
RA	3654	.	1	1055338	0	C	T	bias_e_value=2102720	bias_p_value=1	consensus_score=290.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=57/47	major_frequency=9.905e-01	minor_base=C	minor_cov=1/0	new_cov=57/47	polymorphism_frequency=9.905e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=58/47
RA	3655	.	1	1055968	0	C	T	bias_e_value=0.00166122	bias_p_value=7.90033e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=96.8	fisher_strand_p_value=3.13689e-11	frequency=3.038e-01	ks_quality_p_value=1	major_base=C	major_cov=13/42	major_frequency=6.962e-01	minor_base=T	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=3.038e-01	polymorphism_score=18.2	prediction=polymorphism	ref_cov=13/42	total_cov=37/42
RA	3656	.	1	1055993	0	C	T	bias_e_value=6.61428e-08	bias_p_value=3.14558e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=78.7	fisher_strand_p_value=8.81997e-16	frequency=3.875e-01	ks_quality_p_value=1	major_base=C	major_cov=7/42	major_frequency=6.125e-01	minor_base=T	minor_cov=31/0	new_cov=31/0	polymorphism_frequency=3.875e-01	polymorphism_score=25.9	prediction=polymorphism	ref_cov=7/42	total_cov=39/42
RA	3657	.	1	1056025	0	G	T	bias_e_value=1.16778	bias_p_value=5.55365e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=161.8	fisher_strand_p_value=3.03294e-08	frequency=2.432e-01	ks_quality_p_value=1	major_base=G	major_cov=16/40	major_frequency=7.568e-01	minor_base=T	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.432e-01	polymorphism_score=10.7	prediction=polymorphism	ref_cov=16/40	total_cov=34/40
RA	3658	.	1	1057519	0	C	T	consensus_score=160.8	frequency=1	major_base=T	major_cov=28/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/26
RA	3659	.	1	1058600	0	T	C	consensus_score=308.4	frequency=1	major_base=C	major_cov=49/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/57
RA	3660	.	1	1059457	0	T	C	consensus_score=109.6	frequency=1	major_base=C	major_cov=16/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/21
RA	3661	.	1	1059495	0	C	A	consensus_score=104.6	frequency=1	major_base=A	major_cov=19/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/16
RA	3662	.	1	1060285	0	T	C	consensus_score=275.8	frequency=1	major_base=C	major_cov=45/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/49
RA	3663	.	1	1061051	0	C	T	consensus_score=62.4	frequency=1	major_base=T	major_cov=8/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/15
RA	3664	.	1	1061183	0	C	T	consensus_score=154.3	frequency=1	major_base=T	major_cov=25/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/28
RA	3665	.	1	1061364	0	A	T	consensus_score=235.1	frequency=1	major_base=T	major_cov=49/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/32
RA	3666	.	1	1062527	0	C	T	consensus_score=352.1	frequency=1	major_base=T	major_cov=47/75	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/75	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/75
RA	3667	.	1	1064009	0	T	C	bias_e_value=1626580	bias_p_value=0.773558	consensus_score=314.3	fisher_strand_p_value=0.407767	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=41/61	major_frequency=9.903e-01	minor_base=A	minor_cov=1/0	new_cov=41/61	polymorphism_frequency=9.903e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/61
RA	3668	.	1	1064874	0	C	T	consensus_score=295.5	frequency=1	major_base=T	major_cov=51/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/48
RA	3669	.	1	1064961	0	A	G	consensus_score=293.4	frequency=1	major_base=G	major_cov=54/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/49
RA	3670	.	1	1066691	0	T	G	consensus_score=276.0	frequency=1	major_base=G	major_cov=46/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/49
RA	3671	.	1	1067498	0	A	G	consensus_score=269.8	frequency=1	major_base=G	major_cov=36/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/54
RA	3672	.	1	1067795	0	T	C	consensus_score=232.0	frequency=1	major_base=C	major_cov=41/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/39
RA	3673	.	1	1068432	0	G	A	consensus_score=139.1	frequency=1	major_base=A	major_cov=25/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/24
RA	3674	.	1	1069525	0	C	A	consensus_score=269.0	frequency=1	major_base=A	major_cov=40/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/53
RA	3675	.	1	1074108	0	C	T	bias_e_value=1625900	bias_p_value=0.773235	consensus_score=216.3	fisher_strand_p_value=0.407407	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=32/48	major_frequency=9.877e-01	minor_base=C	minor_cov=1/0	new_cov=32/48	polymorphism_frequency=9.877e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=35/48
RA	3676	.	1	1076204	0	T	C	consensus_score=217.7	frequency=1	major_base=C	major_cov=55/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/21
RA	3677	.	1	1077067	0	C	T	consensus_score=230.3	frequency=1	major_base=T	major_cov=32/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/45
RA	3678	.	1	1078597	0	T	G	consensus_score=247.5	frequency=1	major_base=G	major_cov=46/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/34
RA	3679	.	1	1079936	0	T	G	consensus_score=236.5	frequency=1	major_base=G	major_cov=39/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/40
RA	3680	.	1	1080126	0	C	.	consensus_score=292.2	frequency=1	major_base=.	major_cov=39/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/30
RA	3681	.	1	1080270	0	G	A	consensus_score=233.9	frequency=1	major_base=A	major_cov=33/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/45
RA	3682	.	1	1080438	0	T	C	consensus_score=278.2	frequency=1	major_base=C	major_cov=44/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/51
RA	3683	.	1	1080726	0	A	G	consensus_score=231.1	frequency=1	major_base=G	major_cov=44/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/37
RA	3684	.	1	1080751	0	T	C	bias_e_value=1713080	bias_p_value=0.814699	consensus_score=240.3	fisher_strand_p_value=0.45679	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=44/36	major_frequency=9.877e-01	minor_base=T	minor_cov=0/1	new_cov=44/36	polymorphism_frequency=9.877e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=44/37
RA	3685	.	1	1082376	0	G	A	consensus_score=53.4	deleted=1	frequency=1	major_base=A	major_cov=14/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/6
RA	3686	.	1	1082386	0	G	A	consensus_score=30.1	deleted=1	frequency=1	major_base=A	major_cov=9/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/3
RA	3687	.	1	1085769	0	T	C	consensus_score=197.3	frequency=1	major_base=C	major_cov=26/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/44
RA	3688	.	1	1086459	0	T	C	consensus_score=288.5	frequency=1	major_base=C	major_cov=33/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/67
RA	3689	.	1	1088206	0	A	G	consensus_score=163.0	frequency=1	major_base=G	major_cov=29/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/25
RA	3690	.	1	1089886	0	T	C	consensus_score=212.0	frequency=1	major_base=C	major_cov=38/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/35
RA	3691	.	1	1089888	0	G	C	bias_e_value=1758300	bias_p_value=0.836203	consensus_score=202.6	fisher_strand_p_value=0.486111	frequency=1	ks_quality_p_value=0.998436	major_base=C	major_cov=37/34	major_frequency=9.861e-01	minor_base=A	minor_cov=0/1	new_cov=37/34	polymorphism_frequency=9.861e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/35
RA	3692	.	1	1090237	0	A	G	consensus_score=221.7	frequency=1	major_base=G	major_cov=33/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/40
RA	3693	.	1	1090390	0	G	A	consensus_score=208.2	frequency=1	major_base=A	major_cov=35/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/37
RA	3694	.	1	1090604	0	C	T	consensus_score=288.0	frequency=1	major_base=T	major_cov=53/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/46
RA	3695	.	1	1091429	0	T	C	consensus_score=224.8	frequency=1	major_base=C	major_cov=37/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/37
RA	3696	.	1	1092990	0	T	C	consensus_score=262.1	frequency=1	major_base=C	major_cov=38/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/48
RA	3697	.	1	1094121	0	G	T	consensus_score=242.4	frequency=1	major_base=T	major_cov=34/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/50
RA	3698	.	1	1094193	0	C	T	consensus_score=278.4	frequency=1	major_base=T	major_cov=41/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/52
RA	3699	.	1	1094461	0	C	T	consensus_score=313.6	frequency=1	major_base=T	major_cov=53/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/54
RA	3700	.	1	1094715	0	T	C	consensus_score=301.5	frequency=1	major_base=C	major_cov=54/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/49
RA	3701	.	1	1095176	0	A	G	consensus_score=255.4	frequency=1	major_base=G	major_cov=48/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/36
RA	3702	.	1	1095729	0	C	T	consensus_score=241.4	frequency=1	major_base=T	major_cov=38/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/46
RA	3703	.	1	1097743	0	T	C	consensus_score=245.0	frequency=1	major_base=C	major_cov=41/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/43
RA	3704	.	1	1099031	0	T	C	consensus_score=217.3	frequency=1	major_base=C	major_cov=31/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/40
RA	3705	.	1	1099284	0	C	T	consensus_score=246.2	frequency=1	major_base=T	major_cov=41/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/42
RA	3706	.	1	1099791	0	G	A	bias_e_value=1749960	bias_p_value=0.832234	consensus_score=283.0	fisher_strand_p_value=0.48	frequency=1	ks_quality_p_value=0.999798	major_base=A	major_cov=52/47	major_frequency=9.900e-01	minor_base=C	minor_cov=0/1	new_cov=52/47	polymorphism_frequency=9.900e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/48
RA	3707	.	1	1100312	0	A	C	bias_e_value=2102720	bias_p_value=1	consensus_score=265.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999045	major_base=C	major_cov=48/43	major_frequency=9.891e-01	minor_base=A	minor_cov=1/0	new_cov=48/43	polymorphism_frequency=9.891e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=49/43
RA	3708	.	1	1103125	0	T	C	consensus_score=292.3	frequency=1	major_base=C	major_cov=45/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/51
RA	3709	.	1	1106035	0	A	G	bias_e_value=2102720	bias_p_value=1	consensus_score=283.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=54/44	major_frequency=9.899e-01	minor_base=A	minor_cov=1/0	new_cov=54/44	polymorphism_frequency=9.899e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=55/44
RA	3710	.	1	1108726	0	C	T	consensus_score=230.3	frequency=1	major_base=T	major_cov=32/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/48
RA	3711	.	1	1109767	1	.	T	consensus_score=205.5	frequency=1	major_base=T	major_cov=43/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/28
RA	3712	.	1	1109767	2	.	G	consensus_score=214.4	frequency=1	major_base=G	major_cov=43/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/28
RA	3713	.	1	1110476	0	A	G	consensus_score=268.6	frequency=1	major_base=G	major_cov=53/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/39
RA	3714	.	1	1110644	0	T	C	consensus_score=240.5	frequency=1	major_base=C	major_cov=53/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/33
RA	3715	.	1	1110711	0	A	G	consensus_score=274.6	frequency=1	major_base=G	major_cov=51/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/38
RA	3716	.	1	1110797	0	G	T	consensus_score=249.3	frequency=1	major_base=T	major_cov=48/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/37
RA	3717	.	1	1112520	0	G	A	consensus_score=208.6	frequency=1	major_base=A	major_cov=36/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/35
RA	3718	.	1	1115237	0	T	C	consensus_score=245.1	frequency=1	major_base=C	major_cov=48/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/38
RA	3719	.	1	1118430	0	A	G	bias_e_value=2102720	bias_p_value=1	consensus_score=308.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=55/47	major_frequency=9.903e-01	minor_base=T	minor_cov=1/0	new_cov=55/47	polymorphism_frequency=9.903e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/47
RA	3720	.	1	1120733	0	G	A	consensus_score=160.0	frequency=1	major_base=A	major_cov=28/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/26
RA	3721	.	1	1121433	0	A	G	consensus_score=172.0	frequency=1	major_base=G	major_cov=33/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/27
RA	3722	.	1	1122062	0	A	G	consensus_score=193.0	frequency=1	major_base=G	major_cov=25/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/41
RA	3723	.	1	1122540	0	G	T	consensus_score=225.0	frequency=1	major_base=T	major_cov=37/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/38
RA	3724	.	1	1122750	0	A	G	consensus_score=225.4	frequency=1	major_base=G	major_cov=41/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/38
RA	3725	.	1	1125979	0	T	C	consensus_score=164.0	frequency=1	major_base=C	major_cov=25/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/28
RA	3726	.	1	1126921	0	A	G	consensus_score=154.7	frequency=1	major_base=G	major_cov=29/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/25
RA	3727	.	1	1127508	0	T	C	consensus_score=61.2	frequency=1	major_base=C	major_cov=16/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/6
RA	3728	.	1	1127526	0	A	C	consensus_score=57.4	frequency=1	major_base=C	major_cov=14/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/6
RA	3729	.	1	1127538	0	A	T	consensus_score=59.3	frequency=1	major_base=T	major_cov=14/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/8
RA	3730	.	1	1127555	0	C	A	consensus_score=91.6	frequency=1	major_base=A	major_cov=23/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/10
RA	3731	.	1	1127575	0	A	T	consensus_score=89.9	frequency=1	major_base=T	major_cov=21/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/12
RA	3732	.	1	1127576	0	C	T	consensus_score=93.4	frequency=1	major_base=T	major_cov=21/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/12
RA	3733	.	1	1127577	0	C	T	consensus_score=90.5	frequency=1	major_base=T	major_cov=21/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/12
RA	3734	.	1	1127578	0	A	G	consensus_score=99.3	frequency=1	major_base=G	major_cov=21/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/12
RA	3735	.	1	1127646	0	G	C	consensus_score=101.2	frequency=1	major_base=C	major_cov=21/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/16
RA	3736	.	1	1127652	0	A	G	consensus_score=129.5	frequency=1	major_base=G	major_cov=26/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/18
RA	3737	.	1	1127686	0	T	C	consensus_score=160.8	frequency=1	major_base=C	major_cov=29/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/25
RA	3738	.	1	1127688	0	A	C	consensus_score=157.7	frequency=1	major_base=C	major_cov=28/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/25
RA	3739	.	1	1128132	0	T	C	consensus_score=37.3	deleted=1	frequency=1	major_base=C	major_cov=6/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/9
RA	3740	.	1	1128546	0	G	A	consensus_score=25.1	deleted=1	frequency=1	major_base=A	major_cov=6/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/6
RA	3741	.	1	1128571	0	A	T	consensus_score=27.9	deleted=1	frequency=1	major_base=T	major_cov=7/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/7
RA	3742	.	1	1128591	0	G	C	consensus_score=33.0	deleted=1	frequency=1	major_base=C	major_cov=7/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/9
RA	3743	.	1	1128594	0	C	T	consensus_score=33.5	deleted=1	frequency=1	major_base=T	major_cov=7/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/9
RA	3744	.	1	1128611	0	C	T	consensus_score=47.3	deleted=1	frequency=1	major_base=T	major_cov=10/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/11
RA	3745	.	1	1129580	0	T	G	consensus_score=98.7	frequency=1	major_base=G	major_cov=19/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/17
RA	3746	.	1	1129670	0	C	A	consensus_score=156.6	frequency=1	major_base=A	major_cov=27/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/28
RA	3747	.	1	1129676	0	G	A	consensus_score=154.0	frequency=1	major_base=A	major_cov=27/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/28
RA	3748	.	1	1131879	0	C	T	consensus_score=66.7	frequency=1	major_base=T	major_cov=9/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/16
RA	3749	.	1	1132505	0	C	T	consensus_score=142.4	frequency=1	major_base=T	major_cov=31/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/17
RA	3750	.	1	1134780	0	G	A	consensus_score=12.1	deleted=1	frequency=1	major_base=A	major_cov=3/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/3
RA	3751	.	1	1134789	0	T	G	consensus_score=11.8	deleted=1	frequency=1	major_base=G	major_cov=3/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/3
RA	3752	.	1	1134792	0	T	A	consensus_score=11.6	deleted=1	frequency=1	major_base=A	major_cov=3/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/3
RA	3753	.	1	1134795	0	T	C	consensus_score=11.7	deleted=1	frequency=1	major_base=C	major_cov=3/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/3
RA	3754	.	1	1134798	0	C	T	consensus_score=12.3	deleted=1	frequency=1	major_base=T	major_cov=3/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/3
RA	3755	.	1	1134800	0	A	C	consensus_score=11.5	deleted=1	frequency=1	major_base=C	major_cov=3/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/3
RA	3756	.	1	1134804	0	T	A	consensus_score=12.4	deleted=1	frequency=1	major_base=A	major_cov=3/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/3
RA	3757	.	1	1134807	0	T	G	consensus_score=11.9	deleted=1	frequency=1	major_base=G	major_cov=3/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/3
RA	3758	.	1	1134810	0	G	T	consensus_score=11.2	deleted=1	frequency=1	major_base=T	major_cov=3/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/3
RA	3759	.	1	1134825	0	A	G	consensus_score=78.6	frequency=1	major_base=G	major_cov=13/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/16
RA	3760	.	1	1134834	0	G	A	consensus_score=87.8	frequency=1	major_base=A	major_cov=13/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/17
RA	3761	.	1	1134837	0	T	G	consensus_score=83.1	frequency=1	major_base=G	major_cov=13/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/17
RA	3762	.	1	1134888	0	T	G	consensus_score=129.3	frequency=1	major_base=G	major_cov=19/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/26
RA	3763	.	1	1134906	0	T	C	consensus_score=154.2	frequency=1	major_base=C	major_cov=22/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/30
RA	3764	.	1	1134965	0	T	C	consensus_score=216.8	frequency=1	major_base=C	major_cov=35/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/36
RA	3765	.	1	1135008	0	A	G	consensus_score=189.3	frequency=1	major_base=G	major_cov=32/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/30
RA	3766	.	1	1135009	0	A	T	consensus_score=176.7	frequency=1	major_base=T	major_cov=32/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/30
RA	3767	.	1	1135010	0	T	A	consensus_score=177.0	frequency=1	major_base=A	major_cov=32/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/30
RA	3768	.	1	1135016	0	T	C	consensus_score=179.8	frequency=1	major_base=C	major_cov=32/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/30
RA	3769	.	1	1135018	0	A	C	consensus_score=183.7	frequency=1	major_base=C	major_cov=32/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/30
RA	3770	.	1	1135019	0	T	C	consensus_score=184.8	frequency=1	major_base=C	major_cov=32/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/30
RA	3771	.	1	1135028	0	G	A	bias_e_value=2102720	bias_p_value=1	consensus_score=224.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=40/38	major_frequency=9.873e-01	minor_base=C	minor_cov=1/0	new_cov=40/38	polymorphism_frequency=9.873e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/38
RA	3772	.	1	1135045	0	C	A	consensus_score=217.1	frequency=1	major_base=A	major_cov=38/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/38
RA	3773	.	1	1135056	0	G	A	consensus_score=220.1	frequency=1	major_base=A	major_cov=41/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/36
RA	3774	.	1	1135057	0	G	A	consensus_score=221.0	frequency=1	major_base=A	major_cov=41/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/36
RA	3775	.	1	1135069	0	T	C	consensus_score=215.0	frequency=1	major_base=C	major_cov=39/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/35
RA	3776	.	1	1135071	0	A	T	consensus_score=212.2	frequency=1	major_base=T	major_cov=39/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/35
RA	3777	.	1	1135072	0	T	C	consensus_score=225.1	frequency=1	major_base=C	major_cov=39/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/35
RA	3778	.	1	1135078	0	G	A	consensus_score=216.0	frequency=1	major_base=A	major_cov=40/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/36
RA	3779	.	1	1135092	0	A	G	consensus_score=216.7	frequency=1	major_base=G	major_cov=40/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/35
RA	3780	.	1	1135094	0	G	A	consensus_score=226.1	frequency=1	major_base=A	major_cov=40/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/35
RA	3781	.	1	1136133	0	G	T	consensus_score=182.9	frequency=1	major_base=T	major_cov=36/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/28
RA	3782	.	1	1136158	0	G	A	bias_e_value=1640430	bias_p_value=0.780145	consensus_score=189.5	fisher_strand_p_value=0.415385	frequency=1	ks_quality_p_value=0.999519	major_base=A	major_cov=38/26	major_frequency=9.846e-01	minor_base=G	minor_cov=0/1	new_cov=38/26	polymorphism_frequency=9.846e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=38/27
RA	3783	.	1	1137480	0	A	G	consensus_score=195.6	frequency=1	major_base=G	major_cov=34/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/34
RA	3784	.	1	1137755	0	T	C	consensus_score=224.7	frequency=1	major_base=C	major_cov=40/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/37
RA	3785	.	1	1138194	0	T	C	consensus_score=184.6	frequency=1	major_base=C	major_cov=32/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/31
RA	3786	.	1	1141622	0	G	A	consensus_score=177.0	frequency=1	major_base=A	major_cov=29/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/34
RA	3787	.	1	1142257	0	A	G	consensus_score=238.4	frequency=1	major_base=G	major_cov=38/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/41
RA	3788	.	1	1144894	0	C	A	bias_e_value=2097900	bias_p_value=0.997709	consensus_score=53.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.93308	major_base=A	major_cov=7/14	major_frequency=9.545e-01	minor_base=G	minor_cov=0/1	new_cov=7/14	polymorphism_frequency=9.545e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=0/0	total_cov=7/15
RA	3789	.	1	1145227	0	A	C	consensus_score=60.0	frequency=1	major_base=C	major_cov=14/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/7
RA	3790	.	1	1145287	0	G	A	consensus_score=47.4	frequency=1	major_base=A	major_cov=14/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/4
RA	3791	.	1	1145486	0	T	G	consensus_score=99.8	frequency=1	major_base=G	major_cov=17/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/16
RA	3792	.	1	1150218	0	T	C	consensus_score=232.3	frequency=1	major_base=C	major_cov=36/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/40
RA	3793	.	1	1151322	0	G	A	bias_e_value=1681810	bias_p_value=0.799825	consensus_score=265.2	fisher_strand_p_value=0.44086	frequency=1	ks_quality_p_value=0.994173	major_base=A	major_cov=52/40	major_frequency=9.892e-01	minor_base=.	minor_cov=0/1	new_cov=52/40	polymorphism_frequency=9.892e-01	polymorphism_score=-3.4	prediction=consensus	ref_cov=0/0	total_cov=52/41
RA	3794	.	1	1152898	0	G	A	consensus_score=135.5	frequency=1	major_base=A	major_cov=27/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/21
RA	3795	.	1	1153243	0	G	A	consensus_score=146.4	frequency=1	major_base=A	major_cov=26/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/26
RA	3796	.	1	1154537	0	T	G	bias_e_value=5.46064e-05	bias_p_value=2.59694e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=89.8	fisher_strand_p_value=9.03845e-13	frequency=4.154e-01	ks_quality_p_value=1	major_base=T	major_cov=6/32	major_frequency=5.846e-01	minor_base=G	minor_cov=27/0	new_cov=27/0	polymorphism_frequency=4.154e-01	polymorphism_score=10.7	prediction=polymorphism	ref_cov=6/32	total_cov=33/32
RA	3797	.	1	1155945	0	G	T	consensus_score=99.8	frequency=1	major_base=T	major_cov=21/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/15
RA	3798	.	1	1156958	0	A	G	consensus_score=223.1	frequency=1	major_base=G	major_cov=42/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/36
RA	3799	.	1	1158565	0	G	A	consensus_score=240.8	frequency=1	major_base=A	major_cov=35/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/53
RA	3800	.	1	1159605	0	C	T	consensus_score=89.8	frequency=1	major_base=T	major_cov=13/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/21
RA	3801	.	1	1159864	0	C	T	consensus_score=139.7	frequency=1	major_base=T	major_cov=25/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/24
RA	3802	.	1	1161827	0	C	G	consensus_score=229.7	frequency=1	major_base=G	major_cov=44/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/36
RA	3803	.	1	1163916	0	T	C	consensus_score=216.8	frequency=1	major_base=C	major_cov=41/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/33
RA	3804	.	1	1164270	0	T	C	bias_e_value=1671280	bias_p_value=0.794819	consensus_score=206.5	fisher_strand_p_value=0.432432	frequency=1	ks_quality_p_value=0.99963	major_base=C	major_cov=42/31	major_frequency=9.865e-01	minor_base=T	minor_cov=0/1	new_cov=42/31	polymorphism_frequency=9.865e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=42/32
RA	3805	.	1	1165195	0	C	T	bias_e_value=0.00479749	bias_p_value=2.28157e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=83.2	fisher_strand_p_value=9.47503e-11	frequency=2.407e-01	ks_quality_p_value=1	major_base=C	major_cov=2/39	major_frequency=7.593e-01	minor_base=T	minor_cov=13/0	new_cov=13/0	polymorphism_frequency=2.407e-01	polymorphism_score=11.3	prediction=polymorphism	ref_cov=2/39	total_cov=16/39
RA	3806	.	1	1165205	0	T	G	bias_e_value=493803	bias_p_value=0.23484	consensus_score=138.8	fisher_strand_p_value=0.0635919	frequency=1	ks_quality_p_value=0.977466	major_base=G	major_cov=12/40	major_frequency=9.630e-01	minor_base=C	minor_cov=2/0	new_cov=12/40	polymorphism_frequency=9.630e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=0/0	total_cov=14/40
RA	3807	.	1	1166962	0	T	G	consensus_score=240.9	frequency=1	major_base=G	major_cov=38/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/41
RA	3808	.	1	1167326	0	C	T	bias_e_value=2102720	bias_p_value=1	consensus_score=221.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999675	major_base=T	major_cov=30/48	major_frequency=9.873e-01	minor_base=C	minor_cov=0/1	new_cov=30/48	polymorphism_frequency=9.873e-01	polymorphism_score=-4.8	prediction=consensus	ref_cov=0/1	total_cov=30/49
RA	3809	.	1	1171117	0	A	G	consensus_score=232.6	frequency=1	major_base=G	major_cov=38/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/42
RA	3810	.	1	1171573	0	A	G	consensus_score=217.6	frequency=1	major_base=G	major_cov=27/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/45
RA	3811	.	1	1172641	0	G	A	consensus_score=193.3	frequency=1	major_base=A	major_cov=36/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/31
RA	3812	.	1	1173883	0	G	A	bias_e_value=1297950	bias_p_value=0.617272	consensus_score=279.8	fisher_strand_p_value=0.351064	frequency=1	ks_quality_p_value=0.75559	major_base=A	major_cov=61/32	major_frequency=9.894e-01	minor_base=.	minor_cov=0/1	new_cov=61/32	polymorphism_frequency=9.894e-01	polymorphism_score=-3.5	prediction=consensus	ref_cov=0/0	total_cov=61/33
RA	3813	.	1	1174137	0	T	C	bias_e_value=2102720	bias_p_value=1	consensus_score=275.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999781	major_base=C	major_cov=48/47	major_frequency=9.896e-01	minor_base=T	minor_cov=0/1	new_cov=48/47	polymorphism_frequency=9.896e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=48/48
RA	3814	.	1	1175145	0	A	G	consensus_score=254.8	frequency=1	major_base=G	major_cov=39/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/45
RA	3815	.	1	1176066	0	T	G	consensus_score=177.5	frequency=1	major_base=G	major_cov=31/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/31
RA	3816	.	1	1177777	0	T	G	consensus_score=250.8	frequency=1	major_base=G	major_cov=37/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/48
RA	3817	.	1	1177780	0	G	A	consensus_score=252.8	frequency=1	major_base=A	major_cov=37/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/48
RA	3818	.	1	1179180	0	T	G	consensus_score=248.9	frequency=1	major_base=G	major_cov=43/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/42
RA	3819	.	1	1181392	0	C	T	bias_e_value=1667670	bias_p_value=0.793103	consensus_score=255.8	fisher_strand_p_value=0.430233	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=49/36	major_frequency=9.884e-01	minor_base=G	minor_cov=0/1	new_cov=49/36	polymorphism_frequency=9.884e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/37
RA	3820	.	1	1183057	0	T	C	consensus_score=231.0	frequency=1	major_base=C	major_cov=48/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/30
RA	3821	.	1	1183721	0	T	C	consensus_score=196.4	frequency=1	major_base=C	major_cov=35/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/33
RA	3822	.	1	1185277	0	G	A	consensus_score=218.9	frequency=1	major_base=A	major_cov=38/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/39
RA	3823	.	1	1186428	0	C	T	bias_e_value=1.01836e-05	bias_p_value=4.84306e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=128.8	fisher_strand_p_value=1.58944e-13	frequency=2.658e-01	ks_quality_p_value=1	major_base=C	major_cov=51/7	major_frequency=7.342e-01	minor_base=T	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=2.658e-01	polymorphism_score=13.4	prediction=polymorphism	ref_cov=51/7	total_cov=51/28
RA	3824	.	1	1187631	0	T	C	consensus_score=209.1	frequency=1	major_base=C	major_cov=39/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/41
RA	3825	.	1	1188474	0	A	G	consensus_score=187.9	frequency=1	major_base=G	major_cov=38/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/23
RA	3826	.	1	1190848	0	G	A	bias_e_value=2102720	bias_p_value=1	consensus_score=252.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999739	major_base=A	major_cov=36/51	major_frequency=9.886e-01	minor_base=C	minor_cov=0/1	new_cov=36/51	polymorphism_frequency=9.886e-01	polymorphism_score=-6.5	prediction=consensus	ref_cov=0/0	total_cov=36/52
RA	3827	.	1	1192724	0	T	C	consensus_score=200.7	frequency=1	major_base=C	major_cov=43/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/26
RA	3828	.	1	1196358	0	C	T	consensus_score=226.9	frequency=1	major_base=T	major_cov=40/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/38
RA	3829	.	1	1197981	0	C	T	consensus_score=266.1	frequency=1	major_base=T	major_cov=48/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/45
RA	3830	.	1	1198517	0	C	T	consensus_score=224.7	frequency=1	major_base=T	major_cov=36/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/43
RA	3831	.	1	1199427	0	A	G	consensus_score=205.9	frequency=1	major_base=G	major_cov=28/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/42
RA	3832	.	1	1200588	0	C	T	consensus_score=233.0	frequency=1	major_base=T	major_cov=43/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/37
RA	3833	.	1	1201836	0	C	A	consensus_score=222.5	frequency=1	major_base=A	major_cov=41/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/36
RA	3834	.	1	1202610	0	G	A	consensus_score=254.4	frequency=1	major_base=A	major_cov=47/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/42
RA	3835	.	1	1205093	0	G	A	consensus_score=197.6	frequency=1	major_base=A	major_cov=29/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/37
RA	3836	.	1	1205431	1	.	C	bias_e_value=562399	bias_p_value=0.267463	consensus_score=101.1	fisher_strand_p_value=0.106029	frequency=1	ks_quality_p_value=0.700784	major_base=C	major_cov=16/20	major_frequency=9.000e-01	minor_base=.	minor_cov=4/0	new_cov=16/20	polymorphism_frequency=9.000e-01	polymorphism_score=7.8	prediction=consensus	ref_cov=4/0	total_cov=20/20
RA	3837	.	1	1205431	2	.	C	bias_e_value=1440470	bias_p_value=0.685049	consensus_score=95.5	fisher_strand_p_value=0.341649	frequency=1	ks_quality_p_value=0.937737	major_base=C	major_cov=16/19	major_frequency=8.750e-01	minor_base=.	minor_cov=4/1	new_cov=16/19	polymorphism_frequency=8.750e-01	polymorphism_score=11.8	prediction=consensus	ref_cov=4/1	total_cov=20/20
RA	3838	.	1	1205655	0	C	T	bias_e_value=1521560	bias_p_value=0.723616	consensus_score=165.5	fisher_strand_p_value=0.355932	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=20/38	major_frequency=9.831e-01	minor_base=G	minor_cov=1/0	new_cov=20/38	polymorphism_frequency=9.831e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/38
RA	3839	.	1	1208104	0	G	T	bias_e_value=1471350	bias_p_value=0.699739	consensus_score=149.4	fisher_strand_p_value=0.339623	frequency=1	ks_quality_p_value=0.982021	major_base=T	major_cov=35/17	major_frequency=9.811e-01	minor_base=G	minor_cov=0/1	new_cov=35/17	polymorphism_frequency=9.811e-01	polymorphism_score=-3.9	prediction=consensus	ref_cov=0/1	total_cov=35/18
RA	3840	.	1	1208434	0	T	C	consensus_score=154.3	frequency=1	major_base=C	major_cov=32/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/26
RA	3841	.	1	1209018	0	A	G	bias_e_value=1768060	bias_p_value=0.840846	consensus_score=162.2	fisher_strand_p_value=0.491833	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=28/28	major_frequency=9.655e-01	minor_base=T	minor_cov=0/2	new_cov=28/28	polymorphism_frequency=9.655e-01	polymorphism_score=-6.4	prediction=consensus	ref_cov=0/0	total_cov=28/30
RA	3842	.	1	1212251	0	T	C	consensus_score=60.7	frequency=1	major_base=C	major_cov=12/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/11
RA	3843	.	1	1213334	0	C	T	consensus_score=88.5	frequency=1	major_base=T	major_cov=17/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/15
RA	3844	.	1	1217219	0	C	T	consensus_score=281.3	frequency=1	major_base=T	major_cov=35/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/57
RA	3845	.	1	1221160	0	T	C	consensus_score=223.7	frequency=1	major_base=C	major_cov=36/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/42
RA	3846	.	1	1221468	0	A	G	bias_e_value=2091270	bias_p_value=0.994555	consensus_score=197.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.897472	major_base=G	major_cov=34/30	major_frequency=9.846e-01	minor_base=.	minor_cov=1/0	new_cov=34/30	polymorphism_frequency=9.846e-01	polymorphism_score=-2.8	prediction=consensus	ref_cov=0/0	total_cov=35/30
RA	3847	.	1	1223084	0	T	C	consensus_score=147.3	frequency=1	major_base=C	major_cov=21/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/31
RA	3848	.	1	1224827	0	C	T	consensus_score=138.3	frequency=1	major_base=T	major_cov=21/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/28
RA	3849	.	1	1225036	0	G	A	consensus_score=150.8	frequency=1	major_base=A	major_cov=23/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/30
RA	3850	.	1	1225142	1	.	G	consensus_score=193.8	frequency=1	major_base=G	major_cov=30/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/39
RA	3851	.	1	1226345	0	A	C	consensus_score=185.2	frequency=1	major_base=C	major_cov=36/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/29
RA	3852	.	1	1227493	0	C	A	bias_e_value=2102720	bias_p_value=1	consensus_score=155.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=27/28	major_frequency=9.821e-01	minor_base=G	minor_cov=0/1	new_cov=27/28	polymorphism_frequency=9.821e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/29
RA	3853	.	1	1229702	0	T	C	consensus_score=205.3	frequency=1	major_base=C	major_cov=38/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/30
RA	3854	.	1	1230833	1	.	C	bias_e_value=5151.47	bias_p_value=0.00244991	consensus_reject=FREQUENCY_CUTOFF	consensus_score=25.6	deleted=1	fisher_strand_p_value=0.000336519	frequency=5.217e-01	ks_quality_p_value=0.78835	major_base=C	major_cov=9/3	major_frequency=5.217e-01	minor_base=.	minor_cov=0/11	new_cov=9/3	polymorphism_frequency=5.217e-01	polymorphism_score=41.5	prediction=polymorphism	ref_cov=0/11	total_cov=9/14
RA	3855	.	1	1230833	2	.	T	bias_e_value=6366.22	bias_p_value=0.00302761	consensus_reject=FREQUENCY_CUTOFF	consensus_score=35.2	fisher_strand_p_value=0.000336519	frequency=5.217e-01	ks_quality_p_value=1	major_base=T	major_cov=9/3	major_frequency=5.217e-01	minor_base=.	minor_cov=0/11	new_cov=9/3	polymorphism_frequency=5.217e-01	polymorphism_score=36.6	prediction=polymorphism	ref_cov=0/11	total_cov=9/14
RA	3856	.	1	1230833	3	.	T	bias_e_value=6366.22	bias_p_value=0.00302761	consensus_reject=FREQUENCY_CUTOFF	consensus_score=35.2	fisher_strand_p_value=0.000336519	frequency=5.217e-01	ks_quality_p_value=1	major_base=T	major_cov=9/3	major_frequency=5.217e-01	minor_base=.	minor_cov=0/11	new_cov=9/3	polymorphism_frequency=5.217e-01	polymorphism_score=36.6	prediction=polymorphism	ref_cov=0/11	total_cov=9/14
RA	3857	.	1	1230833	4	.	G	bias_e_value=6132	bias_p_value=0.00291622	consensus_reject=FREQUENCY_CUTOFF	consensus_score=29.0	fisher_strand_p_value=0.000336519	frequency=5.217e-01	ks_quality_p_value=0.958716	major_base=G	major_cov=9/3	major_frequency=5.217e-01	minor_base=.	minor_cov=0/11	new_cov=9/3	polymorphism_frequency=5.217e-01	polymorphism_score=39.9	prediction=polymorphism	ref_cov=0/11	total_cov=9/14
RA	3858	.	1	1230833	5	.	C	bias_e_value=5151.47	bias_p_value=0.00244991	consensus_reject=FREQUENCY_CUTOFF	consensus_score=25.5	fisher_strand_p_value=0.000336519	frequency=5.217e-01	ks_quality_p_value=0.78835	major_base=C	major_cov=9/3	major_frequency=5.217e-01	minor_base=.	minor_cov=0/11	new_cov=9/3	polymorphism_frequency=5.217e-01	polymorphism_score=41.5	prediction=polymorphism	ref_cov=0/11	total_cov=9/14
RA	3859	.	1	1231357	0	C	G	bias_e_value=1700440	bias_p_value=0.808684	consensus_reject=FREQUENCY_CUTOFF	consensus_score=29.9	fisher_strand_p_value=0.682838	frequency=3.077e-01	ks_quality_p_value=0.657834	major_base=C	major_cov=9/9	major_frequency=6.923e-01	minor_base=G	minor_cov=3/5	new_cov=3/5	polymorphism_frequency=3.077e-01	polymorphism_score=22.0	prediction=polymorphism	ref_cov=9/9	total_cov=12/14
RA	3860	.	1	1231360	0	T	A	bias_e_value=756643	bias_p_value=0.35984	consensus_reject=FREQUENCY_CUTOFF	consensus_score=33.7	fisher_strand_p_value=0.682838	frequency=3.077e-01	ks_quality_p_value=0.165794	major_base=T	major_cov=9/9	major_frequency=6.923e-01	minor_base=A	minor_cov=3/5	new_cov=3/5	polymorphism_frequency=3.077e-01	polymorphism_score=21.4	prediction=polymorphism	ref_cov=9/9	total_cov=12/14
RA	3861	.	1	1235404	1	.	A	consensus_score=56.9	frequency=1	major_base=A	major_cov=8/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/13
RA	3862	.	1	1235520	0	C	T	consensus_score=67.3	frequency=1	major_base=T	major_cov=11/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/14
RA	3863	.	1	1235898	0	A	C	consensus_score=88.0	frequency=1	major_base=C	major_cov=20/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/10
RA	3864	.	1	1236023	0	T	C	consensus_score=150.0	frequency=1	major_base=C	major_cov=34/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/17
RA	3865	.	1	1236713	0	T	C	consensus_score=201.5	frequency=1	major_base=C	major_cov=39/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/28
RA	3866	.	1	1237166	0	A	G	consensus_score=217.0	frequency=1	major_base=G	major_cov=37/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/34
RA	3867	.	1	1238791	0	A	G	consensus_score=152.5	frequency=1	major_base=G	major_cov=25/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/26
RA	3868	.	1	1238855	0	G	C	consensus_score=130.7	frequency=1	major_base=C	major_cov=25/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/19
RA	3869	.	1	1239031	0	C	T	consensus_score=185.3	frequency=1	major_base=T	major_cov=30/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/35
RA	3870	.	1	1239132	0	A	G	consensus_score=204.8	frequency=1	major_base=G	major_cov=26/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/45
RA	3871	.	1	1239419	0	C	A	consensus_score=226.0	frequency=1	major_base=A	major_cov=43/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/36
RA	3872	.	1	1244905	0	T	C	consensus_score=153.5	frequency=1	major_base=C	major_cov=30/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/22
RA	3873	.	1	1246369	0	G	A	consensus_score=220.1	frequency=1	major_base=A	major_cov=40/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/37
RA	3874	.	1	1250842	0	A	G	consensus_score=219.6	frequency=1	major_base=G	major_cov=38/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/38
RA	3875	.	1	1251246	0	A	C	consensus_score=164.6	frequency=1	major_base=C	major_cov=28/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/29
RA	3876	.	1	1254714	0	G	A	consensus_score=111.4	frequency=1	major_base=A	major_cov=24/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/16
RA	3877	.	1	1255391	0	C	T	consensus_score=157.6	frequency=1	major_base=T	major_cov=38/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/16
RA	3878	.	1	1255510	0	A	C	consensus_score=169.3	frequency=1	major_base=C	major_cov=47/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/19
RA	3879	.	1	1255925	0	C	A	bias_e_value=2036350	bias_p_value=0.968436	consensus_reject=FREQUENCY_CUTOFF	consensus_score=158.1	fisher_strand_p_value=0.782893	frequency=2.237e-01	ks_quality_p_value=0.970125	major_base=C	major_cov=35/24	major_frequency=7.763e-01	minor_base=A	minor_cov=11/6	new_cov=11/6	polymorphism_frequency=2.237e-01	polymorphism_score=39.2	prediction=polymorphism	ref_cov=35/24	total_cov=46/30
RA	3880	.	1	1257263	0	A	G	consensus_score=182.5	frequency=1	major_base=G	major_cov=35/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/29
RA	3881	.	1	1257522	0	A	G	bias_e_value=1607850	bias_p_value=0.764652	consensus_score=166.1	fisher_strand_p_value=0.4	frequency=1	ks_quality_p_value=0.994928	major_base=G	major_cov=23/36	major_frequency=9.833e-01	minor_base=C	minor_cov=1/0	new_cov=23/36	polymorphism_frequency=9.833e-01	polymorphism_score=-6.2	prediction=consensus	ref_cov=0/0	total_cov=24/36
RA	3882	.	1	1261065	0	G	T	consensus_score=194.5	frequency=1	major_base=T	major_cov=28/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/44
RA	3883	.	1	1261490	0	A	G	consensus_score=202.7	frequency=1	major_base=G	major_cov=28/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/39
RA	3884	.	1	1262325	0	G	T	bias_e_value=4000.61	bias_p_value=0.00190259	consensus_reject=FREQUENCY_CUTOFF	consensus_score=42.3	fisher_strand_p_value=0.0001999	frequency=3.333e-01	ks_quality_p_value=1	major_base=G	major_cov=15/5	major_frequency=6.667e-01	minor_base=T	minor_cov=0/10	new_cov=0/10	polymorphism_frequency=3.333e-01	polymorphism_score=10.3	prediction=polymorphism	ref_cov=15/5	total_cov=15/15
RA	3885	.	1	1262393	0	C	A	bias_e_value=0.169068	bias_p_value=8.04043e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=33.7	fisher_strand_p_value=3.95122e-09	frequency=3.889e-01	ks_quality_p_value=1	major_base=C	major_cov=21/1	major_frequency=6.111e-01	minor_base=A	minor_cov=0/14	new_cov=0/14	polymorphism_frequency=3.889e-01	polymorphism_score=24.3	prediction=polymorphism	ref_cov=21/1	total_cov=21/15
RA	3886	.	1	1263679	0	T	C	consensus_score=235.2	frequency=1	major_base=C	major_cov=44/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/33
RA	3887	.	1	1266638	0	T	C	consensus_score=193.2	frequency=1	major_base=C	major_cov=34/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/29
RA	3888	.	1	1267790	0	G	T	consensus_score=210.1	frequency=1	major_base=T	major_cov=40/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/31
RA	3889	.	1	1267840	0	G	T	consensus_score=207.4	frequency=1	major_base=T	major_cov=36/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/33
RA	3890	.	1	1268252	0	T	C	consensus_score=187.2	frequency=1	major_base=C	major_cov=27/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/38
RA	3891	.	1	1268416	0	G	A	consensus_score=206.4	frequency=1	major_base=A	major_cov=38/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/34
RA	3892	.	1	1268965	0	C	A	consensus_score=176.1	frequency=1	major_base=A	major_cov=37/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/24
RA	3893	.	1	1269887	0	T	G	consensus_score=195.1	frequency=1	major_base=G	major_cov=28/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/39
RA	3894	.	1	1270629	0	C	G	consensus_score=214.2	frequency=1	major_base=G	major_cov=31/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/39
RA	3895	.	1	1272870	0	G	A	consensus_score=91.0	frequency=1	major_base=A	major_cov=16/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/18
RA	3896	.	1	1274182	0	C	T	consensus_score=152.0	frequency=1	major_base=T	major_cov=28/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/26
RA	3897	.	1	1274619	0	G	A	consensus_score=161.5	frequency=1	major_base=A	major_cov=35/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/22
RA	3898	.	1	1274956	0	G	A	consensus_score=226.2	frequency=1	major_base=A	major_cov=40/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/38
RA	3899	.	1	1276560	0	A	G	consensus_score=183.6	frequency=1	major_base=G	major_cov=37/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/23
RA	3900	.	1	1278687	0	T	C	consensus_score=126.2	frequency=1	major_base=C	major_cov=24/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/21
RA	3901	.	1	1279797	0	A	G	consensus_score=153.8	frequency=1	major_base=G	major_cov=31/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/20
RA	3902	.	1	1283073	0	G	.	consensus_score=203.1	frequency=1	major_base=.	major_cov=25/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/23
RA	3903	.	1	1283074	0	G	.	consensus_score=203.1	frequency=1	major_base=.	major_cov=25/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/23
RA	3904	.	1	1285735	0	T	C	consensus_score=218.2	frequency=1	major_base=C	major_cov=39/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/36
RA	3905	.	1	1286084	0	G	A	consensus_score=191.4	frequency=1	major_base=A	major_cov=25/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/42
RA	3906	.	1	1287522	0	A	C	bias_e_value=1.88488e-07	bias_p_value=8.96401e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=21.9	fisher_strand_p_value=1.16216e-08	frequency=5.741e-01	ks_quality_p_value=2.23013e-07	major_base=C	major_cov=0/31	major_frequency=5.741e-01	minor_base=A	minor_cov=16/7	new_cov=0/31	polymorphism_frequency=5.741e-01	polymorphism_score=58.9	prediction=polymorphism	ref_cov=16/7	total_cov=16/38
RA	3907	.	1	1287543	0	G	A	bias_e_value=2682.06	bias_p_value=0.00127552	consensus_reject=FREQUENCY_CUTOFF	consensus_score=50.5	fisher_strand_p_value=0.000128022	frequency=3.148e-01	ks_quality_p_value=1	major_base=G	major_cov=19/18	major_frequency=6.852e-01	minor_base=A	minor_cov=0/17	new_cov=0/17	polymorphism_frequency=3.148e-01	polymorphism_score=12.8	prediction=polymorphism	ref_cov=19/18	total_cov=19/35
RA	3908	.	1	1288680	0	A	G	consensus_score=192.9	frequency=1	major_base=G	major_cov=33/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/34
RA	3909	.	1	1288737	0	T	C	consensus_score=193.6	frequency=1	major_base=C	major_cov=32/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/35
RA	3910	.	1	1289492	0	C	T	bias_e_value=1754350	bias_p_value=0.834322	consensus_score=76.3	fisher_strand_p_value=0.482759	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=15/13	major_frequency=9.655e-01	minor_base=G	minor_cov=0/1	new_cov=15/13	polymorphism_frequency=9.655e-01	polymorphism_score=-5.9	prediction=consensus	ref_cov=0/0	total_cov=15/14
RA	3911	.	1	1290999	0	T	C	consensus_score=198.8	frequency=1	major_base=C	major_cov=23/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/47
RA	3912	.	1	1291151	0	T	A	bias_e_value=125749	bias_p_value=0.0598029	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=0.6	fisher_strand_p_value=0.0700515	frequency=4.500e-01	ks_quality_p_value=0.154482	major_base=T	major_cov=31/13	major_frequency=5.500e-01	minor_base=A	minor_cov=18/18	new_cov=18/18	polymorphism_frequency=4.500e-01	polymorphism_score=122.3	prediction=polymorphism	ref_cov=31/13	total_cov=49/31
RA	3913	.	1	1291153	0	G	A	bias_e_value=530937	bias_p_value=0.2525	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=8.1	fisher_strand_p_value=0.0700515	frequency=4.500e-01	ks_quality_p_value=0.979753	major_base=G	major_cov=31/13	major_frequency=5.500e-01	minor_base=A	minor_cov=18/18	new_cov=18/18	polymorphism_frequency=4.500e-01	polymorphism_score=77.8	prediction=polymorphism	ref_cov=31/13	total_cov=49/31
RA	3914	.	1	1291157	0	T	C	bias_e_value=313562	bias_p_value=0.149122	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-0.6	fisher_strand_p_value=0.0403176	frequency=4.321e-01	ks_quality_p_value=0.84444	major_base=T	major_cov=33/13	major_frequency=5.679e-01	minor_base=C	minor_cov=17/18	new_cov=17/18	polymorphism_frequency=4.321e-01	polymorphism_score=80.7	prediction=polymorphism	ref_cov=33/13	total_cov=50/31
RA	3915	.	1	1291180	0	A	G	bias_e_value=232155	bias_p_value=0.110407	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=6.0	fisher_strand_p_value=0.0231768	frequency=5.432e-01	ks_quality_p_value=0.999757	major_base=G	major_cov=31/13	major_frequency=5.432e-01	minor_base=A	minor_cov=16/21	new_cov=31/13	polymorphism_frequency=5.432e-01	polymorphism_score=79.1	prediction=polymorphism	ref_cov=16/21	total_cov=47/34
RA	3916	.	1	1291204	0	A	G	bias_e_value=24.1716	bias_p_value=1.14954e-05	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=2.8	fisher_strand_p_value=0.0231768	frequency=5.432e-01	ks_quality_p_value=3.28742e-05	major_base=G	major_cov=31/13	major_frequency=5.432e-01	minor_base=A	minor_cov=16/21	new_cov=31/13	polymorphism_frequency=5.432e-01	polymorphism_score=80.8	prediction=polymorphism	ref_cov=16/21	total_cov=47/34
RA	3917	.	1	1291207	0	T	C	bias_e_value=226286	bias_p_value=0.107616	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=9.2	fisher_strand_p_value=0.0235712	frequency=5.500e-01	ks_quality_p_value=0.95171	major_base=C	major_cov=31/13	major_frequency=5.500e-01	minor_base=T	minor_cov=16/20	new_cov=31/13	polymorphism_frequency=5.500e-01	polymorphism_score=78.2	prediction=polymorphism	ref_cov=16/20	total_cov=47/33
RA	3918	.	1	1292804	0	A	T	bias_e_value=1018970	bias_p_value=0.484595	consensus_score=113.7	fisher_strand_p_value=0.232558	frequency=1	ks_quality_p_value=0.763837	major_base=T	major_cov=19/22	major_frequency=9.318e-01	minor_base=A	minor_cov=3/0	new_cov=19/22	polymorphism_frequency=9.318e-01	polymorphism_score=2.6	prediction=consensus	ref_cov=3/0	total_cov=22/22
RA	3919	.	1	1292808	0	T	C	bias_e_value=1085040	bias_p_value=0.516018	consensus_score=115.9	fisher_strand_p_value=0.220674	frequency=1	ks_quality_p_value=0.889882	major_base=C	major_cov=18/22	major_frequency=9.524e-01	minor_base=T	minor_cov=2/0	new_cov=18/22	polymorphism_frequency=9.524e-01	polymorphism_score=-2.8	prediction=consensus	ref_cov=2/0	total_cov=20/22
RA	3920	.	1	1292810	0	G	T	bias_e_value=1138640	bias_p_value=0.541507	consensus_score=112.1	fisher_strand_p_value=0.220674	frequency=1	ks_quality_p_value=0.962621	major_base=T	major_cov=18/22	major_frequency=9.524e-01	minor_base=G	minor_cov=2/0	new_cov=18/22	polymorphism_frequency=9.524e-01	polymorphism_score=-1.1	prediction=consensus	ref_cov=2/0	total_cov=20/22
RA	3921	.	1	1292816	0	A	T	bias_e_value=457130	bias_p_value=0.217399	consensus_score=109.0	fisher_strand_p_value=0.220674	frequency=1	ks_quality_p_value=0.253744	major_base=T	major_cov=18/22	major_frequency=9.524e-01	minor_base=A	minor_cov=2/0	new_cov=18/22	polymorphism_frequency=9.524e-01	polymorphism_score=-0.4	prediction=consensus	ref_cov=2/0	total_cov=20/22
RA	3922	.	1	1292822	0	C	T	bias_e_value=1425040	bias_p_value=0.677711	consensus_score=127.8	fisher_strand_p_value=0.489796	frequency=1	ks_quality_p_value=0.641057	major_base=T	major_cov=23/24	major_frequency=9.592e-01	minor_base=C	minor_cov=2/0	new_cov=23/24	polymorphism_frequency=9.592e-01	polymorphism_score=-2.7	prediction=consensus	ref_cov=2/0	total_cov=25/24
RA	3923	.	1	1292828	0	C	T	bias_e_value=1659260	bias_p_value=0.789099	consensus_score=124.3	fisher_strand_p_value=0.489796	frequency=1	ks_quality_p_value=0.868762	major_base=T	major_cov=23/24	major_frequency=9.592e-01	minor_base=C	minor_cov=2/0	new_cov=23/24	polymorphism_frequency=9.592e-01	polymorphism_score=-2.7	prediction=consensus	ref_cov=2/0	total_cov=25/24
RA	3924	.	1	1292831	0	G	A	bias_e_value=1505190	bias_p_value=0.715832	consensus_score=126.9	fisher_strand_p_value=0.489796	frequency=1	ks_quality_p_value=0.711468	major_base=A	major_cov=23/24	major_frequency=9.592e-01	minor_base=G	minor_cov=2/0	new_cov=23/24	polymorphism_frequency=9.592e-01	polymorphism_score=-2.3	prediction=consensus	ref_cov=2/0	total_cov=25/24
RA	3925	.	1	1292837	0	T	G	bias_e_value=1490110	bias_p_value=0.70866	consensus_score=141.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.341733	major_base=G	major_cov=25/25	major_frequency=9.804e-01	minor_base=T	minor_cov=1/0	new_cov=25/25	polymorphism_frequency=9.804e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=1/0	total_cov=26/25
RA	3926	.	1	1292843	0	C	T	consensus_score=141.4	frequency=1	major_base=T	major_cov=25/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/25
RA	3927	.	1	1292885	0	T	A	consensus_score=162.7	frequency=1	major_base=A	major_cov=26/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/29
RA	3928	.	1	1292905	0	G	A	consensus_score=174.1	frequency=1	major_base=A	major_cov=30/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/31
RA	3929	.	1	1292948	1	.	T	consensus_score=156.1	frequency=1	major_base=T	major_cov=25/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/30
RA	3930	.	1	1292953	0	C	G	consensus_score=156.3	frequency=1	major_base=G	major_cov=25/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/30
RA	3931	.	1	1292954	0	C	A	consensus_score=161.7	frequency=1	major_base=A	major_cov=25/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/30
RA	3932	.	1	1292957	0	T	A	consensus_score=152.8	frequency=1	major_base=A	major_cov=25/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/30
RA	3933	.	1	1292958	0	T	A	consensus_score=150.1	frequency=1	major_base=A	major_cov=25/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/30
RA	3934	.	1	1292960	1	.	T	bias_e_value=1188480	bias_p_value=0.565209	consensus_score=153.9	fisher_strand_p_value=0.454545	frequency=1	ks_quality_p_value=0.501796	major_base=T	major_cov=24/30	major_frequency=9.818e-01	minor_base=.	minor_cov=1/0	new_cov=24/30	polymorphism_frequency=9.818e-01	polymorphism_score=-3.2	prediction=consensus	ref_cov=1/0	total_cov=25/30
RA	3935	.	1	1292961	0	G	C	bias_e_value=1214390	bias_p_value=0.577535	consensus_score=136.8	fisher_strand_p_value=0.462963	frequency=1	ks_quality_p_value=0.510912	major_base=C	major_cov=24/29	major_frequency=9.815e-01	minor_base=T	minor_cov=1/0	new_cov=24/29	polymorphism_frequency=9.815e-01	polymorphism_score=-4.7	prediction=consensus	ref_cov=0/0	total_cov=25/30
RA	3936	.	1	1292962	0	G	A	bias_e_value=1577370	bias_p_value=0.750158	consensus_score=153.1	fisher_strand_p_value=0.454545	frequency=1	ks_quality_p_value=0.84165	major_base=A	major_cov=24/30	major_frequency=9.818e-01	minor_base=C	minor_cov=1/0	new_cov=24/30	polymorphism_frequency=9.818e-01	polymorphism_score=-3.8	prediction=consensus	ref_cov=0/0	total_cov=25/30
RA	3937	.	1	1292969	0	C	T	consensus_score=156.1	frequency=1	major_base=T	major_cov=25/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/32
RA	3938	.	1	1292997	0	A	C	consensus_score=165.1	frequency=1	major_base=C	major_cov=24/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/32
RA	3939	.	1	1293036	0	C	T	consensus_score=133.2	frequency=1	major_base=T	major_cov=22/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/25
RA	3940	.	1	1293037	0	G	A	bias_e_value=1767140	bias_p_value=0.840404	consensus_score=125.2	fisher_strand_p_value=0.491212	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=22/23	major_frequency=9.574e-01	minor_base=C	minor_cov=0/2	new_cov=22/23	polymorphism_frequency=9.574e-01	polymorphism_score=-5.3	prediction=consensus	ref_cov=0/0	total_cov=22/25
RA	3941	.	1	1293039	0	T	C	bias_e_value=2102490	bias_p_value=0.999892	consensus_score=124.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.985308	major_base=C	major_cov=22/24	major_frequency=9.787e-01	minor_base=A	minor_cov=0/1	new_cov=22/24	polymorphism_frequency=9.787e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/25
RA	3942	.	1	1293049	0	G	T	bias_e_value=2102720	bias_p_value=1	consensus_score=116.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=21/22	major_frequency=9.773e-01	minor_base=C	minor_cov=0/1	new_cov=21/22	polymorphism_frequency=9.773e-01	polymorphism_score=-6.0	prediction=consensus	ref_cov=0/0	total_cov=21/23
RA	3943	.	1	1293085	0	T	C	consensus_score=117.0	frequency=1	major_base=C	major_cov=16/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/24
RA	3944	.	1	1293861	0	C	T	consensus_score=70.0	frequency=1	major_base=T	major_cov=12/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/14
RA	3945	.	1	1293921	0	T	C	consensus_score=72.8	frequency=1	major_base=C	major_cov=13/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/12
RA	3946	.	1	1293935	0	T	C	consensus_score=73.2	frequency=1	major_base=C	major_cov=13/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/12
RA	3947	.	1	1293941	0	T	G	consensus_score=72.5	frequency=1	major_base=G	major_cov=13/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/12
RA	3948	.	1	1293969	0	C	T	consensus_score=49.6	frequency=1	major_base=T	major_cov=9/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/10
RA	3949	.	1	1293975	0	A	T	consensus_score=49.4	frequency=1	major_base=T	major_cov=8/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/10
RA	3950	.	1	1293976	0	T	C	consensus_score=47.8	frequency=1	major_base=C	major_cov=8/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/10
RA	3951	.	1	1293982	0	T	C	consensus_score=43.9	frequency=1	major_base=C	major_cov=8/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/10
RA	3952	.	1	1293986	0	C	T	consensus_score=46.9	frequency=1	major_base=T	major_cov=8/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/10
RA	3953	.	1	1293990	0	T	A	consensus_score=46.2	frequency=1	major_base=A	major_cov=8/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/10
RA	3954	.	1	1293993	0	T	G	consensus_score=48.2	frequency=1	major_base=G	major_cov=8/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/10
RA	3955	.	1	1293994	0	T	A	consensus_score=49.2	frequency=1	major_base=A	major_cov=8/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/10
RA	3956	.	1	1293995	0	T	A	consensus_score=48.6	frequency=1	major_base=A	major_cov=8/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/10
RA	3957	.	1	1294004	0	T	A	consensus_score=66.7	frequency=1	major_base=A	major_cov=11/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/13
RA	3958	.	1	1294065	0	G	A	consensus_score=84.5	frequency=1	major_base=A	major_cov=14/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/17
RA	3959	.	1	1295399	0	C	T	consensus_score=195.4	frequency=1	major_base=T	major_cov=43/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/25
RA	3960	.	1	1298362	0	A	G	consensus_score=159.0	frequency=1	major_base=G	major_cov=30/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/23
RA	3961	.	1	1298964	0	A	C	consensus_score=168.7	frequency=1	major_base=C	major_cov=31/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/28
RA	3962	.	1	1299370	0	C	T	consensus_score=205.8	frequency=1	major_base=T	major_cov=36/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/36
RA	3963	.	1	1299489	0	T	A	bias_e_value=0.0426885	bias_p_value=2.03016e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=128.8	fisher_strand_p_value=9.31511e-10	frequency=3.333e-01	ks_quality_p_value=1	major_base=T	major_cov=12/34	major_frequency=6.667e-01	minor_base=A	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=3.333e-01	polymorphism_score=16.8	prediction=polymorphism	ref_cov=12/34	total_cov=35/34
RA	3964	.	1	1299862	0	T	G	bias_e_value=238320	bias_p_value=0.113339	consensus_score=145.1	fisher_strand_p_value=0.0245749	frequency=1	ks_quality_p_value=0.974709	major_base=G	major_cov=34/28	major_frequency=9.118e-01	minor_base=T	minor_cov=0/6	new_cov=34/28	polymorphism_frequency=9.118e-01	polymorphism_score=-3.7	prediction=consensus	ref_cov=0/6	total_cov=34/34
RA	3965	.	1	1300023	0	T	C	consensus_score=209.9	frequency=1	major_base=C	major_cov=40/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/34
RA	3966	.	1	1301124	0	T	C	consensus_score=175.6	frequency=1	major_base=C	major_cov=18/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/40
RA	3967	.	1	1301737	0	C	A	bias_e_value=1196770	bias_p_value=0.569155	consensus_score=112.9	fisher_strand_p_value=0.230769	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=30/8	major_frequency=9.744e-01	minor_base=C	minor_cov=0/1	new_cov=30/8	polymorphism_frequency=9.744e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=30/9
RA	3968	.	1	1302654	0	G	T	consensus_score=258.6	frequency=1	major_base=T	major_cov=39/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/50
RA	3969	.	1	1303597	0	T	C	consensus_score=180.9	frequency=1	major_base=C	major_cov=28/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/36
RA	3970	.	1	1304273	0	A	C	consensus_score=235.2	frequency=1	major_base=C	major_cov=30/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/47
RA	3971	.	1	1304381	0	T	C	consensus_score=239.3	frequency=1	major_base=C	major_cov=39/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/44
RA	3972	.	1	1306649	0	A	G	consensus_score=182.7	frequency=1	major_base=G	major_cov=27/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/36
RA	3973	.	1	1308556	0	C	T	bias_e_value=1749500	bias_p_value=0.832019	consensus_score=214.5	fisher_strand_p_value=0.481013	frequency=1	ks_quality_p_value=0.997083	major_base=T	major_cov=37/41	major_frequency=9.873e-01	minor_base=C	minor_cov=1/0	new_cov=37/41	polymorphism_frequency=9.873e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=38/41
RA	3974	.	1	1308647	0	G	A	bias_e_value=1768560	bias_p_value=0.841081	consensus_score=196.9	fisher_strand_p_value=0.492958	frequency=1	ks_quality_p_value=0.998392	major_base=A	major_cov=34/36	major_frequency=9.859e-01	minor_base=G	minor_cov=1/0	new_cov=34/36	polymorphism_frequency=9.859e-01	polymorphism_score=-5.7	prediction=consensus	ref_cov=1/0	total_cov=35/36
RA	3975	.	1	1309177	0	A	C	consensus_score=237.5	frequency=1	major_base=C	major_cov=32/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/51
RA	3976	.	1	1310958	0	C	T	consensus_score=285.9	frequency=1	major_base=T	major_cov=46/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/53
RA	3977	.	1	1311469	0	G	A	consensus_score=253.9	frequency=1	major_base=A	major_cov=40/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/45
RA	3978	.	1	1311622	0	A	G	consensus_score=262.4	frequency=1	major_base=G	major_cov=47/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/38
RA	3979	.	1	1312495	0	G	A	consensus_score=244.2	frequency=1	major_base=A	major_cov=41/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/43
RA	3980	.	1	1312558	0	C	G	consensus_score=243.5	frequency=1	major_base=G	major_cov=38/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/47
RA	3981	.	1	1313197	0	T	C	consensus_score=261.6	frequency=1	major_base=C	major_cov=46/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/43
RA	3982	.	1	1314484	0	C	T	consensus_score=152.1	frequency=1	major_base=T	major_cov=8/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/47
RA	3983	.	1	1314631	0	C	T	bias_e_value=2102720	bias_p_value=1	consensus_score=206.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=33/42	major_frequency=9.868e-01	minor_base=C	minor_cov=0/1	new_cov=33/42	polymorphism_frequency=9.868e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=33/43
RA	3984	.	1	1315673	0	C	T	consensus_score=294.2	frequency=1	major_base=T	major_cov=45/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/52
RA	3985	.	1	1315790	0	C	T	consensus_score=300.0	frequency=1	major_base=T	major_cov=46/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/57
RA	3986	.	1	1318504	0	C	.	consensus_score=106.3	frequency=1	major_base=.	major_cov=12/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/14
RA	3987	.	1	1319320	0	G	A	consensus_score=241.8	frequency=1	major_base=A	major_cov=48/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/35
RA	3988	.	1	1319479	0	C	.	consensus_score=425.3	frequency=1	major_base=.	major_cov=49/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/51
RA	3989	.	1	1320419	0	C	T	bias_e_value=91614.2	bias_p_value=0.0435694	consensus_score=179.7	fisher_strand_p_value=0.00737207	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=24/45	major_frequency=9.324e-01	minor_base=C	minor_cov=5/0	new_cov=24/45	polymorphism_frequency=9.324e-01	polymorphism_score=NA	prediction=consensus	ref_cov=5/0	total_cov=29/45
RA	3990	.	1	1322843	0	T	C	consensus_score=286.1	frequency=1	major_base=C	major_cov=50/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/48
RA	3991	.	1	1322888	0	T	G	consensus_score=295.4	frequency=1	major_base=G	major_cov=48/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/51
RA	3992	.	1	1324494	0	T	C	consensus_score=240.6	frequency=1	major_base=C	major_cov=42/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/41
RA	3993	.	1	1325383	0	A	C	consensus_score=222.7	frequency=1	major_base=C	major_cov=41/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/34
RA	3994	.	1	1328837	0	G	A	consensus_score=264.0	frequency=1	major_base=A	major_cov=52/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/40
RA	3995	.	1	1328903	0	A	C	consensus_score=263.2	frequency=1	major_base=C	major_cov=47/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/41
RA	3996	.	1	1329321	0	T	C	consensus_score=230.4	frequency=1	major_base=C	major_cov=39/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/38
RA	3997	.	1	1330606	0	C	T	consensus_score=195.9	frequency=1	major_base=T	major_cov=29/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/39
RA	3998	.	1	1330965	0	G	A	bias_e_value=1.26634	bias_p_value=6.02241e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=94.2	fisher_strand_p_value=3.39029e-08	frequency=2.836e-01	ks_quality_p_value=0.974665	major_base=G	major_cov=14/34	major_frequency=7.164e-01	minor_base=A	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.836e-01	polymorphism_score=13.5	prediction=polymorphism	ref_cov=14/34	total_cov=33/34
RA	3999	.	1	1331008	0	T	A	bias_e_value=96.0155	bias_p_value=4.56625e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=157.9	fisher_strand_p_value=3.35639e-06	frequency=2.338e-01	ks_quality_p_value=1	major_base=T	major_cov=24/35	major_frequency=7.662e-01	minor_base=A	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.338e-01	polymorphism_score=10.2	prediction=polymorphism	ref_cov=24/35	total_cov=42/35
RA	4000	.	1	1331455	0	A	G	consensus_score=234.2	frequency=1	major_base=G	major_cov=29/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/52
RA	4001	.	1	1332061	0	C	T	consensus_score=237.6	frequency=1	major_base=T	major_cov=36/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/46
RA	4002	.	1	1332195	0	G	T	bias_e_value=0.000295877	bias_p_value=1.40712e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=166.1	fisher_strand_p_value=5.64324e-12	frequency=2.759e-01	ks_quality_p_value=0.924208	major_base=G	major_cov=14/49	major_frequency=7.241e-01	minor_base=T	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.759e-01	polymorphism_score=16.6	prediction=polymorphism	ref_cov=14/49	total_cov=40/49
RA	4003	.	1	1332215	0	G	C	bias_e_value=2.44564e-05	bias_p_value=1.16308e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=160.9	fisher_strand_p_value=3.93413e-13	frequency=2.921e-01	ks_quality_p_value=1	major_base=G	major_cov=13/50	major_frequency=7.079e-01	minor_base=C	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=2.921e-01	polymorphism_score=25.5	prediction=polymorphism	ref_cov=13/50	total_cov=39/50
RA	4004	.	1	1332261	0	G	C	bias_e_value=0.589653	bias_p_value=2.80424e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=191.3	fisher_strand_p_value=1.47335e-08	frequency=2.159e-01	ks_quality_p_value=1	major_base=G	major_cov=21/48	major_frequency=7.841e-01	minor_base=C	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.159e-01	polymorphism_score=11.9	prediction=polymorphism	ref_cov=21/48	total_cov=40/48
RA	4005	.	1	1333536	0	T	C	bias_e_value=1478750	bias_p_value=0.703257	consensus_score=288.0	fisher_strand_p_value=0.336735	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=65/32	major_frequency=9.898e-01	minor_base=A	minor_cov=0/1	new_cov=65/32	polymorphism_frequency=9.898e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/33
RA	4006	.	1	1334312	0	G	T	consensus_score=306.9	frequency=1	major_base=T	major_cov=49/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/56
RA	4007	.	1	1334451	0	A	G	bias_e_value=2050690	bias_p_value=0.975255	consensus_score=317.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.785946	major_base=G	major_cov=44/65	major_frequency=9.909e-01	minor_base=.	minor_cov=0/1	new_cov=44/65	polymorphism_frequency=9.909e-01	polymorphism_score=-3.0	prediction=consensus	ref_cov=0/0	total_cov=44/66
RA	4008	.	1	1336214	0	C	A	consensus_score=259.9	frequency=1	major_base=A	major_cov=39/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/48
RA	4009	.	1	1336874	0	C	A	bias_e_value=738822	bias_p_value=0.351365	consensus_score=255.7	fisher_strand_p_value=0.109351	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=48/42	major_frequency=9.677e-01	minor_base=C	minor_cov=0/3	new_cov=48/42	polymorphism_frequency=9.677e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/3	total_cov=48/45
RA	4010	.	1	1337265	0	G	A	consensus_score=179.0	frequency=1	major_base=A	major_cov=23/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/38
RA	4011	.	1	1338149	0	C	T	bias_e_value=1758850	bias_p_value=0.836465	consensus_score=315.7	fisher_strand_p_value=0.485714	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=54/50	major_frequency=9.905e-01	minor_base=A	minor_cov=0/1	new_cov=54/50	polymorphism_frequency=9.905e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/51
RA	4012	.	1	1339161	1	.	T	consensus_score=209.0	frequency=1	major_base=T	major_cov=45/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/27
RA	4013	.	1	1340112	1	.	C	bias_e_value=2102720	bias_p_value=1	consensus_score=216.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=50/24	major_frequency=9.867e-01	minor_base=T	minor_cov=1/0	new_cov=50/24	polymorphism_frequency=9.867e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=52/24
RA	4014	.	1	1341761	0	T	C	consensus_score=250.3	frequency=1	major_base=C	major_cov=39/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/47
RA	4015	.	1	1341808	0	C	T	consensus_score=234.5	frequency=1	major_base=T	major_cov=35/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/46
RA	4016	.	1	1342447	0	A	C	consensus_score=431.0	frequency=1	major_base=C	major_cov=60/88	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/88	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/88
RA	4017	.	1	1343208	0	C	T	consensus_score=263.9	frequency=1	major_base=T	major_cov=42/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/50
RA	4018	.	1	1343451	0	C	A	consensus_score=347.6	frequency=1	major_base=A	major_cov=47/69	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/69	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/69
RA	4019	.	1	1344975	0	G	C	consensus_score=314.5	frequency=1	major_base=C	major_cov=51/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/54
RA	4020	.	1	1346790	0	G	A	consensus_score=334.7	frequency=1	major_base=A	major_cov=54/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/61
RA	4021	.	1	1346829	0	A	G	consensus_score=335.3	frequency=1	major_base=G	major_cov=56/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/52
RA	4022	.	1	1346970	0	C	T	consensus_score=272.5	frequency=1	major_base=T	major_cov=59/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/33
RA	4023	.	1	1347686	0	A	G	consensus_score=215.7	frequency=1	major_base=G	major_cov=37/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/33
RA	4024	.	1	1348116	0	T	C	bias_e_value=1513120	bias_p_value=0.7196	consensus_score=327.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.352066	major_base=C	major_cov=52/61	major_frequency=9.912e-01	minor_base=T	minor_cov=0/1	new_cov=52/61	polymorphism_frequency=9.912e-01	polymorphism_score=-5.4	prediction=consensus	ref_cov=0/1	total_cov=52/62
RA	4025	.	1	1348723	0	A	C	bias_e_value=6.16353e-05	bias_p_value=2.93122e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=145.0	fisher_strand_p_value=1.02466e-12	frequency=3.333e-01	ks_quality_p_value=1	major_base=A	major_cov=45/15	major_frequency=6.667e-01	minor_base=C	minor_cov=0/30	new_cov=0/30	polymorphism_frequency=3.333e-01	polymorphism_score=15.0	prediction=polymorphism	ref_cov=45/15	total_cov=45/46
RA	4026	.	1	1350391	0	C	T	consensus_score=212.2	frequency=1	major_base=T	major_cov=38/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/36
RA	4027	.	1	1351926	0	T	C	consensus_score=240.0	frequency=1	major_base=C	major_cov=37/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/46
RA	4028	.	1	1352085	0	T	C	consensus_score=317.6	frequency=1	major_base=C	major_cov=49/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/55
RA	4029	.	1	1354541	0	T	C	consensus_score=243.8	frequency=1	major_base=C	major_cov=38/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/46
RA	4030	.	1	1354544	0	A	C	consensus_score=238.7	frequency=1	major_base=C	major_cov=38/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/46
RA	4031	.	1	1355640	0	A	G	consensus_score=158.1	frequency=1	major_base=G	major_cov=23/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/31
RA	4032	.	1	1356250	0	T	C	consensus_score=311.6	frequency=1	major_base=C	major_cov=59/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/46
RA	4033	.	1	1358263	0	A	G	bias_e_value=771748	bias_p_value=0.367024	consensus_score=257.3	fisher_strand_p_value=0.116621	frequency=1	ks_quality_p_value=0.999216	major_base=G	major_cov=45/41	major_frequency=9.663e-01	minor_base=A	minor_cov=0/3	new_cov=45/41	polymorphism_frequency=9.663e-01	polymorphism_score=-6.1	prediction=consensus	ref_cov=0/3	total_cov=45/44
RA	4034	.	1	1358902	0	A	G	consensus_score=135.1	frequency=1	major_base=G	major_cov=39/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/9
RA	4035	.	1	1360672	1	.	T	bias_e_value=1606080	bias_p_value=0.76381	consensus_score=189.4	fisher_strand_p_value=0.397059	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=41/26	major_frequency=9.853e-01	minor_base=G	minor_cov=0/1	new_cov=41/26	polymorphism_frequency=9.853e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/28
RA	4036	.	1	1361427	0	C	T	consensus_score=165.5	frequency=1	major_base=T	major_cov=16/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/39
RA	4037	.	1	1362061	0	G	A	consensus_score=139.1	frequency=1	major_base=A	major_cov=18/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/29
RA	4038	.	1	1362154	0	C	T	consensus_score=66.0	frequency=1	major_base=T	major_cov=13/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/11
RA	4039	.	1	1363240	0	T	C	consensus_score=193.4	frequency=1	major_base=C	major_cov=28/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/36
RA	4040	.	1	1364285	0	A	G	bias_e_value=484988	bias_p_value=0.230648	consensus_score=197.7	fisher_strand_p_value=0.0607526	frequency=1	ks_quality_p_value=0.998417	major_base=G	major_cov=40/37	major_frequency=9.390e-01	minor_base=C	minor_cov=5/0	new_cov=40/37	polymorphism_frequency=9.390e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=0/0	total_cov=45/37
RA	4041	.	1	1364940	0	C	T	consensus_score=190.3	frequency=1	major_base=T	major_cov=37/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/29
RA	4042	.	1	1366707	0	C	T	consensus_score=175.8	frequency=1	major_base=T	major_cov=28/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/33
RA	4043	.	1	1366794	0	C	T	consensus_score=190.8	frequency=1	major_base=T	major_cov=31/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/33
RA	4044	.	1	1368529	0	C	T	consensus_score=187.4	frequency=1	major_base=T	major_cov=24/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/44
RA	4045	.	1	1371351	0	G	T	bias_e_value=0.0890618	bias_p_value=4.23555e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=124.6	fisher_strand_p_value=2.01474e-09	frequency=2.787e-01	ks_quality_p_value=1	major_base=G	major_cov=36/8	major_frequency=7.213e-01	minor_base=T	minor_cov=0/17	new_cov=0/17	polymorphism_frequency=2.787e-01	polymorphism_score=12.0	prediction=polymorphism	ref_cov=36/8	total_cov=36/27
RA	4046	.	1	1371357	0	C	A	bias_e_value=0.0341171	bias_p_value=1.62252e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=108.5	fisher_strand_p_value=7.47542e-10	frequency=3.115e-01	ks_quality_p_value=0.985277	major_base=C	major_cov=34/8	major_frequency=6.885e-01	minor_base=A	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=3.115e-01	polymorphism_score=13.3	prediction=polymorphism	ref_cov=34/8	total_cov=34/27
RA	4047	.	1	1373736	0	T	G	consensus_score=172.2	frequency=1	major_base=G	major_cov=24/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/33
RA	4048	.	1	1374121	0	C	T	consensus_score=214.5	frequency=1	major_base=T	major_cov=27/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/44
RA	4049	.	1	1374633	0	A	G	consensus_score=184.8	frequency=1	major_base=G	major_cov=24/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/38
RA	4050	.	1	1375157	0	G	T	consensus_score=189.4	frequency=1	major_base=T	major_cov=29/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/37
RA	4051	.	1	1375245	0	C	T	bias_e_value=1645510	bias_p_value=0.782562	consensus_score=152.1	fisher_strand_p_value=0.433333	frequency=1	ks_quality_p_value=0.964488	major_base=T	major_cov=25/34	major_frequency=9.833e-01	minor_base=C	minor_cov=1/0	new_cov=25/34	polymorphism_frequency=9.833e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=26/34
RA	4052	.	1	1375892	0	C	A	consensus_score=191.1	frequency=1	major_base=A	major_cov=31/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/36
RA	4053	.	1	1377602	0	C	T	consensus_score=201.7	frequency=1	major_base=T	major_cov=44/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/25
RA	4054	.	1	1378089	0	T	C	consensus_score=216.9	frequency=1	major_base=C	major_cov=35/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/40
RA	4055	.	1	1379215	0	G	A	bias_e_value=0.388187	bias_p_value=1.84612e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=124.1	fisher_strand_p_value=1.08472e-08	frequency=2.400e-01	ks_quality_p_value=0.873946	major_base=G	major_cov=15/42	major_frequency=7.600e-01	minor_base=A	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.400e-01	polymorphism_score=11.6	prediction=polymorphism	ref_cov=15/42	total_cov=33/42
RA	4056	.	1	1379230	0	G	A	bias_e_value=1724150	bias_p_value=0.819962	consensus_score=173.2	fisher_strand_p_value=0.463768	frequency=1	ks_quality_p_value=0.999574	major_base=A	major_cov=31/37	major_frequency=9.855e-01	minor_base=C	minor_cov=1/0	new_cov=31/37	polymorphism_frequency=9.855e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/37
RA	4057	.	1	1379985	0	A	G	bias_e_value=1572430	bias_p_value=0.747806	consensus_score=203.8	fisher_strand_p_value=0.380282	frequency=1	ks_quality_p_value=0.999598	major_base=G	major_cov=26/44	major_frequency=9.859e-01	minor_base=T	minor_cov=1/0	new_cov=26/44	polymorphism_frequency=9.859e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/44
RA	4058	.	1	1382661	0	T	G	consensus_score=248.5	frequency=1	major_base=G	major_cov=44/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/42
RA	4059	.	1	1382739	0	A	G	consensus_score=295.3	frequency=1	major_base=G	major_cov=56/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/45
RA	4060	.	1	1383403	0	A	C	consensus_score=306.6	frequency=1	major_base=C	major_cov=47/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/59
RA	4061	.	1	1384590	0	C	T	consensus_score=148.2	frequency=1	major_base=T	major_cov=6/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/43
RA	4062	.	1	1384636	0	A	G	consensus_score=124.0	frequency=1	major_base=G	major_cov=1/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=1/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=1/42
RA	4063	.	1	1385336	0	A	G	consensus_score=286.8	frequency=1	major_base=G	major_cov=37/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/56
RA	4064	.	1	1385337	0	C	T	consensus_score=267.0	frequency=1	major_base=T	major_cov=37/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/56
RA	4065	.	1	1387390	0	G	A	consensus_score=158.2	frequency=1	major_base=A	major_cov=29/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/27
RA	4066	.	1	1390021	0	G	A	consensus_score=236.5	frequency=1	major_base=A	major_cov=42/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/42
RA	4067	.	1	1391190	0	A	G	consensus_score=157.2	frequency=1	major_base=G	major_cov=27/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/29
RA	4068	.	1	1392114	0	C	T	bias_e_value=553.032	bias_p_value=0.000263008	consensus_reject=FREQUENCY_CUTOFF	consensus_score=112.0	fisher_strand_p_value=2.24732e-05	frequency=2.388e-01	ks_quality_p_value=1	major_base=C	major_cov=29/22	major_frequency=7.612e-01	minor_base=T	minor_cov=0/16	new_cov=0/16	polymorphism_frequency=2.388e-01	polymorphism_score=10.0	prediction=polymorphism	ref_cov=29/22	total_cov=29/38
RA	4069	.	1	1393407	0	G	A	consensus_score=164.9	frequency=1	major_base=A	major_cov=34/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/25
RA	4070	.	1	1396169	0	A	G	consensus_score=159.4	frequency=1	major_base=G	major_cov=28/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/28
RA	4071	.	1	1398006	0	C	T	consensus_score=198.4	frequency=1	major_base=T	major_cov=34/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/33
RA	4072	.	1	1398091	0	A	G	consensus_score=182.6	frequency=1	major_base=G	major_cov=30/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/33
RA	4073	.	1	1400210	0	T	C	consensus_score=163.4	frequency=1	major_base=C	major_cov=29/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/28
RA	4074	.	1	1400825	0	C	A	consensus_score=82.5	frequency=1	major_base=A	major_cov=23/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/7
RA	4075	.	1	1401226	0	C	T	consensus_score=102.2	frequency=1	major_base=T	major_cov=18/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/19
RA	4076	.	1	1401397	0	C	T	consensus_score=114.4	frequency=1	major_base=T	major_cov=12/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/29
RA	4077	.	1	1401661	0	T	C	consensus_score=245.9	frequency=1	major_base=C	major_cov=41/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/38
RA	4078	.	1	1403449	0	C	T	consensus_score=247.0	frequency=1	major_base=T	major_cov=48/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/37
RA	4079	.	1	1404242	0	A	G	consensus_score=236.6	frequency=1	major_base=G	major_cov=46/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/37
RA	4080	.	1	1406496	0	A	G	consensus_score=160.6	frequency=1	major_base=G	major_cov=32/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/21
RA	4081	.	1	1406712	0	G	A	consensus_score=225.7	frequency=1	major_base=A	major_cov=34/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/45
RA	4082	.	1	1407363	0	G	A	consensus_score=205.7	frequency=1	major_base=A	major_cov=42/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/29
RA	4083	.	1	1408584	0	G	A	consensus_score=89.9	frequency=1	major_base=A	major_cov=13/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/19
RA	4084	.	1	1409574	0	T	C	consensus_score=134.4	frequency=1	major_base=C	major_cov=21/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/27
RA	4085	.	1	1410339	0	C	T	consensus_score=61.0	frequency=1	major_base=T	major_cov=12/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/11
RA	4086	.	1	1410536	0	G	T	consensus_score=159.6	frequency=1	major_base=T	major_cov=27/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/27
RA	4087	.	1	1410750	0	G	T	consensus_score=41.2	frequency=1	major_base=T	major_cov=6/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/10
RA	4088	.	1	1411556	0	A	G	consensus_score=202.5	frequency=1	major_base=G	major_cov=32/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/36
RA	4089	.	1	1412627	0	G	A	consensus_score=269.4	frequency=1	major_base=A	major_cov=42/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/49
RA	4090	.	1	1418345	0	T	C	consensus_score=12.2	deleted=1	frequency=1	major_base=C	major_cov=4/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/2
RA	4091	.	1	1418442	0	T	C	consensus_score=60.6	deleted=1	frequency=1	major_base=C	major_cov=17/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/6
RA	4092	.	1	1419349	0	T	C	consensus_score=226.5	frequency=1	major_base=C	major_cov=38/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/37
RA	4093	.	1	1421702	0	T	C	consensus_score=184.3	frequency=1	major_base=C	major_cov=27/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/37
RA	4094	.	1	1422733	0	T	G	consensus_score=237.2	frequency=1	major_base=G	major_cov=39/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/42
RA	4095	.	1	1423239	0	G	A	consensus_score=191.1	frequency=1	major_base=A	major_cov=38/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/29
RA	4096	.	1	1423379	0	C	T	consensus_score=219.5	frequency=1	major_base=T	major_cov=46/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/28
RA	4097	.	1	1427036	0	T	G	consensus_score=206.6	frequency=1	major_base=G	major_cov=45/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/28
RA	4098	.	1	1427584	0	G	A	consensus_score=191.4	frequency=1	major_base=A	major_cov=29/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/37
RA	4099	.	1	1428608	0	G	T	consensus_score=208.4	frequency=1	major_base=T	major_cov=41/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/31
RA	4100	.	1	1429522	0	G	A	consensus_score=243.6	frequency=1	major_base=A	major_cov=52/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/35
RA	4101	.	1	1431530	0	A	C	consensus_score=182.2	frequency=1	major_base=C	major_cov=27/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/36
RA	4102	.	1	1438078	0	T	C	consensus_score=268.5	frequency=1	major_base=C	major_cov=44/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/48
RA	4103	.	1	1438404	0	C	T	consensus_score=58.9	frequency=1	major_base=T	major_cov=8/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/14
RA	4104	.	1	1438607	0	T	C	consensus_score=109.9	frequency=1	major_base=C	major_cov=18/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/19
RA	4105	.	1	1439327	0	G	A	consensus_score=61.6	frequency=1	major_base=A	major_cov=10/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/13
RA	4106	.	1	1442452	0	A	C	consensus_score=149.7	frequency=1	major_base=C	major_cov=26/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/26
RA	4107	.	1	1442937	0	A	T	bias_e_value=798.05	bias_p_value=0.000379532	consensus_reject=FREQUENCY_CUTOFF	consensus_score=72.4	fisher_strand_p_value=3.35824e-05	frequency=3.182e-01	ks_quality_p_value=1	major_base=A	major_cov=20/10	major_frequency=6.818e-01	minor_base=T	minor_cov=0/14	new_cov=0/14	polymorphism_frequency=3.182e-01	polymorphism_score=13.6	prediction=polymorphism	ref_cov=20/10	total_cov=20/24
RA	4108	.	1	1443086	0	C	T	consensus_score=142.8	frequency=1	major_base=T	major_cov=22/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/29
RA	4109	.	1	1443613	0	A	G	consensus_score=220.6	frequency=1	major_base=G	major_cov=35/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/41
RA	4110	.	1	1443923	0	T	C	consensus_score=288.7	frequency=1	major_base=C	major_cov=58/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/36
RA	4111	.	1	1444651	0	G	A	consensus_score=159.5	frequency=1	major_base=A	major_cov=31/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/25
RA	4112	.	1	1445075	0	T	C	consensus_score=193.8	frequency=1	major_base=C	major_cov=31/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/36
RA	4113	.	1	1446115	0	A	T	consensus_score=91.3	frequency=1	major_base=T	major_cov=17/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/16
RA	4114	.	1	1446117	0	A	G	consensus_score=97.4	frequency=1	major_base=G	major_cov=17/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/16
RA	4115	.	1	1446121	0	C	T	consensus_score=87.3	frequency=1	major_base=T	major_cov=17/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/16
RA	4116	.	1	1446168	0	A	G	consensus_score=64.8	frequency=1	major_base=G	major_cov=15/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/9
RA	4117	.	1	1446171	0	T	C	consensus_score=66.3	frequency=1	major_base=C	major_cov=15/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/9
RA	4118	.	1	1449085	0	A	C	consensus_score=123.1	frequency=1	major_base=C	major_cov=24/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/20
RA	4119	.	1	1450473	0	T	C	consensus_score=174.6	frequency=1	major_base=C	major_cov=30/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/32
RA	4120	.	1	1452171	0	C	G	bias_e_value=1693480	bias_p_value=0.805376	consensus_reject=FREQUENCY_CUTOFF	consensus_score=132.3	fisher_strand_p_value=0.489012	frequency=3.214e-01	ks_quality_p_value=0.91017	major_base=C	major_cov=31/26	major_frequency=6.786e-01	minor_base=G	minor_cov=17/10	new_cov=17/10	polymorphism_frequency=3.214e-01	polymorphism_score=77.9	prediction=polymorphism	ref_cov=31/26	total_cov=48/36
RA	4121	.	1	1452246	0	C	T	bias_e_value=1609530	bias_p_value=0.76545	consensus_reject=FREQUENCY_CUTOFF	consensus_score=37.3	fisher_strand_p_value=0.699419	frequency=4.495e-01	ks_quality_p_value=0.570243	major_base=C	major_cov=31/29	major_frequency=5.505e-01	minor_base=T	minor_cov=28/21	new_cov=28/21	polymorphism_frequency=4.495e-01	polymorphism_score=101.8	prediction=polymorphism	ref_cov=31/29	total_cov=59/50
RA	4122	.	1	1452249	0	A	G	bias_e_value=728188	bias_p_value=0.346308	consensus_reject=FREQUENCY_CUTOFF	consensus_score=26.8	fisher_strand_p_value=0.12705	frequency=4.815e-01	ks_quality_p_value=0.842786	major_base=A	major_cov=26/30	major_frequency=5.185e-01	minor_base=G	minor_cov=32/20	new_cov=32/20	polymorphism_frequency=4.815e-01	polymorphism_score=103.5	prediction=polymorphism	ref_cov=26/30	total_cov=58/50
RA	4123	.	1	1452303	0	A	G	bias_e_value=9428.09	bias_p_value=0.00448376	consensus_reject=FREQUENCY_CUTOFF	consensus_score=33.6	fisher_strand_p_value=0.703762	frequency=5.877e-01	ks_quality_p_value=0.000744843	major_base=G	major_cov=35/32	major_frequency=5.877e-01	minor_base=A	minor_cov=22/25	new_cov=35/32	polymorphism_frequency=5.877e-01	polymorphism_score=100.3	prediction=polymorphism	ref_cov=22/25	total_cov=58/58
RA	4124	.	1	1452350	0	T	C	bias_e_value=1564990	bias_p_value=0.744271	consensus_reject=FREQUENCY_CUTOFF	consensus_score=85.1	fisher_strand_p_value=0.836889	frequency=3.495e-01	ks_quality_p_value=0.44987	major_base=T	major_cov=34/33	major_frequency=6.505e-01	minor_base=C	minor_cov=17/19	new_cov=17/19	polymorphism_frequency=3.495e-01	polymorphism_score=64.1	prediction=polymorphism	ref_cov=34/33	total_cov=53/52
RA	4125	.	1	1452351	0	C	A	bias_e_value=767960	bias_p_value=0.365222	consensus_reject=FREQUENCY_CUTOFF	consensus_score=109.5	fisher_strand_p_value=0.30745	frequency=3.271e-01	ks_quality_p_value=0.3763	major_base=C	major_cov=39/33	major_frequency=6.729e-01	minor_base=A	minor_cov=15/20	new_cov=15/20	polymorphism_frequency=3.271e-01	polymorphism_score=81.2	prediction=polymorphism	ref_cov=39/33	total_cov=55/53
RA	4126	.	1	1452352	0	C	A	bias_e_value=248231	bias_p_value=0.118052	consensus_reject=FREQUENCY_CUTOFF	consensus_score=106.0	fisher_strand_p_value=0.215014	frequency=3.333e-01	ks_quality_p_value=0.117319	major_base=C	major_cov=38/32	major_frequency=6.667e-01	minor_base=A	minor_cov=14/21	new_cov=14/21	polymorphism_frequency=3.333e-01	polymorphism_score=77.4	prediction=polymorphism	ref_cov=38/32	total_cov=55/53
RA	4127	.	1	1453588	0	G	A	consensus_score=284.4	frequency=1	major_base=A	major_cov=46/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/52
RA	4128	.	1	1455230	0	A	G	consensus_score=189.0	frequency=1	major_base=G	major_cov=36/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/31
RA	4129	.	1	1455704	0	C	T	consensus_score=230.4	frequency=1	major_base=T	major_cov=36/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/44
RA	4130	.	1	1456333	0	G	C	bias_e_value=1603700	bias_p_value=0.762677	consensus_score=132.8	fisher_strand_p_value=0.395833	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=29/18	major_frequency=9.792e-01	minor_base=G	minor_cov=0/1	new_cov=29/18	polymorphism_frequency=9.792e-01	polymorphism_score=-6.2	prediction=consensus	ref_cov=0/1	total_cov=29/19
RA	4131	.	1	1457698	0	C	T	bias_e_value=0.000996286	bias_p_value=4.73808e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=78.7	fisher_strand_p_value=1.84237e-11	frequency=3.521e-01	ks_quality_p_value=1	major_base=C	major_cov=36/10	major_frequency=6.479e-01	minor_base=T	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=3.521e-01	polymorphism_score=21.0	prediction=polymorphism	ref_cov=36/10	total_cov=36/35
RA	4132	.	1	1457888	0	C	G	consensus_score=214.3	frequency=1	major_base=G	major_cov=31/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/39
RA	4133	.	1	1459088	0	A	G	consensus_score=185.7	frequency=1	major_base=G	major_cov=31/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/30
RA	4134	.	1	1460111	0	T	C	bias_e_value=748148	bias_p_value=0.3558	consensus_score=232.6	fisher_strand_p_value=0.341463	frequency=1	ks_quality_p_value=0.326134	major_base=C	major_cov=27/54	major_frequency=9.878e-01	minor_base=T	minor_cov=1/0	new_cov=27/54	polymorphism_frequency=9.878e-01	polymorphism_score=-5.0	prediction=consensus	ref_cov=1/0	total_cov=28/54
RA	4135	.	1	1460458	0	C	T	consensus_score=205.5	frequency=1	major_base=T	major_cov=40/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/32
RA	4136	.	1	1461567	0	A	G	consensus_score=75.1	frequency=1	major_base=G	major_cov=12/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/14
RA	4137	.	1	1463370	0	A	G	consensus_score=187.9	frequency=1	major_base=G	major_cov=40/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/27
RA	4138	.	1	1465162	0	A	T	consensus_score=179.4	frequency=1	major_base=T	major_cov=22/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/41
RA	4139	.	1	1466173	0	A	T	bias_e_value=0.0533089	bias_p_value=2.53524e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=102.4	fisher_strand_p_value=1.17583e-09	frequency=2.549e-01	ks_quality_p_value=1	major_base=A	major_cov=35/3	major_frequency=7.451e-01	minor_base=T	minor_cov=0/13	new_cov=0/13	polymorphism_frequency=2.549e-01	polymorphism_score=11.4	prediction=polymorphism	ref_cov=35/3	total_cov=35/16
RA	4140	.	1	1466718	0	A	G	consensus_score=225.0	frequency=1	major_base=G	major_cov=33/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/46
RA	4141	.	1	1466925	0	A	G	bias_e_value=1592770	bias_p_value=0.757481	consensus_score=222.5	fisher_strand_p_value=0.4375	frequency=1	ks_quality_p_value=0.892043	major_base=G	major_cov=34/45	major_frequency=9.875e-01	minor_base=A	minor_cov=1/0	new_cov=34/45	polymorphism_frequency=9.875e-01	polymorphism_score=-4.7	prediction=consensus	ref_cov=1/0	total_cov=35/45
RA	4142	.	1	1470489	0	G	T	consensus_score=176.0	frequency=1	major_base=T	major_cov=38/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/25
RA	4143	.	1	1470540	0	G	A	bias_e_value=2102720	bias_p_value=1	consensus_score=215.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=43/32	major_frequency=9.868e-01	minor_base=G	minor_cov=1/0	new_cov=43/32	polymorphism_frequency=9.868e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=44/32
RA	4144	.	1	1470907	0	T	G	consensus_score=213.7	frequency=1	major_base=G	major_cov=41/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/34
RA	4145	.	1	1471128	0	T	C	consensus_score=255.9	frequency=1	major_base=C	major_cov=40/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/44
RA	4146	.	1	1472275	0	T	G	consensus_score=178.0	frequency=1	major_base=G	major_cov=27/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/35
RA	4147	.	1	1475047	0	T	G	consensus_score=163.1	frequency=1	major_base=G	major_cov=24/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/30
RA	4148	.	1	1475793	0	G	A	consensus_score=167.3	frequency=1	major_base=A	major_cov=22/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/36
RA	4149	.	1	1476192	0	A	G	consensus_score=235.5	frequency=1	major_base=G	major_cov=36/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/42
RA	4150	.	1	1476331	0	C	T	bias_e_value=2102710	bias_p_value=0.999998	consensus_score=260.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.997805	major_base=T	major_cov=39/51	major_frequency=9.890e-01	minor_base=C	minor_cov=0/1	new_cov=39/51	polymorphism_frequency=9.890e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=39/53
RA	4151	.	1	1476702	0	C	T	consensus_score=176.2	frequency=1	major_base=T	major_cov=29/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/34
RA	4152	.	1	1476790	0	A	C	bias_e_value=0.0471037	bias_p_value=2.24013e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=80.9	fisher_strand_p_value=1.03275e-09	frequency=4.328e-01	ks_quality_p_value=1	major_base=A	major_cov=26/12	major_frequency=5.672e-01	minor_base=C	minor_cov=0/29	new_cov=0/29	polymorphism_frequency=4.328e-01	polymorphism_score=14.9	prediction=polymorphism	ref_cov=26/12	total_cov=26/42
RA	4153	.	1	1477120	0	A	C	consensus_score=151.1	frequency=1	major_base=C	major_cov=27/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/23
RA	4154	.	1	1478620	0	G	A	consensus_score=245.5	frequency=1	major_base=A	major_cov=45/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/42
RA	4155	.	1	1478891	0	T	G	consensus_score=129.1	frequency=1	major_base=G	major_cov=27/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/16
RA	4156	.	1	1481042	0	G	A	consensus_score=239.6	frequency=1	major_base=A	major_cov=38/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/46
RA	4157	.	1	1481064	0	A	C	consensus_score=251.8	frequency=1	major_base=C	major_cov=38/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/43
RA	4158	.	1	1481781	0	G	T	bias_e_value=2102720	bias_p_value=1	consensus_score=285.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=48/51	major_frequency=9.900e-01	minor_base=G	minor_cov=0/1	new_cov=48/51	polymorphism_frequency=9.900e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=48/52
RA	4159	.	1	1485315	0	C	T	consensus_score=173.9	frequency=1	major_base=T	major_cov=29/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/29
RA	4160	.	1	1489764	0	T	C	consensus_score=205.0	frequency=1	major_base=C	major_cov=29/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/39
RA	4161	.	1	1490001	0	A	G	consensus_score=304.7	frequency=1	major_base=G	major_cov=60/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/43
RA	4162	.	1	1490440	0	G	A	consensus_score=261.4	frequency=1	major_base=A	major_cov=48/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/53
RA	4163	.	1	1492024	0	G	T	consensus_score=233.2	frequency=1	major_base=T	major_cov=46/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/35
RA	4164	.	1	1496034	0	G	A	consensus_score=298.3	frequency=1	major_base=A	major_cov=47/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/56
RA	4165	.	1	1496101	0	C	T	consensus_score=230.6	frequency=1	major_base=T	major_cov=34/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/45
RA	4166	.	1	1496970	0	C	T	consensus_score=270.2	frequency=1	major_base=T	major_cov=53/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/38
RA	4167	.	1	1497438	0	T	C	consensus_score=306.2	frequency=1	major_base=C	major_cov=51/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/55
RA	4168	.	1	1497479	0	G	A	consensus_score=277.7	frequency=1	major_base=A	major_cov=41/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/55
RA	4169	.	1	1499966	1	.	T	bias_e_value=2102720	bias_p_value=0.999999	consensus_score=240.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998853	major_base=T	major_cov=42/41	major_frequency=9.881e-01	minor_base=.	minor_cov=1/0	new_cov=42/41	polymorphism_frequency=9.881e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=1/0	total_cov=43/41
RA	4170	.	1	1500745	0	C	T	consensus_score=363.9	frequency=1	major_base=T	major_cov=63/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/62
RA	4171	.	1	1501806	0	C	T	consensus_score=340.5	frequency=1	major_base=T	major_cov=46/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/66
RA	4172	.	1	1501821	0	A	G	consensus_score=320.7	frequency=1	major_base=G	major_cov=42/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/66
RA	4173	.	1	1502196	0	T	C	consensus_score=298.7	frequency=1	major_base=C	major_cov=53/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/49
RA	4174	.	1	1503760	0	T	C	consensus_score=323.9	frequency=1	major_base=C	major_cov=51/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/57
RA	4175	.	1	1503982	0	C	T	bias_e_value=0.0145686	bias_p_value=6.92845e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=163.3	fisher_strand_p_value=3.02293e-10	frequency=2.500e-01	ks_quality_p_value=1	major_base=C	major_cov=22/50	major_frequency=7.500e-01	minor_base=T	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.500e-01	polymorphism_score=15.1	prediction=polymorphism	ref_cov=22/50	total_cov=46/50
RA	4176	.	1	1506196	0	A	G	consensus_score=347.0	frequency=1	major_base=G	major_cov=47/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/66
RA	4177	.	1	1509777	0	T	C	consensus_score=18.1	frequency=1	major_base=C	major_cov=4/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/4
RA	4178	.	1	1510027	0	G	A	consensus_score=194.6	frequency=1	major_base=A	major_cov=31/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/41
RA	4179	.	1	1515772	0	T	C	consensus_score=110.5	frequency=1	major_base=C	major_cov=22/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/16
RA	4180	.	1	1516427	0	G	A	consensus_score=150.3	frequency=1	major_base=A	major_cov=31/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/22
RA	4181	.	1	1517345	0	A	G	consensus_score=227.0	frequency=1	major_base=G	major_cov=43/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/32
RA	4182	.	1	1517595	0	C	T	consensus_score=210.4	frequency=1	major_base=T	major_cov=36/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/37
RA	4183	.	1	1519819	0	T	C	consensus_score=242.6	frequency=1	major_base=C	major_cov=45/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/41
RA	4184	.	1	1519998	0	G	A	consensus_score=233.3	frequency=1	major_base=A	major_cov=38/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/43
RA	4185	.	1	1521160	0	G	A	consensus_score=237.7	frequency=1	major_base=A	major_cov=50/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/28
RA	4186	.	1	1522995	0	A	C	consensus_score=366.4	frequency=1	major_base=C	major_cov=56/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/63
RA	4187	.	1	1523083	0	A	G	consensus_score=319.6	frequency=1	major_base=G	major_cov=55/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/50
RA	4188	.	1	1523226	0	T	C	consensus_score=282.6	frequency=1	major_base=C	major_cov=46/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/53
RA	4189	.	1	1524022	0	A	C	consensus_score=218.4	frequency=1	major_base=C	major_cov=39/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/38
RA	4190	.	1	1526067	0	G	A	consensus_score=226.8	frequency=1	major_base=A	major_cov=33/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/44
RA	4191	.	1	1530103	0	A	G	consensus_score=223.0	frequency=1	major_base=G	major_cov=43/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/34
RA	4192	.	1	1532154	0	G	A	bias_e_value=1581500	bias_p_value=0.75212	consensus_score=127.3	fisher_strand_p_value=0.384615	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=32/19	major_frequency=9.808e-01	minor_base=G	minor_cov=0/1	new_cov=32/19	polymorphism_frequency=9.808e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=32/20
RA	4193	.	1	1532474	0	G	A	consensus_score=236.1	frequency=1	major_base=A	major_cov=38/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/44
RA	4194	.	1	1534103	0	G	A	consensus_score=202.4	frequency=1	major_base=A	major_cov=42/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/29
RA	4195	.	1	1534502	0	G	A	bias_e_value=0.00285396	bias_p_value=1.35727e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=134.8	fisher_strand_p_value=5.51255e-11	frequency=2.558e-01	ks_quality_p_value=1	major_base=G	major_cov=49/15	major_frequency=7.442e-01	minor_base=A	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.558e-01	polymorphism_score=11.2	prediction=polymorphism	ref_cov=49/15	total_cov=49/37
RA	4196	.	1	1534548	0	C	T	bias_e_value=0.515073	bias_p_value=2.44955e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=127.2	fisher_strand_p_value=1.27742e-08	frequency=2.250e-01	ks_quality_p_value=1	major_base=C	major_cov=45/17	major_frequency=7.750e-01	minor_base=T	minor_cov=0/18	new_cov=0/18	polymorphism_frequency=2.250e-01	polymorphism_score=13.3	prediction=polymorphism	ref_cov=45/17	total_cov=46/36
RA	4197	.	1	1534595	0	G	A	consensus_score=243.4	frequency=1	major_base=A	major_cov=46/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/39
RA	4198	.	1	1535249	0	C	T	consensus_score=139.8	frequency=1	major_base=T	major_cov=22/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/26
RA	4199	.	1	1535350	0	A	G	consensus_score=168.3	frequency=1	major_base=G	major_cov=25/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/33
RA	4200	.	1	1539616	0	C	T	consensus_score=188.9	frequency=1	major_base=T	major_cov=36/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/30
RA	4201	.	1	1540155	0	C	T	bias_e_value=1815680	bias_p_value=0.863491	consensus_score=230.9	fisher_strand_p_value=0.525316	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=48/30	major_frequency=9.750e-01	minor_base=C	minor_cov=2/0	new_cov=48/30	polymorphism_frequency=9.750e-01	polymorphism_score=NA	prediction=consensus	ref_cov=2/0	total_cov=50/30
RA	4202	.	1	1541716	0	C	T	consensus_score=216.9	frequency=1	major_base=T	major_cov=36/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/41
RA	4203	.	1	1542960	0	T	C	consensus_score=206.0	frequency=1	major_base=C	major_cov=29/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/40
RA	4204	.	1	1544051	0	A	G	consensus_score=304.8	frequency=1	major_base=G	major_cov=54/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/47
RA	4205	.	1	1546157	0	A	T	bias_e_value=0.000187527	bias_p_value=8.9183e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=153.3	fisher_strand_p_value=3.24859e-12	frequency=2.500e-01	ks_quality_p_value=1	major_base=A	major_cov=6/48	major_frequency=7.500e-01	minor_base=T	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.500e-01	polymorphism_score=13.6	prediction=polymorphism	ref_cov=6/48	total_cov=24/48
RA	4206	.	1	1546181	0	T	G	bias_e_value=0.00100891	bias_p_value=4.79812e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=151.9	fisher_strand_p_value=1.88534e-11	frequency=2.639e-01	ks_quality_p_value=0.990091	major_base=T	major_cov=8/45	major_frequency=7.361e-01	minor_base=G	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.639e-01	polymorphism_score=11.3	prediction=polymorphism	ref_cov=8/45	total_cov=29/45
RA	4207	.	1	1550513	0	G	T	consensus_score=230.5	frequency=1	major_base=T	major_cov=50/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/30
RA	4208	.	1	1550873	0	C	T	consensus_score=298.4	frequency=1	major_base=T	major_cov=43/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/59
RA	4209	.	1	1551659	0	C	T	consensus_score=190.4	frequency=1	major_base=T	major_cov=38/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/26
RA	4210	.	1	1555330	0	C	T	bias_e_value=10.9989	bias_p_value=5.23079e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=107.4	fisher_strand_p_value=3.31704e-07	frequency=2.821e-01	ks_quality_p_value=0.989977	major_base=C	major_cov=33/23	major_frequency=7.179e-01	minor_base=T	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.821e-01	polymorphism_score=18.0	prediction=polymorphism	ref_cov=33/23	total_cov=33/46
RA	4211	.	1	1555360	0	A	C	bias_e_value=2.5123e-05	bias_p_value=1.19479e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=62.5	fisher_strand_p_value=4.04518e-13	frequency=4.848e-01	ks_quality_p_value=1	major_base=A	major_cov=28/6	major_frequency=5.152e-01	minor_base=C	minor_cov=0/32	new_cov=0/32	polymorphism_frequency=4.848e-01	polymorphism_score=25.5	prediction=polymorphism	ref_cov=28/6	total_cov=28/38
RA	4212	.	1	1556275	0	A	G	consensus_score=273.7	frequency=1	major_base=G	major_cov=54/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/44
RA	4213	.	1	1558004	0	A	G	consensus_score=195.7	frequency=1	major_base=G	major_cov=32/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/33
RA	4214	.	1	1558636	0	T	G	consensus_score=293.6	frequency=1	major_base=G	major_cov=41/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/54
RA	4215	.	1	1559800	0	T	G	consensus_score=179.9	frequency=1	major_base=G	major_cov=37/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/26
RA	4216	.	1	1560006	0	T	A	bias_e_value=0.00806067	bias_p_value=3.83345e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=103.7	fisher_strand_p_value=1.62861e-10	frequency=2.909e-01	ks_quality_p_value=1	major_base=T	major_cov=4/35	major_frequency=7.091e-01	minor_base=A	minor_cov=16/0	new_cov=16/0	polymorphism_frequency=2.909e-01	polymorphism_score=11.1	prediction=polymorphism	ref_cov=4/35	total_cov=20/35
RA	4217	.	1	1563521	0	C	G	consensus_score=36.6	frequency=1	major_base=G	major_cov=9/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/5
RA	4218	.	1	1566510	0	G	A	consensus_score=221.8	frequency=1	major_base=A	major_cov=48/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/30
RA	4219	.	1	1571595	0	C	T	consensus_score=226.6	frequency=1	major_base=T	major_cov=38/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/39
RA	4220	.	1	1571634	0	G	A	consensus_score=210.6	frequency=1	major_base=A	major_cov=38/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/36
RA	4221	.	1	1573785	0	G	A	consensus_score=224.7	frequency=1	major_base=A	major_cov=43/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/36
RA	4222	.	1	1575231	0	G	A	consensus_score=234.6	frequency=1	major_base=A	major_cov=50/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/32
RA	4223	.	1	1576484	0	T	G	consensus_score=226.8	frequency=1	major_base=G	major_cov=41/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/35
RA	4224	.	1	1579677	0	T	C	consensus_score=15.1	frequency=1	major_base=C	major_cov=5/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/2
RA	4225	.	1	1580968	0	T	C	consensus_score=176.0	frequency=1	major_base=C	major_cov=29/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/28
RA	4226	.	1	1582399	0	G	A	consensus_score=220.7	frequency=1	major_base=A	major_cov=42/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/32
RA	4227	.	1	1583036	0	C	A	consensus_score=272.0	frequency=1	major_base=A	major_cov=39/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/54
RA	4228	.	1	1583824	0	G	A	bias_e_value=1232550	bias_p_value=0.586168	consensus_score=255.8	fisher_strand_p_value=0.242574	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=51/48	major_frequency=9.802e-01	minor_base=G	minor_cov=0/2	new_cov=51/48	polymorphism_frequency=9.802e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/2	total_cov=51/50
RA	4229	.	1	1594349	0	T	C	consensus_score=416.0	frequency=1	major_base=C	major_cov=55/80	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/80	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/80
RA	4230	.	1	1595589	0	A	C	consensus_score=173.4	frequency=1	major_base=C	major_cov=31/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/29
RA	4231	.	1	1596273	0	A	G	consensus_score=297.2	frequency=1	major_base=G	major_cov=49/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/52
RA	4232	.	1	1597765	0	G	A	consensus_score=277.8	frequency=1	major_base=A	major_cov=52/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/41
RA	4233	.	1	1598522	0	T	C	consensus_score=283.5	frequency=1	major_base=C	major_cov=48/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/45
RA	4234	.	1	1598997	0	G	A	consensus_score=220.2	frequency=1	major_base=A	major_cov=47/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/38
RA	4235	.	1	1599872	0	T	C	consensus_score=228.1	frequency=1	major_base=C	major_cov=41/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/33
RA	4236	.	1	1603409	0	G	A	consensus_score=232.8	frequency=1	major_base=A	major_cov=35/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/45
RA	4237	.	1	1605718	0	T	G	consensus_score=200.9	frequency=1	major_base=G	major_cov=34/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/36
RA	4238	.	1	1605957	0	A	G	consensus_score=233.1	frequency=1	major_base=G	major_cov=38/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/39
RA	4239	.	1	1607006	0	G	A	consensus_score=286.4	frequency=1	major_base=A	major_cov=57/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/43
RA	4240	.	1	1607178	0	T	.	consensus_score=339.1	frequency=1	major_base=.	major_cov=35/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/44
RA	4241	.	1	1607179	0	T	.	consensus_score=339.1	frequency=1	major_base=.	major_cov=35/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/44
RA	4242	.	1	1608890	0	C	T	consensus_score=214.5	frequency=1	major_base=T	major_cov=41/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/31
RA	4243	.	1	1614135	0	T	G	consensus_score=169.1	frequency=1	major_base=G	major_cov=23/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/34
RA	4244	.	1	1614186	0	T	A	consensus_score=131.2	frequency=1	major_base=A	major_cov=16/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/31
RA	4245	.	1	1614806	0	C	T	consensus_score=214.9	frequency=1	major_base=T	major_cov=45/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/29
RA	4246	.	1	1615106	0	C	T	consensus_score=201.3	frequency=1	major_base=T	major_cov=34/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/37
RA	4247	.	1	1616503	0	C	T	consensus_score=197.5	frequency=1	major_base=T	major_cov=37/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/32
RA	4248	.	1	1617118	0	G	A	bias_e_value=2102720	bias_p_value=1	consensus_score=268.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999771	major_base=A	major_cov=50/43	major_frequency=9.894e-01	minor_base=C	minor_cov=1/0	new_cov=50/43	polymorphism_frequency=9.894e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/43
RA	4249	.	1	1617556	0	A	G	consensus_score=231.4	frequency=1	major_base=G	major_cov=43/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/38
RA	4250	.	1	1617919	0	G	A	bias_e_value=2102720	bias_p_value=1	consensus_score=204.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=35/38	major_frequency=9.865e-01	minor_base=T	minor_cov=0/1	new_cov=35/38	polymorphism_frequency=9.865e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/39
RA	4251	.	1	1624389	0	C	T	bias_e_value=2102720	bias_p_value=1	consensus_score=217.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999684	major_base=T	major_cov=42/37	major_frequency=9.875e-01	minor_base=A	minor_cov=1/0	new_cov=42/37	polymorphism_frequency=9.875e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/37
RA	4252	.	1	1625100	0	T	C	consensus_score=217.5	frequency=1	major_base=C	major_cov=34/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/41
RA	4253	.	1	1625571	0	T	C	consensus_score=244.3	frequency=1	major_base=C	major_cov=47/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/36
RA	4254	.	1	1626459	0	A	G	consensus_score=241.0	frequency=1	major_base=G	major_cov=42/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/41
RA	4255	.	1	1626485	0	A	C	bias_e_value=2102720	bias_p_value=0.999999	consensus_score=243.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998766	major_base=C	major_cov=44/36	major_frequency=9.877e-01	minor_base=.	minor_cov=1/0	new_cov=44/36	polymorphism_frequency=9.877e-01	polymorphism_score=-2.8	prediction=consensus	ref_cov=0/0	total_cov=45/36
RA	4256	.	1	1627266	0	C	A	consensus_score=224.3	frequency=1	major_base=A	major_cov=37/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/40
RA	4257	.	1	1628535	0	A	C	consensus_score=179.4	frequency=1	major_base=C	major_cov=29/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/32
RA	4258	.	1	1628692	0	G	A	consensus_score=186.1	frequency=1	major_base=A	major_cov=32/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/33
RA	4259	.	1	1629304	0	A	G	consensus_score=304.2	frequency=1	major_base=G	major_cov=55/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/47
RA	4260	.	1	1629369	0	C	T	consensus_score=271.2	frequency=1	major_base=T	major_cov=49/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/46
RA	4261	.	1	1632533	0	G	A	consensus_score=346.1	frequency=1	major_base=A	major_cov=58/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/56
RA	4262	.	1	1633930	0	A	.	consensus_score=369.7	frequency=1	major_base=.	major_cov=47/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/39
RA	4263	.	1	1636711	0	G	T	consensus_score=59.6	frequency=1	major_base=T	major_cov=11/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/12
RA	4264	.	1	1638245	0	A	G	consensus_score=217.7	frequency=1	major_base=G	major_cov=37/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/38
RA	4265	.	1	1638349	0	T	G	consensus_score=209.6	frequency=1	major_base=G	major_cov=32/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/43
RA	4266	.	1	1640139	0	G	A	consensus_score=253.0	frequency=1	major_base=A	major_cov=53/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/36
RA	4267	.	1	1640205	0	T	C	consensus_score=307.3	frequency=1	major_base=C	major_cov=61/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/44
RA	4268	.	1	1640697	0	T	C	consensus_score=265.3	frequency=1	major_base=C	major_cov=44/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/46
RA	4269	.	1	1640722	0	G	A	consensus_score=279.7	frequency=1	major_base=A	major_cov=50/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/48
RA	4270	.	1	1642132	0	G	A	consensus_score=102.8	frequency=1	major_base=A	major_cov=19/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/18
RA	4271	.	1	1642252	0	T	C	consensus_score=159.4	frequency=1	major_base=C	major_cov=35/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/19
RA	4272	.	1	1642773	0	G	A	consensus_score=229.9	frequency=1	major_base=A	major_cov=38/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/41
RA	4273	.	1	1643604	0	G	A	consensus_score=206.7	frequency=1	major_base=A	major_cov=33/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/41
RA	4274	.	1	1645622	0	T	C	consensus_score=178.6	frequency=1	major_base=C	major_cov=37/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/25
RA	4275	.	1	1646025	0	T	C	consensus_score=163.7	frequency=1	major_base=C	major_cov=26/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/31
RA	4276	.	1	1647515	0	A	G	consensus_score=197.6	frequency=1	major_base=G	major_cov=30/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/39
RA	4277	.	1	1648223	0	T	C	consensus_score=202.6	frequency=1	major_base=C	major_cov=39/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/31
RA	4278	.	1	1648393	0	C	T	consensus_score=158.1	frequency=1	major_base=T	major_cov=30/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/25
RA	4279	.	1	1648458	0	G	A	consensus_score=195.3	frequency=1	major_base=A	major_cov=35/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/35
RA	4280	.	1	1650397	0	T	.	consensus_score=106.0	frequency=1	major_base=.	major_cov=9/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/17
RA	4281	.	1	1650585	0	G	C	consensus_score=129.0	frequency=1	major_base=C	major_cov=23/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/20
RA	4282	.	1	1651737	0	C	T	consensus_score=45.9	frequency=1	major_base=T	major_cov=9/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/9
RA	4283	.	1	1652688	0	G	A	consensus_score=28.7	frequency=1	major_base=A	major_cov=5/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/7
RA	4284	.	1	1653825	0	T	C	consensus_score=259.7	frequency=1	major_base=C	major_cov=43/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/48
RA	4285	.	1	1661600	0	G	A	consensus_score=173.8	frequency=1	major_base=A	major_cov=38/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/23
RA	4286	.	1	1663529	0	G	A	bias_e_value=2.27914e-05	bias_p_value=1.0839e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=179.7	fisher_strand_p_value=3.65727e-13	frequency=2.336e-01	ks_quality_p_value=1	major_base=G	major_cov=64/18	major_frequency=7.664e-01	minor_base=A	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.336e-01	polymorphism_score=11.2	prediction=polymorphism	ref_cov=64/18	total_cov=64/43
RA	4287	.	1	1663538	0	C	T	bias_e_value=4.30166e-05	bias_p_value=2.04576e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=194.9	fisher_strand_p_value=7.05939e-13	frequency=2.243e-01	ks_quality_p_value=1	major_base=C	major_cov=65/18	major_frequency=7.757e-01	minor_base=T	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=2.243e-01	polymorphism_score=12.6	prediction=polymorphism	ref_cov=65/18	total_cov=65/42
RA	4288	.	1	1668054	0	A	G	consensus_score=269.0	frequency=1	major_base=G	major_cov=41/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/51
RA	4289	.	1	1668598	0	A	C	bias_e_value=14.2729	bias_p_value=6.78784e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=79.0	fisher_strand_p_value=4.33703e-07	frequency=3.269e-01	ks_quality_p_value=1	major_base=A	major_cov=25/10	major_frequency=6.731e-01	minor_base=C	minor_cov=0/17	new_cov=0/17	polymorphism_frequency=3.269e-01	polymorphism_score=14.8	prediction=polymorphism	ref_cov=25/10	total_cov=25/27
RA	4290	.	1	1670058	0	C	T	bias_e_value=7.91883e-06	bias_p_value=3.76599e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=89.5	fisher_strand_p_value=1.2255e-13	frequency=3.382e-01	ks_quality_p_value=1	major_base=C	major_cov=5/40	major_frequency=6.618e-01	minor_base=T	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=3.382e-01	polymorphism_score=15.3	prediction=polymorphism	ref_cov=5/40	total_cov=28/40
RA	4291	.	1	1670063	0	C	T	bias_e_value=7.91861e-06	bias_p_value=3.76589e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=89.2	fisher_strand_p_value=1.2255e-13	frequency=3.382e-01	ks_quality_p_value=0.999972	major_base=C	major_cov=5/40	major_frequency=6.618e-01	minor_base=T	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=3.382e-01	polymorphism_score=15.4	prediction=polymorphism	ref_cov=5/40	total_cov=28/40
RA	4292	.	1	1670096	0	T	A	bias_e_value=0.0151772	bias_p_value=7.21791e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=130.7	fisher_strand_p_value=3.15512e-10	frequency=2.714e-01	ks_quality_p_value=1	major_base=T	major_cov=10/41	major_frequency=7.286e-01	minor_base=A	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.714e-01	polymorphism_score=10.9	prediction=polymorphism	ref_cov=10/41	total_cov=29/41
RA	4293	.	1	1670779	0	A	G	consensus_score=222.3	frequency=1	major_base=G	major_cov=43/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/31
RA	4294	.	1	1671075	0	A	G	consensus_score=201.3	frequency=1	major_base=G	major_cov=38/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/33
RA	4295	.	1	1671647	0	G	T	bias_e_value=2056540	bias_p_value=0.978037	consensus_score=178.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.797873	major_base=T	major_cov=39/23	major_frequency=9.841e-01	minor_base=G	minor_cov=1/0	new_cov=39/23	polymorphism_frequency=9.841e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=1/0	total_cov=40/23
RA	4296	.	1	1673286	0	T	C	consensus_score=199.2	frequency=1	major_base=C	major_cov=37/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/33
RA	4297	.	1	1674354	0	A	C	consensus_score=243.7	frequency=1	major_base=C	major_cov=46/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/35
RA	4298	.	1	1675446	0	A	G	bias_e_value=1665630	bias_p_value=0.792129	consensus_score=127.6	fisher_strand_p_value=0.436364	frequency=1	ks_quality_p_value=0.983306	major_base=G	major_cov=31/23	major_frequency=9.818e-01	minor_base=A	minor_cov=0/1	new_cov=31/23	polymorphism_frequency=9.818e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=31/24
RA	4299	.	1	1682659	0	A	G	consensus_score=21.9	frequency=1	major_base=G	major_cov=4/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/5
RA	4300	.	1	1686523	0	A	G	consensus_score=93.9	frequency=1	major_base=G	major_cov=15/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/17
RA	4301	.	1	1689061	0	C	T	consensus_score=214.6	frequency=1	major_base=T	major_cov=32/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/40
RA	4302	.	1	1689698	0	G	C	consensus_score=131.4	frequency=1	major_base=C	major_cov=25/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/22
RA	4303	.	1	1689911	0	A	G	consensus_score=143.0	frequency=1	major_base=G	major_cov=27/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/21
RA	4304	.	1	1691179	0	T	A	consensus_score=141.8	frequency=1	major_base=A	major_cov=23/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/27
RA	4305	.	1	1691935	0	C	T	consensus_score=176.9	frequency=1	major_base=T	major_cov=30/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/32
RA	4306	.	1	1694422	0	A	G	consensus_score=141.6	frequency=1	major_base=G	major_cov=24/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/25
RA	4307	.	1	1696984	0	A	C	consensus_score=177.6	frequency=1	major_base=C	major_cov=38/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/24
RA	4308	.	1	1699737	0	A	G	consensus_score=246.2	frequency=1	major_base=G	major_cov=43/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/42
RA	4309	.	1	1702094	0	G	A	consensus_score=208.8	frequency=1	major_base=A	major_cov=33/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/39
RA	4310	.	1	1702394	0	G	A	consensus_score=186.8	frequency=1	major_base=A	major_cov=39/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/26
RA	4311	.	1	1702402	0	C	A	consensus_score=202.1	frequency=1	major_base=A	major_cov=39/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/28
RA	4312	.	1	1702588	0	C	T	consensus_score=242.6	frequency=1	major_base=T	major_cov=49/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/36
RA	4313	.	1	1704259	0	A	G	consensus_score=243.4	frequency=1	major_base=G	major_cov=42/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/39
RA	4314	.	1	1704316	0	A	G	consensus_score=254.3	frequency=1	major_base=G	major_cov=45/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/44
RA	4315	.	1	1704417	0	T	C	consensus_score=181.4	frequency=1	major_base=C	major_cov=30/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/34
RA	4316	.	1	1705261	0	T	C	consensus_score=55.1	frequency=1	major_base=C	major_cov=6/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/15
RA	4317	.	1	1705967	0	T	C	consensus_score=243.5	frequency=1	major_base=C	major_cov=43/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/42
RA	4318	.	1	1707167	0	A	G	consensus_score=237.1	frequency=1	major_base=G	major_cov=34/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/46
RA	4319	.	1	1714600	0	A	G	consensus_score=336.4	frequency=1	major_base=G	major_cov=59/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/51
RA	4320	.	1	1714603	0	G	A	consensus_score=318.8	frequency=1	major_base=A	major_cov=59/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/51
RA	4321	.	1	1714656	0	T	C	consensus_score=283.7	frequency=1	major_base=C	major_cov=62/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/35
RA	4322	.	1	1714695	0	A	G	bias_e_value=632207	bias_p_value=0.300661	consensus_score=264.1	fisher_strand_p_value=0.376344	frequency=1	ks_quality_p_value=0.232501	major_base=G	major_cov=58/34	major_frequency=9.892e-01	minor_base=A	minor_cov=0/1	new_cov=58/34	polymorphism_frequency=9.892e-01	polymorphism_score=-5.0	prediction=consensus	ref_cov=0/1	total_cov=58/35
RA	4323	.	1	1716635	0	A	C	consensus_score=388.4	frequency=1	major_base=C	major_cov=56/71	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/71	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/71
RA	4324	.	1	1716935	0	C	T	consensus_score=419.6	frequency=1	major_base=T	major_cov=62/75	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/75	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/75
RA	4325	.	1	1717353	0	T	G	bias_e_value=2102720	bias_p_value=1	consensus_score=372.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999879	major_base=G	major_cov=61/67	major_frequency=9.922e-01	minor_base=A	minor_cov=0/1	new_cov=61/67	polymorphism_frequency=9.922e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/68
RA	4326	.	1	1717369	0	G	A	consensus_score=390.1	frequency=1	major_base=A	major_cov=66/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/67
RA	4327	.	1	1719358	0	A	G	consensus_score=356.3	frequency=1	major_base=G	major_cov=50/69	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/69	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/69
RA	4328	.	1	1719506	0	G	A	consensus_score=281.1	frequency=1	major_base=A	major_cov=48/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/45
RA	4329	.	1	1720361	0	G	A	consensus_score=330.5	frequency=1	major_base=A	major_cov=60/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/51
RA	4330	.	1	1721094	0	C	T	consensus_score=363.2	frequency=1	major_base=T	major_cov=60/69	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/69	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/69
RA	4331	.	1	1721712	0	G	A	bias_e_value=2089430	bias_p_value=0.993678	consensus_score=407.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.889678	major_base=A	major_cov=63/73	major_frequency=9.927e-01	minor_base=G	minor_cov=0/1	new_cov=63/73	polymorphism_frequency=9.927e-01	polymorphism_score=-5.3	prediction=consensus	ref_cov=0/1	total_cov=63/74
RA	4332	.	1	1723014	0	T	C	consensus_score=251.0	frequency=1	major_base=C	major_cov=28/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/60
RA	4333	.	1	1724040	0	A	G	consensus_score=384.6	frequency=1	major_base=G	major_cov=70/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=70/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=70/56
RA	4334	.	1	1725259	0	A	G	consensus_score=343.1	frequency=1	major_base=G	major_cov=55/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/59
RA	4335	.	1	1725307	0	C	T	bias_e_value=2102720	bias_p_value=1	consensus_score=331.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=56/55	major_frequency=9.911e-01	minor_base=C	minor_cov=1/0	new_cov=56/55	polymorphism_frequency=9.911e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=57/55
RA	4336	.	1	1726605	0	C	G	bias_e_value=1987800	bias_p_value=0.945347	consensus_reject=FREQUENCY_CUTOFF	consensus_score=16.9	fisher_strand_p_value=0.688156	frequency=4.483e-01	ks_quality_p_value=1	major_base=C	major_cov=12/4	major_frequency=5.517e-01	minor_base=G	minor_cov=8/5	new_cov=8/5	polymorphism_frequency=4.483e-01	polymorphism_score=12.6	prediction=polymorphism	ref_cov=12/4	total_cov=21/9
RA	4337	.	1	1729026	0	T	C	consensus_score=374.6	frequency=1	major_base=C	major_cov=68/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=68/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/59
RA	4338	.	1	1729083	0	A	G	consensus_score=402.9	frequency=1	major_base=G	major_cov=68/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=68/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/66
RA	4339	.	1	1729137	0	C	T	consensus_score=375.5	frequency=1	major_base=T	major_cov=65/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/59
RA	4340	.	1	1729510	0	T	G	consensus_score=370.6	frequency=1	major_base=G	major_cov=58/70	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/70	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/70
RA	4341	.	1	1731304	0	T	C	consensus_score=292.0	frequency=1	major_base=C	major_cov=54/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/47
RA	4342	.	1	1731648	0	G	A	consensus_score=360.5	frequency=1	major_base=A	major_cov=58/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/66
RA	4343	.	1	1731859	0	A	G	consensus_score=378.6	frequency=1	major_base=G	major_cov=55/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/67
RA	4344	.	1	1733248	0	C	T	consensus_score=308.3	frequency=1	major_base=T	major_cov=42/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/64
RA	4345	.	1	1733481	0	T	C	consensus_score=264.0	frequency=1	major_base=C	major_cov=44/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/47
RA	4346	.	1	1734875	0	G	A	consensus_score=341.6	frequency=1	major_base=A	major_cov=57/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/60
RA	4347	.	1	1736074	0	T	C	consensus_score=284.2	frequency=1	major_base=C	major_cov=53/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/46
RA	4348	.	1	1739465	0	A	G	consensus_score=194.1	frequency=1	major_base=G	major_cov=35/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/33
RA	4349	.	1	1741795	0	T	C	consensus_score=236.1	frequency=1	major_base=C	major_cov=47/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/30
RA	4350	.	1	1741833	0	C	T	consensus_score=227.5	frequency=1	major_base=T	major_cov=47/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/29
RA	4351	.	1	1742888	0	G	A	consensus_score=82.8	frequency=1	major_base=A	major_cov=16/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/14
RA	4352	.	1	1743886	0	C	T	consensus_score=232.8	frequency=1	major_base=T	major_cov=38/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/43
RA	4353	.	1	1746922	0	A	G	consensus_score=228.5	frequency=1	major_base=G	major_cov=41/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/35
RA	4354	.	1	1747830	0	G	A	consensus_score=299.4	frequency=1	major_base=A	major_cov=49/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/54
RA	4355	.	1	1750895	0	G	A	bias_e_value=1729130	bias_p_value=0.822332	consensus_score=263.0	fisher_strand_p_value=0.466667	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=41/48	major_frequency=9.889e-01	minor_base=C	minor_cov=1/0	new_cov=41/48	polymorphism_frequency=9.889e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/48
RA	4356	.	1	1751191	0	C	T	consensus_score=148.9	frequency=1	major_base=T	major_cov=20/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/32
RA	4357	.	1	1751357	0	C	T	consensus_score=261.1	frequency=1	major_base=T	major_cov=41/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/46
RA	4358	.	1	1751489	0	A	G	consensus_score=288.1	frequency=1	major_base=G	major_cov=45/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/50
RA	4359	.	1	1752342	0	A	G	consensus_score=226.8	frequency=1	major_base=G	major_cov=32/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/46
RA	4360	.	1	1752738	0	G	A	consensus_score=209.5	frequency=1	major_base=A	major_cov=36/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/38
RA	4361	.	1	1753018	0	T	C	consensus_score=279.6	frequency=1	major_base=C	major_cov=48/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/45
RA	4362	.	1	1753498	0	A	G	consensus_score=300.7	frequency=1	major_base=G	major_cov=47/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/54
RA	4363	.	1	1756218	0	C	T	consensus_score=292.5	frequency=1	major_base=T	major_cov=60/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/41
RA	4364	.	1	1756221	0	A	G	consensus_score=308.1	frequency=1	major_base=G	major_cov=60/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/41
RA	4365	.	1	1756982	0	A	G	consensus_score=241.5	frequency=1	major_base=G	major_cov=41/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/40
RA	4366	.	1	1757453	0	C	T	bias_e_value=1027.81	bias_p_value=0.000488802	consensus_reject=FREQUENCY_CUTOFF	consensus_score=44.5	fisher_strand_p_value=4.43414e-05	frequency=3.929e-01	ks_quality_p_value=1	major_base=C	major_cov=17/17	major_frequency=6.071e-01	minor_base=T	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=3.929e-01	polymorphism_score=16.6	prediction=polymorphism	ref_cov=17/17	total_cov=40/17
RA	4367	.	1	1758465	0	A	G	consensus_score=311.6	frequency=1	major_base=G	major_cov=55/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/49
RA	4368	.	1	1758768	0	C	T	consensus_score=332.9	frequency=1	major_base=T	major_cov=46/68	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/68	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/68
RA	4369	.	1	1759376	0	A	G	consensus_score=307.6	frequency=1	major_base=G	major_cov=49/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/56
RA	4370	.	1	1760208	0	C	T	consensus_score=261.6	frequency=1	major_base=T	major_cov=53/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/39
RA	4371	.	1	1760922	0	T	G	consensus_score=318.8	frequency=1	major_base=G	major_cov=47/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/60
RA	4372	.	1	1761428	0	A	T	consensus_score=234.9	frequency=1	major_base=T	major_cov=44/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/37
RA	4373	.	1	1761540	0	G	A	bias_e_value=939497	bias_p_value=0.446801	consensus_score=179.7	fisher_strand_p_value=0.156522	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=42/26	major_frequency=9.714e-01	minor_base=G	minor_cov=0/2	new_cov=42/26	polymorphism_frequency=9.714e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/2	total_cov=42/29
RA	4374	.	1	1761626	0	G	C	bias_e_value=7.59995	bias_p_value=3.61434e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=123.4	fisher_strand_p_value=2.21424e-07	frequency=2.167e-01	ks_quality_p_value=1	major_base=G	major_cov=37/10	major_frequency=7.833e-01	minor_base=C	minor_cov=0/13	new_cov=0/13	polymorphism_frequency=2.167e-01	polymorphism_score=12.4	prediction=polymorphism	ref_cov=37/10	total_cov=37/23
RA	4375	.	1	1763110	0	G	A	consensus_score=243.4	frequency=1	major_base=A	major_cov=34/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/46
RA	4376	.	1	1765857	0	C	A	consensus_score=194.2	frequency=1	major_base=A	major_cov=36/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/32
RA	4377	.	1	1768428	0	A	T	bias_e_value=2.38063	bias_p_value=1.13216e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=122.9	fisher_strand_p_value=6.44857e-08	frequency=2.241e-01	ks_quality_p_value=1	major_base=A	major_cov=8/37	major_frequency=7.759e-01	minor_base=T	minor_cov=13/0	new_cov=13/0	polymorphism_frequency=2.241e-01	polymorphism_score=10.3	prediction=polymorphism	ref_cov=8/37	total_cov=24/37
RA	4378	.	1	1768446	0	A	T	bias_e_value=0.0849024	bias_p_value=4.03774e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=133.6	fisher_strand_p_value=1.91607e-09	frequency=2.727e-01	ks_quality_p_value=1	major_base=A	major_cov=10/38	major_frequency=7.273e-01	minor_base=T	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.727e-01	polymorphism_score=13.8	prediction=polymorphism	ref_cov=10/38	total_cov=28/38
RA	4379	.	1	1768861	0	T	G	consensus_score=246.2	frequency=1	major_base=G	major_cov=42/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/43
RA	4380	.	1	1768902	0	T	C	consensus_score=249.3	frequency=1	major_base=C	major_cov=42/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/46
RA	4381	.	1	1769866	0	A	G	consensus_score=203.6	frequency=1	major_base=G	major_cov=36/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/33
RA	4382	.	1	1770378	0	A	G	consensus_score=249.6	frequency=1	major_base=G	major_cov=39/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/48
RA	4383	.	1	1772364	0	C	G	consensus_score=256.6	frequency=1	major_base=G	major_cov=33/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/58
RA	4384	.	1	1772424	0	T	.	consensus_score=350.4	frequency=1	major_base=.	major_cov=32/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/50
RA	4385	.	1	1773836	0	A	G	consensus_score=346.1	frequency=1	major_base=G	major_cov=57/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/61
RA	4386	.	1	1776528	1	.	T	consensus_score=257.2	frequency=1	major_base=T	major_cov=50/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/40
RA	4387	.	1	1777456	0	T	C	bias_e_value=2102580	bias_p_value=0.999933	consensus_score=191.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.988413	major_base=C	major_cov=42/23	major_frequency=9.848e-01	minor_base=.	minor_cov=1/0	new_cov=42/23	polymorphism_frequency=9.848e-01	polymorphism_score=-2.7	prediction=consensus	ref_cov=0/0	total_cov=43/23
RA	4388	.	1	1777826	0	G	A	consensus_score=217.3	frequency=1	major_base=A	major_cov=42/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/31
RA	4389	.	1	1778274	0	C	A	consensus_score=287.3	frequency=1	major_base=A	major_cov=37/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/59
RA	4390	.	1	1779799	0	G	A	consensus_score=241.5	frequency=1	major_base=A	major_cov=32/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/50
RA	4391	.	1	1780984	0	G	A	bias_e_value=2.23451	bias_p_value=1.06268e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=93.4	fisher_strand_p_value=6.09838e-08	frequency=3.171e-01	ks_quality_p_value=0.98874	major_base=G	major_cov=33/23	major_frequency=6.829e-01	minor_base=A	minor_cov=0/26	new_cov=0/26	polymorphism_frequency=3.171e-01	polymorphism_score=15.7	prediction=polymorphism	ref_cov=33/23	total_cov=33/49
RA	4392	.	1	1781671	0	A	.	consensus_score=319.1	frequency=1	major_base=.	major_cov=33/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/42
RA	4393	.	1	1785139	0	T	A	bias_e_value=4.5032e-09	bias_p_value=2.1416e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=112.7	fisher_strand_p_value=5.57333e-17	frequency=4.103e-01	ks_quality_p_value=1	major_base=T	major_cov=5/41	major_frequency=5.897e-01	minor_base=A	minor_cov=32/0	new_cov=32/0	polymorphism_frequency=4.103e-01	polymorphism_score=36.9	prediction=polymorphism	ref_cov=5/41	total_cov=37/41
RA	4394	.	1	1785168	0	T	A	bias_e_value=0.0531803	bias_p_value=2.52912e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=163.5	fisher_strand_p_value=1.17285e-09	frequency=2.530e-01	ks_quality_p_value=1	major_base=T	major_cov=17/45	major_frequency=7.470e-01	minor_base=A	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.530e-01	polymorphism_score=13.5	prediction=polymorphism	ref_cov=17/45	total_cov=39/45
RA	4395	.	1	1785210	0	T	A	bias_e_value=1.55357e-06	bias_p_value=7.38838e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=157.7	fisher_strand_p_value=2.2795e-14	frequency=3.333e-01	ks_quality_p_value=1	major_base=T	major_cov=11/47	major_frequency=6.667e-01	minor_base=A	minor_cov=29/0	new_cov=29/0	polymorphism_frequency=3.333e-01	polymorphism_score=23.8	prediction=polymorphism	ref_cov=11/47	total_cov=40/47
RA	4396	.	1	1785331	0	C	T	consensus_score=134.0	frequency=1	major_base=T	major_cov=16/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/32
RA	4397	.	1	1785899	0	T	G	bias_e_value=1.689e-07	bias_p_value=8.03246e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=194.8	fisher_strand_p_value=2.31487e-15	frequency=2.816e-01	ks_quality_p_value=1	major_base=T	major_cov=14/60	major_frequency=7.184e-01	minor_base=G	minor_cov=29/0	new_cov=29/0	polymorphism_frequency=2.816e-01	polymorphism_score=21.2	prediction=polymorphism	ref_cov=14/60	total_cov=43/60
RA	4398	.	1	1785929	0	G	T	bias_e_value=305014	bias_p_value=0.145057	consensus_score=264.9	fisher_strand_p_value=0.0328493	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=42/60	major_frequency=9.623e-01	minor_base=C	minor_cov=4/0	new_cov=42/60	polymorphism_frequency=9.623e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/62
RA	4399	.	1	1787243	0	A	G	consensus_score=229.3	frequency=1	major_base=G	major_cov=37/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/42
RA	4400	.	1	1787327	0	C	T	bias_e_value=1974790	bias_p_value=0.939161	consensus_score=243.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.672109	major_base=T	major_cov=48/39	major_frequency=9.886e-01	minor_base=C	minor_cov=1/0	new_cov=48/39	polymorphism_frequency=9.886e-01	polymorphism_score=-4.9	prediction=consensus	ref_cov=1/0	total_cov=49/39
RA	4401	.	1	1787516	0	T	C	consensus_score=232.1	frequency=1	major_base=C	major_cov=37/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/44
RA	4402	.	1	1789093	0	G	A	bias_e_value=2102690	bias_p_value=0.999988	consensus_score=219.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.995074	major_base=A	major_cov=35/45	major_frequency=9.877e-01	minor_base=C	minor_cov=0/1	new_cov=35/45	polymorphism_frequency=9.877e-01	polymorphism_score=-5.9	prediction=consensus	ref_cov=0/0	total_cov=35/46
RA	4403	.	1	1789469	0	A	G	consensus_score=224.0	frequency=1	major_base=G	major_cov=38/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/41
RA	4404	.	1	1790393	0	C	A	consensus_score=269.4	frequency=1	major_base=A	major_cov=55/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/34
RA	4405	.	1	1791239	0	G	A	consensus_score=240.3	frequency=1	major_base=A	major_cov=47/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/36
RA	4406	.	1	1791654	0	A	G	consensus_score=254.8	frequency=1	major_base=G	major_cov=34/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/53
RA	4407	.	1	1792848	0	C	T	consensus_score=240.0	frequency=1	major_base=T	major_cov=33/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/46
RA	4408	.	1	1793838	0	A	G	consensus_score=173.8	frequency=1	major_base=G	major_cov=32/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/30
RA	4409	.	1	1794981	0	C	T	consensus_score=220.6	frequency=1	major_base=T	major_cov=30/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/43
RA	4410	.	1	1796486	0	A	G	consensus_score=244.9	frequency=1	major_base=G	major_cov=49/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/36
RA	4411	.	1	1796935	0	T	C	consensus_score=178.0	frequency=1	major_base=C	major_cov=30/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/29
RA	4412	.	1	1797585	0	G	A	bias_e_value=2102720	bias_p_value=1	consensus_score=218.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=47/29	major_frequency=9.870e-01	minor_base=C	minor_cov=1/0	new_cov=47/29	polymorphism_frequency=9.870e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/29
RA	4413	.	1	1798796	0	G	A	consensus_score=196.8	frequency=1	major_base=A	major_cov=36/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/30
RA	4414	.	1	1799208	0	T	G	consensus_score=213.8	frequency=1	major_base=G	major_cov=38/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/35
RA	4415	.	1	1800992	0	G	A	consensus_score=231.2	frequency=1	major_base=A	major_cov=45/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/36
RA	4416	.	1	1801177	0	A	C	consensus_score=217.3	frequency=1	major_base=C	major_cov=31/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/41
RA	4417	.	1	1801634	0	T	G	consensus_score=229.4	frequency=1	major_base=G	major_cov=32/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/47
RA	4418	.	1	1803125	0	T	C	consensus_score=163.5	frequency=1	major_base=C	major_cov=33/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/24
RA	4419	.	1	1803153	0	C	T	consensus_score=177.3	frequency=1	major_base=T	major_cov=33/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/28
RA	4420	.	1	1803519	0	C	T	consensus_score=135.2	frequency=1	major_base=T	major_cov=25/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/23
RA	4421	.	1	1803523	0	A	C	bias_e_value=1205470	bias_p_value=0.573289	consensus_score=131.7	fisher_strand_p_value=0.234043	frequency=1	ks_quality_p_value=0.998111	major_base=C	major_cov=24/21	major_frequency=9.574e-01	minor_base=A	minor_cov=0/2	new_cov=24/21	polymorphism_frequency=9.574e-01	polymorphism_score=-5.7	prediction=consensus	ref_cov=0/2	total_cov=24/23
RA	4422	.	1	1804111	0	G	C	consensus_score=269.7	frequency=1	major_base=C	major_cov=48/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/46
RA	4423	.	1	1804730	1	.	T	bias_e_value=1722800	bias_p_value=0.819322	consensus_score=265.9	fisher_strand_p_value=0.483146	frequency=1	ks_quality_p_value=0.957762	major_base=T	major_cov=46/42	major_frequency=9.888e-01	minor_base=.	minor_cov=0/1	new_cov=46/42	polymorphism_frequency=9.888e-01	polymorphism_score=-3.5	prediction=consensus	ref_cov=0/1	total_cov=46/43
RA	4424	.	1	1804865	0	T	G	consensus_score=218.1	frequency=1	major_base=G	major_cov=37/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/37
RA	4425	.	1	1807016	0	C	T	consensus_score=220.7	frequency=1	major_base=T	major_cov=41/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/36
RA	4426	.	1	1807223	0	T	C	consensus_score=211.6	frequency=1	major_base=C	major_cov=32/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/43
RA	4427	.	1	1808260	0	T	C	consensus_score=226.1	frequency=1	major_base=C	major_cov=36/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/44
RA	4428	.	1	1809113	0	T	C	consensus_score=224.5	frequency=1	major_base=C	major_cov=47/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/28
RA	4429	.	1	1811169	0	G	A	consensus_score=207.1	frequency=1	major_base=A	major_cov=38/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/37
RA	4430	.	1	1812094	0	C	T	consensus_score=251.4	frequency=1	major_base=T	major_cov=40/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/47
RA	4431	.	1	1813638	0	G	A	consensus_score=223.2	frequency=1	major_base=A	major_cov=29/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/46
RA	4432	.	1	1814235	0	T	C	consensus_score=270.8	frequency=1	major_base=C	major_cov=51/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/41
RA	4433	.	1	1814579	0	T	G	consensus_score=290.1	frequency=1	major_base=G	major_cov=50/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/49
RA	4434	.	1	1814925	0	T	C	consensus_score=230.1	frequency=1	major_base=C	major_cov=44/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/32
RA	4435	.	1	1814946	0	T	C	consensus_score=204.5	frequency=1	major_base=C	major_cov=42/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/27
RA	4436	.	1	1814970	0	T	C	consensus_score=208.3	frequency=1	major_base=C	major_cov=39/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/32
RA	4437	.	1	1814980	0	A	C	consensus_score=204.0	frequency=1	major_base=C	major_cov=38/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/33
RA	4438	.	1	1815001	0	T	C	consensus_score=222.6	frequency=1	major_base=C	major_cov=41/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/33
RA	4439	.	1	1815024	0	A	G	consensus_score=237.3	frequency=1	major_base=G	major_cov=41/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/40
RA	4440	.	1	1815036	0	T	C	consensus_score=240.9	frequency=1	major_base=C	major_cov=42/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/40
RA	4441	.	1	1815063	0	T	C	consensus_score=227.2	frequency=1	major_base=C	major_cov=37/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/42
RA	4442	.	1	1815069	0	A	G	consensus_score=218.8	frequency=1	major_base=G	major_cov=36/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/41
RA	4443	.	1	1815070	0	G	C	consensus_score=218.5	frequency=1	major_base=C	major_cov=36/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/41
RA	4444	.	1	1815072	0	A	G	consensus_score=227.2	frequency=1	major_base=G	major_cov=36/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/41
RA	4445	.	1	1815108	0	T	C	consensus_score=232.2	frequency=1	major_base=C	major_cov=35/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/46
RA	4446	.	1	1815113	0	G	A	consensus_score=231.3	frequency=1	major_base=A	major_cov=36/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/43
RA	4447	.	1	1815144	0	C	T	consensus_score=205.3	frequency=1	major_base=T	major_cov=35/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/38
RA	4448	.	1	1815154	1	.	T	bias_e_value=1758850	bias_p_value=0.836465	consensus_score=197.2	fisher_strand_p_value=0.485714	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=33/36	major_frequency=9.857e-01	minor_base=A	minor_cov=1/0	new_cov=33/36	polymorphism_frequency=9.857e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=0/0	total_cov=34/36
RA	4449	.	1	1815154	2	.	C	consensus_score=211.3	frequency=1	major_base=C	major_cov=34/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/36
RA	4450	.	1	1815158	0	C	T	consensus_score=199.2	frequency=1	major_base=T	major_cov=34/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/36
RA	4451	.	1	1815167	0	A	.	consensus_score=304.0	frequency=1	major_base=.	major_cov=34/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/37
RA	4452	.	1	1815303	0	C	A	consensus_score=223.0	frequency=1	major_base=A	major_cov=44/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/34
RA	4453	.	1	1815363	0	C	T	bias_e_value=2102720	bias_p_value=1	consensus_score=241.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=49/34	major_frequency=9.881e-01	minor_base=C	minor_cov=1/0	new_cov=49/34	polymorphism_frequency=9.881e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=50/34
RA	4454	.	1	1815369	0	C	A	consensus_score=237.3	frequency=1	major_base=A	major_cov=50/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/34
RA	4455	.	1	1815384	0	G	A	consensus_score=263.1	frequency=1	major_base=A	major_cov=54/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/38
RA	4456	.	1	1815441	0	C	T	consensus_score=296.6	frequency=1	major_base=T	major_cov=53/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/49
RA	4457	.	1	1815453	0	A	G	consensus_score=292.5	frequency=1	major_base=G	major_cov=53/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/45
RA	4458	.	1	1815480	0	C	T	consensus_score=304.5	frequency=1	major_base=T	major_cov=57/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/46
RA	4459	.	1	1815483	0	C	T	consensus_score=291.8	frequency=1	major_base=T	major_cov=57/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/46
RA	4460	.	1	1815489	0	T	C	consensus_score=316.3	frequency=1	major_base=C	major_cov=61/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/48
RA	4461	.	1	1815528	0	A	G	consensus_score=288.5	frequency=1	major_base=G	major_cov=54/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/48
RA	4462	.	1	1815687	0	C	T	consensus_score=217.9	frequency=1	major_base=T	major_cov=37/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/39
RA	4463	.	1	1815717	0	A	G	consensus_score=212.2	frequency=1	major_base=G	major_cov=29/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/42
RA	4464	.	1	1815732	0	C	T	consensus_score=207.6	frequency=1	major_base=T	major_cov=33/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/41
RA	4465	.	1	1815738	0	C	T	consensus_score=203.0	frequency=1	major_base=T	major_cov=35/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/38
RA	4466	.	1	1815768	0	C	T	consensus_score=225.9	frequency=1	major_base=T	major_cov=37/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/41
RA	4467	.	1	1815810	0	C	T	consensus_score=274.5	frequency=1	major_base=T	major_cov=44/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/51
RA	4468	.	1	1815840	0	T	C	consensus_score=296.3	frequency=1	major_base=C	major_cov=47/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/53
RA	4469	.	1	1815945	0	T	C	consensus_score=319.4	frequency=1	major_base=C	major_cov=51/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/60
RA	4470	.	1	1815948	0	C	T	consensus_score=305.6	frequency=1	major_base=T	major_cov=51/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/60
RA	4471	.	1	1815984	0	A	G	consensus_score=305.4	frequency=1	major_base=G	major_cov=42/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/61
RA	4472	.	1	1816011	0	T	C	consensus_score=278.0	frequency=1	major_base=C	major_cov=39/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/58
RA	4473	.	1	1816091	0	C	T	bias_e_value=1424610	bias_p_value=0.677507	consensus_score=212.0	fisher_strand_p_value=0.402597	frequency=1	ks_quality_p_value=0.779466	major_base=T	major_cov=30/46	major_frequency=9.870e-01	minor_base=C	minor_cov=1/0	new_cov=30/46	polymorphism_frequency=9.870e-01	polymorphism_score=-5.0	prediction=consensus	ref_cov=1/0	total_cov=31/46
RA	4474	.	1	1816148	0	G	A	consensus_score=240.6	frequency=1	major_base=A	major_cov=36/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/45
RA	4475	.	1	1816228	0	C	A	bias_e_value=2102720	bias_p_value=1	consensus_score=185.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999548	major_base=A	major_cov=29/37	major_frequency=9.851e-01	minor_base=G	minor_cov=0/1	new_cov=29/37	polymorphism_frequency=9.851e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/38
RA	4476	.	1	1816256	0	A	G	consensus_score=200.6	frequency=1	major_base=G	major_cov=31/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/36
RA	4477	.	1	1816274	0	C	T	consensus_score=184.3	frequency=1	major_base=T	major_cov=31/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/32
RA	4478	.	1	1816284	0	C	T	consensus_score=173.2	frequency=1	major_base=T	major_cov=36/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/24
RA	4479	.	1	1816307	0	T	C	consensus_score=201.0	frequency=1	major_base=C	major_cov=40/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/28
RA	4480	.	1	1816322	0	T	C	consensus_score=190.1	frequency=1	major_base=C	major_cov=38/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/26
RA	4481	.	1	1816328	0	A	C	consensus_score=194.2	frequency=1	major_base=C	major_cov=39/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/26
RA	4482	.	1	1816340	0	A	G	consensus_score=187.1	frequency=1	major_base=G	major_cov=39/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/29
RA	4483	.	1	1816361	0	T	C	consensus_score=201.5	frequency=1	major_base=C	major_cov=38/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/33
RA	4484	.	1	1816385	0	T	C	consensus_score=206.2	frequency=1	major_base=C	major_cov=35/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/35
RA	4485	.	1	1816409	0	G	A	consensus_score=217.1	frequency=1	major_base=A	major_cov=36/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/39
RA	4486	.	1	1816432	0	T	C	consensus_score=233.0	frequency=1	major_base=C	major_cov=41/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/39
RA	4487	.	1	1816535	0	T	C	consensus_score=191.9	frequency=1	major_base=C	major_cov=35/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/32
RA	4488	.	1	1816556	0	T	C	consensus_score=180.6	frequency=1	major_base=C	major_cov=33/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/30
RA	4489	.	1	1816562	0	A	C	consensus_score=176.9	frequency=1	major_base=C	major_cov=31/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/31
RA	4490	.	1	1816601	0	A	G	consensus_score=168.1	frequency=1	major_base=G	major_cov=33/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/24
RA	4491	.	1	1816605	0	A	G	consensus_score=162.5	frequency=1	major_base=G	major_cov=33/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/24
RA	4492	.	1	1816634	0	C	T	consensus_score=204.5	frequency=1	major_base=T	major_cov=37/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/34
RA	4493	.	1	1816673	0	G	C	consensus_score=179.1	frequency=1	major_base=C	major_cov=31/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/32
RA	4494	.	1	1816676	0	A	G	consensus_score=183.4	frequency=1	major_base=G	major_cov=31/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/32
RA	4495	.	1	1816685	0	C	T	consensus_score=206.8	frequency=1	major_base=T	major_cov=38/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/32
RA	4496	.	1	1816694	0	C	T	bias_e_value=2101240	bias_p_value=0.999294	consensus_score=185.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.962663	major_base=T	major_cov=40/32	major_frequency=9.863e-01	minor_base=G	minor_cov=1/0	new_cov=40/32	polymorphism_frequency=9.863e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/32
RA	4497	.	1	1816701	0	C	T	consensus_score=214.5	frequency=1	major_base=T	major_cov=43/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/35
RA	4498	.	1	1816712	0	T	G	consensus_score=228.1	frequency=1	major_base=G	major_cov=44/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/37
RA	4499	.	1	1816721	0	C	T	consensus_score=217.6	frequency=1	major_base=T	major_cov=45/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/38
RA	4500	.	1	1816775	0	A	G	consensus_score=225.8	frequency=1	major_base=G	major_cov=36/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/44
RA	4501	.	1	1816784	0	G	A	consensus_score=243.6	frequency=1	major_base=A	major_cov=38/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/45
RA	4502	.	1	1816802	0	A	G	consensus_score=231.1	frequency=1	major_base=G	major_cov=37/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/45
RA	4503	.	1	1816865	0	C	T	consensus_score=194.2	frequency=1	major_base=T	major_cov=37/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/34
RA	4504	.	1	1816880	0	C	T	consensus_score=185.8	frequency=1	major_base=T	major_cov=35/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/29
RA	4505	.	1	1816904	0	G	A	consensus_score=188.2	frequency=1	major_base=A	major_cov=31/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/35
RA	4506	.	1	1816940	0	A	G	consensus_score=163.5	frequency=1	major_base=G	major_cov=23/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/33
RA	4507	.	1	1816964	0	C	T	consensus_score=134.3	frequency=1	major_base=T	major_cov=26/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/21
RA	4508	.	1	1816967	0	T	C	consensus_score=138.1	frequency=1	major_base=C	major_cov=26/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/21
RA	4509	.	1	1816997	0	A	G	consensus_score=156.2	frequency=1	major_base=G	major_cov=31/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/22
RA	4510	.	1	1817033	0	C	T	consensus_score=160.7	frequency=1	major_base=T	major_cov=32/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/26
RA	4511	.	1	1817048	0	G	T	bias_e_value=1651190	bias_p_value=0.785262	consensus_score=163.0	fisher_strand_p_value=0.421053	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=33/23	major_frequency=9.825e-01	minor_base=C	minor_cov=0/1	new_cov=33/23	polymorphism_frequency=9.825e-01	polymorphism_score=-6.5	prediction=consensus	ref_cov=0/0	total_cov=33/24
RA	4512	.	1	1817112	1	.	A	consensus_score=145.1	frequency=1	major_base=A	major_cov=27/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/24
RA	4513	.	1	1817119	0	T	.	consensus_score=196.4	frequency=1	major_base=.	major_cov=23/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/24
RA	4514	.	1	1817124	0	T	C	consensus_score=139.3	frequency=1	major_base=C	major_cov=23/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/24
RA	4515	.	1	1817129	0	C	A	consensus_score=134.3	frequency=1	major_base=A	major_cov=23/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/24
RA	4516	.	1	1817130	1	.	A	consensus_score=127.3	frequency=1	major_base=A	major_cov=23/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/21
RA	4517	.	1	1817145	0	A	G	consensus_score=113.9	frequency=1	major_base=G	major_cov=21/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/19
RA	4518	.	1	1817147	0	C	G	consensus_score=115.1	frequency=1	major_base=G	major_cov=21/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/19
RA	4519	.	1	1817148	0	G	A	consensus_score=110.9	frequency=1	major_base=A	major_cov=21/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/19
RA	4520	.	1	1817170	1	.	C	consensus_score=101.6	frequency=1	major_base=C	major_cov=20/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/17
RA	4521	.	1	1817171	0	T	G	consensus_score=104.7	frequency=1	major_base=G	major_cov=20/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/17
RA	4522	.	1	1817173	0	A	G	consensus_score=105.4	frequency=1	major_base=G	major_cov=20/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/17
RA	4523	.	1	1817177	0	G	A	consensus_score=105.7	frequency=1	major_base=A	major_cov=20/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/17
RA	4524	.	1	1817213	0	A	.	bias_e_value=632143	bias_p_value=0.300631	consensus_reject=FREQUENCY_CUTOFF	consensus_score=91.4	fisher_strand_p_value=0.467449	frequency=7.907e-01	ks_quality_p_value=0.187161	major_base=.	major_cov=17/17	major_frequency=7.907e-01	minor_base=A	minor_cov=3/6	new_cov=17/17	polymorphism_frequency=7.907e-01	polymorphism_score=32.4	prediction=polymorphism	ref_cov=3/6	total_cov=20/23
RA	4525	.	1	1817217	0	C	.	bias_e_value=30990	bias_p_value=0.0147381	consensus_reject=FREQUENCY_CUTOFF	consensus_score=89.6	fisher_strand_p_value=0.467449	frequency=2.093e-01	ks_quality_p_value=0.00438507	major_base=C	major_cov=17/17	major_frequency=7.907e-01	minor_base=.	minor_cov=3/6	new_cov=3/6	polymorphism_frequency=2.093e-01	polymorphism_score=28.8	prediction=polymorphism	ref_cov=17/17	total_cov=20/23
RA	4526	.	1	1817233	0	C	G	consensus_score=83.9	frequency=1	major_base=G	major_cov=13/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/18
RA	4527	.	1	1817234	0	A	G	consensus_score=87.6	frequency=1	major_base=G	major_cov=13/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/18
RA	4528	.	1	1817235	0	C	T	bias_e_value=146526	bias_p_value=0.0696838	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=7.4	fisher_strand_p_value=0.484035	frequency=6.129e-01	ks_quality_p_value=0.0269658	major_base=T	major_cov=9/10	major_frequency=6.129e-01	minor_base=C	minor_cov=4/8	new_cov=9/10	polymorphism_frequency=6.129e-01	polymorphism_score=23.9	prediction=polymorphism	ref_cov=4/8	total_cov=13/18
RA	4529	.	1	1817240	0	A	T	bias_e_value=261791	bias_p_value=0.124501	consensus_reject=FREQUENCY_CUTOFF	consensus_score=19.5	fisher_strand_p_value=0.484035	frequency=3.871e-01	ks_quality_p_value=0.0557694	major_base=A	major_cov=9/10	major_frequency=6.129e-01	minor_base=T	minor_cov=4/8	new_cov=4/8	polymorphism_frequency=3.871e-01	polymorphism_score=36.4	prediction=polymorphism	ref_cov=9/10	total_cov=13/18
RA	4530	.	1	1817243	0	C	T	bias_e_value=687356	bias_p_value=0.326889	consensus_reject=FREQUENCY_CUTOFF	consensus_score=10.4	fisher_strand_p_value=0.484035	frequency=3.871e-01	ks_quality_p_value=0.203583	major_base=C	major_cov=9/10	major_frequency=6.129e-01	minor_base=T	minor_cov=4/8	new_cov=4/8	polymorphism_frequency=3.871e-01	polymorphism_score=22.7	prediction=polymorphism	ref_cov=9/10	total_cov=13/18
RA	4531	.	1	1817244	0	G	A	bias_e_value=1189450	bias_p_value=0.56567	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=9.0	fisher_strand_p_value=0.465082	frequency=4.000e-01	ks_quality_p_value=0.491098	major_base=G	major_cov=9/9	major_frequency=6.000e-01	minor_base=A	minor_cov=4/8	new_cov=4/8	polymorphism_frequency=4.000e-01	polymorphism_score=22.4	prediction=polymorphism	ref_cov=9/9	total_cov=13/17
RA	4532	.	1	1817255	0	C	T	bias_e_value=5.3961	bias_p_value=2.56625e-06	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-3.0	fisher_strand_p_value=0.716841	frequency=5.484e-01	ks_quality_p_value=2.14525e-07	major_base=T	major_cov=8/9	major_frequency=5.484e-01	minor_base=C	minor_cov=5/9	new_cov=8/9	polymorphism_frequency=5.484e-01	polymorphism_score=31.5	prediction=polymorphism	ref_cov=5/9	total_cov=13/18
RA	4533	.	1	1817256	0	C	A	bias_e_value=942.584	bias_p_value=0.000448269	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=4.1	fisher_strand_p_value=0.716841	frequency=4.516e-01	ks_quality_p_value=5.62418e-05	major_base=C	major_cov=8/9	major_frequency=5.484e-01	minor_base=A	minor_cov=5/9	new_cov=5/9	polymorphism_frequency=4.516e-01	polymorphism_score=35.9	prediction=polymorphism	ref_cov=8/9	total_cov=13/18
RA	4534	.	1	1817263	0	G	A	consensus_score=35.0	frequency=1	major_base=A	major_cov=5/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/9
RA	4535	.	1	1817266	0	C	A	consensus_score=36.7	frequency=1	major_base=A	major_cov=5/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/9
RA	4536	.	1	1817293	0	C	T	consensus_score=43.6	frequency=1	major_base=T	major_cov=5/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/12
RA	4537	.	1	1817296	0	A	C	consensus_score=43.9	frequency=1	major_base=C	major_cov=5/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/12
RA	4538	.	1	1817308	0	C	T	consensus_score=42.5	frequency=1	major_base=T	major_cov=5/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/12
RA	4539	.	1	1817320	0	T	C	consensus_score=54.6	frequency=1	major_base=C	major_cov=7/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/12
RA	4540	.	1	1817349	0	T	C	consensus_score=55.8	frequency=1	major_base=C	major_cov=8/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/13
RA	4541	.	1	1817356	0	C	T	consensus_score=56.0	frequency=1	major_base=T	major_cov=8/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/13
RA	4542	.	1	1817358	0	G	A	consensus_score=56.2	frequency=1	major_base=A	major_cov=8/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/13
RA	4543	.	1	1817429	0	A	G	consensus_score=110.1	frequency=1	major_base=G	major_cov=18/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/21
RA	4544	.	1	1817447	0	G	A	consensus_score=127.3	frequency=1	major_base=A	major_cov=26/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/19
RA	4545	.	1	1817492	0	G	A	consensus_score=148.0	frequency=1	major_base=A	major_cov=31/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/21
RA	4546	.	1	1817498	0	T	C	consensus_score=153.6	frequency=1	major_base=C	major_cov=32/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/21
RA	4547	.	1	1817549	0	C	T	consensus_score=164.1	frequency=1	major_base=T	major_cov=34/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/23
RA	4548	.	1	1817615	0	C	T	consensus_score=167.2	frequency=1	major_base=T	major_cov=34/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/25
RA	4549	.	1	1817621	0	A	G	consensus_score=183.6	frequency=1	major_base=G	major_cov=34/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/26
RA	4550	.	1	1817624	0	A	G	consensus_score=183.5	frequency=1	major_base=G	major_cov=34/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/26
RA	4551	.	1	1817651	0	G	A	consensus_score=180.1	frequency=1	major_base=A	major_cov=39/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/24
RA	4552	.	1	1817663	0	A	G	consensus_score=178.4	frequency=1	major_base=G	major_cov=39/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/25
RA	4553	.	1	1817666	0	C	G	consensus_score=181.3	frequency=1	major_base=G	major_cov=39/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/25
RA	4554	.	1	1817714	0	A	G	consensus_score=175.9	frequency=1	major_base=G	major_cov=38/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/24
RA	4555	.	1	1817795	0	T	C	consensus_score=188.9	frequency=1	major_base=C	major_cov=36/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/27
RA	4556	.	1	1817804	0	T	C	consensus_score=186.3	frequency=1	major_base=C	major_cov=35/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/29
RA	4557	.	1	1817816	0	T	C	consensus_score=231.3	frequency=1	major_base=C	major_cov=42/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/38
RA	4558	.	1	1817825	0	A	G	consensus_score=206.0	frequency=1	major_base=G	major_cov=39/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/34
RA	4559	.	1	1817870	0	T	C	consensus_score=259.6	frequency=1	major_base=C	major_cov=45/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/39
RA	4560	.	1	1817981	0	G	A	consensus_score=270.8	frequency=1	major_base=A	major_cov=36/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/58
RA	4561	.	1	1818014	0	C	T	consensus_score=249.2	frequency=1	major_base=T	major_cov=36/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/51
RA	4562	.	1	1818047	0	C	T	consensus_score=233.9	frequency=1	major_base=T	major_cov=32/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/50
RA	4563	.	1	1818062	0	T	C	consensus_score=228.8	frequency=1	major_base=C	major_cov=32/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/44
RA	4564	.	1	1818122	0	C	T	consensus_score=180.7	frequency=1	major_base=T	major_cov=32/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/32
RA	4565	.	1	1818136	0	G	A	consensus_score=182.9	frequency=1	major_base=A	major_cov=34/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/31
RA	4566	.	1	1818140	0	T	C	consensus_score=189.5	frequency=1	major_base=C	major_cov=33/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/31
RA	4567	.	1	1818179	0	C	T	consensus_score=190.3	frequency=1	major_base=T	major_cov=31/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/36
RA	4568	.	1	1818242	0	T	C	consensus_score=164.6	frequency=1	major_base=C	major_cov=26/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/28
RA	4569	.	1	1818263	0	T	C	consensus_score=158.6	frequency=1	major_base=C	major_cov=26/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/30
RA	4570	.	1	1818293	0	T	C	consensus_score=164.5	frequency=1	major_base=C	major_cov=28/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/26
RA	4571	.	1	1818374	0	C	T	consensus_score=169.9	frequency=1	major_base=T	major_cov=27/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/32
RA	4572	.	1	1818493	0	G	C	consensus_score=180.1	frequency=1	major_base=C	major_cov=30/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/29
RA	4573	.	1	1818548	0	A	G	consensus_score=181.5	frequency=1	major_base=G	major_cov=31/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/32
RA	4574	.	1	1818563	0	C	G	consensus_score=193.4	frequency=1	major_base=G	major_cov=33/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/34
RA	4575	.	1	1818668	0	T	C	consensus_score=230.8	frequency=1	major_base=C	major_cov=40/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/35
RA	4576	.	1	1818721	0	C	T	consensus_score=252.0	frequency=1	major_base=T	major_cov=41/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/42
RA	4577	.	1	1818828	0	T	C	consensus_score=142.4	frequency=1	major_base=C	major_cov=25/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/27
RA	4578	.	1	1818860	0	G	T	consensus_score=170.8	frequency=1	major_base=T	major_cov=28/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/32
RA	4579	.	1	1818868	0	A	G	consensus_score=177.4	frequency=1	major_base=G	major_cov=30/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/30
RA	4580	.	1	1818892	0	C	T	consensus_score=183.7	frequency=1	major_base=T	major_cov=30/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/35
RA	4581	.	1	1818937	0	A	G	consensus_score=226.8	frequency=1	major_base=G	major_cov=35/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/40
RA	4582	.	1	1818988	0	A	G	consensus_score=206.3	frequency=1	major_base=G	major_cov=35/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/39
RA	4583	.	1	1818996	0	T	C	consensus_score=230.2	frequency=1	major_base=C	major_cov=39/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/38
RA	4584	.	1	1819009	0	A	G	consensus_score=206.0	frequency=1	major_base=G	major_cov=33/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/34
RA	4585	.	1	1819083	0	T	G	consensus_score=212.1	frequency=1	major_base=G	major_cov=33/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/41
RA	4586	.	1	1819098	0	G	A	consensus_score=205.3	frequency=1	major_base=A	major_cov=33/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/40
RA	4587	.	1	1819123	0	A	G	consensus_score=204.3	frequency=1	major_base=G	major_cov=33/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/36
RA	4588	.	1	1819140	0	A	G	consensus_score=194.1	frequency=1	major_base=G	major_cov=34/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/34
RA	4589	.	1	1819165	0	C	A	consensus_score=184.8	frequency=1	major_base=A	major_cov=33/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/32
RA	4590	.	1	1819207	0	T	G	consensus_score=168.9	frequency=1	major_base=G	major_cov=35/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/25
RA	4591	.	1	1819245	0	G	A	consensus_score=188.5	frequency=1	major_base=A	major_cov=34/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/32
RA	4592	.	1	1819311	0	A	G	consensus_score=193.9	frequency=1	major_base=G	major_cov=36/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/30
RA	4593	.	1	1819321	0	G	T	consensus_score=193.0	frequency=1	major_base=T	major_cov=37/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/30
RA	4594	.	1	1819333	0	C	T	consensus_score=192.6	frequency=1	major_base=T	major_cov=36/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/31
RA	4595	.	1	1819354	0	C	T	consensus_score=220.6	frequency=1	major_base=T	major_cov=39/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/39
RA	4596	.	1	1819369	0	G	A	consensus_score=233.5	frequency=1	major_base=A	major_cov=40/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/40
RA	4597	.	1	1819414	0	G	A	consensus_score=206.0	frequency=1	major_base=A	major_cov=34/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/38
RA	4598	.	1	1819435	0	C	T	consensus_score=194.8	frequency=1	major_base=T	major_cov=30/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/35
RA	4599	.	1	1819496	0	T	C	consensus_score=205.6	frequency=1	major_base=C	major_cov=35/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/32
RA	4600	.	1	1819564	0	G	A	consensus_score=206.6	frequency=1	major_base=A	major_cov=33/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/39
RA	4601	.	1	1819624	0	C	T	bias_e_value=2102720	bias_p_value=1	consensus_score=199.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=36/30	major_frequency=9.851e-01	minor_base=A	minor_cov=1/0	new_cov=36/30	polymorphism_frequency=9.851e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/30
RA	4602	.	1	1819627	0	A	G	consensus_score=194.6	frequency=1	major_base=G	major_cov=37/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/30
RA	4603	.	1	1819687	0	A	G	consensus_score=221.4	frequency=1	major_base=G	major_cov=42/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/37
RA	4604	.	1	1819780	0	G	A	consensus_score=208.1	frequency=1	major_base=A	major_cov=34/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/39
RA	4605	.	1	1819807	0	C	A	consensus_score=227.2	frequency=1	major_base=A	major_cov=38/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/40
RA	4606	.	1	1819809	0	A	G	consensus_score=233.8	frequency=1	major_base=G	major_cov=38/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/40
RA	4607	.	1	1819825	0	T	C	consensus_score=217.5	frequency=1	major_base=C	major_cov=33/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/43
RA	4608	.	1	1819840	0	T	C	consensus_score=227.4	frequency=1	major_base=C	major_cov=33/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/42
RA	4609	.	1	1819843	0	A	G	consensus_score=219.3	frequency=1	major_base=G	major_cov=33/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/42
RA	4610	.	1	1819859	0	A	G	consensus_score=224.3	frequency=1	major_base=G	major_cov=30/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/46
RA	4611	.	1	1819876	0	T	C	consensus_score=219.1	frequency=1	major_base=C	major_cov=28/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/44
RA	4612	.	1	1820101	0	T	A	consensus_score=224.1	frequency=1	major_base=A	major_cov=37/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/40
RA	4613	.	1	1820104	0	A	G	consensus_score=218.6	frequency=1	major_base=G	major_cov=37/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/40
RA	4614	.	1	1820185	0	C	T	consensus_score=237.1	frequency=1	major_base=T	major_cov=38/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/42
RA	4615	.	1	1820254	0	A	G	consensus_score=232.3	frequency=1	major_base=G	major_cov=34/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/43
RA	4616	.	1	1820266	0	C	T	bias_e_value=1711280	bias_p_value=0.813841	consensus_score=226.0	fisher_strand_p_value=0.455696	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=35/43	major_frequency=9.873e-01	minor_base=A	minor_cov=1/0	new_cov=35/43	polymorphism_frequency=9.873e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/43
RA	4617	.	1	1820277	0	A	G	consensus_score=227.2	frequency=1	major_base=G	major_cov=33/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/43
RA	4618	.	1	1820299	0	A	G	consensus_score=222.0	frequency=1	major_base=G	major_cov=34/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/40
RA	4619	.	1	1820311	0	A	C	consensus_score=219.5	frequency=1	major_base=C	major_cov=31/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/42
RA	4620	.	1	1820325	0	A	G	consensus_score=212.0	frequency=1	major_base=G	major_cov=34/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/38
RA	4621	.	1	1820326	0	G	C	consensus_score=207.5	frequency=1	major_base=C	major_cov=34/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/38
RA	4622	.	1	1820329	0	T	C	consensus_score=203.3	frequency=1	major_base=C	major_cov=34/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/38
RA	4623	.	1	1820337	0	T	C	consensus_score=209.6	frequency=1	major_base=C	major_cov=35/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/34
RA	4624	.	1	1820377	0	T	C	consensus_score=211.3	frequency=1	major_base=C	major_cov=40/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/29
RA	4625	.	1	1820409	0	G	A	consensus_score=182.7	frequency=1	major_base=A	major_cov=39/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/25
RA	4626	.	1	1820413	0	T	C	consensus_score=186.8	frequency=1	major_base=C	major_cov=38/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/24
RA	4627	.	1	1820440	0	T	C	consensus_score=176.1	frequency=1	major_base=C	major_cov=38/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/22
RA	4628	.	1	1820518	0	G	A	consensus_score=180.0	frequency=1	major_base=A	major_cov=45/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/19
RA	4629	.	1	1820539	0	G	A	consensus_score=188.7	frequency=1	major_base=A	major_cov=50/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/17
RA	4630	.	1	1820578	0	T	C	consensus_score=155.0	frequency=1	major_base=C	major_cov=37/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/18
RA	4631	.	1	1820583	0	T	C	consensus_score=160.9	frequency=1	major_base=C	major_cov=37/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/18
RA	4632	.	1	1820650	0	A	C	consensus_score=159.8	frequency=1	major_base=C	major_cov=31/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/22
RA	4633	.	1	1820695	0	T	C	bias_e_value=2102720	bias_p_value=1	consensus_score=143.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=22/25	major_frequency=9.792e-01	minor_base=A	minor_cov=0/1	new_cov=22/25	polymorphism_frequency=9.792e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/26
RA	4634	.	1	1820710	0	T	G	consensus_score=124.9	frequency=1	major_base=G	major_cov=17/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/25
RA	4635	.	1	1820735	0	G	A	consensus_score=115.3	frequency=1	major_base=A	major_cov=19/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/22
RA	4636	.	1	1820755	0	C	T	consensus_score=120.9	frequency=1	major_base=T	major_cov=17/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/27
RA	4637	.	1	1820761	0	G	A	consensus_score=122.3	frequency=1	major_base=A	major_cov=18/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/26
RA	4638	.	1	1820766	0	C	T	consensus_score=128.0	frequency=1	major_base=T	major_cov=18/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/28
RA	4639	.	1	1820778	0	C	T	consensus_score=123.9	frequency=1	major_base=T	major_cov=18/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/27
RA	4640	.	1	1820788	0	C	T	consensus_score=120.1	frequency=1	major_base=T	major_cov=18/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/26
RA	4641	.	1	1820804	0	T	C	consensus_score=134.9	frequency=1	major_base=C	major_cov=16/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/28
RA	4642	.	1	1820875	0	C	A	consensus_score=121.9	frequency=1	major_base=A	major_cov=21/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/23
RA	4643	.	1	1820926	0	G	A	consensus_score=153.1	frequency=1	major_base=A	major_cov=29/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/25
RA	4644	.	1	1820982	0	G	A	consensus_score=181.5	frequency=1	major_base=A	major_cov=36/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/28
RA	4645	.	1	1820987	0	C	T	consensus_score=183.6	frequency=1	major_base=T	major_cov=36/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/28
RA	4646	.	1	1821135	0	A	C	consensus_score=246.1	frequency=1	major_base=C	major_cov=51/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/30
RA	4647	.	1	1821237	0	T	C	consensus_score=215.8	frequency=1	major_base=C	major_cov=41/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/33
RA	4648	.	1	1821270	0	G	A	consensus_score=213.3	frequency=1	major_base=A	major_cov=41/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/33
RA	4649	.	1	1821279	0	C	T	consensus_score=217.1	frequency=1	major_base=T	major_cov=40/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/35
RA	4650	.	1	1821287	0	A	G	consensus_score=227.1	frequency=1	major_base=G	major_cov=39/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/35
RA	4651	.	1	1821458	0	C	T	consensus_score=187.1	frequency=1	major_base=T	major_cov=31/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/35
RA	4652	.	1	1821462	0	T	C	consensus_score=180.7	frequency=1	major_base=C	major_cov=29/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/34
RA	4653	.	1	1821465	0	T	C	consensus_score=177.2	frequency=1	major_base=C	major_cov=29/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/34
RA	4654	.	1	1821471	0	T	C	consensus_score=181.0	frequency=1	major_base=C	major_cov=28/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/36
RA	4655	.	1	1821484	0	C	T	consensus_score=171.1	frequency=1	major_base=T	major_cov=25/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/35
RA	4656	.	1	1821552	0	C	T	consensus_score=165.7	frequency=1	major_base=T	major_cov=28/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/30
RA	4657	.	1	1821564	0	A	C	consensus_score=169.0	frequency=1	major_base=C	major_cov=26/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/31
RA	4658	.	1	1821573	0	A	G	consensus_score=180.0	frequency=1	major_base=G	major_cov=28/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/32
RA	4659	.	1	1821633	0	C	G	consensus_score=183.9	frequency=1	major_base=G	major_cov=32/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/32
RA	4660	.	1	1821642	0	T	C	consensus_score=199.8	frequency=1	major_base=C	major_cov=36/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/31
RA	4661	.	1	1821687	0	G	A	consensus_score=181.5	frequency=1	major_base=A	major_cov=34/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/30
RA	4662	.	1	1821693	0	G	A	consensus_score=176.9	frequency=1	major_base=A	major_cov=34/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/30
RA	4663	.	1	1821698	0	C	T	consensus_score=186.9	frequency=1	major_base=T	major_cov=34/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/29
RA	4664	.	1	1821702	0	A	G	consensus_score=178.9	frequency=1	major_base=G	major_cov=34/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/29
RA	4665	.	1	1821705	0	G	A	consensus_score=190.9	frequency=1	major_base=A	major_cov=34/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/29
RA	4666	.	1	1821711	0	T	C	consensus_score=188.8	frequency=1	major_base=C	major_cov=34/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/29
RA	4667	.	1	1821714	0	A	G	consensus_score=192.0	frequency=1	major_base=G	major_cov=34/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/29
RA	4668	.	1	1821735	0	C	T	consensus_score=172.3	frequency=1	major_base=T	major_cov=32/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/28
RA	4669	.	1	1821738	0	C	T	consensus_score=171.1	frequency=1	major_base=T	major_cov=32/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/28
RA	4670	.	1	1821756	0	A	G	consensus_score=161.7	frequency=1	major_base=G	major_cov=31/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/27
RA	4671	.	1	1821780	0	G	C	consensus_score=147.4	frequency=1	major_base=C	major_cov=24/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/28
RA	4672	.	1	1821783	0	T	C	consensus_score=149.9	frequency=1	major_base=C	major_cov=24/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/28
RA	4673	.	1	1821786	0	C	T	consensus_score=150.8	frequency=1	major_base=T	major_cov=24/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/28
RA	4674	.	1	1821792	0	G	A	consensus_score=143.3	frequency=1	major_base=A	major_cov=24/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/26
RA	4675	.	1	1821807	0	T	A	consensus_score=131.2	frequency=1	major_base=A	major_cov=23/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/25
RA	4676	.	1	1821816	0	A	T	consensus_score=137.1	frequency=1	major_base=T	major_cov=22/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/26
RA	4677	.	1	1821828	0	G	A	consensus_score=115.9	frequency=1	major_base=A	major_cov=21/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/20
RA	4678	.	1	1821849	0	A	G	consensus_score=122.7	frequency=1	major_base=G	major_cov=17/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/25
RA	4679	.	1	1821852	0	G	A	consensus_score=121.8	frequency=1	major_base=A	major_cov=17/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/25
RA	4680	.	1	1821855	0	A	G	consensus_score=119.1	frequency=1	major_base=G	major_cov=17/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/25
RA	4681	.	1	1821861	0	A	G	consensus_score=117.1	frequency=1	major_base=G	major_cov=16/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/25
RA	4682	.	1	1821870	0	G	A	consensus_score=80.3	frequency=1	major_base=A	major_cov=6/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/23
RA	4683	.	1	1821873	0	C	T	consensus_score=77.0	frequency=1	major_base=T	major_cov=6/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/23
RA	4684	.	1	1821876	0	A	G	consensus_score=80.4	frequency=1	major_base=G	major_cov=6/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/23
RA	4685	.	1	1821879	0	A	G	consensus_score=82.9	frequency=1	major_base=G	major_cov=6/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/23
RA	4686	.	1	1821882	0	A	G	consensus_score=83.8	frequency=1	major_base=G	major_cov=6/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/23
RA	4687	.	1	1821887	0	G	T	consensus_score=79.0	frequency=1	major_base=T	major_cov=6/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/23
RA	4688	.	1	1821888	0	G	T	consensus_score=85.3	frequency=1	major_base=T	major_cov=6/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/23
RA	4689	.	1	1821891	0	G	T	consensus_score=76.7	frequency=1	major_base=T	major_cov=6/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/23
RA	4690	.	1	1821897	0	A	G	consensus_score=84.8	frequency=1	major_base=G	major_cov=6/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/23
RA	4691	.	1	1821900	0	T	C	consensus_score=87.5	frequency=1	major_base=C	major_cov=6/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/23
RA	4692	.	1	1821903	0	G	A	consensus_score=80.0	frequency=1	major_base=A	major_cov=6/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/23
RA	4693	.	1	1821909	0	C	A	consensus_score=102.1	frequency=1	major_base=A	major_cov=9/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/28
RA	4694	.	1	1821918	0	G	T	consensus_score=105.8	frequency=1	major_base=T	major_cov=10/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/29
RA	4695	.	1	1821924	0	C	T	consensus_score=116.6	frequency=1	major_base=T	major_cov=10/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/29
RA	4696	.	1	1821927	0	A	G	consensus_score=110.3	frequency=1	major_base=G	major_cov=10/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/29
RA	4697	.	1	1821930	0	A	G	consensus_score=112.6	frequency=1	major_base=G	major_cov=10/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/29
RA	4698	.	1	1821936	0	G	A	consensus_score=108.8	frequency=1	major_base=A	major_cov=10/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/29
RA	4699	.	1	1821956	0	A	C	consensus_score=142.8	frequency=1	major_base=C	major_cov=17/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/30
RA	4700	.	1	1821963	0	G	A	consensus_score=143.8	frequency=1	major_base=A	major_cov=17/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/34
RA	4701	.	1	1821994	0	T	C	consensus_score=149.4	frequency=1	major_base=C	major_cov=16/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/33
RA	4702	.	1	1822008	0	T	A	consensus_score=127.5	frequency=1	major_base=A	major_cov=19/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/26
RA	4703	.	1	1822010	0	T	G	consensus_score=130.9	frequency=1	major_base=G	major_cov=19/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/26
RA	4704	.	1	1822014	0	A	C	consensus_score=126.0	frequency=1	major_base=C	major_cov=19/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/26
RA	4705	.	1	1822019	0	G	A	consensus_score=132.1	frequency=1	major_base=A	major_cov=19/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/26
RA	4706	.	1	1822021	0	G	T	consensus_score=122.6	frequency=1	major_base=T	major_cov=19/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/26
RA	4707	.	1	1822023	0	G	A	consensus_score=125.2	frequency=1	major_base=A	major_cov=19/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/26
RA	4708	.	1	1822522	0	G	C	consensus_score=127.3	frequency=1	major_base=C	major_cov=21/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/22
RA	4709	.	1	1824468	0	G	A	consensus_score=204.7	frequency=1	major_base=A	major_cov=27/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/44
RA	4710	.	1	1824789	0	T	G	consensus_score=47.5	deleted=1	frequency=1	major_base=G	major_cov=10/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/8
RA	4711	.	1	1825146	0	G	A	consensus_score=164.7	frequency=1	major_base=A	major_cov=31/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/27
RA	4712	.	1	1826758	0	C	G	bias_e_value=746652	bias_p_value=0.355089	consensus_score=151.2	fisher_strand_p_value=0.111039	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=37/17	major_frequency=9.643e-01	minor_base=C	minor_cov=0/2	new_cov=37/17	polymorphism_frequency=9.643e-01	polymorphism_score=-5.9	prediction=consensus	ref_cov=0/2	total_cov=37/19
RA	4713	.	1	1827043	0	G	A	consensus_score=184.4	frequency=1	major_base=A	major_cov=26/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/36
RA	4714	.	1	1827153	0	G	T	consensus_score=162.3	frequency=1	major_base=T	major_cov=25/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/30
RA	4715	.	1	1827226	0	C	A	bias_e_value=1650710	bias_p_value=0.785034	consensus_score=166.2	fisher_strand_p_value=0.421053	frequency=1	ks_quality_p_value=0.999374	major_base=A	major_cov=23/33	major_frequency=9.825e-01	minor_base=C	minor_cov=1/0	new_cov=23/33	polymorphism_frequency=9.825e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=24/33
RA	4716	.	1	1827440	0	T	C	consensus_score=184.0	frequency=1	major_base=C	major_cov=33/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/29
RA	4717	.	1	1827609	0	G	A	consensus_score=197.5	frequency=1	major_base=A	major_cov=35/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/31
RA	4718	.	1	1827795	1	.	T	consensus_score=228.1	frequency=1	major_base=T	major_cov=41/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/35
RA	4719	.	1	1828025	0	A	G	consensus_score=232.1	frequency=1	major_base=G	major_cov=38/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/39
RA	4720	.	1	1828074	0	T	C	consensus_score=195.2	frequency=1	major_base=C	major_cov=30/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/35
RA	4721	.	1	1828086	0	G	T	consensus_score=198.0	frequency=1	major_base=T	major_cov=32/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/35
RA	4722	.	1	1828110	0	T	C	consensus_score=179.2	frequency=1	major_base=C	major_cov=29/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/33
RA	4723	.	1	1828143	0	C	T	consensus_score=200.6	frequency=1	major_base=T	major_cov=30/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/41
RA	4724	.	1	1828177	0	T	C	consensus_score=195.5	frequency=1	major_base=C	major_cov=30/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/38
RA	4725	.	1	1828233	0	T	C	consensus_score=200.2	frequency=1	major_base=C	major_cov=27/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/39
RA	4726	.	1	1828266	0	G	A	consensus_score=187.3	frequency=1	major_base=A	major_cov=25/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/40
RA	4727	.	1	1828377	0	C	T	consensus_score=212.1	frequency=1	major_base=T	major_cov=39/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/32
RA	4728	.	1	1828379	0	T	C	consensus_score=209.2	frequency=1	major_base=C	major_cov=39/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/32
RA	4729	.	1	1828390	0	A	T	consensus_score=222.8	frequency=1	major_base=T	major_cov=44/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/33
RA	4730	.	1	1828554	0	T	G	bias_e_value=1.42215e-05	bias_p_value=6.7634e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=144.5	fisher_strand_p_value=2.24512e-13	frequency=3.210e-01	ks_quality_p_value=1	major_base=T	major_cov=10/45	major_frequency=6.790e-01	minor_base=G	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=3.210e-01	polymorphism_score=10.1	prediction=polymorphism	ref_cov=10/45	total_cov=36/45
RA	4731	.	1	1828564	0	A	G	bias_e_value=572192	bias_p_value=0.27212	consensus_score=198.5	fisher_strand_p_value=0.083685	frequency=1	ks_quality_p_value=0.909403	major_base=G	major_cov=33/45	major_frequency=9.630e-01	minor_base=C	minor_cov=3/0	new_cov=33/45	polymorphism_frequency=9.630e-01	polymorphism_score=-5.3	prediction=consensus	ref_cov=0/0	total_cov=36/45
RA	4732	.	1	1828573	0	C	A	consensus_score=233.0	frequency=1	major_base=A	major_cov=32/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/47
RA	4733	.	1	1828597	0	A	G	consensus_score=217.5	frequency=1	major_base=G	major_cov=32/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/45
RA	4734	.	1	1828624	0	A	G	bias_e_value=1711590	bias_p_value=0.813987	consensus_score=173.7	fisher_strand_p_value=0.455882	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=30/37	major_frequency=9.853e-01	minor_base=A	minor_cov=1/0	new_cov=30/37	polymorphism_frequency=9.853e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=31/37
RA	4735	.	1	1828639	0	T	C	consensus_score=180.3	frequency=1	major_base=C	major_cov=30/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/33
RA	4736	.	1	1828642	0	T	G	consensus_score=179.2	frequency=1	major_base=G	major_cov=30/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/33
RA	4737	.	1	1828645	0	C	T	bias_e_value=394601	bias_p_value=0.187662	consensus_score=149.0	fisher_strand_p_value=0.0460074	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=26/33	major_frequency=9.365e-01	minor_base=C	minor_cov=4/0	new_cov=26/33	polymorphism_frequency=9.365e-01	polymorphism_score=-5.8	prediction=consensus	ref_cov=4/0	total_cov=30/33
RA	4738	.	1	1828648	0	T	C	consensus_score=166.6	frequency=1	major_base=C	major_cov=30/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/33
RA	4739	.	1	1828650	0	G	A	bias_e_value=1744190	bias_p_value=0.829494	consensus_score=177.1	fisher_strand_p_value=0.47619	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=29/33	major_frequency=9.841e-01	minor_base=G	minor_cov=1/0	new_cov=29/33	polymorphism_frequency=9.841e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=30/33
RA	4740	.	1	1828696	0	A	G	consensus_score=200.7	frequency=1	major_base=G	major_cov=39/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/34
RA	4741	.	1	1828705	0	T	C	consensus_score=221.8	frequency=1	major_base=C	major_cov=42/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/35
RA	4742	.	1	1828736	0	C	T	consensus_score=192.1	frequency=1	major_base=T	major_cov=37/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/32
RA	4743	.	1	1828753	0	G	A	bias_e_value=1703750	bias_p_value=0.810259	consensus_score=180.1	fisher_strand_p_value=0.454545	frequency=1	ks_quality_p_value=0.992569	major_base=A	major_cov=36/29	major_frequency=9.848e-01	minor_base=G	minor_cov=0/1	new_cov=36/29	polymorphism_frequency=9.848e-01	polymorphism_score=-4.8	prediction=consensus	ref_cov=0/1	total_cov=37/30
RA	4744	.	1	1828759	0	T	C	bias_e_value=1639320	bias_p_value=0.779619	consensus_score=182.6	fisher_strand_p_value=0.415385	frequency=1	ks_quality_p_value=0.998079	major_base=C	major_cov=38/26	major_frequency=9.846e-01	minor_base=T	minor_cov=0/1	new_cov=38/26	polymorphism_frequency=9.846e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=0/1	total_cov=38/27
RA	4745	.	1	1828762	0	C	T	bias_e_value=2102720	bias_p_value=1	consensus_score=179.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=36/26	major_frequency=9.538e-01	minor_base=C	minor_cov=2/1	new_cov=36/26	polymorphism_frequency=9.538e-01	polymorphism_score=NA	prediction=consensus	ref_cov=2/1	total_cov=38/27
RA	4746	.	1	1828787	0	C	T	consensus_score=192.2	frequency=1	major_base=T	major_cov=39/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/26
RA	4747	.	1	1828792	0	T	C	bias_e_value=1593600	bias_p_value=0.757874	consensus_score=181.4	fisher_strand_p_value=0.4	frequency=1	ks_quality_p_value=0.976718	major_base=C	major_cov=39/25	major_frequency=9.846e-01	minor_base=T	minor_cov=0/1	new_cov=39/25	polymorphism_frequency=9.846e-01	polymorphism_score=-4.7	prediction=consensus	ref_cov=0/1	total_cov=39/26
RA	4748	.	1	1828840	0	T	C	bias_e_value=1611450	bias_p_value=0.766365	consensus_score=199.5	fisher_strand_p_value=0.4	frequency=1	ks_quality_p_value=0.999586	major_base=C	major_cov=42/27	major_frequency=9.857e-01	minor_base=T	minor_cov=0/1	new_cov=42/27	polymorphism_frequency=9.857e-01	polymorphism_score=-4.9	prediction=consensus	ref_cov=0/1	total_cov=42/28
RA	4749	.	1	1828890	0	T	G	bias_e_value=1501210	bias_p_value=0.713936	consensus_score=200.3	fisher_strand_p_value=0.347222	frequency=1	ks_quality_p_value=0.998436	major_base=G	major_cov=47/24	major_frequency=9.861e-01	minor_base=T	minor_cov=0/1	new_cov=47/24	polymorphism_frequency=9.861e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=47/25
RA	4750	.	1	1828894	0	T	C	bias_e_value=1497580	bias_p_value=0.712212	consensus_score=202.7	fisher_strand_p_value=0.347222	frequency=1	ks_quality_p_value=0.99376	major_base=C	major_cov=47/24	major_frequency=9.861e-01	minor_base=T	minor_cov=0/1	new_cov=47/24	polymorphism_frequency=9.861e-01	polymorphism_score=-4.6	prediction=consensus	ref_cov=0/1	total_cov=47/25
RA	4751	.	1	1828896	0	G	A	bias_e_value=1425390	bias_p_value=0.677877	consensus_score=208.8	fisher_strand_p_value=0.347222	frequency=1	ks_quality_p_value=0.904696	major_base=A	major_cov=47/24	major_frequency=9.861e-01	minor_base=G	minor_cov=0/1	new_cov=47/24	polymorphism_frequency=9.861e-01	polymorphism_score=-4.8	prediction=consensus	ref_cov=0/1	total_cov=47/25
RA	4752	.	1	1828951	0	C	T	bias_e_value=1606470	bias_p_value=0.763997	consensus_score=204.4	fisher_strand_p_value=0.39726	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=44/28	major_frequency=9.863e-01	minor_base=C	minor_cov=0/1	new_cov=44/28	polymorphism_frequency=9.863e-01	polymorphism_score=-5.8	prediction=consensus	ref_cov=0/1	total_cov=44/29
RA	4753	.	1	1828975	0	G	A	bias_e_value=1454060	bias_p_value=0.691514	consensus_score=205.7	fisher_strand_p_value=0.342857	frequency=1	ks_quality_p_value=0.951131	major_base=A	major_cov=46/23	major_frequency=9.857e-01	minor_base=G	minor_cov=0/1	new_cov=46/23	polymorphism_frequency=9.857e-01	polymorphism_score=-4.8	prediction=consensus	ref_cov=0/1	total_cov=46/24
RA	4754	.	1	1829038	0	G	A	consensus_score=161.6	frequency=1	major_base=A	major_cov=33/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/22
RA	4755	.	1	1829041	0	G	A	consensus_score=155.7	frequency=1	major_base=A	major_cov=33/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/22
RA	4756	.	1	1829062	0	C	T	consensus_score=151.0	frequency=1	major_base=T	major_cov=32/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/23
RA	4757	.	1	1829068	0	C	T	consensus_score=156.0	frequency=1	major_base=T	major_cov=32/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/23
RA	4758	.	1	1829074	0	C	T	consensus_score=161.4	frequency=1	major_base=T	major_cov=32/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/23
RA	4759	.	1	1829083	0	G	A	consensus_score=161.3	frequency=1	major_base=A	major_cov=32/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/23
RA	4760	.	1	1829209	0	A	G	consensus_score=156.5	frequency=1	major_base=G	major_cov=20/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/35
RA	4761	.	1	1829217	0	T	G	consensus_score=153.1	frequency=1	major_base=G	major_cov=19/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/35
RA	4762	.	1	1829224	0	A	G	consensus_score=162.2	frequency=1	major_base=G	major_cov=20/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/36
RA	4763	.	1	1829266	0	A	G	consensus_score=170.0	frequency=1	major_base=G	major_cov=25/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/33
RA	4764	.	1	1829293	0	G	A	consensus_score=167.8	frequency=1	major_base=A	major_cov=24/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/35
RA	4765	.	1	1829297	0	G	A	consensus_score=155.9	frequency=1	major_base=A	major_cov=24/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/33
RA	4766	.	1	1829300	0	G	A	bias_e_value=1785560	bias_p_value=0.849165	consensus_score=152.3	fisher_strand_p_value=0.503759	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=24/31	major_frequency=9.649e-01	minor_base=C	minor_cov=0/2	new_cov=24/31	polymorphism_frequency=9.649e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/33
RA	4767	.	1	1829306	0	C	G	consensus_score=172.0	frequency=1	major_base=G	major_cov=22/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/37
RA	4768	.	1	1829317	0	G	A	consensus_score=166.2	frequency=1	major_base=A	major_cov=22/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/36
RA	4769	.	1	1829450	0	A	G	consensus_score=222.7	frequency=1	major_base=G	major_cov=41/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/37
RA	4770	.	1	1829556	0	T	C	consensus_score=229.7	frequency=1	major_base=C	major_cov=44/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/37
RA	4771	.	1	1829566	0	A	G	consensus_score=224.3	frequency=1	major_base=G	major_cov=43/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/36
RA	4772	.	1	1829618	0	A	G	consensus_score=179.3	frequency=1	major_base=G	major_cov=31/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/32
RA	4773	.	1	1829619	0	T	C	consensus_score=179.5	frequency=1	major_base=C	major_cov=31/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/32
RA	4774	.	1	1829620	0	A	G	consensus_score=185.3	frequency=1	major_base=G	major_cov=31/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/32
RA	4775	.	1	1829626	0	T	C	consensus_score=202.4	frequency=1	major_base=C	major_cov=34/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/33
RA	4776	.	1	1829636	0	A	G	consensus_score=205.7	frequency=1	major_base=G	major_cov=37/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/33
RA	4777	.	1	1829637	0	G	C	consensus_score=209.3	frequency=1	major_base=C	major_cov=37/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/33
RA	4778	.	1	1829743	0	T	C	consensus_score=213.8	frequency=1	major_base=C	major_cov=36/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/36
RA	4779	.	1	1829963	0	G	A	consensus_score=228.4	frequency=1	major_base=A	major_cov=32/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/44
RA	4780	.	1	1829983	0	G	A	bias_e_value=2102720	bias_p_value=1	consensus_score=223.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=36/42	major_frequency=9.873e-01	minor_base=G	minor_cov=0/1	new_cov=36/42	polymorphism_frequency=9.873e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=36/43
RA	4781	.	1	1830002	0	A	G	consensus_score=236.5	frequency=1	major_base=G	major_cov=38/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/43
RA	4782	.	1	1830011	0	C	T	consensus_score=221.4	frequency=1	major_base=T	major_cov=39/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/38
RA	4783	.	1	1830049	0	T	C	consensus_score=240.2	frequency=1	major_base=C	major_cov=39/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/40
RA	4784	.	1	1830055	0	C	T	consensus_score=226.2	frequency=1	major_base=T	major_cov=39/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/39
RA	4785	.	1	1830064	0	G	A	consensus_score=245.0	frequency=1	major_base=A	major_cov=42/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/41
RA	4786	.	1	1830101	0	G	T	consensus_score=208.8	frequency=1	major_base=T	major_cov=42/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/30
RA	4787	.	1	1830113	0	C	A	consensus_score=187.9	frequency=1	major_base=A	major_cov=36/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/27
RA	4788	.	1	1830115	0	G	A	consensus_score=180.5	frequency=1	major_base=A	major_cov=36/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/27
RA	4789	.	1	1830121	0	A	G	bias_e_value=2102710	bias_p_value=0.999996	consensus_score=151.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.99731	major_base=G	major_cov=30/24	major_frequency=9.818e-01	minor_base=.	minor_cov=1/0	new_cov=30/24	polymorphism_frequency=9.818e-01	polymorphism_score=-3.9	prediction=consensus	ref_cov=0/0	total_cov=31/24
RA	4790	.	1	1830122	0	T	C	bias_e_value=2102720	bias_p_value=1	consensus_score=145.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=30/24	major_frequency=9.818e-01	minor_base=G	minor_cov=1/0	new_cov=30/24	polymorphism_frequency=9.818e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/24
RA	4791	.	1	1830123	0	T	G	bias_e_value=2102720	bias_p_value=1	consensus_score=151.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999327	major_base=G	major_cov=30/24	major_frequency=9.818e-01	minor_base=C	minor_cov=1/0	new_cov=30/24	polymorphism_frequency=9.818e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=0/0	total_cov=31/24
RA	4792	.	1	1830127	0	G	A	bias_e_value=2067710	bias_p_value=0.983349	consensus_score=148.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.823153	major_base=A	major_cov=30/24	major_frequency=9.818e-01	minor_base=G	minor_cov=1/0	new_cov=30/24	polymorphism_frequency=9.818e-01	polymorphism_score=-5.2	prediction=consensus	ref_cov=1/0	total_cov=31/24
RA	4793	.	1	1830128	0	C	T	bias_e_value=2102720	bias_p_value=1	consensus_score=149.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=30/24	major_frequency=9.818e-01	minor_base=C	minor_cov=1/0	new_cov=30/24	polymorphism_frequency=9.818e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=31/24
RA	4794	.	1	1830139	0	C	T	consensus_score=164.7	frequency=1	major_base=T	major_cov=34/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/29
RA	4795	.	1	1830147	0	G	C	consensus_score=172.7	frequency=1	major_base=C	major_cov=35/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/27
RA	4796	.	1	1830160	0	A	G	consensus_score=164.9	frequency=1	major_base=G	major_cov=32/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/27
RA	4797	.	1	1830163	0	A	G	consensus_score=165.0	frequency=1	major_base=G	major_cov=32/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/27
RA	4798	.	1	1830176	0	A	G	bias_e_value=1719720	bias_p_value=0.817854	consensus_score=166.0	fisher_strand_p_value=0.47619	frequency=1	ks_quality_p_value=0.967761	major_base=G	major_cov=33/29	major_frequency=9.841e-01	minor_base=A	minor_cov=0/1	new_cov=33/29	polymorphism_frequency=9.841e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=33/30
RA	4799	.	1	1830182	0	C	T	consensus_score=177.4	frequency=1	major_base=T	major_cov=32/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/30
RA	4800	.	1	1830225	0	A	T	consensus_score=152.2	frequency=1	major_base=T	major_cov=25/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/29
RA	4801	.	1	1830226	0	A	G	consensus_score=154.9	frequency=1	major_base=G	major_cov=25/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/29
RA	4802	.	1	1830229	0	G	A	consensus_score=145.8	frequency=1	major_base=A	major_cov=25/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/29
RA	4803	.	1	1830256	0	G	A	consensus_score=159.7	frequency=1	major_base=A	major_cov=24/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/33
RA	4804	.	1	1830287	0	C	G	consensus_score=175.3	frequency=1	major_base=G	major_cov=26/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/36
RA	4805	.	1	1830369	0	C	T	consensus_score=183.7	frequency=1	major_base=T	major_cov=30/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/35
RA	4806	.	1	1830435	0	T	G	consensus_score=171.5	frequency=1	major_base=G	major_cov=30/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/30
RA	4807	.	1	1830473	0	T	C	consensus_score=171.2	frequency=1	major_base=C	major_cov=28/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/30
RA	4808	.	1	1830512	0	T	C	consensus_score=197.2	frequency=1	major_base=C	major_cov=31/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/35
RA	4809	.	1	1830539	0	A	G	consensus_score=207.4	frequency=1	major_base=G	major_cov=34/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/35
RA	4810	.	1	1830572	0	C	T	consensus_score=198.0	frequency=1	major_base=T	major_cov=31/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/37
RA	4811	.	1	1830573	0	C	A	consensus_score=195.8	frequency=1	major_base=A	major_cov=31/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/37
RA	4812	.	1	1830621	0	C	T	consensus_score=217.1	frequency=1	major_base=T	major_cov=31/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/45
RA	4813	.	1	1830624	0	T	C	consensus_score=229.6	frequency=1	major_base=C	major_cov=31/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/45
RA	4814	.	1	1830720	0	C	T	consensus_score=227.1	frequency=1	major_base=T	major_cov=35/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/44
RA	4815	.	1	1830741	0	A	G	consensus_score=225.9	frequency=1	major_base=G	major_cov=33/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/42
RA	4816	.	1	1830759	0	A	G	consensus_score=193.0	frequency=1	major_base=G	major_cov=31/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/32
RA	4817	.	1	1830815	0	G	A	consensus_score=158.1	frequency=1	major_base=A	major_cov=33/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/23
RA	4818	.	1	1830819	0	A	T	consensus_score=153.9	frequency=1	major_base=T	major_cov=31/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/23
RA	4819	.	1	1830856	0	G	A	consensus_score=180.8	frequency=1	major_base=A	major_cov=41/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/23
RA	4820	.	1	1830872	0	C	A	consensus_score=171.0	frequency=1	major_base=A	major_cov=39/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/21
RA	4821	.	1	1830912	0	C	A	consensus_score=184.5	frequency=1	major_base=A	major_cov=39/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/22
RA	4822	.	1	1830921	0	G	A	consensus_score=162.6	frequency=1	major_base=A	major_cov=37/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/20
RA	4823	.	1	1831035	0	C	T	consensus_score=162.9	frequency=1	major_base=T	major_cov=33/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/25
RA	4824	.	1	1831041	0	C	T	consensus_score=153.6	frequency=1	major_base=T	major_cov=31/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/24
RA	4825	.	1	1831043	0	C	A	consensus_score=157.1	frequency=1	major_base=A	major_cov=31/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/24
RA	4826	.	1	1831101	0	G	A	consensus_score=181.6	frequency=1	major_base=A	major_cov=30/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/32
RA	4827	.	1	1831203	0	A	G	consensus_score=201.4	frequency=1	major_base=G	major_cov=35/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/35
RA	4828	.	1	1831209	0	A	T	consensus_score=187.2	frequency=1	major_base=T	major_cov=33/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/33
RA	4829	.	1	1831211	0	T	C	consensus_score=190.5	frequency=1	major_base=C	major_cov=33/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/33
RA	4830	.	1	1831229	0	T	C	consensus_score=211.6	frequency=1	major_base=C	major_cov=35/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/37
RA	4831	.	1	1831267	0	A	G	consensus_score=234.5	frequency=1	major_base=G	major_cov=41/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/37
RA	4832	.	1	1831287	0	T	C	consensus_score=221.8	frequency=1	major_base=C	major_cov=40/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/37
RA	4833	.	1	1831322	0	A	G	consensus_score=211.1	frequency=1	major_base=G	major_cov=44/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/30
RA	4834	.	1	1831344	0	A	G	consensus_score=226.2	frequency=1	major_base=G	major_cov=44/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/35
RA	4835	.	1	1831354	0	A	G	consensus_score=213.3	frequency=1	major_base=G	major_cov=39/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/32
RA	4836	.	1	1831356	0	G	C	consensus_score=204.0	frequency=1	major_base=C	major_cov=39/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/32
RA	4837	.	1	1831406	0	A	C	consensus_score=235.6	frequency=1	major_base=C	major_cov=46/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/37
RA	4838	.	1	1831419	0	C	T	bias_e_value=1646720	bias_p_value=0.783137	consensus_score=255.0	fisher_strand_p_value=0.418605	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=50/35	major_frequency=9.884e-01	minor_base=C	minor_cov=0/1	new_cov=50/35	polymorphism_frequency=9.884e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=50/36
RA	4839	.	1	1831448	0	G	A	consensus_score=232.7	frequency=1	major_base=A	major_cov=48/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/33
RA	4840	.	1	1831479	0	C	T	consensus_score=223.6	frequency=1	major_base=T	major_cov=48/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/30
RA	4841	.	1	1831494	0	A	G	consensus_score=199.4	frequency=1	major_base=G	major_cov=40/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/30
RA	4842	.	1	1831497	0	A	G	bias_e_value=2102720	bias_p_value=1	consensus_score=198.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=39/30	major_frequency=9.857e-01	minor_base=C	minor_cov=1/0	new_cov=39/30	polymorphism_frequency=9.857e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/30
RA	4843	.	1	1831503	0	A	T	consensus_score=209.8	frequency=1	major_base=T	major_cov=42/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/31
RA	4844	.	1	1831575	0	G	A	consensus_score=178.0	frequency=1	major_base=A	major_cov=39/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/24
RA	4845	.	1	1831599	0	G	A	consensus_score=181.3	frequency=1	major_base=A	major_cov=39/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/25
RA	4846	.	1	1831602	0	G	A	consensus_score=191.0	frequency=1	major_base=A	major_cov=39/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/25
RA	4847	.	1	1831641	0	G	A	consensus_score=194.0	frequency=1	major_base=A	major_cov=34/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/33
RA	4848	.	1	1831680	0	C	T	consensus_score=202.2	frequency=1	major_base=T	major_cov=34/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/36
RA	4849	.	1	1831684	0	T	C	consensus_score=211.1	frequency=1	major_base=C	major_cov=34/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/36
RA	4850	.	1	1831695	0	G	A	consensus_score=212.8	frequency=1	major_base=A	major_cov=34/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/39
RA	4851	.	1	1831709	0	A	G	consensus_score=210.8	frequency=1	major_base=G	major_cov=32/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/40
RA	4852	.	1	1831746	0	A	G	consensus_score=189.7	frequency=1	major_base=G	major_cov=24/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/41
RA	4853	.	1	1831749	0	A	G	consensus_score=192.4	frequency=1	major_base=G	major_cov=24/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/41
RA	4854	.	1	1831752	0	G	A	consensus_score=190.1	frequency=1	major_base=A	major_cov=24/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/41
RA	4855	.	1	1831776	0	A	G	consensus_score=187.5	frequency=1	major_base=G	major_cov=18/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/46
RA	4856	.	1	1831788	0	C	T	consensus_score=187.2	frequency=1	major_base=T	major_cov=20/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/45
RA	4857	.	1	1831816	0	C	T	consensus_score=171.9	frequency=1	major_base=T	major_cov=18/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/43
RA	4858	.	1	1831851	0	T	C	consensus_score=179.5	frequency=1	major_base=C	major_cov=20/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/40
RA	4859	.	1	1831852	0	C	T	consensus_score=169.8	frequency=1	major_base=T	major_cov=20/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/40
RA	4860	.	1	1831857	0	T	C	consensus_score=187.1	frequency=1	major_base=C	major_cov=21/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/42
RA	4861	.	1	1831898	0	A	T	consensus_score=217.6	frequency=1	major_base=T	major_cov=26/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/46
RA	4862	.	1	1831901	0	A	C	consensus_score=206.0	frequency=1	major_base=C	major_cov=26/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/46
RA	4863	.	1	1831904	0	C	A	consensus_score=215.1	frequency=1	major_base=A	major_cov=26/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/46
RA	4864	.	1	1831952	0	C	T	consensus_score=199.2	frequency=1	major_base=T	major_cov=30/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/39
RA	4865	.	1	1831963	0	T	C	consensus_score=188.7	frequency=1	major_base=C	major_cov=30/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/34
RA	4866	.	1	1831983	0	G	A	consensus_score=184.2	frequency=1	major_base=A	major_cov=32/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/32
RA	4867	.	1	1831986	0	G	A	consensus_score=185.7	frequency=1	major_base=A	major_cov=32/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/32
RA	4868	.	1	1831995	0	C	T	consensus_score=193.1	frequency=1	major_base=T	major_cov=32/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/35
RA	4869	.	1	1832019	0	T	C	bias_e_value=2080240	bias_p_value=0.989308	consensus_score=188.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.857376	major_base=C	major_cov=34/34	major_frequency=9.855e-01	minor_base=.	minor_cov=1/0	new_cov=34/34	polymorphism_frequency=9.855e-01	polymorphism_score=-2.8	prediction=consensus	ref_cov=0/0	total_cov=35/34
RA	4870	.	1	1832025	0	T	C	consensus_score=194.4	frequency=1	major_base=C	major_cov=34/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/34
RA	4871	.	1	1832034	0	C	T	consensus_score=191.3	frequency=1	major_base=T	major_cov=34/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/33
RA	4872	.	1	1832037	0	A	G	consensus_score=195.4	frequency=1	major_base=G	major_cov=34/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/33
RA	4873	.	1	1832064	0	A	G	consensus_score=214.6	frequency=1	major_base=G	major_cov=36/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/36
RA	4874	.	1	1832067	0	C	T	consensus_score=205.8	frequency=1	major_base=T	major_cov=36/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/36
RA	4875	.	1	1832088	0	G	A	consensus_score=205.2	frequency=1	major_base=A	major_cov=34/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/40
RA	4876	.	1	1832100	0	A	G	consensus_score=210.9	frequency=1	major_base=G	major_cov=34/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/37
RA	4877	.	1	1832106	0	T	C	consensus_score=200.9	frequency=1	major_base=C	major_cov=35/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/33
RA	4878	.	1	1832124	0	G	C	bias_e_value=2102720	bias_p_value=1	consensus_score=177.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=30/32	major_frequency=9.841e-01	minor_base=T	minor_cov=0/1	new_cov=30/32	polymorphism_frequency=9.841e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/33
RA	4879	.	1	1832127	0	T	C	consensus_score=179.5	frequency=1	major_base=C	major_cov=30/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/33
RA	4880	.	1	1832154	0	C	T	consensus_score=213.1	frequency=1	major_base=T	major_cov=40/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/31
RA	4881	.	1	1832157	0	A	G	consensus_score=203.2	frequency=1	major_base=G	major_cov=40/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/31
RA	4882	.	1	1832205	0	A	G	consensus_score=248.6	frequency=1	major_base=G	major_cov=45/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/42
RA	4883	.	1	1832286	0	G	T	consensus_score=237.8	frequency=1	major_base=T	major_cov=47/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/35
RA	4884	.	1	1832343	0	A	G	consensus_score=195.0	frequency=1	major_base=G	major_cov=36/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/31
RA	4885	.	1	1832415	0	C	T	consensus_score=185.9	frequency=1	major_base=T	major_cov=25/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/39
RA	4886	.	1	1832418	0	G	A	consensus_score=185.2	frequency=1	major_base=A	major_cov=25/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/39
RA	4887	.	1	1832430	0	G	C	consensus_score=182.5	frequency=1	major_base=C	major_cov=26/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/37
RA	4888	.	1	1832433	0	C	T	consensus_score=182.7	frequency=1	major_base=T	major_cov=26/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/37
RA	4889	.	1	1832487	0	A	.	consensus_score=296.3	frequency=1	major_base=.	major_cov=28/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/42
RA	4890	.	1	1832490	0	A	G	consensus_score=205.2	frequency=1	major_base=G	major_cov=28/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/42
RA	4891	.	1	1832493	1	.	T	bias_e_value=2102720	bias_p_value=0.999999	consensus_score=197.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998345	major_base=T	major_cov=28/41	major_frequency=9.857e-01	minor_base=.	minor_cov=0/1	new_cov=28/41	polymorphism_frequency=9.857e-01	polymorphism_score=-3.0	prediction=consensus	ref_cov=0/1	total_cov=28/42
RA	4892	.	1	1832501	0	G	A	consensus_score=201.0	frequency=1	major_base=A	major_cov=27/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/43
RA	4893	.	1	1832508	0	C	T	consensus_score=197.2	frequency=1	major_base=T	major_cov=27/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/43
RA	4894	.	1	1832565	0	A	G	consensus_score=252.1	frequency=1	major_base=G	major_cov=31/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/52
RA	4895	.	1	1832606	0	T	A	consensus_score=237.4	frequency=1	major_base=A	major_cov=35/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/51
RA	4896	.	1	1832610	0	G	A	consensus_score=242.1	frequency=1	major_base=A	major_cov=35/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/51
RA	4897	.	1	1832616	0	T	A	bias_e_value=984909	bias_p_value=0.468397	consensus_score=222.1	fisher_strand_p_value=0.168404	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=34/51	major_frequency=9.770e-01	minor_base=G	minor_cov=2/0	new_cov=34/51	polymorphism_frequency=9.770e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/51
RA	4898	.	1	1832634	0	A	G	consensus_score=242.5	frequency=1	major_base=G	major_cov=37/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/48
RA	4899	.	1	1832643	0	C	T	consensus_score=236.5	frequency=1	major_base=T	major_cov=37/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/45
RA	4900	.	1	1832665	0	A	G	consensus_score=211.2	frequency=1	major_base=G	major_cov=34/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/40
RA	4901	.	1	1832682	0	G	A	consensus_score=198.7	frequency=1	major_base=A	major_cov=31/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/39
RA	4902	.	1	1832688	0	G	A	consensus_score=201.9	frequency=1	major_base=A	major_cov=32/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/40
RA	4903	.	1	1835662	1	.	T	consensus_score=110.5	frequency=1	major_base=T	major_cov=15/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/23
RA	4904	.	1	1836127	0	A	G	consensus_score=221.8	frequency=1	major_base=G	major_cov=39/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/33
RA	4905	.	1	1837167	0	T	C	consensus_score=171.1	frequency=1	major_base=C	major_cov=26/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/34
RA	4906	.	1	1837815	0	G	A	consensus_score=248.9	frequency=1	major_base=A	major_cov=28/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/56
RA	4907	.	1	1838466	0	G	A	bias_e_value=1399030	bias_p_value=0.665345	consensus_score=240.0	fisher_strand_p_value=0.392857	frequency=1	ks_quality_p_value=0.77246	major_base=A	major_cov=32/51	major_frequency=9.881e-01	minor_base=G	minor_cov=1/0	new_cov=32/51	polymorphism_frequency=9.881e-01	polymorphism_score=-5.2	prediction=consensus	ref_cov=1/0	total_cov=33/51
RA	4908	.	1	1841525	0	T	A	consensus_score=215.9	frequency=1	major_base=A	major_cov=36/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/39
RA	4909	.	1	1841714	0	C	T	consensus_score=235.7	frequency=1	major_base=T	major_cov=47/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/34
RA	4910	.	1	1844157	0	T	C	consensus_score=191.2	frequency=1	major_base=C	major_cov=36/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/31
RA	4911	.	1	1845331	0	C	T	consensus_score=159.1	frequency=1	major_base=T	major_cov=26/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/30
RA	4912	.	1	1847116	0	T	C	consensus_score=233.8	frequency=1	major_base=C	major_cov=40/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/41
RA	4913	.	1	1850791	0	G	A	consensus_score=235.2	frequency=1	major_base=A	major_cov=32/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/49
RA	4914	.	1	1851128	0	C	A	consensus_score=184.4	frequency=1	major_base=A	major_cov=25/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/39
RA	4915	.	1	1853734	0	T	C	consensus_score=294.8	frequency=1	major_base=C	major_cov=44/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/57
RA	4916	.	1	1853784	0	T	C	consensus_score=267.1	frequency=1	major_base=C	major_cov=40/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/52
RA	4917	.	1	1855258	0	A	G	consensus_score=191.1	frequency=1	major_base=G	major_cov=33/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/34
RA	4918	.	1	1859504	0	T	G	consensus_score=225.5	frequency=1	major_base=G	major_cov=32/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/44
RA	4919	.	1	1859651	0	A	G	consensus_score=279.1	frequency=1	major_base=G	major_cov=38/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/53
RA	4920	.	1	1859717	0	A	G	consensus_score=253.0	frequency=1	major_base=G	major_cov=45/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/43
RA	4921	.	1	1860590	0	A	G	consensus_score=220.2	frequency=1	major_base=G	major_cov=30/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/43
RA	4922	.	1	1861181	0	A	G	consensus_score=225.8	frequency=1	major_base=G	major_cov=49/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/29
RA	4923	.	1	1863469	0	A	C	bias_e_value=1254430	bias_p_value=0.596574	consensus_score=120.0	fisher_strand_p_value=0.25	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=33/10	major_frequency=9.773e-01	minor_base=.	minor_cov=0/1	new_cov=33/10	polymorphism_frequency=9.773e-01	polymorphism_score=-3.8	prediction=consensus	ref_cov=0/0	total_cov=33/11
RA	4924	.	1	1864954	0	C	T	bias_e_value=2102720	bias_p_value=1	consensus_score=234.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999699	major_base=T	major_cov=48/33	major_frequency=9.878e-01	minor_base=C	minor_cov=1/0	new_cov=48/33	polymorphism_frequency=9.878e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=49/33
RA	4925	.	1	1865616	0	A	G	consensus_score=234.1	frequency=1	major_base=G	major_cov=39/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/37
RA	4926	.	1	1866450	0	A	G	consensus_score=208.2	frequency=1	major_base=G	major_cov=43/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/25
RA	4927	.	1	1867327	0	A	G	bias_e_value=1410870	bias_p_value=0.670973	consensus_score=262.4	fisher_strand_p_value=0.488636	frequency=1	ks_quality_p_value=0.630769	major_base=G	major_cov=45/42	major_frequency=9.886e-01	minor_base=A	minor_cov=0/1	new_cov=45/42	polymorphism_frequency=9.886e-01	polymorphism_score=-5.0	prediction=consensus	ref_cov=0/1	total_cov=45/43
RA	4928	.	1	1868324	0	A	G	consensus_score=236.7	frequency=1	major_base=G	major_cov=45/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/38
RA	4929	.	1	1869046	0	A	G	consensus_score=316.2	frequency=1	major_base=G	major_cov=54/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/50
RA	4930	.	1	1869462	0	G	A	consensus_score=228.2	frequency=1	major_base=A	major_cov=44/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/35
RA	4931	.	1	1871071	0	T	C	consensus_score=287.7	frequency=1	major_base=C	major_cov=53/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/45
RA	4932	.	1	1871173	0	C	A	bias_e_value=0.000199477	bias_p_value=9.48661e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=176.7	fisher_strand_p_value=3.4637e-12	frequency=2.778e-01	ks_quality_p_value=1	major_base=C	major_cov=15/50	major_frequency=7.222e-01	minor_base=A	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.778e-01	polymorphism_score=20.1	prediction=polymorphism	ref_cov=15/50	total_cov=40/50
RA	4933	.	1	1873674	0	A	G	consensus_score=214.4	frequency=1	major_base=G	major_cov=42/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/34
RA	4934	.	1	1873964	0	A	T	consensus_score=254.7	frequency=1	major_base=T	major_cov=37/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/52
RA	4935	.	1	1875873	0	C	T	consensus_score=185.8	frequency=1	major_base=T	major_cov=38/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/27
RA	4936	.	1	1876124	0	C	G	bias_e_value=0.000279333	bias_p_value=1.32844e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=126.7	fisher_strand_p_value=4.91301e-12	frequency=2.727e-01	ks_quality_p_value=1	major_base=C	major_cov=5/43	major_frequency=7.273e-01	minor_base=G	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.727e-01	polymorphism_score=12.0	prediction=polymorphism	ref_cov=5/43	total_cov=23/43
RA	4937	.	1	1880290	0	A	G	consensus_score=91.6	frequency=1	major_base=G	major_cov=12/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/20
RA	4938	.	1	1880430	0	G	A	consensus_score=88.6	frequency=1	major_base=A	major_cov=14/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/18
RA	4939	.	1	1880661	0	A	G	consensus_score=176.6	frequency=1	major_base=G	major_cov=39/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/28
RA	4940	.	1	1880770	0	T	A	bias_e_value=1.34893	bias_p_value=6.41514e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=156.1	fisher_strand_p_value=3.53284e-08	frequency=2.222e-01	ks_quality_p_value=1	major_base=T	major_cov=42/14	major_frequency=7.778e-01	minor_base=A	minor_cov=0/16	new_cov=0/16	polymorphism_frequency=2.222e-01	polymorphism_score=10.7	prediction=polymorphism	ref_cov=42/14	total_cov=42/30
RA	4941	.	1	1881054	0	C	T	consensus_score=245.2	frequency=1	major_base=T	major_cov=45/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/40
RA	4942	.	1	1882807	0	G	A	consensus_score=119.1	frequency=1	major_base=A	major_cov=17/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/24
RA	4943	.	1	1883091	0	A	G	consensus_score=125.2	frequency=1	major_base=G	major_cov=23/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/21
RA	4944	.	1	1888585	0	G	A	consensus_score=227.9	frequency=1	major_base=A	major_cov=28/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/51
RA	4945	.	1	1889017	0	A	G	bias_e_value=1535370	bias_p_value=0.730181	consensus_score=317.2	fisher_strand_p_value=0.461538	frequency=1	ks_quality_p_value=0.785078	major_base=G	major_cov=56/47	major_frequency=9.904e-01	minor_base=.	minor_cov=0/1	new_cov=56/47	polymorphism_frequency=9.904e-01	polymorphism_score=-3.2	prediction=consensus	ref_cov=0/0	total_cov=56/48
RA	4946	.	1	1889473	0	G	A	consensus_score=285.5	frequency=1	major_base=A	major_cov=55/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/42
RA	4947	.	1	1889722	0	T	C	consensus_score=179.6	frequency=1	major_base=C	major_cov=28/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/32
RA	4948	.	1	1890472	0	A	G	consensus_score=264.6	frequency=1	major_base=G	major_cov=45/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/44
RA	4949	.	1	1891008	1	.	T	bias_e_value=1851660	bias_p_value=0.880604	consensus_score=216.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.553013	major_base=T	major_cov=38/35	major_frequency=9.865e-01	minor_base=.	minor_cov=1/0	new_cov=38/35	polymorphism_frequency=9.865e-01	polymorphism_score=-3.4	prediction=consensus	ref_cov=1/0	total_cov=39/35
RA	4950	.	1	1891782	0	A	G	consensus_score=216.7	frequency=1	major_base=G	major_cov=42/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/29
RA	4951	.	1	1892239	0	T	A	consensus_score=14.8	deleted=1	frequency=1	major_base=A	major_cov=3/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/4
RA	4952	.	1	1896704	0	A	G	consensus_score=203.5	frequency=1	major_base=G	major_cov=28/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/41
RA	4953	.	1	1897821	0	C	A	consensus_score=234.0	frequency=1	major_base=A	major_cov=34/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/46
RA	4954	.	1	1898239	0	C	T	consensus_score=154.2	frequency=1	major_base=T	major_cov=30/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/24
RA	4955	.	1	1899179	0	C	A	consensus_score=195.8	frequency=1	major_base=A	major_cov=38/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/28
RA	4956	.	1	1900643	0	G	A	consensus_score=179.7	frequency=1	major_base=A	major_cov=36/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/25
RA	4957	.	1	1901122	0	T	C	consensus_score=197.0	frequency=1	major_base=C	major_cov=45/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/22
RA	4958	.	1	1904614	0	G	A	consensus_score=213.5	frequency=1	major_base=A	major_cov=34/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/40
RA	4959	.	1	1904786	0	G	A	consensus_score=209.6	frequency=1	major_base=A	major_cov=45/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/29
RA	4960	.	1	1905221	0	A	C	consensus_score=265.1	frequency=1	major_base=C	major_cov=44/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/43
RA	4961	.	1	1906057	0	T	C	consensus_score=219.3	frequency=1	major_base=C	major_cov=29/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/47
RA	4962	.	1	1906158	0	T	C	consensus_score=244.5	frequency=1	major_base=C	major_cov=44/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/40
RA	4963	.	1	1906283	0	C	T	consensus_score=216.5	frequency=1	major_base=T	major_cov=42/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/32
RA	4964	.	1	1907384	0	G	A	consensus_score=248.1	frequency=1	major_base=A	major_cov=48/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/37
RA	4965	.	1	1908383	0	A	G	consensus_score=234.1	frequency=1	major_base=G	major_cov=40/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/38
RA	4966	.	1	1908466	0	A	G	consensus_score=234.3	frequency=1	major_base=G	major_cov=42/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/36
RA	4967	.	1	1909602	0	G	C	consensus_score=211.9	frequency=1	major_base=C	major_cov=25/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/46
RA	4968	.	1	1909791	0	A	G	consensus_score=168.7	frequency=1	major_base=G	major_cov=31/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/27
RA	4969	.	1	1910170	0	G	A	consensus_score=281.8	frequency=1	major_base=A	major_cov=48/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/49
RA	4970	.	1	1911998	0	C	T	consensus_score=246.5	frequency=1	major_base=T	major_cov=40/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/47
RA	4971	.	1	1914320	0	A	G	consensus_score=181.9	frequency=1	major_base=G	major_cov=35/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/29
RA	4972	.	1	1917892	0	C	A	bias_e_value=0.297492	bias_p_value=1.4148e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=149.6	fisher_strand_p_value=7.1619e-09	frequency=2.561e-01	ks_quality_p_value=1	major_base=C	major_cov=42/19	major_frequency=7.439e-01	minor_base=A	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=2.561e-01	polymorphism_score=16.8	prediction=polymorphism	ref_cov=42/19	total_cov=42/40
RA	4973	.	1	1917908	0	C	A	bias_e_value=0.0552143	bias_p_value=2.62585e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=86.6	fisher_strand_p_value=1.21994e-09	frequency=3.768e-01	ks_quality_p_value=1	major_base=C	major_cov=30/13	major_frequency=6.232e-01	minor_base=A	minor_cov=0/26	new_cov=0/26	polymorphism_frequency=3.768e-01	polymorphism_score=27.0	prediction=polymorphism	ref_cov=30/13	total_cov=30/39
RA	4974	.	1	1918664	0	G	A	consensus_score=244.5	frequency=1	major_base=A	major_cov=42/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/45
RA	4975	.	1	1921386	0	T	C	consensus_score=205.4	frequency=1	major_base=C	major_cov=31/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/40
RA	4976	.	1	1921527	0	T	C	consensus_score=295.8	frequency=1	major_base=C	major_cov=36/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/61
RA	4977	.	1	1922183	0	T	C	consensus_score=267.5	frequency=1	major_base=C	major_cov=39/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/48
RA	4978	.	1	1922747	0	T	C	consensus_score=264.6	frequency=1	major_base=C	major_cov=44/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/45
RA	4979	.	1	1924381	0	A	G	consensus_score=299.6	frequency=1	major_base=G	major_cov=53/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/51
RA	4980	.	1	1924948	0	T	G	consensus_score=361.8	frequency=1	major_base=G	major_cov=57/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/65
RA	4981	.	1	1926390	0	T	G	consensus_score=317.5	frequency=1	major_base=G	major_cov=52/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/58
RA	4982	.	1	1927744	0	T	C	consensus_score=270.1	frequency=1	major_base=C	major_cov=44/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/49
RA	4983	.	1	1928669	0	T	C	consensus_score=160.8	frequency=1	major_base=C	major_cov=30/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/26
RA	4984	.	1	1928808	0	G	A	consensus_score=287.1	frequency=1	major_base=A	major_cov=54/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/45
RA	4985	.	1	1928985	0	T	C	consensus_score=258.6	frequency=1	major_base=C	major_cov=38/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/48
RA	4986	.	1	1929180	0	T	G	consensus_score=169.6	frequency=1	major_base=G	major_cov=14/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/43
RA	4987	.	1	1929450	0	T	C	consensus_score=227.4	frequency=1	major_base=C	major_cov=37/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/40
RA	4988	.	1	1930795	0	C	T	consensus_score=219.6	frequency=1	major_base=T	major_cov=46/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/31
RA	4989	.	1	1931570	0	C	T	consensus_score=313.3	frequency=1	major_base=T	major_cov=51/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/54
RA	4990	.	1	1931725	0	G	T	consensus_score=276.5	frequency=1	major_base=T	major_cov=40/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/52
RA	4991	.	1	1934664	0	A	G	consensus_score=199.1	frequency=1	major_base=G	major_cov=45/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/25
RA	4992	.	1	1935667	0	C	A	consensus_score=202.5	frequency=1	major_base=A	major_cov=35/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/36
RA	4993	.	1	1936358	0	T	A	bias_e_value=32.1173	bias_p_value=1.52742e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=145.9	fisher_strand_p_value=1.03324e-06	frequency=2.568e-01	ks_quality_p_value=1	major_base=T	major_cov=34/21	major_frequency=7.432e-01	minor_base=A	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=2.568e-01	polymorphism_score=12.6	prediction=polymorphism	ref_cov=34/21	total_cov=34/40
RA	4994	.	1	1938787	0	C	A	consensus_score=227.0	frequency=1	major_base=A	major_cov=36/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/41
RA	4995	.	1	1939063	0	G	A	bias_e_value=0.000111613	bias_p_value=5.30801e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=158.7	fisher_strand_p_value=1.89632e-12	frequency=2.547e-01	ks_quality_p_value=1	major_base=G	major_cov=58/21	major_frequency=7.453e-01	minor_base=A	minor_cov=0/27	new_cov=0/27	polymorphism_frequency=2.547e-01	polymorphism_score=17.8	prediction=polymorphism	ref_cov=58/21	total_cov=58/48
RA	4996	.	1	1939068	0	A	C	bias_e_value=3.33878e-07	bias_p_value=1.58784e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=186.5	fisher_strand_p_value=4.67045e-15	frequency=3.365e-01	ks_quality_p_value=1	major_base=A	major_cov=55/14	major_frequency=6.635e-01	minor_base=C	minor_cov=1/34	new_cov=1/34	polymorphism_frequency=3.365e-01	polymorphism_score=17.6	prediction=polymorphism	ref_cov=55/14	total_cov=56/48
RA	4997	.	1	1939088	0	A	C	bias_e_value=9.41339e-12	bias_p_value=4.47677e-18	consensus_reject=FREQUENCY_CUTOFF	consensus_score=166.0	fisher_strand_p_value=1.00042e-19	frequency=3.737e-01	ks_quality_p_value=1	major_base=A	major_cov=54/8	major_frequency=6.263e-01	minor_base=C	minor_cov=0/37	new_cov=0/37	polymorphism_frequency=3.737e-01	polymorphism_score=15.5	prediction=polymorphism	ref_cov=54/8	total_cov=54/45
RA	4998	.	1	1942502	0	G	A	consensus_score=234.7	frequency=1	major_base=A	major_cov=39/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/43
RA	4999	.	1	1942814	0	T	C	consensus_score=178.9	frequency=1	major_base=C	major_cov=32/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/31
RA	5000	.	1	1948196	0	T	C	consensus_score=232.3	frequency=1	major_base=C	major_cov=43/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/39
RA	5001	.	1	1951505	0	G	T	consensus_score=315.1	frequency=1	major_base=T	major_cov=46/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/62
RA	5002	.	1	1951908	0	T	C	consensus_score=186.0	frequency=1	major_base=C	major_cov=41/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/22
RA	5003	.	1	1954087	0	G	A	consensus_score=294.0	frequency=1	major_base=A	major_cov=54/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/44
RA	5004	.	1	1954524	0	G	A	consensus_score=214.6	frequency=1	major_base=A	major_cov=44/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/30
RA	5005	.	1	1957363	0	C	T	consensus_score=136.9	frequency=1	major_base=T	major_cov=26/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/23
RA	5006	.	1	1958159	0	C	T	consensus_score=256.3	frequency=1	major_base=T	major_cov=52/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/40
RA	5007	.	1	1958210	0	A	T	consensus_score=149.0	frequency=1	major_base=T	major_cov=34/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/21
RA	5008	.	1	1958212	0	A	G	consensus_score=155.1	frequency=1	major_base=G	major_cov=34/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/21
RA	5009	.	1	1958216	0	C	T	consensus_score=146.5	frequency=1	major_base=T	major_cov=34/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/21
RA	5010	.	1	1958263	0	A	G	consensus_score=93.4	frequency=1	major_base=G	major_cov=19/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/16
RA	5011	.	1	1958266	0	T	C	consensus_score=98.1	frequency=1	major_base=C	major_cov=19/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/16
RA	5012	.	1	1960359	0	A	G	consensus_score=242.1	frequency=1	major_base=G	major_cov=36/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/44
RA	5013	.	1	1960400	0	C	T	bias_e_value=1738880	bias_p_value=0.826965	consensus_score=216.7	fisher_strand_p_value=0.472973	frequency=1	ks_quality_p_value=0.99963	major_base=T	major_cov=39/34	major_frequency=9.865e-01	minor_base=G	minor_cov=0/1	new_cov=39/34	polymorphism_frequency=9.865e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/35
RA	5014	.	1	1984998	0	G	A	consensus_score=239.6	frequency=1	major_base=A	major_cov=31/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/53
RA	5015	.	1	1986868	0	C	T	consensus_score=230.7	frequency=1	major_base=T	major_cov=38/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/42
RA	5016	.	1	1987389	0	C	T	bias_e_value=2102720	bias_p_value=1	consensus_score=244.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=44/40	major_frequency=9.882e-01	minor_base=C	minor_cov=1/0	new_cov=44/40	polymorphism_frequency=9.882e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=45/40
RA	5017	.	1	1991786	0	G	C	consensus_score=323.7	frequency=1	major_base=C	major_cov=57/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/53
RA	5018	.	1	1991991	0	A	C	consensus_score=242.3	frequency=1	major_base=C	major_cov=37/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/46
RA	5019	.	1	1992764	0	T	G	consensus_score=12.9	frequency=1	major_base=G	major_cov=3/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/3
RA	5020	.	1	1995218	0	G	A	consensus_score=217.8	frequency=1	major_base=A	major_cov=36/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/39
RA	5021	.	1	1996171	0	G	A	consensus_score=157.9	frequency=1	major_base=A	major_cov=25/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/30
RA	5022	.	1	1997603	0	T	G	bias_e_value=1.5301e-05	bias_p_value=7.27679e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=137.1	fisher_strand_p_value=2.42163e-13	frequency=3.605e-01	ks_quality_p_value=1	major_base=T	major_cov=13/42	major_frequency=6.395e-01	minor_base=G	minor_cov=31/0	new_cov=31/0	polymorphism_frequency=3.605e-01	polymorphism_score=12.4	prediction=polymorphism	ref_cov=13/42	total_cov=45/42
RA	5023	.	1	1999860	0	A	G	consensus_score=274.3	frequency=1	major_base=G	major_cov=59/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/37
RA	5024	.	1	2002303	0	G	T	consensus_score=281.1	frequency=1	major_base=T	major_cov=48/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/50
RA	5025	.	1	2007477	0	C	T	consensus_score=307.9	frequency=1	major_base=T	major_cov=39/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/67
RA	5026	.	1	2007599	0	T	G	consensus_score=209.4	frequency=1	major_base=G	major_cov=41/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/33
RA	5027	.	1	2007763	0	A	G	consensus_score=329.0	frequency=1	major_base=G	major_cov=73/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=73/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=73/34
RA	5028	.	1	2009130	0	C	T	consensus_score=265.0	frequency=1	major_base=T	major_cov=41/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/49
RA	5029	.	1	2009662	0	C	T	consensus_score=239.2	frequency=1	major_base=T	major_cov=49/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/34
RA	5030	.	1	2011744	0	C	A	consensus_score=301.0	frequency=1	major_base=A	major_cov=59/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/47
RA	5031	.	1	2014027	0	C	A	consensus_score=133.3	frequency=1	major_base=A	major_cov=31/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/14
RA	5032	.	1	2016178	0	A	C	consensus_score=281.9	frequency=1	major_base=C	major_cov=47/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/45
RA	5033	.	1	2017969	0	A	C	consensus_score=272.8	frequency=1	major_base=C	major_cov=49/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/42
RA	5034	.	1	2018366	0	T	G	bias_e_value=4.10073e-10	bias_p_value=1.9502e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=181.0	fisher_strand_p_value=4.77007e-18	frequency=3.458e-01	ks_quality_p_value=1	major_base=T	major_cov=13/57	major_frequency=6.542e-01	minor_base=G	minor_cov=37/0	new_cov=37/0	polymorphism_frequency=3.458e-01	polymorphism_score=22.6	prediction=polymorphism	ref_cov=13/57	total_cov=53/57
RA	5035	.	1	2018590	0	A	C	bias_e_value=27.9049	bias_p_value=1.32709e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=154.9	fisher_strand_p_value=8.88662e-07	frequency=2.286e-01	ks_quality_p_value=1	major_base=A	major_cov=36/18	major_frequency=7.714e-01	minor_base=C	minor_cov=0/16	new_cov=0/16	polymorphism_frequency=2.286e-01	polymorphism_score=11.0	prediction=polymorphism	ref_cov=36/18	total_cov=36/34
RA	5036	.	1	2018619	0	T	C	bias_e_value=0.00556685	bias_p_value=2.64745e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=77.3	fisher_strand_p_value=1.10658e-10	frequency=3.333e-01	ks_quality_p_value=1	major_base=T	major_cov=35/9	major_frequency=6.667e-01	minor_base=C	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=3.333e-01	polymorphism_score=21.9	prediction=polymorphism	ref_cov=35/9	total_cov=35/31
RA	5037	.	1	2018625	0	A	C	bias_e_value=0.0655613	bias_p_value=3.11793e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=126.8	fisher_strand_p_value=1.46078e-09	frequency=2.985e-01	ks_quality_p_value=1	major_base=A	major_cov=36/11	major_frequency=7.015e-01	minor_base=C	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.985e-01	polymorphism_score=11.1	prediction=polymorphism	ref_cov=36/11	total_cov=36/32
RA	5038	.	1	2018629	0	G	T	bias_e_value=1.79112	bias_p_value=8.51809e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=114.2	fisher_strand_p_value=4.7698e-08	frequency=2.581e-01	ks_quality_p_value=1	major_base=G	major_cov=35/11	major_frequency=7.419e-01	minor_base=T	minor_cov=0/16	new_cov=0/16	polymorphism_frequency=2.581e-01	polymorphism_score=12.2	prediction=polymorphism	ref_cov=35/11	total_cov=35/27
RA	5039	.	1	2018639	0	C	A	bias_e_value=0.0154615	bias_p_value=7.35309e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=106.4	fisher_strand_p_value=3.21694e-10	frequency=3.167e-01	ks_quality_p_value=1	major_base=C	major_cov=34/7	major_frequency=6.833e-01	minor_base=A	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=3.167e-01	polymorphism_score=12.7	prediction=polymorphism	ref_cov=34/7	total_cov=34/26
RA	5040	.	1	2018661	0	G	C	bias_e_value=0.0994349	bias_p_value=4.72887e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=112.8	fisher_strand_p_value=2.26185e-09	frequency=2.836e-01	ks_quality_p_value=1	major_base=G	major_cov=37/11	major_frequency=7.164e-01	minor_base=C	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=2.836e-01	polymorphism_score=10.3	prediction=polymorphism	ref_cov=37/11	total_cov=37/30
RA	5041	.	1	2024922	0	T	C	bias_e_value=1753250	bias_p_value=0.833803	consensus_score=300.1	fisher_strand_p_value=0.49	frequency=1	ks_quality_p_value=0.98377	major_base=C	major_cov=51/48	major_frequency=9.900e-01	minor_base=T	minor_cov=0/1	new_cov=51/48	polymorphism_frequency=9.900e-01	polymorphism_score=-5.1	prediction=consensus	ref_cov=0/1	total_cov=51/49
RA	5042	.	1	2025413	0	C	T	consensus_score=207.9	frequency=1	major_base=T	major_cov=36/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/36
RA	5043	.	1	2025580	0	C	A	consensus_score=351.9	frequency=1	major_base=A	major_cov=64/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/55
RA	5044	.	1	2026831	0	A	G	consensus_score=250.3	frequency=1	major_base=G	major_cov=56/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/26
RA	5045	.	1	2028252	0	T	C	consensus_score=233.5	frequency=1	major_base=C	major_cov=47/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/35
RA	5046	.	1	2028787	0	C	A	bias_e_value=8.44721e-08	bias_p_value=4.01728e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=187.0	fisher_strand_p_value=1.13442e-15	frequency=3.131e-01	ks_quality_p_value=1	major_base=C	major_cov=55/13	major_frequency=6.869e-01	minor_base=A	minor_cov=0/31	new_cov=0/31	polymorphism_frequency=3.131e-01	polymorphism_score=30.3	prediction=polymorphism	ref_cov=55/13	total_cov=55/44
RA	5047	.	1	2028798	0	T	C	bias_e_value=4.17863e-05	bias_p_value=1.98725e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=177.7	fisher_strand_p_value=6.85039e-13	frequency=2.667e-01	ks_quality_p_value=1	major_base=T	major_cov=57/20	major_frequency=7.333e-01	minor_base=C	minor_cov=0/28	new_cov=0/28	polymorphism_frequency=2.667e-01	polymorphism_score=12.1	prediction=polymorphism	ref_cov=57/20	total_cov=57/48
RA	5048	.	1	2028828	0	G	A	bias_e_value=1.20831e-10	bias_p_value=5.74641e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=171.4	fisher_strand_p_value=1.36377e-18	frequency=3.091e-01	ks_quality_p_value=1	major_base=G	major_cov=64/12	major_frequency=6.909e-01	minor_base=A	minor_cov=0/34	new_cov=0/34	polymorphism_frequency=3.091e-01	polymorphism_score=24.6	prediction=polymorphism	ref_cov=64/12	total_cov=64/46
RA	5049	.	1	2028839	0	G	T	bias_e_value=3.40475e-06	bias_p_value=1.61921e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=237.0	fisher_strand_p_value=5.12372e-14	frequency=2.586e-01	ks_quality_p_value=1	major_base=G	major_cov=64/22	major_frequency=7.414e-01	minor_base=T	minor_cov=0/30	new_cov=0/30	polymorphism_frequency=2.586e-01	polymorphism_score=23.3	prediction=polymorphism	ref_cov=64/22	total_cov=64/52
RA	5050	.	1	2028849	0	G	A	bias_e_value=1.05691e-06	bias_p_value=5.02638e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=175.4	fisher_strand_p_value=1.53198e-14	frequency=2.435e-01	ks_quality_p_value=1	major_base=G	major_cov=68/19	major_frequency=7.565e-01	minor_base=A	minor_cov=0/28	new_cov=0/28	polymorphism_frequency=2.435e-01	polymorphism_score=17.9	prediction=polymorphism	ref_cov=68/19	total_cov=68/52
RA	5051	.	1	2028852	0	A	C	bias_e_value=3.77009e-07	bias_p_value=1.79296e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=232.2	fisher_strand_p_value=5.29329e-15	frequency=2.672e-01	ks_quality_p_value=1	major_base=A	major_cov=65/20	major_frequency=7.328e-01	minor_base=C	minor_cov=0/31	new_cov=0/31	polymorphism_frequency=2.672e-01	polymorphism_score=17.4	prediction=polymorphism	ref_cov=65/20	total_cov=65/52
RA	5052	.	1	2031735	0	G	A	bias_e_value=2102720	bias_p_value=1	consensus_score=344.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999411	major_base=A	major_cov=58/58	major_frequency=9.915e-01	minor_base=G	minor_cov=0/1	new_cov=58/58	polymorphism_frequency=9.915e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=58/59
RA	5053	.	1	2033181	0	C	T	consensus_score=300.5	frequency=1	major_base=T	major_cov=68/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=68/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/36
RA	5054	.	1	2034128	0	C	G	consensus_score=325.8	frequency=1	major_base=G	major_cov=56/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/62
RA	5055	.	1	2034632	0	C	T	consensus_score=392.9	frequency=1	major_base=T	major_cov=67/70	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=67/70	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/70
RA	5056	.	1	2034758	0	T	C	consensus_score=387.1	frequency=1	major_base=C	major_cov=65/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/61
RA	5057	.	1	2036300	0	A	G	bias_e_value=1285620	bias_p_value=0.611407	consensus_score=439.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.260868	major_base=G	major_cov=77/75	major_frequency=9.935e-01	minor_base=A	minor_cov=1/0	new_cov=77/75	polymorphism_frequency=9.935e-01	polymorphism_score=-5.6	prediction=consensus	ref_cov=1/0	total_cov=78/75
RA	5058	.	1	2038630	0	A	G	consensus_score=342.8	frequency=1	major_base=G	major_cov=59/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/60
RA	5059	.	1	2040993	0	C	T	consensus_score=363.0	frequency=1	major_base=T	major_cov=63/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/63
RA	5060	.	1	2041048	0	G	T	consensus_score=341.6	frequency=1	major_base=T	major_cov=50/68	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/68	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/68
RA	5061	.	1	2041617	0	C	T	consensus_score=318.8	frequency=1	major_base=T	major_cov=61/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/48
RA	5062	.	1	2045110	0	T	G	consensus_score=185.1	frequency=1	major_base=G	major_cov=30/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/34
RA	5063	.	1	2047732	0	T	G	bias_e_value=2102720	bias_p_value=1	consensus_score=329.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=66/43	major_frequency=9.909e-01	minor_base=A	minor_cov=1/0	new_cov=66/43	polymorphism_frequency=9.909e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/43
RA	5064	.	1	2049164	0	C	T	consensus_score=42.4	frequency=1	major_base=T	major_cov=8/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/8
RA	5065	.	1	2051294	0	T	C	consensus_score=310.9	frequency=1	major_base=C	major_cov=64/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/41
RA	5066	.	1	2053574	0	C	T	consensus_score=288.8	frequency=1	major_base=T	major_cov=56/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/44
RA	5067	.	1	2054297	0	T	C	consensus_score=275.1	frequency=1	major_base=C	major_cov=52/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/42
RA	5068	.	1	2054846	1	.	T	consensus_score=358.0	frequency=1	major_base=T	major_cov=73/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=73/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=73/46
RA	5069	.	1	2054846	2	.	T	bias_e_value=1585270	bias_p_value=0.753916	consensus_score=354.2	fisher_strand_p_value=0.386555	frequency=1	ks_quality_p_value=0.999858	major_base=T	major_cov=73/45	major_frequency=9.916e-01	minor_base=.	minor_cov=0/1	new_cov=73/45	polymorphism_frequency=9.916e-01	polymorphism_score=-3.8	prediction=consensus	ref_cov=0/1	total_cov=73/46
RA	5070	.	1	2055665	0	G	T	consensus_score=271.2	frequency=1	major_base=T	major_cov=47/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/47
RA	5071	.	1	2056953	0	A	G	consensus_score=259.9	frequency=1	major_base=G	major_cov=39/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/50
RA	5072	.	1	2057672	0	A	G	bias_e_value=1393140	bias_p_value=0.66254	consensus_score=189.8	fisher_strand_p_value=0.304348	frequency=1	ks_quality_p_value=0.9894	major_base=G	major_cov=48/20	major_frequency=9.855e-01	minor_base=.	minor_cov=0/1	new_cov=48/20	polymorphism_frequency=9.855e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=0/0	total_cov=48/21
RA	5073	.	1	2057820	0	G	A	consensus_score=162.8	frequency=1	major_base=A	major_cov=26/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/32
RA	5074	.	1	2060005	1	.	G	consensus_score=325.5	frequency=1	major_base=G	major_cov=51/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/59
RA	5075	.	1	2060893	0	G	A	bias_e_value=1602660	bias_p_value=0.762183	consensus_score=382.6	fisher_strand_p_value=0.395349	frequency=1	ks_quality_p_value=0.999879	major_base=A	major_cov=50/78	major_frequency=9.922e-01	minor_base=.	minor_cov=1/0	new_cov=50/78	polymorphism_frequency=9.922e-01	polymorphism_score=-4.8	prediction=consensus	ref_cov=0/0	total_cov=51/78
RA	5076	.	1	2063045	0	T	C	consensus_score=334.1	frequency=1	major_base=C	major_cov=61/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/48
RA	5077	.	1	2064329	0	A	G	consensus_score=296.0	frequency=1	major_base=G	major_cov=53/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/49
RA	5078	.	1	2066374	0	C	T	consensus_score=256.9	frequency=1	major_base=T	major_cov=40/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/49
RA	5079	.	1	2067985	0	T	C	consensus_score=226.8	frequency=1	major_base=C	major_cov=31/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/45
RA	5080	.	1	2068293	0	T	G	consensus_score=255.4	frequency=1	major_base=G	major_cov=52/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/35
RA	5081	.	1	2068509	0	C	T	consensus_score=242.5	frequency=1	major_base=T	major_cov=45/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/39
RA	5082	.	1	2071350	0	G	A	consensus_score=287.5	frequency=1	major_base=A	major_cov=44/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/54
RA	5083	.	1	2073346	0	A	G	consensus_score=264.4	frequency=1	major_base=G	major_cov=32/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/57
RA	5084	.	1	2075393	0	T	C	consensus_score=339.9	frequency=1	major_base=C	major_cov=49/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/62
RA	5085	.	1	2076162	0	A	G	consensus_score=331.4	frequency=1	major_base=G	major_cov=67/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=67/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/44
RA	5086	.	1	2076609	0	C	.	bias_e_value=636610	bias_p_value=0.302756	consensus_score=449.9	fisher_strand_p_value=0.0883619	frequency=1	ks_quality_p_value=1	major_base=.	major_cov=61/47	major_frequency=9.730e-01	minor_base=A	minor_cov=0/3	new_cov=61/47	polymorphism_frequency=9.730e-01	polymorphism_score=3.3	prediction=consensus	ref_cov=0/0	total_cov=61/52
RA	5087	.	1	2078164	0	T	C	bias_e_value=2094720	bias_p_value=0.996195	consensus_score=309.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.914046	major_base=C	major_cov=52/56	major_frequency=9.908e-01	minor_base=T	minor_cov=0/1	new_cov=52/56	polymorphism_frequency=9.908e-01	polymorphism_score=-4.9	prediction=consensus	ref_cov=0/1	total_cov=52/57
RA	5088	.	1	2079094	0	T	C	consensus_score=421.8	frequency=1	major_base=C	major_cov=82/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=82/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=82/60
RA	5089	.	1	2080463	0	A	G	consensus_score=433.9	frequency=1	major_base=G	major_cov=82/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=82/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=82/61
RA	5090	.	1	2082879	0	G	A	consensus_score=135.7	frequency=1	major_base=A	major_cov=28/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/20
RA	5091	.	1	2083300	0	C	T	consensus_score=322.7	frequency=1	major_base=T	major_cov=52/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/61
RA	5092	.	1	2088264	0	A	G	consensus_score=347.2	frequency=1	major_base=G	major_cov=63/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/56
RA	5093	.	1	2089280	0	C	T	consensus_score=307.6	frequency=1	major_base=T	major_cov=64/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/42
RA	5094	.	1	2089794	0	T	C	consensus_score=218.2	frequency=1	major_base=C	major_cov=42/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/31
RA	5095	.	1	2092137	0	C	T	consensus_score=356.9	frequency=1	major_base=T	major_cov=60/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/63
RA	5096	.	1	2097210	0	C	T	consensus_score=377.4	frequency=1	major_base=T	major_cov=61/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/67
RA	5097	.	1	2097339	0	C	T	consensus_score=326.6	frequency=1	major_base=T	major_cov=59/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/50
RA	5098	.	1	2097632	0	A	G	consensus_score=178.3	frequency=1	major_base=G	major_cov=35/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/27
RA	5099	.	1	2098369	0	G	A	consensus_score=334.4	frequency=1	major_base=A	major_cov=68/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=68/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/46
RA	5100	.	1	2098907	0	G	A	consensus_score=318.2	frequency=1	major_base=A	major_cov=53/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/61
RA	5101	.	1	2099544	0	A	G	consensus_score=311.1	frequency=1	major_base=G	major_cov=50/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/55
RA	5102	.	1	2100638	0	T	C	consensus_score=366.1	frequency=1	major_base=C	major_cov=69/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=69/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=69/57
MC	5103	.	1	819	2425	56	0	left_inside_cov=23	left_outside_cov=24	right_inside_cov=0	right_outside_cov=85
MC	5104	.	1	163530	163548	0	0	left_inside_cov=0	left_outside_cov=85	right_inside_cov=0	right_outside_cov=85
MC	5105	.	1	220335	220461	0	0	left_inside_cov=0	left_outside_cov=84	right_inside_cov=21	right_outside_cov=27
MC	5106	.	1	256910	257302	0	0	left_inside_cov=0	left_outside_cov=121	right_inside_cov=0	right_outside_cov=121
MC	5107	.	1	276433	276503	0	0	left_inside_cov=22	left_outside_cov=24	right_inside_cov=0	right_outside_cov=24
MC	5108	.	1	278972	278987	0	0	left_inside_cov=23	left_outside_cov=29	right_inside_cov=0	right_outside_cov=130
MC	5109	.	1	291065	291067	0	0	left_inside_cov=0	left_outside_cov=95	right_inside_cov=0	right_outside_cov=94
MC	5110	.	1	294674	296282	0	0	left_inside_cov=0	left_outside_cov=132	right_inside_cov=0	right_outside_cov=130
MC	5111	.	1	296904	297821	0	0	left_inside_cov=14	left_outside_cov=34	right_inside_cov=23	right_outside_cov=24
MC	5112	.	1	341790	341801	0	0	left_inside_cov=0	left_outside_cov=86	right_inside_cov=0	right_outside_cov=85
MC	5113	.	1	363422	364883	0	0	left_inside_cov=0	left_outside_cov=101	right_inside_cov=0	right_outside_cov=101
MC	5114	.	1	375634	375637	0	0	left_inside_cov=0	left_outside_cov=166	right_inside_cov=0	right_outside_cov=166
MC	5115	.	1	441882	442863	0	0	left_inside_cov=0	left_outside_cov=76	right_inside_cov=22	right_outside_cov=24
MC	5116	.	1	443528	443530	0	0	left_inside_cov=0	left_outside_cov=68	right_inside_cov=0	right_outside_cov=81
MC	5117	.	1	516291	516306	0	0	left_inside_cov=0	left_outside_cov=82	right_inside_cov=0	right_outside_cov=82
MC	5118	.	1	554883	555075	51	84	left_inside_cov=23	left_outside_cov=25	right_inside_cov=23	right_outside_cov=24
MC	5119	.	1	564336	564677	0	188	left_inside_cov=20	left_outside_cov=33	right_inside_cov=23	right_outside_cov=24
MC	5120	.	1	601476	601479	0	0	left_inside_cov=0	left_outside_cov=95	right_inside_cov=0	right_outside_cov=95
MC	5121	.	1	646524	653338	0	0	left_inside_cov=23	left_outside_cov=25	right_inside_cov=21	right_outside_cov=24
MC	5122	.	1	686937	687012	0	0	left_inside_cov=0	left_outside_cov=86	right_inside_cov=0	right_outside_cov=92
MC	5123	.	1	787281	788930	0	0	left_inside_cov=0	left_outside_cov=76	right_inside_cov=1	right_outside_cov=77
MC	5124	.	1	800057	801921	0	0	left_inside_cov=0	left_outside_cov=102	right_inside_cov=0	right_outside_cov=102
MC	5125	.	1	827161	827163	0	0	left_inside_cov=0	left_outside_cov=52	right_inside_cov=0	right_outside_cov=52
MC	5126	.	1	865250	866498	0	0	left_inside_cov=0	left_outside_cov=87	right_inside_cov=0	right_outside_cov=87
MC	5127	.	1	869212	869807	0	0	left_inside_cov=22	left_outside_cov=25	right_inside_cov=23	right_outside_cov=25
MC	5128	.	1	892051	893447	0	0	left_inside_cov=21	left_outside_cov=27	right_inside_cov=23	right_outside_cov=24
MC	5129	.	1	1036872	1037241	0	0	left_inside_cov=18	left_outside_cov=24	right_inside_cov=4	right_outside_cov=52
MC	5130	.	1	1037316	1039211	0	0	left_inside_cov=14	left_outside_cov=25	right_inside_cov=22	right_outside_cov=28
MC	5131	.	1	1082363	1084115	0	52	left_inside_cov=23	left_outside_cov=24	right_inside_cov=23	right_outside_cov=27
MC	5132	.	1	1128102	1128620	170	288	left_inside_cov=22	left_outside_cov=25	right_inside_cov=21	right_outside_cov=24
MC	5133	.	1	1128796	1129522	0	75	left_inside_cov=0	left_outside_cov=55	right_inside_cov=23	right_outside_cov=26
MC	5134	.	1	1129724	1131831	0	0	left_inside_cov=0	left_outside_cov=57	right_inside_cov=23	right_outside_cov=24
MC	5135	.	1	1134052	1134813	0	0	left_inside_cov=22	left_outside_cov=24	right_inside_cov=23	right_outside_cov=24
MC	5136	.	1	1146264	1149808	0	0	left_inside_cov=0	left_outside_cov=74	right_inside_cov=0	right_outside_cov=73
MC	5137	.	1	1234394	1234996	0	0	left_inside_cov=0	left_outside_cov=35	right_inside_cov=0	right_outside_cov=35
MC	5138	.	1	1239638	1240486	0	0	left_inside_cov=0	left_outside_cov=66	right_inside_cov=0	right_outside_cov=66
MC	5139	.	1	1253468	1254601	0	0	left_inside_cov=23	left_outside_cov=24	right_inside_cov=23	right_outside_cov=24
MC	5140	.	1	1278403	1278412	0	0	left_inside_cov=0	left_outside_cov=66	right_inside_cov=0	right_outside_cov=66
MC	5141	.	1	1291359	1292749	906	0	left_inside_cov=23	left_outside_cov=24	right_inside_cov=23	right_outside_cov=24
MC	5142	.	1	1293122	1293858	0	0	left_inside_cov=1	left_outside_cov=36	right_inside_cov=0	right_outside_cov=28
MC	5143	.	1	1316220	1316223	0	0	left_inside_cov=0	left_outside_cov=84	right_inside_cov=0	right_outside_cov=84
MC	5144	.	1	1316741	1318487	0	0	left_inside_cov=23	left_outside_cov=24	right_inside_cov=23	right_outside_cov=24
MC	5145	.	1	1343694	1343696	0	0	left_inside_cov=0	left_outside_cov=103	right_inside_cov=0	right_outside_cov=101
MC	5146	.	1	1397119	1397121	0	0	left_inside_cov=0	left_outside_cov=46	right_inside_cov=0	right_outside_cov=46
MC	5147	.	1	1404507	1405453	0	0	left_inside_cov=0	left_outside_cov=59	right_inside_cov=0	right_outside_cov=60
MC	5148	.	1	1412702	1418446	0	5743	left_inside_cov=0	left_outside_cov=95	right_inside_cov=23	right_outside_cov=24
MC	5149	.	1	1618801	1620091	0	0	left_inside_cov=0	left_outside_cov=98	right_inside_cov=0	right_outside_cov=98
MC	5150	.	1	1620296	1621010	0	0	left_inside_cov=23	left_outside_cov=24	right_inside_cov=23	right_outside_cov=29
MC	5151	.	1	1685254	1685880	0	0	left_inside_cov=23	left_outside_cov=24	right_inside_cov=23	right_outside_cov=25
MC	5152	.	1	1710865	1711737	0	0	left_inside_cov=23	left_outside_cov=24	right_inside_cov=21	right_outside_cov=24
MC	5153	.	1	1824721	1824941	0	0	left_inside_cov=23	left_outside_cov=24	right_inside_cov=23	right_outside_cov=24
MC	5154	.	1	1833972	1834807	0	0	left_inside_cov=0	left_outside_cov=63	right_inside_cov=0	right_outside_cov=63
MC	5155	.	1	1877180	1878180	0	0	left_inside_cov=0	left_outside_cov=78	right_inside_cov=0	right_outside_cov=77
MC	5156	.	1	1892202	1894899	0	0	left_inside_cov=20	left_outside_cov=25	right_inside_cov=23	right_outside_cov=30
MC	5157	.	1	1914648	1914651	0	0	left_inside_cov=0	left_outside_cov=116	right_inside_cov=0	right_outside_cov=115
MC	5158	.	1	1961329	1984472	0	0	left_inside_cov=23	left_outside_cov=25	right_inside_cov=20	right_outside_cov=25
MC	5159	.	1	2101760	2102524	0	0	left_inside_cov=0	left_outside_cov=85	right_inside_cov=0	right_outside_cov=NA
MC	5160	.	2	1	196	0	0	left_inside_cov=0	left_outside_cov=NA	right_inside_cov=0	right_outside_cov=NA
JC	5161	.	1	2426	1	1	2101759	-1	0	alignment_overlap=49	coverage_minus=35	coverage_plus=33	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=165	key=1__2426__1__1__2101808__-1__49____251__251__0__0	max_left=196	max_left_minus=196	max_left_plus=188	max_min_left=100	max_min_left_minus=100	max_min_left_plus=95	max_min_right=92	max_min_right_minus=92	max_min_right_plus=90	max_pos_hash_score=332	max_right=201	max_right_minus=197	max_right_plus=201	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.00	new_junction_read_count=68	polymorphism_frequency=1.000e+00	pos_hash_score=46	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=49	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=165	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=68
JC	5162	.	1	11625	-1	1	220334	-1	0	alignment_overlap=40	coverage_minus=28	coverage_plus=31	flanking_left=251	flanking_right=251	frequency=6.160e-01	junction_possible_overlap_registers=174	key=1__11625__-1__1__220374__-1__40____251__251__0__0	max_left=211	max_left_minus=205	max_left_plus=211	max_min_left=105	max_min_left_minus=97	max_min_left_plus=105	max_min_right=92	max_min_right_minus=92	max_min_right_plus=44	max_pos_hash_score=350	max_right=207	max_right_minus=201	max_right_plus=207	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.84	new_junction_read_count=60	polymorphism_frequency=6.160e-01	pos_hash_score=42	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.04	side_1_overlap=40	side_1_possible_overlap_registers=214	side_1_read_count=92	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=174	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=59
JC	5163	.	1	26663	-1	1	26756	-1	0	alignment_overlap=7	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=2.687e-02	junction_possible_overlap_registers=207	key=1__26663__-1__1__26763__-1__7____251__251__0__0	max_left=141	max_left_minus=141	max_left_plus=141	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=68	max_min_right_minus=68	max_min_right_plus=68	max_pos_hash_score=416	max_right=68	max_right_minus=68	max_right_plus=68	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=2.687e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.28	side_1_overlap=7	side_1_possible_overlap_registers=214	side_1_read_count=113	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.26	side_2_overlap=0	side_2_possible_overlap_registers=207	side_2_read_count=108	side_2_redundant=0	total_non_overlap_reads=3
JC	5164	.	1	97911	1	1	1412701	-1	0	alignment_overlap=5	coverage_minus=37	coverage_plus=45	flanking_left=251	flanking_right=251	frequency=6.236e-01	junction_possible_overlap_registers=209	key=1__97911__1__1__1412706__-1__5____251__251__0__0	max_left=185	max_left_minus=156	max_left_plus=185	max_min_left=121	max_min_left_minus=121	max_min_left_plus=121	max_min_right=120	max_min_right_minus=116	max_min_right_plus=120	max_pos_hash_score=420	max_right=227	max_right_minus=205	max_right_plus=227	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=1.03	new_junction_read_count=89	polymorphism_frequency=6.236e-01	pos_hash_score=55	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.25	side_1_overlap=5	side_1_possible_overlap_registers=214	side_1_read_count=110	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=82
JC	5165	.	1	98100	-1	1	278988	1	0	alignment_overlap=3	coverage_minus=50	coverage_plus=52	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=211	key=1__98100__-1__1__278985__1__3____251__251__0__0	max_left=187	max_left_minus=180	max_left_plus=187	max_min_left=117	max_min_left_minus=117	max_min_left_plus=116	max_min_right=123	max_min_right_minus=114	max_min_right_plus=123	max_pos_hash_score=424	max_right=245	max_right_minus=214	max_right_plus=245	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.42	new_junction_read_count=124	polymorphism_frequency=9.402e-01	pos_hash_score=70	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.18	side_1_overlap=3	side_1_possible_overlap_registers=214	side_1_read_count=16	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=211	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=102
JC	5166	.	1	129982	-1	1	130149	1	0	alignment_overlap=39	coverage_minus=32	coverage_plus=39	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=175	key=1__129982__-1__1__130110__1__39____251__251__0__1	max_left=210	max_left_minus=210	max_left_plus=210	max_min_left=105	max_min_left_minus=91	max_min_left_plus=105	max_min_right=103	max_min_right_minus=92	max_min_right_plus=103	max_pos_hash_score=352	max_right=163	max_right_minus=162	max_right_plus=163	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=2.20	new_junction_read_count=159	polymorphism_frequency=1.000e+00	pos_hash_score=53	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=39	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=71
JC	5167	.	1	130418	1	1	130428	-1	-13	alignment_overlap=-13	coverage_minus=165	coverage_plus=105	flanking_left=251	flanking_right=251	frequency=NA	junction_possible_overlap_registers=201	key=1__130418__1__1__130428__-1__-13__TAAAGAGAAAGAG__251__251__1__1	max_left=237	max_left_minus=237	max_left_plus=232	max_min_left=116	max_min_left_minus=116	max_min_left_plus=112	max_min_right=116	max_min_right_minus=114	max_min_right_plus=116	max_pos_hash_score=404	max_right=235	max_right_minus=233	max_right_plus=235	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=3.27	new_junction_read_count=271	polymorphism_frequency=NA	pos_hash_score=117	prediction=unknown	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=270	unique_read_sequence=TAAAGAGAAAGAG
JC	5168	.	1	130418	1	1	130429	-1	0	alignment_overlap=0	coverage_minus=43	coverage_plus=27	flanking_left=251	flanking_right=251	frequency=NA	junction_possible_overlap_registers=214	key=1__130418__1__1__130429__-1__0____251__251__1__1	max_left=201	max_left_minus=180	max_left_plus=201	max_min_left=125	max_min_left_minus=125	max_min_left_plus=86	max_min_right=118	max_min_right_minus=118	max_min_right_plus=109	max_pos_hash_score=430	max_right=249	max_right_minus=249	max_right_plus=236	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.79	new_junction_read_count=70	polymorphism_frequency=NA	pos_hash_score=52	prediction=unknown	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=70
JC	5169	.	1	132225	1	1	132364	1	0	alignment_overlap=17	coverage_minus=6	coverage_plus=0	flanking_left=251	flanking_right=251	frequency=NA	junction_possible_overlap_registers=197	key=1__132225__1__1__132347__1__17____251__251__1__1	max_left=103	max_left_minus=103	max_left_plus=0	max_min_left=103	max_min_left_minus=103	max_min_left_plus=0	max_min_right=90	max_min_right_minus=90	max_min_right_plus=0	max_pos_hash_score=396	max_right=199	max_right_minus=199	max_right_plus=0	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=NA	pos_hash_score=4	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=17	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=6
JC	5170	.	1	132241	-1	1	132346	-1	0	alignment_overlap=17	coverage_minus=3	coverage_plus=9	flanking_left=251	flanking_right=251	frequency=NA	junction_possible_overlap_registers=197	key=1__132241__-1__1__132363__-1__17____251__251__1__1	max_left=138	max_left_minus=138	max_left_plus=133	max_min_left=108	max_min_left_minus=107	max_min_left_plus=108	max_min_right=111	max_min_right_minus=15	max_min_right_plus=111	max_pos_hash_score=396	max_right=217	max_right_minus=217	max_right_plus=111	neg_log10_pos_hash_p_value=4.7	new_junction_coverage=0.15	new_junction_read_count=12	polymorphism_frequency=NA	pos_hash_score=9	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=17	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=12
JC	5171	.	1	133177	-1	1	133314	-1	0	alignment_overlap=3	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=NA	junction_possible_overlap_registers=211	key=1__133177__-1__1__133317__-1__3____251__251__1__1	max_left=162	max_left_minus=85	max_left_plus=162	max_min_left=115	max_min_left_minus=85	max_min_left_plus=115	max_min_right=86	max_min_right_minus=0	max_min_right_plus=86	max_pos_hash_score=424	max_right=133	max_right_minus=86	max_right_plus=133	neg_log10_pos_hash_p_value=7.4	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=NA	pos_hash_score=3	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=3	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=3
JC	5172	.	1	145199	-1	1	145200	1	-3	alignment_overlap=-3	coverage_minus=33	coverage_plus=34	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=211	key=1__145199__-1__1__145200__1__-3__AAT__251__251__0__0	max_left=242	max_left_minus=242	max_left_plus=211	max_min_left=122	max_min_left_minus=108	max_min_left_plus=122	max_min_right=111	max_min_right_minus=111	max_min_right_plus=111	max_pos_hash_score=418	max_right=231	max_right_minus=231	max_right_plus=219	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.78	new_junction_read_count=68	polymorphism_frequency=1.000e+00	pos_hash_score=52	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=3	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=211	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=67	unique_read_sequence=AAT
JC	5173	.	1	147286	1	1	147451	1	0	alignment_overlap=10	coverage_minus=3	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=7.271e-02	junction_possible_overlap_registers=204	key=1__147286__1__1__147441__1__10____251__251__0__0	max_left=97	max_left_minus=97	max_left_plus=97	max_min_left=97	max_min_left_minus=97	max_min_left_plus=97	max_min_right=75	max_min_right_minus=75	max_min_right_plus=45	max_pos_hash_score=410	max_right=117	max_right_minus=117	max_right_plus=117	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=7.271e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.84	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=74	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.68	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=57	side_2_redundant=0	total_non_overlap_reads=5
JC	5174	.	1	154636	1	1	154743	1	0	alignment_overlap=11	coverage_minus=2	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.834e-02	junction_possible_overlap_registers=203	key=1__154636__1__1__154732__1__11____251__251__0__0	max_left=88	max_left_minus=88	max_left_plus=88	max_min_left=88	max_min_left_minus=88	max_min_left_plus=86	max_min_right=70	max_min_right_minus=0	max_min_right_plus=70	max_pos_hash_score=408	max_right=154	max_right_minus=154	max_right_plus=147	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=3.834e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.18	side_1_overlap=11	side_1_possible_overlap_registers=214	side_1_read_count=104	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.22	side_2_overlap=0	side_2_possible_overlap_registers=203	side_2_read_count=102	side_2_redundant=0	total_non_overlap_reads=4
JC	5175	.	1	163529	-1	1	163549	1	0	alignment_overlap=0	coverage_minus=44	coverage_plus=40	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=214	key=1__163529__-1__1__163549__1__0____251__251__0__0	max_left=237	max_left_minus=237	max_left_plus=234	max_min_left=106	max_min_left_minus=106	max_min_left_plus=105	max_min_right=122	max_min_right_minus=122	max_min_right_plus=98	max_pos_hash_score=430	max_right=243	max_right_minus=243	max_right_plus=238	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.96	new_junction_read_count=85	polymorphism_frequency=1.000e+00	pos_hash_score=59	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=84
JC	5176	.	1	213724	1	1	213774	-1	-80	alignment_overlap=-80	coverage_minus=40	coverage_plus=25	flanking_left=251	flanking_right=251	frequency=7.966e-01	junction_possible_overlap_registers=134	key=1__213724__1__1__213774__-1__-80__GAGGTTCGAATCCTCTCGGGTGCGCCATTTTAAGTCGACTCTATGGTTTAAAATGGTTTGAGCGAGTTAAACATTCACTA__251__251__0__0	max_left=165	max_left_minus=159	max_left_plus=165	max_min_left=85	max_min_left_minus=79	max_min_left_plus=85	max_min_right=84	max_min_right_minus=78	max_min_right_plus=84	max_pos_hash_score=270	max_right=166	max_right_minus=166	max_right_plus=155	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.18	new_junction_read_count=65	polymorphism_frequency=7.966e-01	pos_hash_score=42	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.37	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=33	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.23	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=20	side_2_redundant=0	total_non_overlap_reads=65	unique_read_sequence=GAGGTTCGAATCCTCTCGGGTGCGCCATTTTAAGTCGACTCTATGGTTTAAAATGGTTTGAGCGAGTTAAACATTCACTA
JC	5177	.	1	220431	1	1	297983	1	0	alignment_overlap=1	coverage_minus=5	coverage_plus=5	flanking_left=251	flanking_right=251	frequency=3.007e-01	junction_possible_overlap_registers=213	key=1__220431__1__1__297982__1__1____251__251__0__0	max_left=246	max_left_minus=246	max_left_plus=245	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=21	max_min_right_minus=10	max_min_right_plus=21	max_pos_hash_score=428	max_right=21	max_right_minus=10	max_right_plus=21	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.26	new_junction_read_count=23	polymorphism_frequency=3.007e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=1	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.22	side_2_overlap=0	side_2_possible_overlap_registers=213	side_2_read_count=107	side_2_redundant=0	total_non_overlap_reads=10
JC	5178	.	1	220431	1	1	365236	-1	-4	alignment_overlap=-4	coverage_minus=6	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=7.984e-02	junction_possible_overlap_registers=205	key=1__220431__1__1__365236__-1__-4__AAAT__251__251__0__0	max_left=247	max_left_minus=247	max_left_plus=246	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=11	max_min_right_minus=11	max_min_right_plus=4	max_pos_hash_score=412	max_right=11	max_right_minus=11	max_right_plus=4	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.02	new_junction_read_count=2	polymorphism_frequency=7.984e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=5	side_2_coverage=0.55	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=47	side_2_redundant=0	total_non_overlap_reads=8	unique_read_sequence=AAAT
JC	5179	.	1	220431	1	1	462514	-1	-4	alignment_overlap=-4	coverage_minus=6	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=5.093e-02	junction_possible_overlap_registers=205	key=1__220431__1__1__462514__-1__-4__AAAT__251__251__0__0	max_left=247	max_left_minus=247	max_left_plus=246	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=11	max_min_right_minus=11	max_min_right_plus=4	max_pos_hash_score=412	max_right=11	max_right_minus=11	max_right_plus=4	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.02	new_junction_read_count=2	polymorphism_frequency=5.093e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=5	side_2_coverage=0.88	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=76	side_2_redundant=0	total_non_overlap_reads=8	unique_read_sequence=AAAT
JC	5180	.	1	220431	1	1	579157	-1	-4	alignment_overlap=-4	coverage_minus=6	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=1.130e-01	junction_possible_overlap_registers=205	key=1__220431__1__1__579157__-1__-4__AAAT__251__251__0__0	max_left=247	max_left_minus=247	max_left_plus=246	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=11	max_min_right_minus=11	max_min_right_plus=4	max_pos_hash_score=412	max_right=11	max_right_minus=11	max_right_plus=4	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.02	new_junction_read_count=2	polymorphism_frequency=1.130e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=5	side_2_coverage=0.37	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=32	side_2_redundant=0	total_non_overlap_reads=8	unique_read_sequence=AAAT
JC	5181	.	1	220431	1	1	589481	1	0	alignment_overlap=1	coverage_minus=6	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.478e-01	junction_possible_overlap_registers=213	key=1__220431__1__1__589480__1__1____251__251__0__0	max_left=246	max_left_minus=246	max_left_plus=245	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=8	max_pos_hash_score=428	max_right=15	max_right_minus=15	max_right_plus=8	neg_log10_pos_hash_p_value=6.9	new_junction_coverage=0.09	new_junction_read_count=8	polymorphism_frequency=3.478e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=1	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.34	side_2_overlap=0	side_2_possible_overlap_registers=213	side_2_read_count=30	side_2_redundant=0	total_non_overlap_reads=8
JC	5182	.	1	220431	1	1	1291205	-1	-4	alignment_overlap=-4	coverage_minus=6	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=4.793e-02	junction_possible_overlap_registers=205	key=1__220431__1__1__1291205__-1__-4__AAAT__251__251__0__0	max_left=247	max_left_minus=247	max_left_plus=246	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=11	max_min_right_minus=11	max_min_right_plus=4	max_pos_hash_score=412	max_right=11	max_right_minus=11	max_right_plus=4	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.02	new_junction_read_count=2	polymorphism_frequency=4.793e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=5	side_2_coverage=0.94	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=81	side_2_redundant=0	total_non_overlap_reads=8	unique_read_sequence=AAAT
JC	5183	.	1	220431	1	1	1446169	-1	-4	alignment_overlap=-4	coverage_minus=6	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=1.452e-01	junction_possible_overlap_registers=205	key=1__220431__1__1__1446169__-1__-4__AAAT__251__251__0__0	max_left=247	max_left_minus=247	max_left_plus=246	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=11	max_min_right_minus=11	max_min_right_plus=4	max_pos_hash_score=412	max_right=11	max_right_minus=11	max_right_plus=4	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.02	new_junction_read_count=2	polymorphism_frequency=1.452e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=5	side_2_coverage=0.28	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=24	side_2_redundant=0	total_non_overlap_reads=8	unique_read_sequence=AAAT
JC	5184	.	1	220431	1	1	1958264	-1	-4	alignment_overlap=-4	coverage_minus=6	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=1.044e-01	junction_possible_overlap_registers=205	key=1__220431__1__1__1958264__-1__-4__AAAT__251__251__0__0	max_left=247	max_left_minus=247	max_left_plus=246	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=11	max_min_right_minus=11	max_min_right_plus=4	max_pos_hash_score=412	max_right=11	max_right_minus=11	max_right_plus=4	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.02	new_junction_read_count=2	polymorphism_frequency=1.044e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=5	side_2_coverage=0.41	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=35	side_2_redundant=0	total_non_overlap_reads=8	unique_read_sequence=AAAT
JC	5185	.	1	234670	1	1	235014	1	0	alignment_overlap=12	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=3.148e-02	junction_possible_overlap_registers=202	key=1__234670__1__1__235002__1__12____251__251__0__0	max_left=147	max_left_minus=147	max_left_plus=85	max_min_left=85	max_min_left_minus=65	max_min_left_plus=85	max_min_right=92	max_min_right_minus=92	max_min_right_plus=0	max_pos_hash_score=406	max_right=154	max_right_minus=101	max_right_plus=154	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.148e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.09	side_1_overlap=12	side_1_possible_overlap_registers=214	side_1_read_count=96	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.13	side_2_overlap=0	side_2_possible_overlap_registers=202	side_2_read_count=94	side_2_redundant=0	total_non_overlap_reads=3
JC	5186	.	1	246215	1	1	246222	-1	-1	alignment_overlap=-1	coverage_minus=31	coverage_plus=35	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=213	key=1__246215__1__1__246222__-1__-1__A__251__251__0__1	max_left=227	max_left_minus=198	max_left_plus=227	max_min_left=106	max_min_left_minus=106	max_min_left_plus=64	max_min_right=123	max_min_right_minus=94	max_min_right_plus=123	max_pos_hash_score=428	max_right=246	max_right_minus=233	max_right_plus=246	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.75	new_junction_read_count=66	polymorphism_frequency=9.707e-01	pos_hash_score=48	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.02	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=2	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=66	unique_read_sequence=A
JC	5187	.	1	256909	-1	1	257303	1	0	alignment_overlap=2	coverage_minus=68	coverage_plus=51	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=212	key=1__256909__-1__1__257301__1__2____251__251__0__0	max_left=247	max_left_minus=244	max_left_plus=247	max_min_left=123	max_min_left_minus=123	max_min_left_plus=110	max_min_right=112	max_min_right_minus=112	max_min_right_plus=90	max_pos_hash_score=426	max_right=248	max_right_minus=243	max_right_plus=248	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.37	new_junction_read_count=120	polymorphism_frequency=1.000e+00	pos_hash_score=78	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=2	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=212	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=119
JC	5188	.	1	265218	1	1	265774	1	0	alignment_overlap=13	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=2.927e-02	junction_possible_overlap_registers=201	key=1__265218__1__1__265761__1__13____251__251__0__0	max_left=81	max_left_minus=81	max_left_plus=43	max_min_left=81	max_min_left_minus=81	max_min_left_plus=43	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=404	max_right=178	max_right_minus=157	max_right_plus=178	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=2.927e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.93	side_1_overlap=13	side_1_possible_overlap_registers=214	side_1_read_count=82	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.47	side_2_overlap=0	side_2_possible_overlap_registers=201	side_2_read_count=122	side_2_redundant=0	total_non_overlap_reads=3
JC	5189	.	1	291068	1	1	291064	-1	0	alignment_overlap=8	coverage_minus=42	coverage_plus=52	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=206	key=1__291068__1__1__291072__-1__8____251__251__0__0	max_left=233	max_left_minus=233	max_left_plus=223	max_min_left=121	max_min_left_minus=116	max_min_left_plus=121	max_min_right=114	max_min_right_minus=114	max_min_right_plus=110	max_pos_hash_score=414	max_right=237	max_right_minus=226	max_right_plus=237	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.11	new_junction_read_count=94	polymorphism_frequency=1.000e+00	pos_hash_score=73	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=206	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=94
JC	5190	.	1	294673	-1	1	296283	1	0	alignment_overlap=5	coverage_minus=60	coverage_plus=67	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=209	key=1__294673__-1__1__296278__1__5____251__251__0__0	max_left=241	max_left_minus=232	max_left_plus=241	max_min_left=113	max_min_left_minus=91	max_min_left_plus=113	max_min_right=119	max_min_right_minus=119	max_min_right_plus=110	max_pos_hash_score=420	max_right=243	max_right_minus=227	max_right_plus=243	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.47	new_junction_read_count=127	polymorphism_frequency=1.000e+00	pos_hash_score=80	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=5	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=127
JC	5191	.	1	326937	-1	1	326938	1	-11	alignment_overlap=-11	coverage_minus=12	coverage_plus=8	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=203	key=1__326937__-1__1__326938__1__-11__TAATTAGCAGA__251__251__0__0	max_left=239	max_left_minus=238	max_left_plus=239	max_min_left=107	max_min_left_minus=97	max_min_left_plus=107	max_min_right=119	max_min_right_minus=86	max_min_right_plus=119	max_pos_hash_score=400	max_right=236	max_right_minus=236	max_right_plus=149	neg_log10_pos_hash_p_value=3.1	new_junction_coverage=0.18	new_junction_read_count=15	polymorphism_frequency=8.868e-01	pos_hash_score=16	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=4	side_1_coverage=0.02	side_1_overlap=0	side_1_possible_overlap_registers=210	side_1_read_count=2	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.02	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=2	side_2_redundant=0	total_non_overlap_reads=20	unique_read_sequence=TAATTAGCAGA
JC	5192	.	1	341789	-1	1	341802	1	0	alignment_overlap=9	coverage_minus=49	coverage_plus=33	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=205	key=1__341789__-1__1__341793__1__9____251__251__0__0	max_left=239	max_left_minus=239	max_left_plus=237	max_min_left=118	max_min_left_minus=118	max_min_left_plus=110	max_min_right=117	max_min_right_minus=115	max_min_right_plus=117	max_pos_hash_score=412	max_right=235	max_right_minus=235	max_right_plus=226	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.98	new_junction_read_count=83	polymorphism_frequency=1.000e+00	pos_hash_score=58	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=9	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=82
JC	5193	.	1	353819	-1	1	354084	-1	0	alignment_overlap=8	coverage_minus=1	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=2.646e-02	junction_possible_overlap_registers=206	key=1__353819__-1__1__354092__-1__8____251__251__0__0	max_left=196	max_left_minus=196	max_left_plus=195	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=82	max_min_right_minus=46	max_min_right_plus=82	max_pos_hash_score=414	max_right=82	max_right_minus=46	max_right_plus=82	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=2.646e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.72	side_1_overlap=8	side_1_possible_overlap_registers=214	side_1_read_count=152	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.74	side_2_overlap=0	side_2_possible_overlap_registers=206	side_2_read_count=148	side_2_redundant=0	total_non_overlap_reads=4
JC	5194	.	1	363421	-1	1	364884	1	0	alignment_overlap=7	coverage_minus=54	coverage_plus=45	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=207	key=1__363421__-1__1__364877__1__7____251__251__0__0	max_left=231	max_left_minus=228	max_left_plus=231	max_min_left=121	max_min_left_minus=111	max_min_left_plus=121	max_min_right=116	max_min_right_minus=116	max_min_right_plus=115	max_pos_hash_score=416	max_right=242	max_right_minus=242	max_right_plus=233	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.16	new_junction_read_count=99	polymorphism_frequency=1.000e+00	pos_hash_score=66	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=7	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=207	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=99
JC	5195	.	1	375633	-1	1	375638	1	0	alignment_overlap=0	coverage_minus=74	coverage_plus=91	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=214	key=1__375633__-1__1__375638__1__0____251__251__0__0	max_left=250	max_left_minus=250	max_left_plus=247	max_min_left=125	max_min_left_minus=125	max_min_left_plus=119	max_min_right=122	max_min_right_minus=122	max_min_right_plus=122	max_pos_hash_score=430	max_right=249	max_right_minus=249	max_right_plus=240	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.88	new_junction_read_count=166	polymorphism_frequency=1.000e+00	pos_hash_score=86	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=165
JC	5196	.	1	412621	-1	1	412622	1	-5	alignment_overlap=-5	coverage_minus=59	coverage_plus=44	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=209	key=1__412621__-1__1__412622__1__-5__ATTTT__251__251__0__0	max_left=242	max_left_minus=230	max_left_plus=242	max_min_left=116	max_min_left_minus=112	max_min_left_plus=116	max_min_right=122	max_min_right_minus=113	max_min_right_plus=122	max_pos_hash_score=404	max_right=244	max_right_minus=244	max_right_plus=220	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.23	new_junction_read_count=106	polymorphism_frequency=1.000e+00	pos_hash_score=69	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=8	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=206	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=103	unique_read_sequence=ATTTT
JC	5197	.	1	418513	1	1	418641	1	0	alignment_overlap=5	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=2.139e-02	junction_possible_overlap_registers=209	key=1__418513__1__1__418636__1__5____251__251__0__0	max_left=117	max_left_minus=117	max_left_plus=73	max_min_left=117	max_min_left_minus=117	max_min_left_plus=73	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=420	max_right=173	max_right_minus=129	max_right_plus=173	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.139e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.70	side_1_overlap=5	side_1_possible_overlap_registers=214	side_1_read_count=150	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.48	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=128	side_2_redundant=0	total_non_overlap_reads=3
JC	5198	.	1	441616	-1	1	443531	1	0	alignment_overlap=5	coverage_minus=27	coverage_plus=52	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=209	key=1__441616__-1__1__443526__1__5____251__251__0__0	max_left=240	max_left_minus=237	max_left_plus=240	max_min_left=94	max_min_left_minus=59	max_min_left_plus=94	max_min_right=121	max_min_right_minus=107	max_min_right_plus=121	max_pos_hash_score=420	max_right=241	max_right_minus=237	max_right_plus=241	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.92	new_junction_read_count=79	polymorphism_frequency=1.000e+00	pos_hash_score=57	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=5	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=79
JC	5199	.	1	441617	1	1	1347301	1	0	alignment_overlap=0	coverage_minus=38	coverage_plus=43	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=214	key=1__441617__1__1__1347301__1__0____251__251__0__0	max_left=248	max_left_minus=201	max_left_plus=248	max_min_left=119	max_min_left_minus=93	max_min_left_plus=119	max_min_right=119	max_min_right_minus=113	max_min_right_plus=119	max_pos_hash_score=430	max_right=245	max_right_minus=245	max_right_plus=229	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.93	new_junction_read_count=82	polymorphism_frequency=9.880e-01	pos_hash_score=58	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.02	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=2	side_2_redundant=0	total_non_overlap_reads=81
JC	5200	.	1	441881	-1	1	1037242	1	-65	alignment_overlap=-65	coverage_minus=14	coverage_plus=17	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=149	key=1__441881__-1__1__1037242__1__-65__GCACGACTTGCCCGATGATTTGCAGGTTTTCGGCTTCAGCTTGGGTTAGTTGGATTGGTGGATAT__251__251__0__0	max_left=181	max_left_minus=181	max_left_plus=178	max_min_left=82	max_min_left_minus=82	max_min_left_plus=78	max_min_right=74	max_min_right_minus=74	max_min_right_plus=70	max_pos_hash_score=300	max_right=114	max_right_minus=113	max_right_plus=114	neg_log10_pos_hash_p_value=1.3	new_junction_coverage=0.75	new_junction_read_count=46	polymorphism_frequency=9.706e-01	pos_hash_score=23	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.05	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=4	side_2_redundant=0	total_non_overlap_reads=31	unique_read_sequence=GCACGACTTGCCCGATGATTTGCAGGTTTTCGGCTTCAGCTTGGGTTAGTTGGATTGGTGGATAT
JC	5201	.	1	443170	-1	1	443171	1	-6	alignment_overlap=-6	coverage_minus=33	coverage_plus=37	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=208	key=1__443170__-1__1__443171__1__-6__TGGCGG__251__251__0__0	max_left=235	max_left_minus=235	max_left_plus=231	max_min_left=119	max_min_left_minus=103	max_min_left_plus=119	max_min_right=122	max_min_right_minus=121	max_min_right_plus=122	max_pos_hash_score=416	max_right=233	max_right_minus=233	max_right_plus=227	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.96	new_junction_read_count=82	polymorphism_frequency=9.232e-01	pos_hash_score=55	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=1	side_1_coverage=0.08	side_1_overlap=0	side_1_possible_overlap_registers=213	side_1_read_count=7	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.08	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=7	side_2_redundant=0	total_non_overlap_reads=70	unique_read_sequence=TGGCGG
JC	5202	.	1	443527	-1	1	1347303	-1	0	alignment_overlap=2	coverage_minus=9	coverage_plus=34	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=212	key=1__443527__-1__1__1347305__-1__2____251__251__0__0	max_left=73	max_left_minus=48	max_left_plus=73	max_min_left=73	max_min_left_minus=48	max_min_left_plus=73	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=426	max_right=240	max_right_minus=240	max_right_plus=223	neg_log10_pos_hash_p_value=2.4	new_junction_coverage=0.72	new_junction_read_count=63	polymorphism_frequency=9.921e-01	pos_hash_score=22	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=2	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.01	side_2_overlap=0	side_2_possible_overlap_registers=212	side_2_read_count=1	side_2_redundant=0	total_non_overlap_reads=43
JC	5203	.	1	454688	-1	1	455475	-1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=3.328e-02	junction_possible_overlap_registers=204	key=1__454688__-1__1__455485__-1__10____251__251__0__0	max_left=138	max_left_minus=138	max_left_plus=70	max_min_left=70	max_min_left_minus=70	max_min_left_plus=70	max_min_right=103	max_min_right_minus=103	max_min_right_plus=0	max_pos_hash_score=410	max_right=146	max_right_minus=146	max_right_plus=142	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.328e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.91	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=80	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.16	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=98	side_2_redundant=0	total_non_overlap_reads=3
JC	5204	.	1	462668	-1	1	462973	1	0	alignment_overlap=0	coverage_minus=7	coverage_plus=4	flanking_left=251	flanking_right=251	frequency=2.045e-01	junction_possible_overlap_registers=214	key=1__462668__-1__1__462973__1__0____251__251__0__1	max_left=242	max_left_minus=238	max_left_plus=242	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=26	max_min_right_minus=26	max_min_right_plus=26	max_pos_hash_score=430	max_right=26	max_right_minus=26	max_right_plus=26	neg_log10_pos_hash_p_value=5.0	new_junction_coverage=0.31	new_junction_read_count=27	polymorphism_frequency=2.045e-01	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.19	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=105	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=11
JC	5205	.	1	481759	1	1	481875	1	0	alignment_overlap=7	coverage_minus=3	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=3.968e-02	junction_possible_overlap_registers=207	key=1__481759__1__1__481868__1__7____251__251__0__0	max_left=103	max_left_minus=103	max_left_plus=77	max_min_left=103	max_min_left_minus=103	max_min_left_plus=77	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=416	max_right=166	max_right_minus=155	max_right_plus=166	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=3.968e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.18	side_1_overlap=7	side_1_possible_overlap_registers=214	side_1_read_count=104	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.09	side_2_overlap=0	side_2_possible_overlap_registers=207	side_2_read_count=93	side_2_redundant=0	total_non_overlap_reads=4
JC	5206	.	1	492638	-1	1	494745	-1	0	alignment_overlap=2	coverage_minus=51	coverage_plus=44	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=212	key=1__492638__-1__1__494747__-1__2____251__251__0__0	max_left=228	max_left_minus=224	max_left_plus=228	max_min_left=121	max_min_left_minus=121	max_min_left_plus=106	max_min_right=112	max_min_right_minus=110	max_min_right_plus=112	max_pos_hash_score=426	max_right=224	max_right_minus=203	max_right_plus=224	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.10	new_junction_read_count=96	polymorphism_frequency=9.749e-01	pos_hash_score=62	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.06	side_1_overlap=2	side_1_possible_overlap_registers=214	side_1_read_count=5	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=212	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=95
JC	5207	.	1	515551	-1	1	516037	-1	0	alignment_overlap=5	coverage_minus=2	coverage_plus=7	flanking_left=251	flanking_right=251	frequency=7.278e-02	junction_possible_overlap_registers=209	key=1__515551__-1__1__516042__-1__5____251__251__0__0	max_left=206	max_left_minus=206	max_left_plus=171	max_min_left=57	max_min_left_minus=0	max_min_left_plus=57	max_min_right=100	max_min_right_minus=72	max_min_right_plus=100	max_pos_hash_score=420	max_right=100	max_right_minus=72	max_right_plus=100	neg_log10_pos_hash_p_value=6.8	new_junction_coverage=0.10	new_junction_read_count=9	polymorphism_frequency=7.278e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.30	side_1_overlap=5	side_1_possible_overlap_registers=214	side_1_read_count=115	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.36	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=117	side_2_redundant=0	total_non_overlap_reads=9
JC	5208	.	1	516307	1	1	516290	-1	0	alignment_overlap=17	coverage_minus=38	coverage_plus=32	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=197	key=1__516307__1__1__516307__-1__17____251__251__0__0	max_left=233	max_left_minus=233	max_left_plus=230	max_min_left=101	max_min_left_minus=101	max_min_left_plus=78	max_min_right=116	max_min_right_minus=94	max_min_right_plus=116	max_pos_hash_score=396	max_right=233	max_right_minus=219	max_right_plus=233	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.93	new_junction_read_count=76	polymorphism_frequency=1.000e+00	pos_hash_score=49	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=17	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=70
JC	5209	.	1	535977	1	1	536354	1	0	alignment_overlap=4	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=2.443e-02	junction_possible_overlap_registers=210	key=1__535977__1__1__536350__1__4____251__251__0__0	max_left=228	max_left_minus=194	max_left_plus=228	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=88	max_min_right_minus=88	max_min_right_plus=19	max_pos_hash_score=422	max_right=88	max_right_minus=88	max_right_plus=19	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.443e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.46	side_1_overlap=4	side_1_possible_overlap_registers=214	side_1_read_count=129	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.30	side_2_overlap=0	side_2_possible_overlap_registers=210	side_2_read_count=113	side_2_redundant=0	total_non_overlap_reads=3
JC	5210	.	1	567899	-1	1	568221	-1	0	alignment_overlap=9	coverage_minus=2	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=5.165e-02	junction_possible_overlap_registers=205	key=1__567899__-1__1__568230__-1__9____251__251__0__0	max_left=129	max_left_minus=129	max_left_plus=122	max_min_left=38	max_min_left_minus=38	max_min_left_plus=0	max_min_right=120	max_min_right_minus=113	max_min_right_plus=120	max_pos_hash_score=412	max_right=120	max_right_minus=120	max_right_plus=120	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=5.165e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.84	side_1_overlap=9	side_1_possible_overlap_registers=214	side_1_read_count=74	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.90	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=76	side_2_redundant=0	total_non_overlap_reads=4
JC	5211	.	1	591744	-1	1	592061	-1	0	alignment_overlap=9	coverage_minus=2	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.492e-02	junction_possible_overlap_registers=205	key=1__591744__-1__1__592070__-1__9____251__251__0__0	max_left=136	max_left_minus=136	max_left_plus=130	max_min_left=79	max_min_left_minus=58	max_min_left_plus=79	max_min_right=111	max_min_right_minus=106	max_min_right_plus=111	max_pos_hash_score=412	max_right=183	max_right_minus=183	max_right_plus=163	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=3.492e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.31	side_1_overlap=9	side_1_possible_overlap_registers=214	side_1_read_count=116	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.30	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=110	side_2_redundant=0	total_non_overlap_reads=4
JC	5212	.	1	601480	1	1	601475	-1	0	alignment_overlap=5	coverage_minus=47	coverage_plus=46	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=209	key=1__601480__1__1__601480__-1__5____251__251__0__0	max_left=243	max_left_minus=206	max_left_plus=243	max_min_left=121	max_min_left_minus=121	max_min_left_plus=121	max_min_right=120	max_min_right_minus=114	max_min_right_plus=120	max_pos_hash_score=420	max_right=245	max_right_minus=236	max_right_plus=245	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=1.09	new_junction_read_count=94	polymorphism_frequency=1.000e+00	pos_hash_score=55	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=5	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=93
JC	5213	.	1	607374	1	1	607717	1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=6.051e-02	junction_possible_overlap_registers=204	key=1__607374__1__1__607707__1__10____251__251__0__0	max_left=195	max_left_minus=195	max_left_plus=169	max_min_left=32	max_min_left_minus=0	max_min_left_plus=32	max_min_right=72	max_min_right_minus=64	max_min_right_plus=72	max_pos_hash_score=410	max_right=213	max_right_minus=64	max_right_plus=213	neg_log10_pos_hash_p_value=6.2	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=6.051e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.89	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=79	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.32	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=111	side_2_redundant=0	total_non_overlap_reads=5
JC	5214	.	1	628845	-1	1	628928	-1	0	alignment_overlap=8	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.992e-02	junction_possible_overlap_registers=206	key=1__628845__-1__1__628936__-1__8____251__251__0__0	max_left=166	max_left_minus=109	max_left_plus=166	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=77	max_min_right_minus=24	max_min_right_plus=77	max_pos_hash_score=414	max_right=77	max_right_minus=24	max_right_plus=77	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.992e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.82	side_1_overlap=8	side_1_possible_overlap_registers=214	side_1_read_count=72	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.88	side_2_overlap=0	side_2_possible_overlap_registers=206	side_2_read_count=75	side_2_redundant=0	total_non_overlap_reads=3
JC	5215	.	1	679159	1	1	679737	1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=5.817e-02	junction_possible_overlap_registers=204	key=1__679159__1__1__679727__1__10____251__251__0__0	max_left=130	max_left_minus=130	max_left_plus=105	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=111	max_min_right_minus=111	max_min_right_plus=104	max_pos_hash_score=410	max_right=111	max_right_minus=111	max_right_plus=104	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=5.817e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.60	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=53	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.94	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=79	side_2_redundant=0	total_non_overlap_reads=4
JC	5216	.	1	686936	-1	1	687013	1	-57	alignment_overlap=-57	coverage_minus=39	coverage_plus=24	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=157	key=1__686936__-1__1__687013__1__-57__GATATTTCTGATATTTCTGTTGATATGCGTCGAAATGAAAGGAATTAGGATGAATAA__251__251__0__0	max_left=191	max_left_minus=182	max_left_plus=191	max_min_left=92	max_min_left_minus=88	max_min_left_plus=92	max_min_right=92	max_min_right_minus=92	max_min_right_plus=92	max_pos_hash_score=278	max_right=187	max_right_minus=187	max_right_plus=181	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.83	new_junction_read_count=54	polymorphism_frequency=1.000e+00	pos_hash_score=39	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=19	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=195	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=63	unique_read_sequence=GATATTTCTGATATTTCTGTTGATATGCGTCGAAATGAAAGGAATTAGGATGAATAA
JC	5217	.	1	690442	-1	1	691008	-1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=4.217e-02	junction_possible_overlap_registers=204	key=1__690442__-1__1__691018__-1__10____251__251__0__0	max_left=198	max_left_minus=198	max_left_plus=140	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=77	max_min_right_minus=77	max_min_right_plus=77	max_pos_hash_score=410	max_right=77	max_right_minus=77	max_right_plus=77	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=4.217e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.14	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=101	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.48	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=40	side_2_redundant=0	total_non_overlap_reads=3
JC	5218	.	1	722521	-1	1	722522	1	-6	alignment_overlap=-6	coverage_minus=18	coverage_plus=9	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=208	key=1__722521__-1__1__722522__1__-6__TAAAGG__251__251__0__0	max_left=193	max_left_minus=164	max_left_plus=193	max_min_left=109	max_min_left_minus=77	max_min_left_plus=109	max_min_right=99	max_min_right_minus=99	max_min_right_plus=52	max_pos_hash_score=410	max_right=233	max_right_minus=233	max_right_plus=202	neg_log10_pos_hash_p_value=2.4	new_junction_coverage=0.35	new_junction_read_count=30	polymorphism_frequency=1.000e+00	pos_hash_score=21	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=4	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=210	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=27	unique_read_sequence=TAAAGG
JC	5219	.	1	727749	-1	1	727753	1	0	alignment_overlap=1	coverage_minus=29	coverage_plus=12	flanking_left=251	flanking_right=251	frequency=7.616e-01	junction_possible_overlap_registers=213	key=1__727749__-1__1__727752__1__1____251__251__0__0	max_left=239	max_left_minus=239	max_left_plus=188	max_min_left=94	max_min_left_minus=94	max_min_left_plus=94	max_min_right=110	max_min_right_minus=90	max_min_right_plus=110	max_pos_hash_score=428	max_right=163	max_right_minus=163	max_right_plus=149	neg_log10_pos_hash_p_value=1.4	new_junction_coverage=0.58	new_junction_read_count=51	polymorphism_frequency=7.616e-01	pos_hash_score=33	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.18	side_1_overlap=1	side_1_possible_overlap_registers=214	side_1_read_count=16	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.18	side_2_overlap=0	side_2_possible_overlap_registers=213	side_2_read_count=16	side_2_redundant=0	total_non_overlap_reads=41
JC	5220	.	1	740650	-1	1	740784	-1	0	alignment_overlap=6	coverage_minus=1	coverage_plus=4	flanking_left=251	flanking_right=251	frequency=4.390e-02	junction_possible_overlap_registers=208	key=1__740650__-1__1__740790__-1__6____251__251__0__0	max_left=198	max_left_minus=74	max_left_plus=198	max_min_left=109	max_min_left_minus=74	max_min_left_plus=109	max_min_right=57	max_min_right_minus=0	max_min_right_plus=57	max_pos_hash_score=418	max_right=136	max_right_minus=136	max_right_plus=136	neg_log10_pos_hash_p_value=6.3	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=4.390e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.30	side_1_overlap=6	side_1_possible_overlap_registers=214	side_1_read_count=115	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.24	side_2_overlap=0	side_2_possible_overlap_registers=208	side_2_read_count=106	side_2_redundant=0	total_non_overlap_reads=5
JC	5221	.	1	757645	-1	1	757646	1	-9	alignment_overlap=-9	coverage_minus=41	coverage_plus=64	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=205	key=1__757645__-1__1__757646__1__-9__GAGAACAAA__251__251__0__0	max_left=235	max_left_minus=235	max_left_plus=235	max_min_left=119	max_min_left_minus=111	max_min_left_plus=119	max_min_right=121	max_min_right_minus=96	max_min_right_plus=121	max_pos_hash_score=394	max_right=234	max_right_minus=205	max_right_plus=234	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.24	new_junction_read_count=105	polymorphism_frequency=1.000e+00	pos_hash_score=68	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=9	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=205	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=105	unique_read_sequence=GAGAACAAA
JC	5222	.	1	763950	1	1	764300	1	0	alignment_overlap=11	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.567e-02	junction_possible_overlap_registers=203	key=1__763950__1__1__764289__1__11____251__251__0__0	max_left=204	max_left_minus=204	max_left_plus=179	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=111	max_min_right_minus=36	max_min_right_plus=111	max_pos_hash_score=408	max_right=111	max_right_minus=36	max_right_plus=111	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.567e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.05	side_1_overlap=11	side_1_possible_overlap_registers=214	side_1_read_count=93	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.88	side_2_overlap=0	side_2_possible_overlap_registers=203	side_2_read_count=74	side_2_redundant=0	total_non_overlap_reads=3
JC	5223	.	1	771407	-1	1	771480	-1	0	alignment_overlap=9	coverage_minus=2	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=6.173e-02	junction_possible_overlap_registers=205	key=1__771407__-1__1__771489__-1__9____251__251__0__0	max_left=176	max_left_minus=176	max_left_plus=169	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=73	max_min_right_minus=73	max_min_right_plus=73	max_pos_hash_score=412	max_right=73	max_right_minus=73	max_right_plus=73	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=6.173e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.08	side_1_overlap=9	side_1_possible_overlap_registers=214	side_1_read_count=95	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.72	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=61	side_2_redundant=0	total_non_overlap_reads=5
JC	5224	.	1	787280	-1	1	788931	1	0	alignment_overlap=29	coverage_minus=36	coverage_plus=35	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=185	key=1__787280__-1__1__788902__1__29____251__251__0__0	max_left=216	max_left_minus=216	max_left_plus=215	max_min_left=107	max_min_left_minus=107	max_min_left_plus=97	max_min_right=109	max_min_right_minus=109	max_min_right_plus=107	max_pos_hash_score=372	max_right=218	max_right_minus=206	max_right_plus=218	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.93	new_junction_read_count=71	polymorphism_frequency=1.000e+00	pos_hash_score=50	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=29	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=185	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=71
JC	5225	.	1	800056	-1	1	801922	1	0	alignment_overlap=3	coverage_minus=57	coverage_plus=44	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=211	key=1__800056__-1__1__801919__1__3____251__251__0__0	max_left=226	max_left_minus=226	max_left_plus=226	max_min_left=123	max_min_left_minus=123	max_min_left_plus=116	max_min_right=121	max_min_right_minus=117	max_min_right_plus=121	max_pos_hash_score=424	max_right=246	max_right_minus=231	max_right_plus=246	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.17	new_junction_read_count=102	polymorphism_frequency=1.000e+00	pos_hash_score=64	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=3	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=211	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=101
JC	5226	.	1	827164	1	1	827160	-1	0	alignment_overlap=9	coverage_minus=24	coverage_plus=26	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=205	key=1__827164__1__1__827169__-1__9____251__251__0__0	max_left=222	max_left_minus=192	max_left_plus=222	max_min_left=95	max_min_left_minus=93	max_min_left_plus=95	max_min_right=93	max_min_right_minus=70	max_min_right_plus=93	max_pos_hash_score=412	max_right=235	max_right_minus=234	max_right_plus=235	neg_log10_pos_hash_p_value=1.1	new_junction_coverage=0.60	new_junction_read_count=51	polymorphism_frequency=1.000e+00	pos_hash_score=35	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=9	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=50
JC	5227	.	1	837391	-1	1	837392	1	-9	alignment_overlap=-9	coverage_minus=43	coverage_plus=56	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=205	key=1__837391__-1__1__837392__1__-9__TACTTCGTG__251__251__0__0	max_left=236	max_left_minus=232	max_left_plus=236	max_min_left=110	max_min_left_minus=105	max_min_left_plus=110	max_min_right=118	max_min_right_minus=109	max_min_right_plus=118	max_pos_hash_score=396	max_right=238	max_right_minus=238	max_right_plus=234	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.16	new_junction_read_count=98	polymorphism_frequency=1.000e+00	pos_hash_score=59	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=8	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=206	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=99	unique_read_sequence=TACTTCGTG
JC	5228	.	1	865249	-1	1	866499	1	0	alignment_overlap=2	coverage_minus=31	coverage_plus=55	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=212	key=1__865249__-1__1__866497__1__2____251__251__0__0	max_left=246	max_left_minus=243	max_left_plus=246	max_min_left=115	max_min_left_minus=115	max_min_left_plus=91	max_min_right=112	max_min_right_minus=98	max_min_right_plus=112	max_pos_hash_score=426	max_right=246	max_right_minus=246	max_right_plus=242	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.99	new_junction_read_count=87	polymorphism_frequency=1.000e+00	pos_hash_score=56	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=2	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=212	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=86
JC	5229	.	1	976934	-1	1	976938	-1	0	alignment_overlap=13	coverage_minus=3	coverage_plus=0	flanking_left=251	flanking_right=251	frequency=4.295e-02	junction_possible_overlap_registers=201	key=1__976934__-1__1__976951__-1__13____251__251__0__0	max_left=123	max_left_minus=123	max_left_plus=0	max_min_left=75	max_min_left_minus=75	max_min_left_plus=0	max_min_right=114	max_min_right_minus=114	max_min_right_plus=0	max_pos_hash_score=404	max_right=237	max_right_minus=237	max_right_plus=0	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=4.295e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.80	side_1_overlap=13	side_1_possible_overlap_registers=214	side_1_read_count=71	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.81	side_2_overlap=0	side_2_possible_overlap_registers=201	side_2_read_count=67	side_2_redundant=0	total_non_overlap_reads=3
JC	5230	.	1	994527	-1	1	994877	-1	0	alignment_overlap=6	coverage_minus=0	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=3.350e-02	junction_possible_overlap_registers=208	key=1__994527__-1__1__994883__-1__6____251__251__0__0	max_left=170	max_left_minus=0	max_left_plus=170	max_min_left=84	max_min_left_minus=0	max_min_left_plus=84	max_min_right=75	max_min_right_minus=0	max_min_right_plus=75	max_pos_hash_score=418	max_right=239	max_right_minus=0	max_right_plus=239	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=3.350e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.17	side_1_overlap=6	side_1_possible_overlap_registers=214	side_1_read_count=103	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.85	side_2_overlap=0	side_2_possible_overlap_registers=208	side_2_read_count=73	side_2_redundant=0	total_non_overlap_reads=3
JC	5231	.	1	1002585	1	1	1002879	1	0	alignment_overlap=9	coverage_minus=2	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=4.281e-02	junction_possible_overlap_registers=205	key=1__1002585__1__1__1002870__1__9____251__251__0__0	max_left=174	max_left_minus=174	max_left_plus=110	max_min_left=96	max_min_left_minus=18	max_min_left_plus=96	max_min_right=67	max_min_right_minus=67	max_min_right_plus=44	max_pos_hash_score=412	max_right=146	max_right_minus=108	max_right_plus=146	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=4.281e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.11	side_1_overlap=9	side_1_possible_overlap_registers=214	side_1_read_count=98	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.00	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=85	side_2_redundant=0	total_non_overlap_reads=4
JC	5232	.	1	1061944	-1	1	1062196	-1	0	alignment_overlap=4	coverage_minus=3	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=5.282e-02	junction_possible_overlap_registers=210	key=1__1061944__-1__1__1062200__-1__4____251__251__0__0	max_left=241	max_left_minus=241	max_left_plus=96	max_min_left=97	max_min_left_minus=97	max_min_left_plus=96	max_min_right=18	max_min_right_minus=18	max_min_right_plus=0	max_pos_hash_score=422	max_right=163	max_right_minus=149	max_right_plus=163	neg_log10_pos_hash_p_value=6.4	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=5.282e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.01	side_1_overlap=4	side_1_possible_overlap_registers=214	side_1_read_count=89	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.06	side_2_overlap=0	side_2_possible_overlap_registers=210	side_2_read_count=92	side_2_redundant=0	total_non_overlap_reads=5
JC	5233	.	1	1064606	1	1	1064993	1	0	alignment_overlap=9	coverage_minus=3	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=5.748e-02	junction_possible_overlap_registers=205	key=1__1064606__1__1__1064984__1__9____251__251__0__0	max_left=210	max_left_minus=210	max_left_plus=165	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=110	max_min_right_minus=110	max_min_right_plus=86	max_pos_hash_score=412	max_right=110	max_right_minus=110	max_right_plus=86	neg_log10_pos_hash_p_value=6.3	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=5.748e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.14	side_1_overlap=9	side_1_possible_overlap_registers=214	side_1_read_count=101	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.18	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=100	side_2_redundant=0	total_non_overlap_reads=6
JC	5234	.	1	1079363	1	1	1079368	-1	-15	alignment_overlap=-15	coverage_minus=66	coverage_plus=32	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=199	key=1__1079363__1__1__1079368__-1__-15__ACTTAAAATCGGCAA__251__251__0__1	max_left=234	max_left_minus=234	max_left_plus=209	max_min_left=108	max_min_left_minus=107	max_min_left_plus=108	max_min_right=116	max_min_right_minus=116	max_min_right_plus=114	max_pos_hash_score=400	max_right=235	max_right_minus=235	max_right_plus=208	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.19	new_junction_read_count=98	polymorphism_frequency=9.906e-01	pos_hash_score=71	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.01	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=98	unique_read_sequence=ACTTAAAATCGGCAA
JC	5235	.	1	1094004	1	1	1094696	1	0	alignment_overlap=7	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.005e-02	junction_possible_overlap_registers=207	key=1__1094004__1__1__1094689__1__7____251__251__0__0	max_left=156	max_left_minus=156	max_left_plus=70	max_min_left=70	max_min_left_minus=0	max_min_left_plus=70	max_min_right=88	max_min_right_minus=88	max_min_right_plus=0	max_pos_hash_score=416	max_right=195	max_right_minus=88	max_right_plus=195	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.005e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.14	side_1_overlap=7	side_1_possible_overlap_registers=214	side_1_read_count=101	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.12	side_2_overlap=0	side_2_possible_overlap_registers=207	side_2_read_count=96	side_2_redundant=0	total_non_overlap_reads=3
JC	5236	.	1	1104126	1	1	1104372	1	0	alignment_overlap=11	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.238e-02	junction_possible_overlap_registers=203	key=1__1104126__1__1__1104361__1__11____251__251__0__0	max_left=170	max_left_minus=170	max_left_plus=170	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=83	max_min_right_minus=69	max_min_right_plus=83	max_pos_hash_score=408	max_right=83	max_right_minus=69	max_right_plus=83	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.238e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.04	side_1_overlap=11	side_1_possible_overlap_registers=214	side_1_read_count=92	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.10	side_2_overlap=0	side_2_possible_overlap_registers=203	side_2_read_count=92	side_2_redundant=0	total_non_overlap_reads=3
JC	5237	.	1	1110332	1	1	1110459	1	0	alignment_overlap=5	coverage_minus=6	coverage_plus=0	flanking_left=251	flanking_right=251	frequency=5.864e-02	junction_possible_overlap_registers=209	key=1__1110332__1__1__1110454__1__5____251__251__0__0	max_left=119	max_left_minus=119	max_left_plus=0	max_min_left=117	max_min_left_minus=117	max_min_left_plus=0	max_min_right=59	max_min_right_minus=59	max_min_right_plus=0	max_pos_hash_score=420	max_right=129	max_right_minus=129	max_right_plus=0	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=5.864e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.14	side_1_overlap=5	side_1_possible_overlap_registers=214	side_1_read_count=101	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.09	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=94	side_2_redundant=0	total_non_overlap_reads=6
JC	5238	.	1	1110336	-1	1	1110453	-1	0	alignment_overlap=5	coverage_minus=2	coverage_plus=4	flanking_left=251	flanking_right=251	frequency=5.754e-02	junction_possible_overlap_registers=209	key=1__1110336__-1__1__1110458__-1__5____251__251__0__0	max_left=164	max_left_minus=124	max_left_plus=164	max_min_left=63	max_min_left_minus=58	max_min_left_plus=63	max_min_right=119	max_min_right_minus=119	max_min_right_plus=119	max_pos_hash_score=420	max_right=119	max_right_minus=119	max_right_plus=119	neg_log10_pos_hash_p_value=6.8	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=5.754e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.19	side_1_overlap=5	side_1_possible_overlap_registers=214	side_1_read_count=105	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.09	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=94	side_2_redundant=0	total_non_overlap_reads=6
JC	5239	.	1	1128795	-1	1	1129723	-1	0	alignment_overlap=3	coverage_minus=12	coverage_plus=13	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=211	key=1__1128795__-1__1__1129726__-1__3____251__251__0__0	max_left=215	max_left_minus=172	max_left_plus=215	max_min_left=91	max_min_left_minus=91	max_min_left_plus=87	max_min_right=76	max_min_right_minus=76	max_min_right_plus=57	max_pos_hash_score=424	max_right=237	max_right_minus=233	max_right_plus=237	neg_log10_pos_hash_p_value=2.8	new_junction_coverage=0.61	new_junction_read_count=53	polymorphism_frequency=1.000e+00	pos_hash_score=19	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=3	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=211	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=25
JC	5240	.	1	1130883	-1	1	1131552	1	-3	alignment_overlap=-3	coverage_minus=3	coverage_plus=5	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=211	key=1__1130883__-1__1__1131552__1__-3__CGA__251__251__0__0	max_left=80	max_left_minus=40	max_left_plus=80	max_min_left=56	max_min_left_minus=40	max_min_left_plus=56	max_min_right=50	max_min_right_minus=21	max_min_right_plus=50	max_pos_hash_score=424	max_right=208	max_right_minus=208	max_right_plus=64	neg_log10_pos_hash_p_value=5.6	new_junction_coverage=0.11	new_junction_read_count=10	polymorphism_frequency=1.000e+00	pos_hash_score=7	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=8	unique_read_sequence=CGA
JC	5241	.	1	1143890	-1	1	1143891	1	-5	alignment_overlap=-5	coverage_minus=34	coverage_plus=19	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=209	key=1__1143890__-1__1__1143891__1__-5__CCTCA__251__251__0__0	max_left=224	max_left_minus=217	max_left_plus=224	max_min_left=122	max_min_left_minus=122	max_min_left_plus=77	max_min_right=119	max_min_right_minus=119	max_min_right_plus=77	max_pos_hash_score=374	max_right=244	max_right_minus=244	max_right_plus=209	neg_log10_pos_hash_p_value=0.8	new_junction_coverage=0.67	new_junction_read_count=58	polymorphism_frequency=9.333e-01	pos_hash_score=37	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=23	side_1_coverage=0.05	side_1_overlap=0	side_1_possible_overlap_registers=191	side_1_read_count=4	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.05	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=4	side_2_redundant=0	total_non_overlap_reads=53	unique_read_sequence=CCTCA
JC	5242	.	1	1144140	-1	1	1144141	1	-3	alignment_overlap=-3	coverage_minus=21	coverage_plus=27	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=211	key=1__1144140__-1__1__1144141__1__-3__TTA__251__251__0__0	max_left=239	max_left_minus=239	max_left_plus=234	max_min_left=123	max_min_left_minus=123	max_min_left_plus=105	max_min_right=118	max_min_right_minus=75	max_min_right_plus=118	max_pos_hash_score=416	max_right=230	max_right_minus=230	max_right_plus=230	neg_log10_pos_hash_p_value=1.0	new_junction_coverage=0.54	new_junction_read_count=47	polymorphism_frequency=1.000e+00	pos_hash_score=37	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=4	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=210	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=48	unique_read_sequence=TTA
JC	5243	.	1	1146263	-1	1	1149809	1	0	alignment_overlap=5	coverage_minus=39	coverage_plus=33	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=209	key=1__1146263__-1__1__1149804__1__5____251__251__0__0	max_left=235	max_left_minus=235	max_left_plus=232	max_min_left=119	max_min_left_minus=116	max_min_left_plus=119	max_min_right=114	max_min_right_minus=109	max_min_right_plus=114	max_pos_hash_score=420	max_right=243	max_right_minus=243	max_right_plus=236	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=0.85	new_junction_read_count=73	polymorphism_frequency=1.000e+00	pos_hash_score=44	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=5	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=72
JC	5244	.	1	1166874	-1	1	1166924	-1	0	alignment_overlap=22	coverage_minus=1	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=5.327e-02	junction_possible_overlap_registers=192	key=1__1166874__-1__1__1166946__-1__22____251__251__0__0	max_left=177	max_left_minus=157	max_left_plus=177	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=51	max_min_right_minus=45	max_min_right_plus=51	max_pos_hash_score=386	max_right=51	max_right_minus=45	max_right_plus=51	neg_log10_pos_hash_p_value=6.5	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=5.327e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.86	side_1_overlap=22	side_1_possible_overlap_registers=214	side_1_read_count=76	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.93	side_2_overlap=0	side_2_possible_overlap_registers=192	side_2_read_count=74	side_2_redundant=0	total_non_overlap_reads=4
JC	5245	.	1	1212702	-1	1	1212974	-1	0	alignment_overlap=8	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.947e-02	junction_possible_overlap_registers=206	key=1__1212702__-1__1__1212982__-1__8____251__251__0__0	max_left=127	max_left_minus=28	max_left_plus=127	max_min_left=28	max_min_left_minus=28	max_min_left_plus=0	max_min_right=79	max_min_right_minus=0	max_min_right_plus=79	max_pos_hash_score=414	max_right=134	max_right_minus=134	max_right_plus=79	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.947e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.60	side_1_overlap=8	side_1_possible_overlap_registers=214	side_1_read_count=53	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.12	side_2_overlap=0	side_2_possible_overlap_registers=206	side_2_read_count=95	side_2_redundant=0	total_non_overlap_reads=3
JC	5246	.	1	1230833	-1	1	1230834	1	-5	alignment_overlap=-5	coverage_minus=14	coverage_plus=6	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=209	key=1__1230833__-1__1__1230834__1__-5__CTTGC__251__251__0__0	max_left=217	max_left_minus=179	max_left_plus=217	max_min_left=121	max_min_left_minus=114	max_min_left_plus=121	max_min_right=104	max_min_right_minus=104	max_min_right_plus=56	max_pos_hash_score=376	max_right=151	max_right_minus=151	max_right_plus=139	neg_log10_pos_hash_p_value=2.9	new_junction_coverage=0.28	new_junction_read_count=24	polymorphism_frequency=1.000e+00	pos_hash_score=16	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=22	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=192	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=20	unique_read_sequence=CTTGC
JC	5247	.	1	1230968	-1	1	1230969	1	-9	alignment_overlap=-9	coverage_minus=23	coverage_plus=25	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=205	key=1__1230968__-1__1__1230969__1__-9__CAACTTACC__251__251__0__0	max_left=201	max_left_minus=201	max_left_plus=175	max_min_left=117	max_min_left_minus=117	max_min_left_plus=111	max_min_right=120	max_min_right_minus=120	max_min_right_plus=96	max_pos_hash_score=380	max_right=234	max_right_minus=234	max_right_plus=216	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.52	new_junction_read_count=44	polymorphism_frequency=1.000e+00	pos_hash_score=42	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=16	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=198	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=48	unique_read_sequence=CAACTTACC
JC	5248	.	1	1232955	1	1	1233168	1	0	alignment_overlap=6	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=5.067e-02	junction_possible_overlap_registers=208	key=1__1232955__1__1__1233162__1__6____251__251__0__0	max_left=102	max_left_minus=102	max_left_plus=64	max_min_left=102	max_min_left_minus=102	max_min_left_plus=64	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=418	max_right=187	max_right_minus=143	max_right_plus=187	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=5.067e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.65	side_1_overlap=6	side_1_possible_overlap_registers=214	side_1_read_count=57	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.66	side_2_overlap=0	side_2_possible_overlap_registers=208	side_2_read_count=57	side_2_redundant=0	total_non_overlap_reads=3
JC	5249	.	1	1234393	-1	1	1234997	1	0	alignment_overlap=2	coverage_minus=17	coverage_plus=18	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=212	key=1__1234393__-1__1__1234995__1__2____251__251__0__0	max_left=235	max_left_minus=235	max_left_plus=230	max_min_left=115	max_min_left_minus=115	max_min_left_plus=109	max_min_right=120	max_min_right_minus=120	max_min_right_plus=70	max_pos_hash_score=426	max_right=206	max_right_minus=176	max_right_plus=206	neg_log10_pos_hash_p_value=1.5	new_junction_coverage=0.40	new_junction_read_count=35	polymorphism_frequency=1.000e+00	pos_hash_score=31	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=2	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=212	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=35
JC	5250	.	1	1239637	-1	1	1240487	1	0	alignment_overlap=2	coverage_minus=30	coverage_plus=36	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=212	key=1__1239637__-1__1__1240485__1__2____251__251__0__0	max_left=242	max_left_minus=242	max_left_plus=242	max_min_left=124	max_min_left_minus=116	max_min_left_plus=124	max_min_right=120	max_min_right_minus=120	max_min_right_plus=91	max_pos_hash_score=426	max_right=246	max_right_minus=226	max_right_plus=246	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.75	new_junction_read_count=66	polymorphism_frequency=1.000e+00	pos_hash_score=50	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=2	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=212	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=66
JC	5251	.	1	1240557	-1	1	1240749	-1	0	alignment_overlap=9	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=7.222e-02	junction_possible_overlap_registers=205	key=1__1240557__-1__1__1240758__-1__9____251__251__0__0	max_left=64	max_left_minus=57	max_left_plus=64	max_min_left=64	max_min_left_minus=57	max_min_left_plus=64	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=412	max_right=185	max_right_minus=185	max_right_plus=138	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=7.222e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.25	side_1_overlap=9	side_1_possible_overlap_registers=214	side_1_read_count=22	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.66	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=56	side_2_redundant=0	total_non_overlap_reads=3
JC	5252	.	1	1256049	-1	1	2001349	1	0	alignment_overlap=1	coverage_minus=24	coverage_plus=26	flanking_left=251	flanking_right=251	frequency=7.034e-01	junction_possible_overlap_registers=213	key=1__1256049__-1__1__2001348__1__1____251__251__0__0	max_left=213	max_left_minus=213	max_left_plus=187	max_min_left=123	max_min_left_minus=107	max_min_left_plus=123	max_min_right=115	max_min_right_minus=115	max_min_right_plus=107	max_pos_hash_score=428	max_right=240	max_right_minus=240	max_right_plus=217	neg_log10_pos_hash_p_value=1.0	new_junction_coverage=0.59	new_junction_read_count=52	polymorphism_frequency=7.034e-01	pos_hash_score=38	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.36	side_1_overlap=1	side_1_possible_overlap_registers=214	side_1_read_count=32	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.14	side_2_overlap=0	side_2_possible_overlap_registers=213	side_2_read_count=12	side_2_redundant=0	total_non_overlap_reads=50
JC	5253	.	1	1278402	-1	1	1278413	1	0	alignment_overlap=1	coverage_minus=37	coverage_plus=28	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=213	key=1__1278402__-1__1__1278412__1__1____251__251__0__0	max_left=247	max_left_minus=229	max_left_plus=247	max_min_left=116	max_min_left_minus=116	max_min_left_plus=104	max_min_right=122	max_min_right_minus=114	max_min_right_plus=122	max_pos_hash_score=428	max_right=238	max_right_minus=235	max_right_plus=238	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.75	new_junction_read_count=66	polymorphism_frequency=1.000e+00	pos_hash_score=51	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=1	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=213	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=65
JC	5254	.	1	1281175	-1	1	1281775	-1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=4.025e-02	junction_possible_overlap_registers=204	key=1__1281175__-1__1__1281785__-1__10____251__251__0__0	max_left=226	max_left_minus=146	max_left_plus=226	max_min_left=92	max_min_left_minus=92	max_min_left_plus=0	max_min_right=94	max_min_right_minus=94	max_min_right_plus=14	max_pos_hash_score=410	max_right=148	max_right_minus=148	max_right_plus=14	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=4.025e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.71	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=63	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.99	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=83	side_2_redundant=0	total_non_overlap_reads=3
JC	5255	.	1	1293121	-1	1	1293859	1	-25	alignment_overlap=-25	coverage_minus=8	coverage_plus=12	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=189	key=1__1293121__-1__1__1293859__1__-25__TACGTGCTTGAATTTATGCTTACAT__251__251__0__0	max_left=221	max_left_minus=221	max_left_plus=203	max_min_left=62	max_min_left_minus=18	max_min_left_plus=62	max_min_right=100	max_min_right_minus=100	max_min_right_plus=43	max_pos_hash_score=380	max_right=224	max_right_minus=163	max_right_plus=224	neg_log10_pos_hash_p_value=2.5	new_junction_coverage=0.35	new_junction_read_count=27	polymorphism_frequency=9.839e-01	pos_hash_score=19	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.01	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=20	unique_read_sequence=TACGTGCTTGAATTTATGCTTACAT
JC	5256	.	1	1316219	-1	1	1316224	1	0	alignment_overlap=5	coverage_minus=44	coverage_plus=36	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=209	key=1__1316219__-1__1__1316219__1__5____251__251__0__0	max_left=238	max_left_minus=238	max_left_plus=212	max_min_left=94	max_min_left_minus=94	max_min_left_plus=83	max_min_right=120	max_min_right_minus=120	max_min_right_plus=66	max_pos_hash_score=420	max_right=245	max_right_minus=245	max_right_plus=242	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.93	new_junction_read_count=80	polymorphism_frequency=1.000e+00	pos_hash_score=56	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=5	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=80
JC	5257	.	1	1338528	-1	1	1338529	1	-3	alignment_overlap=-3	coverage_minus=61	coverage_plus=53	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=211	key=1__1338528__-1__1__1338529__1__-3__TTT__251__251__0__0	max_left=225	max_left_minus=225	max_left_plus=224	max_min_left=123	max_min_left_minus=123	max_min_left_plus=116	max_min_right=124	max_min_right_minus=124	max_min_right_plus=117	max_pos_hash_score=424	max_right=233	max_right_minus=233	max_right_plus=230	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.32	new_junction_read_count=115	polymorphism_frequency=1.000e+00	pos_hash_score=73	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=114	unique_read_sequence=TTT
JC	5258	.	1	1343697	1	1	1343693	-1	0	alignment_overlap=6	coverage_minus=45	coverage_plus=51	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=208	key=1__1343697__1__1__1343699__-1__6____251__251__0__0	max_left=242	max_left_minus=242	max_left_plus=242	max_min_left=122	max_min_left_minus=122	max_min_left_plus=99	max_min_right=117	max_min_right_minus=97	max_min_right_plus=117	max_pos_hash_score=418	max_right=242	max_right_minus=242	max_right_plus=234	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.12	new_junction_read_count=96	polymorphism_frequency=1.000e+00	pos_hash_score=65	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=6	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=208	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=96
JC	5259	.	1	1357130	-1	1	1357739	-1	0	alignment_overlap=6	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.517e-02	junction_possible_overlap_registers=208	key=1__1357130__-1__1__1357745__-1__6____251__251__0__0	max_left=222	max_left_minus=222	max_left_plus=144	max_min_left=108	max_min_left_minus=0	max_min_left_plus=108	max_min_right=100	max_min_right_minus=23	max_min_right_plus=100	max_pos_hash_score=418	max_right=127	max_right_minus=23	max_right_plus=127	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=3.517e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.96	side_1_overlap=6	side_1_possible_overlap_registers=214	side_1_read_count=85	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.96	side_2_overlap=0	side_2_possible_overlap_registers=208	side_2_read_count=82	side_2_redundant=0	total_non_overlap_reads=3
JC	5260	.	1	1365995	-1	1	1366503	-1	0	alignment_overlap=10	coverage_minus=0	coverage_plus=5	flanking_left=251	flanking_right=251	frequency=6.695e-02	junction_possible_overlap_registers=204	key=1__1365995__-1__1__1366513__-1__10____251__251__0__0	max_left=168	max_left_minus=0	max_left_plus=168	max_min_left=106	max_min_left_minus=0	max_min_left_plus=106	max_min_right=73	max_min_right_minus=0	max_min_right_plus=73	max_pos_hash_score=410	max_right=135	max_right_minus=0	max_right_plus=135	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=6.695e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.88	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=78	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.77	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=65	side_2_redundant=0	total_non_overlap_reads=5
JC	5261	.	1	1397118	-1	1	1397122	1	0	alignment_overlap=2	coverage_minus=22	coverage_plus=24	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=212	key=1__1397118__-1__1__1397120__1__2____251__251__0__0	max_left=247	max_left_minus=244	max_left_plus=247	max_min_left=124	max_min_left_minus=104	max_min_left_plus=124	max_min_right=120	max_min_right_minus=120	max_min_right_plus=119	max_pos_hash_score=426	max_right=242	max_right_minus=201	max_right_plus=242	neg_log10_pos_hash_p_value=0.8	new_junction_coverage=0.53	new_junction_read_count=46	polymorphism_frequency=1.000e+00	pos_hash_score=41	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=2	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=212	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=46
JC	5262	.	1	1404506	-1	1	1405454	1	-53	alignment_overlap=-53	coverage_minus=22	coverage_plus=27	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=161	key=1__1404506__-1__1__1405454__1__-53__CCGATCGGATTATGGTCATGAAAAAAGGCGTGATCGAACAAATCGATACGCCG__251__251__0__0	max_left=189	max_left_minus=189	max_left_plus=188	max_min_left=97	max_min_left_minus=97	max_min_left_plus=95	max_min_right=97	max_min_right_minus=92	max_min_right_plus=97	max_pos_hash_score=324	max_right=186	max_right_minus=186	max_right_plus=154	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.74	new_junction_read_count=49	polymorphism_frequency=1.000e+00	pos_hash_score=37	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=49	unique_read_sequence=CCGATCGGATTATGGTCATGAAAAAAGGCGTGATCGAACAAATCGATACGCCG
JC	5263	.	1	1421894	1	1	1422137	1	0	alignment_overlap=9	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.842e-02	junction_possible_overlap_registers=205	key=1__1421894__1__1__1422128__1__9____251__251__0__0	max_left=200	max_left_minus=127	max_left_plus=200	max_min_left=70	max_min_left_minus=0	max_min_left_plus=70	max_min_right=115	max_min_right_minus=115	max_min_right_plus=41	max_pos_hash_score=412	max_right=172	max_right_minus=115	max_right_plus=172	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.842e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.76	side_1_overlap=9	side_1_possible_overlap_registers=214	side_1_read_count=67	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.02	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=86	side_2_redundant=0	total_non_overlap_reads=3
JC	5264	.	1	1483048	-1	1	1483980	-1	0	alignment_overlap=7	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=3.980e-02	junction_possible_overlap_registers=207	key=1__1483048__-1__1__1483987__-1__7____251__251__0__0	max_left=108	max_left_minus=56	max_left_plus=108	max_min_left=108	max_min_left_minus=56	max_min_left_plus=108	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=416	max_right=187	max_right_minus=187	max_right_plus=136	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.980e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.78	side_1_overlap=7	side_1_possible_overlap_registers=214	side_1_read_count=69	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.91	side_2_overlap=0	side_2_possible_overlap_registers=207	side_2_read_count=78	side_2_redundant=0	total_non_overlap_reads=3
JC	5265	.	1	1484238	1	1	1484361	1	0	alignment_overlap=11	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=3.059e-02	junction_possible_overlap_registers=203	key=1__1484238__1__1__1484350__1__11____251__251__0__0	max_left=103	max_left_minus=103	max_left_plus=41	max_min_left=103	max_min_left_minus=103	max_min_left_plus=41	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=408	max_right=194	max_right_minus=136	max_right_plus=194	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.059e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.08	side_1_overlap=11	side_1_possible_overlap_registers=214	side_1_read_count=95	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.19	side_2_overlap=0	side_2_possible_overlap_registers=203	side_2_read_count=100	side_2_redundant=0	total_non_overlap_reads=3
JC	5266	.	1	1613589	1	1	1613937	1	0	alignment_overlap=12	coverage_minus=0	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=4.250e-02	junction_possible_overlap_registers=202	key=1__1613589__1__1__1613925__1__12____251__251__0__0	max_left=228	max_left_minus=0	max_left_plus=228	max_min_left=106	max_min_left_minus=0	max_min_left_plus=106	max_min_right=11	max_min_right_minus=0	max_min_right_plus=11	max_pos_hash_score=406	max_right=134	max_right_minus=0	max_right_plus=134	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=4.250e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.77	side_1_overlap=12	side_1_possible_overlap_registers=214	side_1_read_count=68	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.85	side_2_overlap=0	side_2_possible_overlap_registers=202	side_2_read_count=71	side_2_redundant=0	total_non_overlap_reads=3
JC	5267	.	1	1618800	-1	1	1620092	1	0	alignment_overlap=2	coverage_minus=56	coverage_plus=37	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=212	key=1__1618800__-1__1__1620090__1__2____251__251__0__0	max_left=245	max_left_minus=238	max_left_plus=245	max_min_left=124	max_min_left_minus=116	max_min_left_plus=124	max_min_right=123	max_min_right_minus=123	max_min_right_plus=117	max_pos_hash_score=426	max_right=234	max_right_minus=234	max_right_plus=228	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.10	new_junction_read_count=96	polymorphism_frequency=1.000e+00	pos_hash_score=67	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=2	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=212	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=93
JC	5268	.	1	1637722	-1	1	1637892	-1	0	alignment_overlap=6	coverage_minus=1	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=6.056e-02	junction_possible_overlap_registers=208	key=1__1637722__-1__1__1637898__-1__6____251__251__0__0	max_left=188	max_left_minus=148	max_left_plus=188	max_min_left=108	max_min_left_minus=0	max_min_left_plus=108	max_min_right=97	max_min_right_minus=97	max_min_right_plus=23	max_pos_hash_score=418	max_right=138	max_right_minus=97	max_right_plus=138	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=6.056e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.77	side_1_overlap=6	side_1_possible_overlap_registers=214	side_1_read_count=68	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.68	side_2_overlap=0	side_2_possible_overlap_registers=208	side_2_read_count=58	side_2_redundant=0	total_non_overlap_reads=4
JC	5269	.	1	1637755	-1	1	1637862	-1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=6.025e-02	junction_possible_overlap_registers=204	key=1__1637755__-1__1__1637872__-1__10____251__251__0__0	max_left=133	max_left_minus=101	max_left_plus=133	max_min_left=101	max_min_left_minus=101	max_min_left_plus=68	max_min_right=108	max_min_right_minus=0	max_min_right_plus=108	max_pos_hash_score=410	max_right=108	max_right_minus=108	max_right_plus=108	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=6.025e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.78	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=69	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.70	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=59	side_2_redundant=0	total_non_overlap_reads=4
JC	5270	.	1	1661156	-1	1	1661334	-1	0	alignment_overlap=6	coverage_minus=1	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=3.504e-02	junction_possible_overlap_registers=208	key=1__1661156__-1__1__1661340__-1__6____251__251__0__0	max_left=198	max_left_minus=84	max_left_plus=198	max_min_left=84	max_min_left_minus=84	max_min_left_plus=74	max_min_right=47	max_min_right_minus=0	max_min_right_plus=47	max_pos_hash_score=418	max_right=179	max_right_minus=160	max_right_plus=179	neg_log10_pos_hash_p_value=6.8	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=3.504e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.09	side_1_overlap=6	side_1_possible_overlap_registers=214	side_1_read_count=96	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.48	side_2_overlap=0	side_2_possible_overlap_registers=208	side_2_read_count=127	side_2_redundant=0	total_non_overlap_reads=4
JC	5271	.	1	1664458	-1	1	1664829	-1	0	alignment_overlap=10	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=2.938e-02	junction_possible_overlap_registers=204	key=1__1664458__-1__1__1664839__-1__10____251__251__0__0	max_left=165	max_left_minus=165	max_left_plus=50	max_min_left=50	max_min_left_minus=0	max_min_left_plus=50	max_min_right=75	max_min_right_minus=75	max_min_right_plus=0	max_pos_hash_score=410	max_right=208	max_right_minus=75	max_right_plus=208	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=2.938e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.17	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=103	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.19	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=100	side_2_redundant=0	total_non_overlap_reads=3
JC	5272	.	1	1674379	-1	1	1674484	-1	0	alignment_overlap=10	coverage_minus=0	coverage_plus=4	flanking_left=251	flanking_right=251	frequency=4.818e-02	junction_possible_overlap_registers=204	key=1__1674379__-1__1__1674494__-1__10____251__251__0__0	max_left=164	max_left_minus=0	max_left_plus=164	max_min_left=45	max_min_left_minus=0	max_min_left_plus=45	max_min_right=105	max_min_right_minus=0	max_min_right_plus=105	max_pos_hash_score=410	max_right=105	max_right_minus=0	max_right_plus=105	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=4.818e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.96	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=85	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.91	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=77	side_2_redundant=0	total_non_overlap_reads=4
JC	5273	.	1	1678921	1	1	1680049	1	0	alignment_overlap=10	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=4.005e-02	junction_possible_overlap_registers=204	key=1__1678921__1__1__1680039__1__10____251__251__0__0	max_left=168	max_left_minus=168	max_left_plus=150	max_min_left=77	max_min_left_minus=0	max_min_left_plus=77	max_min_right=46	max_min_right_minus=46	max_min_right_plus=46	max_pos_hash_score=410	max_right=164	max_right_minus=46	max_right_plus=164	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=4.005e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.77	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=68	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.94	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=79	side_2_redundant=0	total_non_overlap_reads=3
JC	5274	.	1	1723289	1	1	1723457	1	0	alignment_overlap=5	coverage_minus=2	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.471e-02	junction_possible_overlap_registers=209	key=1__1723289__1__1__1723452__1__5____251__251__0__0	max_left=118	max_left_minus=59	max_left_plus=118	max_min_left=59	max_min_left_minus=59	max_min_left_plus=59	max_min_right=106	max_min_right_minus=0	max_min_right_plus=106	max_pos_hash_score=420	max_right=187	max_right_minus=187	max_right_plus=107	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=3.471e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.21	side_1_overlap=5	side_1_possible_overlap_registers=214	side_1_read_count=107	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.37	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=118	side_2_redundant=0	total_non_overlap_reads=4
JC	5275	.	1	1727641	1	1	1727655	-1	-6	alignment_overlap=-6	coverage_minus=45	coverage_plus=44	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=208	key=1__1727641__1__1__1727655__-1__-6__TTTTTC__251__251__0__1	max_left=243	max_left_minus=243	max_left_plus=231	max_min_left=116	max_min_left_minus=116	max_min_left_plus=113	max_min_right=121	max_min_right_minus=121	max_min_right_plus=120	max_pos_hash_score=418	max_right=238	max_right_minus=232	max_right_plus=238	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.04	new_junction_read_count=89	polymorphism_frequency=9.290e-01	pos_hash_score=62	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.08	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=7	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=89	unique_read_sequence=TTTTTC
JC	5276	.	1	1741329	1	1	1741504	1	0	alignment_overlap=12	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=3.896e-02	junction_possible_overlap_registers=202	key=1__1741329__1__1__1741492__1__12____251__251__0__0	max_left=117	max_left_minus=117	max_left_plus=87	max_min_left=117	max_min_left_minus=117	max_min_left_plus=87	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=406	max_right=152	max_right_minus=146	max_right_plus=152	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.896e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.80	side_1_overlap=12	side_1_possible_overlap_registers=214	side_1_read_count=71	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.97	side_2_overlap=0	side_2_possible_overlap_registers=202	side_2_read_count=81	side_2_redundant=0	total_non_overlap_reads=3
JC	5277	.	1	1770863	1	1	1771017	1	0	alignment_overlap=13	coverage_minus=5	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=9.445e-02	junction_possible_overlap_registers=201	key=1__1770863__1__1__1771004__1__13____251__251__0__0	max_left=82	max_left_minus=43	max_left_plus=82	max_min_left=82	max_min_left_minus=43	max_min_left_plus=82	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=404	max_right=209	max_right_minus=209	max_right_plus=160	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=7	polymorphism_frequency=9.445e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.70	side_1_overlap=13	side_1_possible_overlap_registers=214	side_1_read_count=62	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.92	side_2_overlap=0	side_2_possible_overlap_registers=201	side_2_read_count=76	side_2_redundant=0	total_non_overlap_reads=7
JC	5278	.	1	1782829	-1	1	1782830	1	-3	alignment_overlap=-3	coverage_minus=47	coverage_plus=38	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=211	key=1__1782829__-1__1__1782830__1__-3__TAT__251__251__0__0	max_left=243	max_left_minus=233	max_left_plus=243	max_min_left=119	max_min_left_minus=102	max_min_left_plus=119	max_min_right=114	max_min_right_minus=113	max_min_right_plus=114	max_pos_hash_score=416	max_right=247	max_right_minus=247	max_right_plus=233	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=0.88	new_junction_read_count=77	polymorphism_frequency=1.000e+00	pos_hash_score=64	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=4	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=210	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=85	unique_read_sequence=TAT
JC	5279	.	1	1814863	1	1	1815167	1	0	alignment_overlap=8	coverage_minus=2	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=5.616e-02	junction_possible_overlap_registers=206	key=1__1814863__1__1__1815159__1__8____251__251__0__0	max_left=147	max_left_minus=147	max_left_plus=122	max_min_left=1	max_min_left_minus=1	max_min_left_plus=1	max_min_right=122	max_min_right_minus=97	max_min_right_plus=122	max_pos_hash_score=414	max_right=240	max_right_minus=97	max_right_plus=240	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=5.616e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.77	side_1_overlap=8	side_1_possible_overlap_registers=214	side_1_read_count=68	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.81	side_2_overlap=0	side_2_possible_overlap_registers=206	side_2_read_count=69	side_2_redundant=0	total_non_overlap_reads=4
JC	5280	.	1	1824928	-1	1	1824932	1	0	alignment_overlap=1	coverage_minus=11	coverage_plus=10	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=213	key=1__1824928__-1__1__1824931__1__1____251__251__0__0	max_left=170	max_left_minus=170	max_left_plus=67	max_min_left=110	max_min_left_minus=110	max_min_left_plus=67	max_min_right=83	max_min_right_minus=83	max_min_right_plus=0	max_pos_hash_score=428	max_right=246	max_right_minus=241	max_right_plus=246	neg_log10_pos_hash_p_value=2.9	new_junction_coverage=0.24	new_junction_read_count=21	polymorphism_frequency=1.000e+00	pos_hash_score=19	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=1	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=213	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=21
JC	5281	.	1	1833971	-1	1	1834808	1	0	alignment_overlap=2	coverage_minus=26	coverage_plus=37	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=212	key=1__1833971__-1__1__1834806__1__2____251__251__0__0	max_left=246	max_left_minus=226	max_left_plus=246	max_min_left=120	max_min_left_minus=120	max_min_left_plus=104	max_min_right=121	max_min_right_minus=121	max_min_right_plus=121	max_pos_hash_score=426	max_right=247	max_right_minus=221	max_right_plus=247	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=0.72	new_junction_read_count=63	polymorphism_frequency=1.000e+00	pos_hash_score=43	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=2	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=212	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=63
JC	5282	.	1	1844498	-1	1	1844618	-1	0	alignment_overlap=8	coverage_minus=1	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=5.909e-02	junction_possible_overlap_registers=206	key=1__1844498__-1__1__1844626__-1__8____251__251__0__0	max_left=187	max_left_minus=165	max_left_plus=187	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=113	max_min_right_minus=54	max_min_right_plus=113	max_pos_hash_score=414	max_right=113	max_right_minus=54	max_right_plus=113	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=5.909e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.79	side_1_overlap=8	side_1_possible_overlap_registers=214	side_1_read_count=70	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.71	side_2_overlap=0	side_2_possible_overlap_registers=206	side_2_read_count=60	side_2_redundant=0	total_non_overlap_reads=4
JC	5283	.	1	1875515	-1	1	1875516	1	-5	alignment_overlap=-5	coverage_minus=53	coverage_plus=52	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=209	key=1__1875515__-1__1__1875516__1__-5__CGCCC__251__251__0__0	max_left=230	max_left_minus=230	max_left_plus=219	max_min_left=122	max_min_left_minus=111	max_min_left_plus=122	max_min_right=121	max_min_right_minus=121	max_min_right_plus=111	max_pos_hash_score=400	max_right=243	max_right_minus=243	max_right_plus=216	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.19	new_junction_read_count=103	polymorphism_frequency=9.904e-01	pos_hash_score=68	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=10	side_1_coverage=0.01	side_1_overlap=0	side_1_possible_overlap_registers=204	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.01	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=1	side_2_redundant=0	total_non_overlap_reads=105	unique_read_sequence=CGCCC
JC	5284	.	1	1877179	-1	1	1878181	1	0	alignment_overlap=5	coverage_minus=37	coverage_plus=39	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=209	key=1__1877179__-1__1__1878176__1__5____251__251__0__0	max_left=243	max_left_minus=243	max_left_plus=238	max_min_left=122	max_min_left_minus=115	max_min_left_plus=122	max_min_right=120	max_min_right_minus=120	max_min_right_plus=116	max_pos_hash_score=420	max_right=242	max_right_minus=242	max_right_plus=240	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.88	new_junction_read_count=76	polymorphism_frequency=1.000e+00	pos_hash_score=59	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=5	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=76
JC	5285	.	1	1914652	1	1	1914647	-1	0	alignment_overlap=5	coverage_minus=52	coverage_plus=60	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=209	key=1__1914652__1__1__1914652__-1__5____251__251__0__0	max_left=230	max_left_minus=230	max_left_plus=191	max_min_left=120	max_min_left_minus=120	max_min_left_plus=117	max_min_right=120	max_min_right_minus=108	max_min_right_plus=120	max_pos_hash_score=420	max_right=242	max_right_minus=239	max_right_plus=242	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.30	new_junction_read_count=112	polymorphism_frequency=1.000e+00	pos_hash_score=74	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=5	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=112
JC	5286	.	1	1919051	-1	1	1919851	-1	0	alignment_overlap=6	coverage_minus=1	coverage_plus=4	flanking_left=251	flanking_right=251	frequency=5.174e-02	junction_possible_overlap_registers=208	key=1__1919051__-1__1__1919857__-1__6____251__251__0__0	max_left=138	max_left_minus=115	max_left_plus=138	max_min_left=65	max_min_left_minus=0	max_min_left_plus=65	max_min_right=107	max_min_right_minus=107	max_min_right_plus=107	max_pos_hash_score=418	max_right=107	max_right_minus=107	max_right_plus=107	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=5.174e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.10	side_1_overlap=6	side_1_possible_overlap_registers=214	side_1_read_count=97	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.04	side_2_overlap=0	side_2_possible_overlap_registers=208	side_2_read_count=89	side_2_redundant=0	total_non_overlap_reads=5
JC	5287	.	1	1940871	-1	1	1940872	1	-8	alignment_overlap=-8	coverage_minus=41	coverage_plus=40	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=206	key=1__1940871__-1__1__1940872__1__-8__GGTCGGTT__251__251__0__0	max_left=226	max_left_minus=226	max_left_plus=217	max_min_left=111	max_min_left_minus=100	max_min_left_plus=111	max_min_right=118	max_min_right_minus=118	max_min_right_plus=99	max_pos_hash_score=414	max_right=235	max_right_minus=235	max_right_plus=217	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.96	new_junction_read_count=82	polymorphism_frequency=1.000e+00	pos_hash_score=58	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=81	unique_read_sequence=GGTCGGTT
JC	5288	.	1	1959714	1	1	1960233	1	0	alignment_overlap=14	coverage_minus=3	coverage_plus=0	flanking_left=251	flanking_right=251	frequency=3.168e-02	junction_possible_overlap_registers=200	key=1__1959714__1__1__1960219__1__14____251__251__0__0	max_left=180	max_left_minus=180	max_left_plus=0	max_min_left=82	max_min_left_minus=82	max_min_left_plus=0	max_min_right=56	max_min_right_minus=56	max_min_right_plus=0	max_pos_hash_score=402	max_right=191	max_right_minus=191	max_right_plus=0	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.168e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.31	side_1_overlap=14	side_1_possible_overlap_registers=214	side_1_read_count=116	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.91	side_2_overlap=0	side_2_possible_overlap_registers=200	side_2_read_count=75	side_2_redundant=0	total_non_overlap_reads=3
JC	5289	.	1	1984459	1	1	1984615	1	-26	alignment_overlap=-26	coverage_minus=4	coverage_plus=4	flanking_left=251	flanking_right=251	frequency=2.086e-01	junction_possible_overlap_registers=188	key=1__1984459__1__1__1984615__1__-26__GCTTATTCTGTGCGGCACTGTTGGCA__251__251__0__0	max_left=224	max_left_minus=219	max_left_plus=224	max_min_left=77	max_min_left_minus=0	max_min_left_plus=77	max_min_right=65	max_min_right_minus=65	max_min_right_plus=11	max_pos_hash_score=378	max_right=148	max_right_minus=65	max_right_plus=148	neg_log10_pos_hash_p_value=4.8	new_junction_coverage=0.14	new_junction_read_count=11	polymorphism_frequency=2.086e-01	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.08	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=95	side_2_redundant=0	total_non_overlap_reads=8	unique_read_sequence=GCTTATTCTGTGCGGCACTGTTGGCA
JC	5290	.	1	2045923	-1	1	2045963	-1	0	alignment_overlap=8	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=2.624e-02	junction_possible_overlap_registers=206	key=1__2045923__-1__1__2045971__-1__8____251__251__0__0	max_left=91	max_left_minus=91	max_left_plus=5	max_min_left=91	max_min_left_minus=91	max_min_left_plus=5	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=414	max_right=238	max_right_minus=190	max_right_plus=238	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=2.624e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.33	side_1_overlap=8	side_1_possible_overlap_registers=214	side_1_read_count=117	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.29	side_2_overlap=0	side_2_possible_overlap_registers=206	side_2_read_count=110	side_2_redundant=0	total_non_overlap_reads=3
JC	5291	.	1	2060600	-1	1	2060601	1	-9	alignment_overlap=-9	coverage_minus=42	coverage_plus=42	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=205	key=1__2060600__-1__1__2060601__1__-9__CCACGCTCA__251__251__0__0	max_left=235	max_left_minus=231	max_left_plus=235	max_min_left=110	max_min_left_minus=109	max_min_left_plus=110	max_min_right=115	max_min_right_minus=115	max_min_right_plus=109	max_pos_hash_score=384	max_right=240	max_right_minus=240	max_right_plus=238	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=0.97	new_junction_read_count=82	polymorphism_frequency=1.000e+00	pos_hash_score=61	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=14	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=200	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=84	unique_read_sequence=CCACGCTCA
JC	5292	.	1	2067671	-1	1	2067672	1	-3	alignment_overlap=-3	coverage_minus=43	coverage_plus=50	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=211	key=1__2067671__-1__1__2067672__1__-3__CAA__251__251__0__0	max_left=240	max_left_minus=232	max_left_plus=240	max_min_left=121	max_min_left_minus=121	max_min_left_plus=112	max_min_right=124	max_min_right_minus=124	max_min_right_plus=119	max_pos_hash_score=412	max_right=245	max_right_minus=234	max_right_plus=245	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.06	new_junction_read_count=92	polymorphism_frequency=1.000e+00	pos_hash_score=67	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=6	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=208	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=93	unique_read_sequence=CAA
JC	5293	.	1	2079015	1	1	2079525	1	0	alignment_overlap=15	coverage_minus=3	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.485e-02	junction_possible_overlap_registers=199	key=1__2079015__1__1__2079510__1__15____251__251__0__0	max_left=184	max_left_minus=184	max_left_plus=71	max_min_left=71	max_min_left_minus=42	max_min_left_plus=71	max_min_right=93	max_min_right_minus=93	max_min_right_plus=0	max_pos_hash_score=400	max_right=194	max_right_minus=194	max_right_plus=165	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=3.485e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.46	side_1_overlap=15	side_1_possible_overlap_registers=214	side_1_read_count=129	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.91	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=157	side_2_redundant=0	total_non_overlap_reads=5
UN	5294	.	1	1	257
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