#=GENOME_DIFF	1.0
#=CREATED	16:39:04 20 Jan 2022
#=PROGRAM	breseq 0.35.4 
#=COMMAND	breseq -j 6 -r /data/p127804/PROJECTS/JanMaarten/Yanyan_202201_SNP/genomes/Aa30S.gbk /data/p127804/PROJECTS/JanMaarten/Yanyan_202201_SNP/fastq/ATCC_S10_L001_R1_001.fastq.gz -o /data/p127804/PROJECTS/JanMaarten/Yanyan_202201_SNP/breseq_results/ATCC_vs_gbk30S
#=REFSEQ	/data/p127804/PROJECTS/JanMaarten/Yanyan_202201_SNP/genomes/Aa30S.gbk
#=READSEQ	/data/p127804/PROJECTS/JanMaarten/Yanyan_202201_SNP/fastq/ATCC_S10_L001_R1_001.fastq.gz
#=CONVERTED-BASES	194754060
#=CONVERTED-READS	902159
#=INPUT-BASES	194778000
#=INPUT-READS	902843
#=MAPPED-BASES	180556884
#=MAPPED-READS	838289
SNP	1	2644	1	1525	A
SNP	2	2645	1	4245	A
SNP	3	2646	1	4364	T
SNP	4	2647	1	7366	G
SNP	5	2648	1	7407	T
SNP	6	2649	1	30947	A
SNP	7	2650	1	32817	T
SNP	8	2651	1	33338	T
SNP	9	2652	1	34062	G
SNP	10	2653	1	34174	G
SNP	11	2654	1	37735	C
SNP	12	2655	1	38675	G
SNP	13	2656	1	41167	A
SNP	14	2657	1	42120	A
SNP	15	2659	1	45809	G
SNP	16	2660	1	48252	T
SNP	17	2661	1	49004	G
SNP	18	2662	1	49917	G
SNP	19	2663	1	53426	T
SNP	20	2664	1	53548	G
SNP	21	2665	1	53712	G
SNP	22	2666	1	54904	C
SNP	23	2667	1	55079	T
SNP	24	2668	1	55611	T
SNP	25	2669	1	55869	C
SNP	26	2670	1	57693	A
SNP	27	2671	1	59976	A
SNP	28	2672	1	62127	C
SNP	29	2673	1	63918	C
SNP	30	2674	1	64134	T
SNP	31	2682	1	68483	C
SNP	32	2683	1	71027	G
SNP	33	2684	1	71362	T
SNP	34	2685	1	71529	A
SNP	35	2686	1	72780	G
SNP	36	2687	1	73738	G
SNP	37	2688	1	74201	C
SNP	38	2689	1	74205	G
SNP	39	2696	1	77684	A
SNP	40	2697	1	78464	G
SNP	41	2698	1	79130	T
SNP	42	2699	1	80077	G
SNP	43	2700	1	80581	T
SNP	44	2701	1	82249	G
SNP	45	2702	1	86562	G
SNP	46	2703	1	86942	T
SNP	47	2704	1	86997	T
SNP	48	2705	1	87566	T
SNP	49	2706	1	89008	C
SNP	50	2707	1	89106	A
SNP	51	2708	1	89342	A
SNP	52	2709	1	89348	G
SNP	53	2710	1	89521	T
SNP	54	2711	1	89601	G
DEL	55	5749	1	89708	5	repeat_length=5	repeat_new_copies=1	repeat_ref_copies=2	repeat_seq=TATAT
SNP	56	2719	1	89934	C
SNP	57	2723	1	90002	C
SNP	58	2738	1	90114	C
SNP	59	2760	1	90641	G
SNP	60	2775	1	91005	C
SNP	61	2779	1	91111	C
DEL	62	2780	1	91148	1	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=9	repeat_seq=T
SNP	63	2781	1	91180	G
SNP	64	2782	1	91207	C
SNP	65	2783	1	91237	T
SNP	66	2784	1	91427	G
SNP	67	2785	1	91485	A
SNP	68	2786	1	91505	T
SNP	69	2787	1	91515	G
DEL	70	5671,5753	1	91658	4
SNP	71	2788	1	91724	C
SNP	72	2789	1	91727	A
SNP	73	2791	1	92589	A
SNP	74	2792	1	92595	A
SNP	75	2793	1	92598	A
SNP	76	2794	1	92600	A
SNP	77	2795	1	92604	A
SNP	78	2796	1	92608	A
INS	79	2797	1	92612	A
SNP	80	2798	1	92642	T
SNP	81	2799	1	92645	C
SNP	82	2800	1	92666	A
SNP	83	2801	1	92675	C
SNP	84	2802	1	92678	G
SNP	85	2803	1	92689	T
SNP	86	2804	1	92693	C
SNP	87	2805	1	92708	G
SNP	88	2806	1	92713	G
SNP	89	2807	1	92908	C
SNP	90	2808	1	92912	C
SNP	91	2809	1	92914	G
SNP	92	2810	1	92929	C
SNP	93	2811	1	92936	A
SNP	94	2812	1	92951	C
SNP	95	2813	1	92975	C
SUB	96	2814,2815	1	92990	2	AC
SNP	97	2816	1	92993	C
SNP	98	2817	1	92995	G
SNP	99	2818	1	93002	G
SNP	100	2819	1	93005	G
SNP	101	2820	1	93008	G
SNP	102	2821	1	93011	T
SUB	103	2822,2823	1	93029	2	GC
SNP	104	2824	1	93033	G
SNP	105	2825	1	93035	G
SNP	106	2826	1	93038	C
SNP	107	2827	1	93047	C
SNP	108	2828	1	93050	G
SNP	109	2829	1	93053	C
SNP	110	2830	1	93056	G
SNP	111	2831	1	93061	T
SNP	112	2832	1	93089	G
SNP	113	2833	1	93101	C
SNP	114	2834	1	93104	C
SNP	115	2835	1	93107	T
SNP	116	2836	1	93131	C
SNP	117	2837	1	93161	T
SNP	118	2838	1	93182	G
SNP	119	2839	1	93239	C
SNP	120	2840	1	93256	A
SNP	121	2841	1	93281	T
SNP	122	2842	1	93284	C
SNP	123	2843	1	93287	C
SNP	124	2844	1	93290	A
SNP	125	2845	1	93299	C
SNP	126	2846	1	93302	G
SNP	127	2847	1	93305	A
SNP	128	2848	1	93316	C
SNP	129	2849	1	93320	A
SNP	130	2850	1	93326	G
SNP	131	2851	1	93329	C
SNP	132	2852	1	93332	C
SNP	133	2853	1	93335	T
SUB	134	2854,2855,2856,2857	1	93337	4	GTGA
SNP	135	2858	1	93344	G
SNP	136	2859	1	93352	G
SNP	137	2860	1	93356	T
SNP	138	2861	1	93358	C
SNP	139	2862	1	93365	G
SNP	140	2863	1	93371	A
SNP	141	2864	1	93398	C
SNP	142	2865	1	93428	A
SNP	143	2866	1	93448	A
SNP	144	2867	1	93452	C
SNP	145	2868	1	93470	T
SNP	146	2869	1	93542	G
SNP	147	2870	1	93563	C
SNP	148	2871	1	93590	C
SNP	149	2872	1	93592	C
SUB	150	2873,2874	1	93600	2	CC
SNP	151	2875	1	93606	C
SNP	152	2876	1	93611	C
SNP	153	2877	1	93617	T
SNP	154	2878	1	93641	A
SNP	155	2879	1	93644	G
SNP	156	2880	1	93647	A
SUB	157	2881,2882	1	93655	2	GG
SNP	158	2883	1	93662	C
SNP	159	2884	1	93674	C
SNP	160	2885	1	93686	C
SNP	161	2886	1	93711	C
SNP	162	2887	1	93713	G
SUB	163	2888,2889	1	93728	2	GA
SNP	164	2890	1	93743	C
SNP	165	2891	1	93767	A
SNP	166	2892	1	93769	T
SNP	167	2893	1	93776	G
SNP	168	2894	1	93902	G
SNP	169	2895	1	93911	A
SNP	170	2896	1	93914	G
SNP	171	2897	1	93931	G
SNP	172	2898	1	93959	A
SNP	173	2899	1	93988	C
SNP	174	2900	1	93990	C
SNP	175	2901	1	94025	A
SNP	176	2902	1	94049	C
SNP	177	2903	1	94052	C
DEL	178	2904	1	94061	1
INS	179	2905	1	94064	T
SNP	180	2906	1	94073	C
SNP	181	2907	1	94085	T
SNP	182	2908	1	94091	T
SNP	183	2909	1	94097	A
SNP	184	2910	1	94100	C
SNP	185	2911	1	94112	A
SNP	186	2912	1	94121	T
SNP	187	2913	1	94124	T
SNP	188	2914	1	94127	T
SNP	189	2915	1	94178	T
SNP	190	2916	1	94199	A
SNP	191	2917	1	94208	G
SNP	192	2918	1	94210	T
SNP	193	2919	1	94226	G
SNP	194	2920	1	94241	G
SNP	195	2921	1	94244	G
SNP	196	2922	1	94246	C
SNP	197	2923	1	94249	G
SNP	198	2924	1	94271	T
SUB	199	2925,2926	1	94294	2	GC
SNP	200	2927	1	94298	T
SNP	201	2928	1	94301	G
SNP	202	2929	1	94307	C
SUB	203	2930,2931	1	94309	2	AT
SNP	204	2932	1	94327	G
SNP	205	2933	1	94337	C
SNP	206	2934	1	94355	T
SNP	207	2935	1	94423	C
SNP	208	2936	1	94439	G
SNP	209	2937	1	94454	G
SNP	210	2938	1	94472	T
SNP	211	2939	1	94496	G
SNP	212	2940	1	94511	G
SNP	213	2941	1	94517	T
SNP	214	2942	1	94541	A
SNP	215	2943	1	94574	C
SNP	216	2944	1	94583	T
SUB	217	2945,2946	1	94586	2	GT
SNP	218	2947	1	94619	A
SNP	219	2948	1	94622	A
SNP	220	2949	1	94625	G
SNP	221	2950	1	94984	A
SNP	222	2951	1	94987	A
SNP	223	2952	1	94990	A
SNP	224	2953	1	95008	G
SNP	225	2956	1	101620	C
SNP	226	2957	1	101623	C
SNP	227	2958	1	101644	G
SNP	228	2959	1	101656	G
SNP	229	2960	1	101662	A
SNP	230	2961	1	101770	T
SNP	231	2962	1	101800	G
SNP	232	2963	1	101827	G
SNP	233	2964	1	101830	A
SNP	234	2965	1	101839	A
SNP	235	2966	1	101857	G
SNP	236	2967	1	101879	G
SNP	237	2968	1	101881	G
SNP	238	2969	1	101914	T
SNP	239	2970	1	101974	T
SNP	240	2971	1	101983	C
SNP	241	2972	1	101986	G
SNP	242	2973	1	102011	T
SNP	243	2974	1	102112	T
SNP	244	2975	1	102150	A
SNP	245	2976	1	102193	A
SNP	246	2977	1	102205	C
SNP	247	2978	1	102247	G
SNP	248	2979	1	102256	G
SNP	249	2987	1	102533	G
SNP	250	2988	1	102540	A
SNP	251	2989	1	102543	C
SNP	252	2990	1	102552	T
SNP	253	2991	1	102558	T
SNP	254	2992	1	102563	C
SNP	255	2993	1	102566	C
SNP	256	2994	1	102570	A
SNP	257	2995	1	102657	C
SNP	258	2996	1	102743	A
SNP	259	2997	1	102745	C
SNP	260	2998	1	102751	A
SNP	261	3000	1	103267	C
SNP	262	3001	1	103282	G
SNP	263	3002	1	103327	G
SNP	264	3003	1	103384	C
SNP	265	3004	1	103390	T
SNP	266	3005	1	103417	A
SNP	267	3006	1	103441	A
SNP	268	3007	1	103477	T
SNP	269	3008	1	103487	T
SNP	270	3009	1	103492	A
SNP	271	3010	1	103501	C
SNP	272	3011	1	103522	C
SNP	273	3012	1	103534	T
SNP	274	3013	1	103566	A
SNP	275	3014	1	103570	A
SNP	276	3015	1	103576	T
SNP	277	3016	1	103582	A
SNP	278	3017	1	103585	C
SNP	279	3018	1	103589	C
DEL	280	3019	1	103593	1
SNP	281	3020	1	103596	C
INS	282	3021	1	103600	T
SNP	283	3022	1	103611	A
SNP	284	3023	1	106009	G
SNP	285	3024	1	108631	G
SNP	286	3025	1	110063	T
SNP	287	3026	1	111247	C
SNP	288	3027	1	112193	C
SNP	289	3028	1	114473	T
INS	290	3029,3030	1	115752	TT	repeat_length=1	repeat_new_copies=9	repeat_ref_copies=7	repeat_seq=T
SNP	291	3031	1	116564	T
SNP	292	3032	1	117852	G
SNP	293	3033	1	118571	G
SNP	294	3034	1	118719	A
SNP	295	3035	1	118765	T
INS	296	3036	1	120905	G
SNP	297	3037	1	121783	A
SNP	298	3038	1	123935	C
SNP	299	3039	1	124350	G
SNP	300	3040	1	125219	G
SNP	301	3041	1	127264	T
SNP	302	3042	1	128021	T
SNP	303	3043	1	129402	T
SNP	304	3044	1	129898	T
SNP	305	3045	1	132243	A
DEL	306	3046,3047	1	135308	2	repeat_length=1	repeat_new_copies=5	repeat_ref_copies=7	repeat_seq=C
SNP	307	3048	1	137263	G
DEL	308	3049	1	137504	1
SNP	309	3050	1	138731	G
SNP	310	3051	1	138852	G
SNP	311	3052	1	139059	C
SNP	312	3053	1	139989	C
SNP	313	3054	1	141358	G
SNP	314	3055	1	142359	G
SNP	315	3056	1	143774	A
SNP	316	3057	1	144195	T
SNP	317	3058	1	148228	C
SNP	318	3059	1	150175	T
SNP	319	3060	1	150689	C
SNP	320	3061	1	153032	T
SNP	321	3062	1	158105	T
SNP	322	3063	1	158234	T
SNP	323	3064	1	158527	G
SNP	324	3065	1	159264	A
SNP	325	3066	1	159802	A
SNP	326	3067	1	161533	C
SNP	327	3068	1	165909	T
SNP	328	3069	1	166161	A
SNP	329	3070	1	166950	T
SNP	330	3072	1	168742	C
SNP	331	3073	1	168931	G
SNP	332	3074	1	169141	T
SNP	333	3075	1	169315	A
SNP	334	3076	1	170025	T
SNP	335	3077	1	170286	G
SNP	336	3078	1	171239	A
SNP	337	3079	1	171481	A
SNP	338	3083	1	171676	G
SNP	339	3084	1	176227	A
SNP	340	3085	1	176425	G
SNP	341	3086	1	178603	A
SNP	342	3087	1	178803	G
SNP	343	3088	1	179040	G
SNP	344	3089	1	181389	T
SNP	345	3090	1	183492	A
SNP	346	3091	1	185097	C
SNP	347	3095	1	186203	T
SNP	348	3096	1	186466	A
SNP	349	3097	1	186844	C
SNP	350	3098	1	187143	A
SNP	351	3099	1	188506	T
SNP	352	3100	1	188781	T
SNP	353	3101	1	188940	G
SNP	354	3102	1	189583	A
SNP	355	3105	1	193672	C
SNP	356	3106	1	193988	G
SNP	357	3107	1	194558	A
SNP	358	3108	1	195679	T
SNP	359	3109	1	197257	C
SNP	360	3110	1	198300	T
SNP	361	3111	1	198632	T
SNP	362	3112	1	199264	A
SNP	363	3113	1	202590	G
SNP	364	3114	1	202734	A
SNP	365	3115	1	203099	A
SNP	366	3116	1	207228	G
SNP	367	3117	1	208158	T
SNP	368	3118	1	208826	T
SNP	369	3119	1	210519	G
SNP	370	3120	1	210995	T
DEL	371	3121	1	214578	1	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=7	repeat_seq=A
SNP	372	3122	1	215715	G
SUB	373	3123,3124	1	216521	2	CC
SNP	374	3125	1	218367	A
SNP	375	3126	1	220101	A
SNP	376	3127	1	220929	T
SNP	377	3128	1	221011	G
SNP	378	3129	1	221341	G
SNP	379	3130	1	221377	C
SNP	380	3131	1	223012	G
SNP	381	3132	1	223310	C
SNP	382	3133	1	223458	G
SNP	383	3134	1	224388	C
SNP	384	3135	1	225381	T
SNP	385	3136	1	226616	C
SNP	386	3137	1	227989	C
SNP	387	3138	1	228791	G
SNP	388	3139	1	229173	G
SNP	389	3140	1	232106	C
SNP	390	3141	1	234139	G
SNP	391	3142	1	236922	G
SNP	392	3143	1	238104	C
SNP	393	3144	1	238701	A
SNP	394	3145	1	241163	A
SNP	395	3146	1	241940	A
SNP	396	3147	1	242009	C
SNP	397	3148	1	242780	A
SNP	398	3149	1	242828	G
SNP	399	3150	1	243772	C
SNP	400	3152	1	246460	A
SNP	401	3153	1	246791	T
SNP	402	3154	1	247087	G
SNP	403	3155	1	251039	C
SNP	404	3156	1	253117	G
SNP	405	3157	1	256229	T
SNP	406	3161	1	258984	A
SNP	407	3162	1	259728	G
SNP	408	3163	1	259767	A
SNP	409	3164	1	260176	A
SNP	410	3165	1	261102	A
DEL	411	5678,5763	1	263387	3	repeat_length=1	repeat_new_copies=3	repeat_ref_copies=6	repeat_seq=A
SNP	412	3166	1	264807	G
SNP	413	3167	1	265097	T
SNP	414	3168	1	265220	G
SNP	415	3169	1	265704	A
INS	416	3170	1	265907	A	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=7	repeat_seq=A
SNP	417	3171	1	266401	C
SNP	418	3172	1	266785	T
SNP	419	3173	1	267452	T
SNP	420	3174	1	268001	C
SNP	421	3175	1	272762	T
SNP	422	3176	1	274607	T
SNP	423	3177	1	274810	A
SNP	424	3178	1	274948	G
SNP	425	3184	1	275326	G
SNP	426	3186	1	279050	T
SNP	427	3187	1	284050	C
SNP	428	3188	1	285385	C
SNP	429	3189	1	285653	T
SNP	430	3191	1	290327	G
SNP	431	3192	1	297899	C
SNP	432	3193	1	298277	T
SNP	433	3194	1	298439	T
SNP	434	3195	1	299654	A
SNP	435	3196	1	301432	C
SNP	436	3197	1	302388	A
SNP	437	3198	1	302952	T
SNP	438	3199	1	303067	C
SNP	439	3200	1	303083	C
DEL	440	5680,5768	1	303133	63
SNP	441	3201	1	304730	T
SNP	442	3202	1	304923	G
INS	443	5769	1	305503	AAT
SNP	444	3203	1	305691	G
SNP	445	3204	1	308365	C
SNP	446	3205	1	308689	T
SNP	447	3210	1	312416	A
SNP	448	3211	1	314083	A
SNP	449	3212	1	314728	G
SNP	450	3213	1	315161	A
SNP	451	3214	1	315300	G
SNP	452	3215	1	319736	C
SNP	453	3216	1	320117	A
SNP	454	3217	1	323699	G
DEL	455	5681,5772	1	323831	19
SNP	456	3218	1	324799	G
SNP	457	3219	1	325331	T
SNP	458	3220	1	325880	T
SNP	459	3221	1	326540	G
SNP	460	3222	1	326881	C
SNP	461	3223	1	327421	G
SNP	462	3224	1	327423	G
SNP	463	3225	1	327934	T
SNP	464	3228	1	330762	A
SNP	465	3229	1	333143	A
SNP	466	3230	1	333818	G
SNP	467	3231	1	334758	G
SNP	468	3232	1	336332	T
SNP	469	3233	1	337349	C
SNP	470	3234	1	338071	A
SNP	471	3235	1	338621	A
SNP	472	3236	1	339829	C
SNP	473	3237	1	340394	C
SNP	474	3238	1	340693	A
SNP	475	3239	1	342956	G
SNP	476	3240	1	344218	C
SNP	477	3241	1	345968	C
SNP	478	3242	1	346059	T
SNP	479	3243	1	348069	G
SNP	480	3244	1	348593	G
SNP	481	3245	1	350995	A
SNP	482	3246	1	353636	G
SNP	483	3247	1	357942	T
SNP	484	3248	1	360839	C
SNP	485	3249	1	362692	C
SNP	486	3250	1	365275	G
SNP	487	3251	1	365539	C
SNP	488	3252	1	367037	A
SNP	489	3253	1	370771	A
SNP	490	3254	1	376427	A
SNP	491	3255	1	378018	G
SNP	492	3256	1	378171	A
SNP	493	3257	1	379080	T
SNP	494	3258	1	380111	T
SNP	495	3261	1	380918	G
SNP	496	3262	1	380926	A
SNP	497	3263	1	380932	C
DEL	498	3264	1	380935	1
SNP	499	3265	1	382113	G
SNP	500	3266	1	386488	A
SNP	501	3267	1	387225	T
SNP	502	3268	1	387463	A
INS	503	5778	1	388275	TCAAT
SNP	504	3270	1	391377	G
SNP	505	3271	1	394991	G
SNP	506	3272	1	399027	G
SNP	507	3275	1	406112	T
SNP	508	3276	1	406990	C
SNP	509	3277	1	407362	G
SNP	510	3278	1	407535	G
SNP	511	3279	1	407787	T
SNP	512	3280	1	409127	T
SNP	513	3281	1	411173	G
SNP	514	3286	1	412152	A
SNP	515	3287	1	413364	C
SNP	516	3288	1	413568	G
SNP	517	3289	1	413649	A
SNP	518	3290	1	415053	G
DEL	519	3291	1	415120	1	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=8	repeat_seq=T
SNP	520	3292	1	415699	C
SNP	521	3293	1	416780	T
DEL	522	5683,5781	1	417336	393
SNP	523	3294	1	418667	T
SNP	524	3295	1	419104	G
SNP	525	3298	1	421036	G
SNP	526	3299	1	422112	C
SNP	527	3300	1	422304	G
SNP	528	3301	1	425565	G
SNP	529	3302	1	427503	T
SNP	530	3303	1	429580	A
SNP	531	3304	1	433279	G
SNP	532	3305	1	434229	G
SNP	533	3306	1	436586	T
SNP	534	3307	1	437161	G
SNP	535	3308	1	437752	G
SNP	536	3309	1	439231	T
SNP	537	3310	1	439587	G
SNP	538	3313	1	446594	A
SNP	539	3314	1	449161	A
SNP	540	3315	1	450857	G
DEL	541	5687,5784	1	451507	3	repeat_length=3	repeat_new_copies=2	repeat_ref_copies=3	repeat_seq=GCA
SNP	542	3316	1	451549	G
SNP	543	3317	1	451719	G
DEL	544	5688,5785	1	455108	1609
DEL	545	3318	1	456969	1	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=7	repeat_seq=A
SNP	546	3319	1	457258	A
SNP	547	3320	1	457281	T
SNP	548	3321	1	457296	G
SUB	549	3322,3323,3324	1	457304	3	TTT
DEL	550	3325	1	457318	1	repeat_length=1	repeat_new_copies=5	repeat_ref_copies=6	repeat_seq=T
SNP	551	3326	1	457337	T
SNP	552	3327	1	457406	G
SNP	553	3328	1	457418	C
SUB	554	3329,3330	1	457420	2	AT
SNP	555	3331	1	457436	C
SNP	556	3332	1	457441	G
SNP	557	3333	1	457444	T
SUB	558	3334,3335	1	457449	2	TC
SUB	559	3336,3337	1	457523	2	CA
SUB	560	3338,3339	1	457528	2	CT
SNP	561	3340	1	457547	C
SNP	562	3341	1	457578	C
SNP	563	3342	1	457584	C
SNP	564	3343	1	457644	A
SNP	565	3344	1	460501	A
SNP	566	3345	1	460760	A
SNP	567	3346	1	462443	G
SNP	568	3347	1	462643	A
SNP	569	3348	1	462757	C
SNP	570	3349	1	463862	A
SNP	571	3350	1	463924	C
SNP	572	3351	1	466270	A
SNP	573	3352	1	466866	G
SNP	574	3353	1	470245	A
SNP	575	3354	1	472051	G
SNP	576	3355	1	472961	C
SNP	577	3356	1	473216	A
SNP	578	3357	1	473258	G
SNP	579	3358	1	473371	C
SNP	580	3359	1	477266	T
SNP	581	3360	1	477568	T
SNP	582	3361	1	477618	C
SNP	583	3362	1	477682	A
SNP	584	3363	1	477687	G
SNP	585	3364	1	478400	G
SNP	586	3365	1	478456	C
SNP	587	3366	1	478759	C
SNP	588	3367	1	478823	T
SNP	589	3369	1	479957	T
SNP	590	3370	1	480145	G
SNP	591	3371	1	480159	G
SNP	592	3372	1	481331	G
SNP	593	3373	1	483992	G
SNP	594	3374	1	485005	A
SNP	595	3375	1	485686	T
SNP	596	3376	1	486211	C
SNP	597	3388	1	487589	C
SNP	598	3389	1	488032	T
SNP	599	3390	1	488436	A
SNP	600	3391	1	491392	G
SNP	601	3392	1	491758	T
SNP	602	3393	1	492562	C
SNP	603	3394	1	492992	G
SNP	604	3395	1	493174	G
SNP	605	3396	1	495810	A
SNP	606	3397	1	499479	G
SNP	607	3398	1	499967	G
DEL	608	5690,5788	1	501335	24
SNP	609	3400	1	501985	T
SNP	610	3401	1	506359	A
SNP	611	3402	1	507117	C
SNP	612	3404	1	510072	T
SNP	613	3406	1	511680	T
SNP	614	3407	1	511808	A
SNP	615	3411	1	514355	G
SNP	616	3414	1	515759	G
SNP	617	3415	1	516262	G
SNP	618	3416	1	520353	G
SNP	619	3417	1	520681	G
SNP	620	3418	1	521425	C
SNP	621	3419	1	522849	A
DEL	622	5691,5790	1	522979	1462
SNP	623	3435	1	524947	C
SNP	624	3438	1	526502	C
SNP	625	3439	1	526779	A
SNP	626	3440	1	527808	T
SNP	627	3441	1	528690	A
SNP	628	3442	1	529719	A
SNP	629	3443	1	531090	A
SNP	630	3444	1	531904	G
SNP	631	3445	1	532190	C
SNP	632	3446	1	533747	G
DEL	633	5692,5792	1	535191	4
SNP	634	3447	1	536082	G
SNP	635	3449	1	541582	C
SNP	636	3450	1	541751	A
SNP	637	3451	1	542936	A
SNP	638	3452	1	543978	A
SNP	639	3453	1	545658	T
SNP	640	3457	1	553971	G
SNP	641	3458	1	554536	G
SNP	642	3459	1	556419	A
SNP	643	3460	1	560792	A
INS	644	3461	1	561769	T
SNP	645	3462	1	562978	G
SNP	646	3463	1	564477	C
SNP	647	3464	1	565691	G
SNP	648	3465	1	565873	C
SNP	649	3466	1	565936	A
INS	650	5793	1	572187	TTATT	repeat_length=5	repeat_new_copies=2	repeat_ref_copies=1	repeat_seq=TTATT
SNP	651	3468	1	572891	A
SNP	652	3469	1	574830	A
SNP	653	3470	1	575111	A
SNP	654	3471	1	576242	C
SNP	655	3472	1	576820	G
SNP	656	3473	1	577638	T
SNP	657	3474	1	577676	T
SNP	658	3475	1	579251	C
SNP	659	3476	1	580808	A
SNP	660	3480	1	586720	C
SNP	661	3481	1	587584	C
SNP	662	3482	1	588454	A
SNP	663	3483	1	592346	C
SNP	664	3484	1	595597	T
SNP	665	3485	1	597866	C
SNP	666	3486	1	599392	T
SNP	667	3487	1	601248	G
SNP	668	3488	1	601279	G
SNP	669	3489	1	601412	C
SNP	670	3490	1	601423	A
SNP	671	3491	1	601425	G
SNP	672	3492	1	601427	T
SNP	673	3493	1	601432	C
DEL	674	3494	1	602417	1	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=7	repeat_seq=A
SNP	675	3495	1	602421	C
SNP	676	3496	1	602585	C
SNP	677	3497	1	602596	G
SNP	678	3498	1	602619	A
SNP	679	3499	1	602623	A
SNP	680	3500	1	602666	T
SNP	681	3501	1	602683	A
SNP	682	3502	1	602703	T
SNP	683	3503	1	602716	T
INS	684	5798	1	602729	GGCGGT
SNP	685	3504	1	602730	G
SNP	686	3505	1	602863	C
SNP	687	3506	1	602870	C
SNP	688	3507	1	602946	G
SNP	689	3515	1	605033	G
SNP	690	3516	1	606065	C
SNP	691	3517	1	606070	C
SNP	692	3518	1	612407	T
SNP	693	3519	1	612483	T
SNP	694	3520	1	612705	T
SNP	695	3521	1	612981	C
SNP	696	3522	1	613034	C
SNP	697	3526	1	616243	A
SNP	698	3527	1	616878	C
SNP	699	3528	1	616908	C
SNP	700	3530	1	619149	G
SNP	701	3531	1	620222	A
SNP	702	3532	1	621472	T
SNP	703	3533	1	621944	A
SNP	704	3534	1	623617	C
SNP	705	3535	1	623696	C
SNP	706	3536	1	624077	T
SNP	707	3537	1	624479	C
SNP	708	3539	1	624929	A
SNP	709	3540	1	625534	G
SNP	710	3542	1	628978	T
SNP	711	3543	1	630039	C
SNP	712	3544	1	631960	C
SNP	713	3545	1	632953	G
SNP	714	3546	1	633027	T
SNP	715	3547	1	634275	C
SNP	716	3548	1	636270	C
SNP	717	3549	1	637883	G
SNP	718	3550	1	643800	C
SNP	719	3551	1	646353	G
DEL	720	3552	1	648075	1	repeat_length=1	repeat_new_copies=4	repeat_ref_copies=5	repeat_seq=C
SNP	721	3553	1	648597	T
SUB	722	3554,3555,3556	1	651411	3	GTC
SNP	723	3557	1	651524	A
SNP	724	3558	1	652184	A
INS	725	3559,3560	1	652503	TT
SNP	726	3561	1	652920	T
SNP	727	3562	1	653064	C
SNP	728	3563	1	654408	C
SNP	729	3564	1	656790	G
SNP	730	3565	1	657485	A
SNP	731	3566	1	661017	T
SNP	732	3567	1	661305	A
SNP	733	3568	1	662044	A
SNP	734	3569	1	663804	T
SNP	735	3571	1	665400	C
SNP	736	3572	1	665447	C
SNP	737	3573	1	666485	A
SNP	738	3574	1	671648	T
SNP	739	3575	1	672286	C
SNP	740	3576	1	673446	A
SNP	741	3577	1	675761	T
DEL	742	5695,5803	1	675858	16	repeat_length=16	repeat_new_copies=1	repeat_ref_copies=2	repeat_seq=TCAACATGGTAACAAA
SNP	743	3578	1	675956	A
SNP	744	3579	1	676640	T
SNP	745	3580	1	678250	T
INS	746	3581,3582	1	679256	TG
SNP	747	3583	1	680126	G
SNP	748	3586	1	684409	G
SNP	749	3587	1	685908	T
SNP	750	3588	1	687935	T
SNP	751	3589	1	689028	A
SNP	752	3590	1	690144	G
SNP	753	3591	1	691284	C
SNP	754	3592	1	693742	A
SNP	755	3593	1	696279	G
SNP	756	3594	1	698890	C
SNP	757	3595	1	699025	G
SNP	758	3596	1	699232	G
SNP	759	3597	1	700904	A
SNP	760	3598	1	701399	G
SNP	761	3599	1	702272	G
SNP	762	3600	1	705539	A
SNP	763	3601	1	706589	G
SNP	764	3602	1	706883	C
SNP	765	3603	1	707442	G
SNP	766	3604	1	707708	T
SNP	767	3605	1	708165	G
SNP	768	3606	1	708224	G
SNP	769	3607	1	709744	C
SNP	770	3608	1	709937	A
SNP	771	3609	1	711278	C
SNP	772	3610	1	711845	T
SNP	773	3611	1	714920	T
SNP	774	3612	1	716292	G
SNP	775	3613	1	719066	T
SNP	776	3614	1	719481	G
SNP	777	3617	1	721304	C
SNP	778	3618	1	722146	C
SNP	779	3619	1	723849	G
SNP	780	3624	1	724359	A
SNP	781	3625	1	725854	T
SNP	782	3626	1	726359	T
SNP	783	3627	1	726597	C
SNP	784	3628	1	726708	C
INS	785	3629,3630	1	726719	TT
SNP	786	3631	1	731378	T
SNP	787	3632	1	731381	C
SNP	788	3634	1	738961	A
SNP	789	3635	1	738970	A
SNP	790	3636	1	739038	G
SNP	791	3637	1	742687	G
SNP	792	3638	1	744751	A
SNP	793	3639	1	746603	G
SNP	794	3640	1	749188	C
SNP	795	3641	1	750505	A
SNP	796	3642	1	753055	A
SNP	797	3643	1	755977	C
SNP	798	3644	1	756456	T
SNP	799	3645	1	758289	G
SNP	800	3646	1	758440	T
SNP	801	3647	1	759268	C
SNP	802	3648	1	760761	C
DEL	803	5698,5807	1	761038	4	repeat_length=4	repeat_new_copies=1	repeat_ref_copies=2	repeat_seq=AGGC
SNP	804	3649	1	761274	A
SNP	805	3650	1	761853	C
SNP	806	3651	1	763259	G
SNP	807	3652	1	766332	T
SNP	808	3653	1	767681	A
SNP	809	3655	1	769953	G
SNP	810	3656	1	770431	C
SNP	811	3657	1	772753	C
SNP	812	3658	1	772860	G
SNP	813	3659	1	777187	T
SNP	814	3660	1	780027	T
SNP	815	3661	1	780197	T
SNP	816	3662	1	780801	T
SNP	817	3664	1	786702	G
SNP	818	3665	1	787269	A
SNP	819	3666	1	787482	C
SNP	820	3667	1	788130	C
SNP	821	3668	1	788368	T
SNP	822	3669	1	788527	G
SNP	823	3670	1	788910	T
SNP	824	3671	1	793589	G
SNP	825	3672	1	796929	A
SNP	826	3673	1	798669	G
SNP	827	3674	1	800724	T
SNP	828	3675	1	800750	A
SNP	829	3676	1	802286	T
SNP	830	3677	1	802912	G
SNP	831	3678	1	804772	T
SNP	832	3679	1	805684	G
SNP	833	3680	1	805998	T
SNP	834	3682	1	813314	G
SNP	835	3683	1	818234	G
SNP	836	3684	1	819363	C
SNP	837	3685	1	819529	T
SNP	838	3687	1	822766	T
SNP	839	3688	1	823999	T
SNP	840	3690	1	825884	A
SNP	841	3691	1	826296	T
SNP	842	3693	1	826940	G
SNP	843	3694	1	832498	A
SNP	844	3695	1	834300	C
DEL	845	3696	1	834507	1
SNP	846	3697	1	834559	A
SNP	847	3698	1	835172	C
SNP	848	3699	1	836492	C
SNP	849	3700	1	838673	T
SNP	850	3701	1	839371	T
SNP	851	3702	1	839582	G
SNP	852	3703	1	843826	C
SNP	853	3704	1	846251	C
SUB	854	5700,5811	1	846494	76	GATATTTCTGATATTTCTGTTGATATGCGTCGAAATGAAAGGAATTAGGATGAATAA
SNP	855	3705	1	847225	G
DEL	856	3706	1	848503	1	repeat_length=1	repeat_new_copies=4	repeat_ref_copies=5	repeat_seq=T
SNP	857	3707	1	849077	G
SNP	858	3708	1	849490	C
DEL	859	3709	1	851485	1
SNP	860	3710	1	851597	G
SNP	861	3712	1	856248	G
SNP	862	3713	1	856957	A
SNP	863	3714	1	857985	A
SNP	864	3715	1	862680	G
SNP	865	3716	1	862933	A
SNP	866	3717	1	863056	T
SNP	867	3718	1	864555	A
SNP	868	3719	1	866938	C
SNP	869	3720	1	867216	T
SNP	870	3721	1	868532	C
SNP	871	3722	1	874210	T
SNP	872	3723	1	874480	G
SNP	873	3724	1	875355	G
SNP	874	3725	1	876389	G
SNP	875	3726	1	877589	T
INS	876	3727	1	877936	T	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=T
SNP	877	3728	1	880201	C
INS	878	5813	1	882082	GGTAAA
SNP	879	3730	1	882226	T
SNP	880	3731	1	882296	C
SNP	881	3732	1	882312	T
SNP	882	3733	1	882832	T
SNP	883	3734	1	884303	T
SNP	884	3735	1	884858	A
SNP	885	3736	1	885599	A
SNP	886	3737	1	889052	C
SNP	887	3738	1	890834	G
SNP	888	3739	1	891673	C
SUB	889	3740,3741	1	894165	2	A
SNP	890	3742	1	894835	C
SNP	891	3743	1	894852	A
SNP	892	3744	1	894870	A
SNP	893	3745	1	894880	G
SNP	894	3746	1	894892	G
SNP	895	3747	1	894913	T
SUB	896	3748,3749	1	894915	2	AT
SNP	897	3750	1	894920	G
SNP	898	3751	1	894922	G
SNP	899	3752	1	894925	A
SNP	900	3753	1	894931	T
SNP	901	3754	1	894934	G
SNP	902	3755	1	894951	T
SNP	903	3756	1	894973	C
SNP	904	3757	1	895042	A
SNP	905	3758	1	895046	C
SNP	906	3759	1	895049	T
SNP	907	3760	1	895072	T
SNP	908	3761	1	895093	G
SNP	909	3762	1	895096	T
SNP	910	3763	1	895108	G
SNP	911	3764	1	895124	C
SNP	912	3765	1	895147	C
SNP	913	3766	1	895151	A
SNP	914	3767	1	895216	A
SNP	915	3768	1	895277	G
SNP	916	3769	1	895284	A
SNP	917	3770	1	895306	A
SNP	918	3771	1	895336	T
DEL	919	3773,3774	1	895345	2
DEL	920	3775,3776	1	895347	2
SNP	921	3777	1	895356	T
SNP	922	3778	1	895361	G
SNP	923	3779	1	895366	T
SNP	924	3780	1	895378	G
SNP	925	3781	1	895394	C
SNP	926	3782	1	895399	G
SNP	927	3783	1	895401	A
SNP	928	3784	1	895410	A
SNP	929	3785	1	895458	A
SNP	930	3786	1	895487	T
SNP	931	3787	1	895490	C
SUB	932	3788,3789	1	895520	2	TG
INS	933	3790	1	895529	G
SUB	934	3791,3792	1	895533	2	C
SNP	935	3793	1	895553	T
SNP	936	3794	1	895563	A
SNP	937	3795	1	895579	C
SNP	938	3796	1	895613	G
SNP	939	3797	1	895631	A
SNP	940	3798	1	895668	T
SNP	941	3799	1	895685	G
SUB	942	3800,3801	1	895709	2	CG
SNP	943	3802	1	895721	T
SUB	944	3803,3804	1	895736	2	CT
SNP	945	3805	1	895767	G
SNP	946	3806	1	895785	C
SNP	947	3807	1	895787	A
SNP	948	3808	1	895796	C
SNP	949	3809	1	895811	G
SNP	950	3810	1	895907	T
SNP	951	3811	1	895919	C
SNP	952	3812	1	895931	T
SNP	953	3813	1	895940	T
SNP	954	3814	1	895955	T
SNP	955	3815	1	895967	C
SNP	956	3816	1	895980	A
SNP	957	3817	1	895985	G
SNP	958	3818	1	896009	T
SNP	959	3819	1	896069	T
SNP	960	3820	1	896099	T
SNP	961	3821	1	896108	T
SNP	962	3822	1	896113	C
SNP	963	3823	1	896126	A
SUB	964	3824,3825	1	896140	2	CT
SNP	965	3826	1	896154	T
SNP	966	3827	1	896162	T
SUB	967	3828,3829	1	896165	2	CA
SNP	968	3830	1	896171	T
SNP	969	3831	1	896191	A
SNP	970	3832	1	896202	C
SNP	971	3833	1	896204	T
SNP	972	3834	1	896228	A
SNP	973	3835	1	896240	C
SUB	974	3836,3837	1	896245	2	CA
SNP	975	3838	1	896258	T
SNP	976	3839	1	896264	G
SNP	977	3840	1	896266	C
SNP	978	3841	1	896270	C
SNP	979	3842	1	896321	T
SNP	980	3843	1	896336	T
SNP	981	3844	1	896339	G
SNP	982	3845	1	896357	T
SNP	983	3846	1	896363	C
SNP	984	3847	1	896379	C
SNP	985	3848	1	896395	T
SNP	986	3849	1	896417	T
SUB	987	3850,3851	1	896434	2	TG
SNP	988	3852	1	896441	T
SNP	989	3853	1	896444	T
SNP	990	3854	1	896447	T
SNP	991	3855	1	896454	T
SNP	992	3856	1	896466	G
SUB	993	3857,3858	1	896524	2	AA
SNP	994	3859	1	896532	G
SNP	995	3860	1	896537	T
SNP	996	3861	1	896550	T
SNP	997	3862	1	896553	C
SNP	998	3863	1	896559	C
SNP	999	3864	1	896561	C
SNP	1000	3865	1	896567	G
SNP	1001	3866	1	896570	C
SNP	1002	3867	1	896578	G
SNP	1003	3868	1	896587	C
SNP	1004	3869	1	896602	T
SNP	1005	3870	1	896606	T
SNP	1006	3871	1	896625	A
SNP	1007	3872	1	896654	C
SUB	1008	3873,3874	1	896656	2	GT
SNP	1009	3875	1	896660	A
SNP	1010	3876	1	896687	T
SNP	1011	3877	1	896696	C
SNP	1012	3878	1	896711	A
SNP	1013	3879	1	896726	G
SNP	1014	3880	1	896735	G
SUB	1015	3881,3882	1	896737	2	AA
SNP	1016	3883	1	896745	C
SNP	1017	3884	1	896750	T
SNP	1018	3885	1	896767	T
SNP	1019	3886	1	896786	T
SNP	1020	3887	1	896802	G
SNP	1021	3888	1	896806	C
SUB	1022	3889,3890	1	896809	2	CG
SNP	1023	3891	1	896819	G
SUB	1024	3892,3893	1	896825	2	AT
SNP	1025	3894	1	896828	G
SNP	1026	3895	1	896843	T
SNP	1027	3896	1	896845	G
SNP	1028	3897	1	896850	A
SNP	1029	3898	1	896864	G
SUB	1030	3899,3900	1	896881	2	TA
SNP	1031	3901	1	896897	T
SNP	1032	3902	1	896912	C
SNP	1033	3903	1	896932	C
SUB	1034	3904,3905	1	896939	2	TG
SNP	1035	3906	1	896942	C
SNP	1036	3907	1	896944	T
SNP	1037	3908	1	896954	C
SNP	1038	3909	1	896966	C
SNP	1039	3910	1	896969	G
SNP	1040	3911	1	896981	T
SNP	1041	3912	1	896987	G
SNP	1042	3913	1	896990	T
SUB	1043	3914,3915	1	897020	2	AG
SNP	1044	3916	1	897026	C
SNP	1045	3917	1	897041	T
SNP	1046	3918	1	897066	C
SNP	1047	3919	1	897107	C
SNP	1048	3920	1	897141	C
SNP	1049	3921	1	897150	T
SNP	1050	3922	1	897155	T
SNP	1051	3923	1	897158	C
SNP	1052	3924	1	897161	T
SNP	1053	3925	1	897171	G
SNP	1054	3926	1	897192	A
SNP	1055	3927	1	897199	G
SNP	1056	3928	1	897210	A
SNP	1057	3929	1	897242	T
SNP	1058	3930	1	897257	C
SNP	1059	3931	1	897293	A
SNP	1060	3932	1	897312	T
SNP	1061	3933	1	897317	A
SNP	1062	3934	1	897320	A
SNP	1063	3935	1	897325	G
SUB	1064	3936,3937	1	897329	2	AA
SNP	1065	3938	1	897333	C
SNP	1066	3939	1	897341	C
SNP	1067	3940	1	897353	G
SNP	1068	3941	1	897362	A
SNP	1069	3942	1	897365	A
SNP	1070	3943	1	897367	G
SUB	1071	3944,3945	1	897373	2	AG
SNP	1072	3946	1	897377	T
SNP	1073	3947	1	897380	T
SNP	1074	3948	1	897393	C
SNP	1075	3949	1	897401	A
SNP	1076	3950	1	897416	C
SUB	1077	3951,3952	1	897418	2	TG
SNP	1078	3953	1	897422	C
SNP	1079	3954	1	897425	C
SUB	1080	3955,3956	1	897488	2	TT
SNP	1081	3957	1	897515	G
SNP	1082	3958	1	897533	A
SNP	1083	3959	1	897536	G
DEL	1084	3960	1	897559	1
INS	1085	3961	1	897561	A
SNP	1086	3962	1	897587	T
SNP	1087	3963	1	897617	A
SNP	1088	3964	1	897623	C
SNP	1089	3965	1	897669	A
SNP	1090	3966	1	897680	G
SNP	1091	3967	1	897701	G
SNP	1092	3968	1	897707	G
SNP	1093	3969	1	897713	T
SNP	1094	3970	1	897719	A
SNP	1095	3971	1	897727	A
SNP	1096	3972	1	897731	G
SNP	1097	3973	1	897748	G
SNP	1098	3974	1	897755	A
SNP	1099	3975	1	897770	C
SNP	1100	3976	1	897774	T
SNP	1101	3977	1	897785	A
SNP	1102	3978	1	897803	A
SNP	1103	3979	1	897811	C
SNP	1104	3980	1	897817	G
SNP	1105	3981	1	897843	G
SUB	1106	3982,3983	1	897848	2	CC
SNP	1107	3984	1	897855	G
SNP	1108	3985	1	897857	T
SNP	1109	3986	1	897884	A
SNP	1110	3987	1	897898	T
SNP	1111	3988	1	897927	G
SNP	1112	3989	1	897938	A
SNP	1113	3990	1	897940	A
SNP	1114	3991	1	897957	G
SNP	1115	3992	1	897971	G
SNP	1116	3993	1	897974	T
SNP	1117	3994	1	897990	A
SNP	1118	3995	1	898005	T
SUB	1119	3996,3997	1	898008	2	GC
SNP	1120	3998	1	898055	T
SNP	1121	3999	1	898075	A
INS	1122	4000	1	898087	T
SNP	1123	4001	1	898103	A
SNP	1124	4002	1	898108	A
SNP	1125	4003	1	898119	T
SNP	1126	4004	1	898152	C
SNP	1127	4005	1	898176	C
SNP	1128	4006	1	898179	T
SNP	1129	4007	1	898200	G
SNP	1130	4008	1	898209	G
SNP	1131	4009	1	898224	C
SNP	1132	4010	1	898227	C
SNP	1133	4011	1	898236	T
SNP	1134	4012	1	898245	A
SNP	1135	4013	1	898256	C
SNP	1136	4014	1	898261	A
SNP	1137	4015	1	898283	A
SNP	1138	4016	1	898287	C
SNP	1139	4017	1	898345	C
SNP	1140	4018	1	898351	C
SNP	1141	4019	1	898383	T
SUB	1142	4020,4021	1	898387	2	CA
SNP	1143	4022	1	898395	A
SNP	1144	4023	1	898517	T
DEL	1145	4024	1	898578	1	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=7	repeat_seq=A
SNP	1146	4025	1	898619	G
SNP	1147	4026	1	898628	T
SNP	1148	4027	1	898681	T
SNP	1149	4028	1	898684	T
SNP	1150	4029	1	898702	T
SNP	1151	4030	1	898707	C
SNP	1152	4031	1	898773	T
SNP	1153	4032	1	898810	C
SNP	1154	4033	1	898852	T
SNP	1155	4034	1	898856	T
SUB	1156	4035,4036	1	898902	2	AA
SNP	1157	4037	1	898914	A
SNP	1158	4038	1	898922	G
SNP	1159	4039	1	899083	T
SNP	1160	4040	1	899176	G
SNP	1161	4041	1	899185	G
SNP	1162	4042	1	899374	C
SNP	1163	4043	1	899595	T
SNP	1164	4044	1	899616	C
SNP	1165	4045	1	899760	C
SNP	1166	4046	1	900267	A
SNP	1167	4047	1	900707	G
SNP	1168	4048	1	901395	T
SNP	1169	4049	1	908222	C
SNP	1170	4050	1	908227	C
SNP	1171	4051	1	908874	C
SNP	1172	4052	1	909845	G
SNP	1173	4053	1	911806	C
SNP	1174	4054	1	913776	G
SNP	1175	4055	1	916742	A
SNP	1176	4056	1	917457	T
SNP	1177	4057	1	917936	C
SNP	1178	4058	1	918186	G
SNP	1179	4059	1	918988	C
SNP	1180	4060	1	920405	G
SNP	1181	4061	1	920917	G
SNP	1182	4064	1	924077	T
INS	1183	5816	1	925247	GAGAACAAA	repeat_length=9	repeat_new_copies=2	repeat_ref_copies=1	repeat_seq=GAGAACAAA
SNP	1184	4065	1	925333	G
SNP	1185	4066	1	927188	G
SNP	1186	4067	1	927271	G
SNP	1187	4068	1	927308	T
SNP	1188	4069	1	936659	A
SNP	1189	4070	1	936835	C
SNP	1190	4071	1	939118	C
SNP	1191	4072	1	939539	A
SNP	1192	4073	1	941001	T
SNP	1193	4076	1	942894	G
SNP	1194	4077	1	944067	T
SNP	1195	4078	1	944698	T
SNP	1196	4079	1	945020	G
SNP	1197	4080	1	947707	A
INS	1198	4081	1	949971	A	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=7	repeat_seq=A
SNP	1199	4082	1	950554	C
SNP	1200	4083	1	950935	C
SNP	1201	4084	1	951061	C
SNP	1202	4085	1	951736	A
SNP	1203	4086	1	951948	T
SNP	1204	4087	1	954023	G
INS	1205	4088	1	954226	T
DEL	1206	5701,5819	1	954874	1649
SNP	1207	4089	1	957811	G
SNP	1208	4090	1	960130	G
SNP	1209	4091	1	960327	A
SNP	1210	4092	1	960869	G
SNP	1211	4093	1	962916	T
SNP	1212	4094	1	963089	A
SNP	1213	4095	1	965182	T
DEL	1214	5702,5820	1	967649	1865
SNP	1215	4096	1	969597	C
SNP	1216	4097	1	969805	C
SNP	1217	4098	1	970733	G
SNP	1218	4099	1	972101	C
SNP	1219	4100	1	972204	A
SNP	1220	4101	1	974777	G
SNP	1221	4102	1	976567	C
SNP	1222	4103	1	978500	A
SNP	1223	4104	1	979025	A
SNP	1224	4105	1	979521	G
DEL	1225	4106	1	981395	1	repeat_length=1	repeat_new_copies=5	repeat_ref_copies=6	repeat_seq=C
SNP	1226	4107	1	981616	G
SNP	1227	4108	1	981854	G
SNP	1228	4109	1	982287	T
SNP	1229	4110	1	986436	C
SNP	1230	4111	1	988997	T
SNP	1231	4112	1	992097	G
SNP	1232	4113	1	993721	G
SNP	1233	4114	1	993836	C
DEL	1234	4116,4117	1	994761	2	repeat_length=1	repeat_new_copies=9	repeat_ref_copies=11	repeat_seq=C
SNP	1235	4118	1	998329	G
SNP	1236	4119	1	1001129	A
SNP	1237	4120	1	1001289	C
SNP	1238	4121	1	1002969	T
SNP	1239	4122	1	1004736	A
INS	1240	5821	1	1004989	GTACTTCGT
SNP	1241	4123	1	1007798	A
SNP	1242	4124	1	1009517	T
SNP	1243	4125	1	1019178	A
SNP	1244	4126	1	1019326	T
SNP	1245	4127	1	1021887	G
SNP	1246	4128	1	1022634	G
SNP	1247	4129	1	1025975	C
SNP	1248	4130	1	1026312	G
SNP	1249	4131	1	1028241	G
SNP	1250	4132	1	1029048	C
SNP	1251	4133	1	1030023	C
SNP	1252	4134	1	1031457	T
SNP	1253	4135	1	1031829	C
SNP	1254	4136	1	1031960	A
DEL	1255	5703,5822	1	1032840	1249
SUB	1256	4137,4138	1	1034819	2	TT
SNP	1257	4139	1	1036000	G
SNP	1258	4140	1	1036070	A
SNP	1259	4141	1	1036133	T
SNP	1260	4177	1	1038064	C
SNP	1261	4178	1	1038375	A
SNP	1262	4179	1	1043743	A
SNP	1263	4180	1	1046277	A
SNP	1264	4181	1	1046655	G
SNP	1265	4182	1	1047247	T
SNP	1266	4183	1	1047533	A
SNP	1267	4184	1	1050743	C
SNP	1268	4185	1	1051679	C
SNP	1269	4186	1	1052002	C
SNP	1270	4187	1	1055335	G
SNP	1271	4188	1	1056712	G
SNP	1272	4190	1	1058558	T
SNP	1273	4191	1	1061776	C
SNP	1274	4192	1	1062495	G
SNP	1275	4193	1	1062554	C
SNP	1276	4194	1	1063227	A
SNP	1277	4195	1	1064380	A
SNP	1278	4196	1	1071535	C
SNP	1279	4197	1	1072496	G
SNP	1280	4198	1	1074705	C
SNP	1281	4199	1	1076050	G
SNP	1282	4200	1	1079780	A
SNP	1283	4201	1	1080746	G
SNP	1284	4202	1	1081537	A
SNP	1285	4203	1	1081643	A
SNP	1286	4204	1	1081939	T
SNP	1287	4205	1	1083709	G
SNP	1288	4206	1	1084281	C
SNP	1289	4207	1	1085512	C
SNP	1290	4208	1	1085661	C
SNP	1291	4209	1	1086794	G
SNP	1292	4210	1	1087288	T
SNP	1293	4211	1	1090820	A
SNP	1294	4212	1	1096762	C
SNP	1295	4214	1	1100671	C
SNP	1296	4215	1	1101181	G
SNP	1297	4216	1	1101281	G
SNP	1298	4217	1	1101878	C
SNP	1299	4218	1	1103406	G
DEL	1300	4219	1	1105053	1
SNP	1301	4220	1	1107637	A
SNP	1302	4221	1	1109518	C
SNP	1303	4222	1	1111876	A
SNP	1304	4223	1	1113729	T
SNP	1305	4224	1	1116392	T
SNP	1306	4225	1	1116681	A
SNP	1307	4226	1	1117504	C
SNP	1308	4227	1	1117603	G
SNP	1309	4228	1	1120133	T
SNP	1310	4229	1	1120566	T
SNP	1311	4230	1	1122392	T
SNP	1312	4231	1	1122573	T
SNP	1313	4232	1	1124136	C
SNP	1314	4233	1	1126361	C
SNP	1315	4234	1	1126605	G
SNP	1316	4235	1	1126611	A
SNP	1317	4236	1	1129738	T
SNP	1318	4237	1	1129901	G
SNP	1319	4238	1	1131736	G
SNP	1320	4239	1	1131881	C
SNP	1321	4240	1	1134072	A
SNP	1322	4241	1	1134180	G
SNP	1323	4242	1	1134439	T
SNP	1324	4243	1	1135939	C
SNP	1325	4244	1	1137379	A
SNP	1326	4245	1	1137491	A
SNP	1327	4246	1	1137804	T
SNP	1328	4247	1	1138460	A
SNP	1329	4248	1	1138783	T
DEL	1330	4249	1	1139326	1	repeat_length=1	repeat_new_copies=4	repeat_ref_copies=5	repeat_seq=A
SNP	1331	4250	1	1140784	G
SNP	1332	4251	1	1141036	G
SNP	1333	4253	1	1142578	C
SNP	1334	4254	1	1147930	G
SNP	1335	4255	1	1147932	G
SNP	1336	4256	1	1148135	C
SNP	1337	4257	1	1149350	C
SNP	1338	4258	1	1150382	A
SNP	1339	4259	1	1151714	G
SNP	1340	4260	1	1151954	C
DEL	1341	4261	1	1152044	1	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=9	repeat_seq=T
SNP	1342	4262	1	1154288	C
SNP	1343	4263	1	1155947	G
SNP	1344	4264	1	1157521	C
SNP	1345	4265	1	1160045	G
SNP	1346	4266	1	1161805	A
SNP	1347	4267	1	1162685	T
SNP	1348	4268	1	1163133	C
SNP	1349	4269	1	1163898	C
SNP	1350	4270	1	1165104	A
SNP	1351	4271	1	1165299	G
SNP	1352	4272	1	1167274	A
SNP	1353	4273	1	1169400	G
SNP	1354	4274	1	1169888	A
SNP	1355	4275	1	1171915	T
SNP	1356	4276	1	1172728	T
DEL	1357	5707,5826	1	1173410	41	repeat_length=41	repeat_new_copies=1	repeat_ref_copies=2
SNP	1358	4277	1	1173743	C
SNP	1359	4278	1	1174460	G
SNP	1360	4279	1	1174866	G
SNP	1361	4280	1	1175209	G
SNP	1362	4281	1	1176838	T
SNP	1363	4282	1	1182741	G
SNP	1364	4283	1	1183770	C
SNP	1365	4284	1	1189035	A
INS	1366	4285	1	1189737	A	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=A
SNP	1367	4286	1	1189918	G
SNP	1368	4287	1	1190423	A
SNP	1369	4288	1	1190635	G
SNP	1370	4289	1	1190743	C
SNP	1371	4290	1	1191158	A
SNP	1372	4291	1	1193675	T
SNP	1373	4292	1	1195528	G
SNP	1374	4293	1	1197822	A
SNP	1375	4294	1	1198284	T
SNP	1376	4295	1	1198533	C
SNP	1377	4296	1	1199857	C
SNP	1378	4297	1	1200079	T
SNP	1379	4298	1	1202990	T
SNP	1380	4299	1	1203885	C
SNP	1381	4301	1	1204880	T
SNP	1382	4302	1	1204909	C
SNP	1383	4303	1	1204912	G
SNP	1384	4304	1	1204918	A
SNP	1385	4305	1	1204933	C
SNP	1386	4306	1	1207147	A
SNP	1387	4307	1	1212997	C
SNP	1388	4308	1	1217408	C
SNP	1389	4309	1	1222067	G
SNP	1390	4310	1	1222976	T
SNP	1391	4314	1	1225157	T
SNP	1392	4315	1	1227095	C
SNP	1393	4316	1	1227133	A
SNP	1394	4317	1	1228689	T
SNP	1395	4318	1	1228821	T
SNP	1396	4319	1	1229002	T
SNP	1397	4320	1	1230165	T
SNP	1398	4321	1	1231647	C
SNP	1399	4322	1	1232512	T
SNP	1400	4323	1	1237163	A
SNP	1401	4324	1	1241746	T
SNP	1402	4325	1	1244705	T
SNP	1403	4326	1	1247595	G
DEL	1404	4327	1	1247786	1
SNP	1405	4328	1	1247929	A
SNP	1406	4329	1	1248097	C
SNP	1407	4330	1	1248410	C
SNP	1408	4331	1	1248942	C
SNP	1409	4332	1	1249979	G
SNP	1410	4335	1	1253428	C
SNP	1411	4336	1	1255865	G
SNP	1412	4337	1	1258049	A
SNP	1413	4338	1	1258263	T
SNP	1414	4339	1	1259088	C
SNP	1415	4340	1	1261780	T
SNP	1416	4341	1	1261852	T
SNP	1417	4342	1	1262120	T
SNP	1418	4343	1	1262835	G
SNP	1419	4344	1	1263388	T
SNP	1420	4345	1	1265402	C
SNP	1421	4346	1	1266943	T
SNP	1422	4347	1	1267450	A
SNP	1423	4348	1	1267971	C
SNP	1424	4349	1	1273694	G
SNP	1425	4350	1	1275304	C
SNP	1426	4351	1	1276385	T
INS	1427	4352,4353	1	1277426	TG
SNP	1428	4354	1	1278303	C
SNP	1429	4355	1	1278402	C
SNP	1430	4356	1	1278456	T
SNP	1431	4357	1	1280179	A
SNP	1432	4358	1	1284605	G
SNP	1433	4359	1	1286089	G
SNP	1434	4360	1	1288392	A
SNP	1435	4361	1	1289092	G
SNP	1436	4362	1	1289721	G
SNP	1437	4363	1	1290199	T
SNP	1438	4364	1	1292695	C
SNP	1439	4365	1	1293638	C
SNP	1440	4366	1	1294580	G
SNP	1441	4367	1	1295009	G
SNP	1442	4368	1	1295167	C
SNP	1443	4369	1	1295185	C
SNP	1444	4370	1	1295197	T
SNP	1445	4371	1	1295214	A
SUB	1446	4372,4373,4374,4375	1	1295234	4	TTTG
SNP	1447	4376	1	1295305	C
SNP	1448	4377	1	1295311	G
SNP	1449	4378	1	1295345	C
SNP	1450	4379	1	1295347	C
SNP	1451	4380	1	1295791	C
SNP	1452	4381	1	1295938	G
SNP	1453	4382	1	1295968	C
SNP	1454	4383	1	1295977	C
SNP	1455	4384	1	1295981	C
SNP	1456	4385	1	1295987	T
SUB	1457	4386,4387	1	1296169	2	TT
SNP	1458	4388	1	1296205	A
SNP	1459	4389	1	1296230	T
SNP	1460	4390	1	1296250	C
SNP	1461	4391	1	1296253	T
SNP	1462	4392	1	1296270	T
SNP	1463	4393	1	1297239	G
SNP	1464	4394	1	1297329	A
SNP	1465	4395	1	1297335	A
SNP	1466	4396	1	1299538	T
SNP	1467	4397	1	1300164	T
SNP	1468	4398	1	1301279	C
SNP	1469	4408	1	1302484	G
SNP	1470	4409	1	1302493	A
SNP	1471	4410	1	1302496	G
SNP	1472	4411	1	1302547	G
SNP	1473	4412	1	1302565	C
SNP	1474	4413	1	1302624	C
SUB	1475	4414,4415,4416	1	1302667	3	GTA
SNP	1476	4417	1	1302675	C
SUB	1477	4418,4419	1	1302677	2	CC
SNP	1478	4420	1	1302687	A
SNP	1479	4421	1	1302704	A
SUB	1480	4422,4423	1	1302715	2	AA
SNP	1481	4424	1	1302728	C
SUB	1482	4425,4426	1	1302730	2	TC
SNP	1483	4427	1	1302737	A
SNP	1484	4428	1	1302751	G
SNP	1485	4429	1	1302753	A
SNP	1486	4430	1	1303792	T
SNP	1487	4431	1	1303817	A
SNP	1488	4432	1	1305414	C
SNP	1489	4433	1	1306878	G
SNP	1490	4434	1	1309281	A
SNP	1491	4435	1	1309778	C
DEL	1492	5836	1	1311549	20
SNP	1493	4436	1	1311569	G
INS	1494	5837	1	1311828	TAT
SNP	1495	4437	1	1312578	A
SNP	1496	4438	1	1312755	C
SNP	1497	4439	1	1312858	C
SNP	1498	4440	1	1312911	C
SNP	1499	4441	1	1313170	G
DEL	1500	5714,5838	1	1313948	3546
SNP	1501	4442	1	1318864	C
SNP	1502	4443	1	1319007	A
SNP	1503	4444	1	1320583	A
SNP	1504	4445	1	1320928	A
SNP	1505	4447	1	1323630	T
SNP	1506	4448	1	1324643	G
SNP	1507	4449	1	1326250	A
SNP	1508	4450	1	1327290	T
SNP	1509	4451	1	1327549	T
SNP	1510	4452	1	1327590	A
SNP	1511	4453	1	1329512	G
SNP	1512	4454	1	1331601	C
SNP	1513	4455	1	1331955	C
SNP	1514	4457	1	1332890	G
SNP	1515	4458	1	1334647	G
SNP	1516	4459	1	1335011	T
SNP	1517	4460	1	1337135	C
SNP	1518	4461	1	1338802	G
SNP	1519	4462	1	1339258	G
SNP	1520	4463	1	1340326	A
SNP	1521	4464	1	1341568	A
SNP	1522	4465	1	1341601	C
SNP	1523	4466	1	1341822	C
SNP	1524	4467	1	1345462	G
SNP	1525	4468	1	1345465	A
SNP	1526	4469	1	1346865	G
SNP	1527	4470	1	1347390	G
SNP	1528	4471	1	1349077	T
SNP	1529	4472	1	1350742	C
SNP	1530	4473	1	1351406	C
SNP	1531	4474	1	1352962	A
SNP	1532	4476	1	1355316	C
SNP	1533	4477	1	1357381	G
SNP	1534	4478	1	1358533	A
SNP	1535	4479	1	1360409	C
SNP	1536	4480	1	1364043	T
SNP	1537	4481	1	1365666	T
SNP	1538	4482	1	1366202	T
SNP	1539	4483	1	1368273	T
SNP	1540	4484	1	1369521	A
SNP	1541	4485	1	1370295	A
SNP	1542	4486	1	1371409	G
SNP	1543	4487	1	1372778	A
INS	1544	4488,4489	1	1373123	CC	repeat_length=1	repeat_new_copies=9	repeat_ref_copies=7	repeat_seq=C
SNP	1545	4490	1	1373340	T
SNP	1546	4491	1	1375789	T
SNP	1547	4492	1	1376119	C
SNP	1548	4493	1	1376703	G
SNP	1549	4494	1	1378690	G
SNP	1550	4495	1	1379936	C
SNP	1551	4496	1	1381019	T
SNP	1552	4497	1	1384904	T
SNP	1553	4498	1	1388845	C
SNP	1554	4499	1	1389153	G
SNP	1555	4500	1	1390769	C
SNP	1556	4501	1	1391939	C
SNP	1557	4502	1	1392512	T
SNP	1558	4503	1	1392721	A
INS	1559	4504	1	1392829	G
SNP	1560	4505	1	1393724	C
SNP	1561	4506	1	1394030	C
SNP	1562	4507	1	1395178	A
SNP	1563	4508	1	1395937	C
SNP	1564	4509	1	1397387	C
INS	1565	5841	1	1398674	CCCAACTTA	repeat_length=9	repeat_new_copies=2	repeat_ref_copies=1	repeat_seq=CCCAACTTA
DEL	1566	5715,5843	1	1402084	603
INS	1567	4512	1	1403102	A	repeat_length=1	repeat_new_copies=9	repeat_ref_copies=8	repeat_seq=A
SNP	1568	4513	1	1403210	T
SNP	1569	4514	1	1403588	C
SNP	1570	4515	1	1403713	C
SNP	1571	4516	1	1403791	A
SNP	1572	4517	1	1404403	C
SNP	1573	4518	1	1406481	G
SNP	1574	4519	1	1406545	C
SNP	1575	4520	1	1406721	T
SNP	1576	4521	1	1406822	G
SNP	1577	4522	1	1407109	A
DEL	1578	5716,5844	1	1407328	849
SNP	1579	4523	1	1414007	T
SNP	1580	4524	1	1414059	A
SNP	1581	4525	1	1417312	C
SNP	1582	4526	1	1418532	G
SNP	1583	4527	1	1418936	C
SNP	1584	4529	1	1422404	A
SNP	1585	4530	1	1423081	T
SNP	1586	4531	1	1423200	C
SNP	1587	4533	1	1424400	G
SNP	1588	4534	1	1424953	G
SNP	1589	4535	1	1428755	T
SNP	1590	4536	1	1429180	G
SNP	1591	4539	1	1431000	C
SNP	1592	4540	1	1431369	C
SNP	1593	4541	1	1435445	G
SNP	1594	4542	1	1435480	T
SNP	1595	4543	1	1435530	T
SNP	1596	4544	1	1435913	C
SNP	1597	4545	1	1435942	C
SNP	1598	4546	1	1436106	A
SNP	1599	4547	1	1436655	A
SNP	1600	4548	1	1438319	G
SNP	1601	4549	1	1438352	T
SNP	1602	4550	1	1440560	A
SNP	1603	4551	1	1441872	T
SNP	1604	4552	1	1442309	A
SNP	1605	4553	1	1442646	A
SNP	1606	4554	1	1442716	C
INS	1607	5846	1	1445347	GCCT
DEL	1608	5718,5847	1	1446089	10
SNP	1609	4555	1	1446705	G
SNP	1610	4556	1	1447483	G
SNP	1611	4557	1	1448626	T
DEL	1612	4558,4559	1	1450762	2	repeat_length=1	repeat_new_copies=3	repeat_ref_copies=5	repeat_seq=G
SNP	1613	4560	1	1453421	C
SNP	1614	4561	1	1453714	C
SNP	1615	4562	1	1453770	A
SNP	1616	4565	1	1456366	G
SNP	1617	4566	1	1457178	T
SNP	1618	4567	1	1458866	A
SNP	1619	4568	1	1460490	T
SNP	1620	4569	1	1460494	C
SNP	1621	4570	1	1460496	T
SNP	1622	4571	1	1460502	T
SNP	1623	4572	1	1460508	T
SNP	1624	4573	1	1460514	T
SNP	1625	4574	1	1460517	A
SNP	1626	4575	1	1460523	G
SNP	1627	4576	1	1460529	T
SNP	1628	4577	1	1460571	A
SNP	1629	4578	1	1460591	A
INS	1630	4579	1	1460638	T
SUB	1631	4580,4581	1	1460639	2	GA
SUB	1632	4582,4583	1	1460643	2	AA
SUB	1633	4584,4585,4586	1	1460647	2	TCA
SNP	1634	4587	1	1460655	T
SNP	1635	4588	1	1460683	C
SUB	1636	4589,4590	1	1460722	2	TA
SNP	1637	4591	1	1460725	C
SNP	1638	4592	1	1460735	T
SNP	1639	4593	1	1460771	C
SUB	1640	5720,5849	1	1460808	737	TACGTGCTTGAATTTATGCTTACAT
SNP	1641	4594	1	1461547	T
SNP	1642	4595	1	1461607	C
SNP	1643	4596	1	1461621	C
SNP	1644	4597	1	1461627	G
SNP	1645	4598	1	1461636	G
SNP	1646	4599	1	1461655	T
SUB	1647	4600,4601	1	1461661	2	TC
SNP	1648	4602	1	1461668	C
SNP	1649	4603	1	1461672	T
SNP	1650	4604	1	1461676	A
SUB	1651	4605,4606,4607	1	1461679	3	GAA
SNP	1652	4608	1	1461683	T
SNP	1653	4609	1	1461690	A
SNP	1654	4610	1	1461751	A
SNP	1655	4611	1	1463085	T
SNP	1656	4612	1	1466048	G
SNP	1657	4613	1	1466907	G
SNP	1658	4614	1	1467056	T
SNP	1659	4616	1	1467548	G
SNP	1660	4617	1	1468810	C
SNP	1661	4618	1	1469423	A
SNP	1662	4619	1	1470340	T
SNP	1663	4620	1	1471283	C
SNP	1664	4621	1	1472067	C
SNP	1665	4622	1	1474335	G
SNP	1666	4623	1	1475279	A
SNP	1667	4624	1	1476242	T
SNP	1668	4625	1	1476316	A
SNP	1669	4626	1	1476333	A
SNP	1670	4627	1	1476863	C
SNP	1671	4628	1	1479155	A
SNP	1672	4629	1	1479308	G
SNP	1673	4630	1	1480181	A
SNP	1674	4631	1	1480244	G
SNP	1675	4632	1	1480321	A
SNP	1676	4633	1	1480883	C
SNP	1677	4634	1	1482170	T
SNP	1678	4635	1	1482317	T
SNP	1679	4636	1	1483359	T
SNP	1680	4637	1	1483476	T
DEL	1681	5721,5850	1	1483906	4	repeat_length=4	repeat_new_copies=1	repeat_ref_copies=2	repeat_seq=TCTA
DEL	1682	4638	1	1486192	1
SNP	1683	4639	1	1487008	A
SNP	1684	4640	1	1487680	C
SNP	1685	4641	1	1487905	G
SNP	1686	4642	1	1488106	T
SNP	1687	4643	1	1490575	G
SNP	1688	4644	1	1493070	C
SNP	1689	4645	1	1494806	C
SNP	1690	4646	1	1496524	A
SNP	1691	4647	1	1496590	C
SNP	1692	4648	1	1498293	T
SNP	1693	4651	1	1499142	G
SNP	1694	4652	1	1499748	T
SNP	1695	4656	1	1501223	C
SNP	1696	4657	1	1501999	T
SNP	1697	4658	1	1502204	A
SNP	1698	4659	1	1503901	A
SNP	1699	4660	1	1504561	A
SNP	1700	4661	1	1504952	A
SNP	1701	4662	1	1505836	T
INS	1702	5851	1	1506215	TTT
INS	1703	4663	1	1506852	T
INS	1704	4664	1	1507807	C	repeat_length=1	repeat_new_copies=9	repeat_ref_copies=8	repeat_seq=C
SNP	1705	4665	1	1509495	T
SNP	1706	4666	1	1510134	C
SNP	1707	4667	1	1510631	G
SNP	1708	4668	1	1510895	T
SNP	1709	4669	1	1511138	A
DEL	1710	5723,5852	1	1511387	3	repeat_length=3	repeat_new_copies=2	repeat_ref_copies=3	repeat_seq=ATT
SNP	1711	4670	1	1512662	C
SNP	1712	4671	1	1513975	T
SNP	1713	4672	1	1514477	A
SNP	1714	4673	1	1514516	G
SNP	1715	4674	1	1514657	T
DEL	1716	4675	1	1515772	1
SNP	1717	4676	1	1515804	C
DEL	1718	5724,5853	1	1516263	13	repeat_length=13	repeat_new_copies=2	repeat_ref_copies=3	repeat_seq=GTAACGCCATTTG
SNP	1719	4678	1	1516750	G
SNP	1720	4679	1	1518092	T
SNP	1721	4680	1	1519627	C
SNP	1722	4681	1	1519786	C
SNP	1723	4682	1	1520256	G
SNP	1724	4683	1	1522242	C
SNP	1725	4684	1	1523341	G
SNP	1726	4685	1	1523951	C
SNP	1727	4686	1	1525964	G
SNP	1728	4687	1	1526603	G
SNP	1729	4688	1	1528208	C
INS	1730	4689	1	1528373	T
SNP	1731	4690	1	1528492	C
SNP	1732	4691	1	1529128	T
SNP	1733	4692	1	1529762	A
INS	1734	4693	1	1529845	A	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=7	repeat_seq=A
SNP	1735	4694	1	1529854	T
SNP	1736	4695	1	1531985	G
SNP	1737	4696	1	1532640	T
SNP	1738	4697	1	1534237	C
SNP	1739	4698	1	1534407	T
SNP	1740	4699	1	1534494	T
SNP	1741	4700	1	1536229	T
SNP	1742	4701	1	1536556	C
SNP	1743	4704	1	1541436	G
SNP	1744	4705	1	1541815	C
SNP	1745	4706	1	1541821	T
SNP	1746	4707	1	1542333	G
SNP	1747	4708	1	1542857	T
SNP	1748	4709	1	1542945	T
SNP	1749	4710	1	1543592	A
SNP	1750	4711	1	1545010	G
SNP	1751	4712	1	1545302	T
SNP	1752	4713	1	1545789	C
SNP	1753	4715	1	1546930	A
SNP	1754	4716	1	1547685	G
SNP	1755	4717	1	1548402	G
SNP	1756	4718	1	1551753	G
SNP	1757	4719	1	1552290	T
SNP	1758	4720	1	1552336	G
SNP	1759	4721	1	1553037	T
SNP	1760	4722	1	1555090	A
SNP	1761	4723	1	1557721	A
SNP	1762	4724	1	1558890	G
SNP	1763	4725	1	1561107	A
INS	1764	4726	1	1561231	A	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=5	repeat_seq=A
SNP	1765	4727	1	1561389	C
DEL	1766	5725,5856	1	1564818	3
SNP	1767	4728	1	1565705	T
SNP	1768	4729	1	1565790	G
SNP	1769	4730	1	1567909	C
SNP	1770	4731	1	1567917	G
INS	1771	5857	1	1568439	AATAA
SNP	1772	4732	1	1568519	A
SNP	1773	4733	1	1568920	T
SNP	1774	4734	1	1569091	T
SNP	1775	4735	1	1569293	C
SNP	1776	4736	1	1569355	C
SNP	1777	4737	1	1571143	T
SUB	1778	5726,5858	1	1572201	947	CCGATCGGATTATGGTCATGAAAAAAGGCGTGATCGAACAAATCGATACGCCG
SNP	1779	4738	1	1574190	G
SNP	1780	4739	1	1574406	A
SNP	1781	4740	1	1575057	A
SNP	1782	4741	1	1576278	A
SNP	1783	4742	1	1577268	C
SNP	1784	4743	1	1577476	T
SNP	1785	4744	1	1578230	T
SNP	1786	4745	1	1578444	T
SNP	1787	4746	1	1579250	G
SNP	1788	4747	1	1580321	A
SNP	1789	4748	1	1580477	G
SNP	1790	4749	1	1580534	G
SNP	1791	4751	1	1587049	C
SNP	1792	4752	1	1588297	G
SNP	1793	4753	1	1589402	C
SNP	1794	4754	1	1590353	G
SNP	1795	4755	1	1590433	G
SNP	1796	4756	1	1591045	C
SNP	1797	4757	1	1591079	T
SNP	1798	4758	1	1594371	T
SNP	1799	4759	1	1594736	G
SNP	1800	4760	1	1595284	A
SNP	1801	4761	1	1596308	T
SNP	1802	4762	1	1597222	A
SNP	1803	4763	1	1599230	C
SNP	1804	4764	1	1602084	G
SNP	1805	4765	1	1605778	C
SNP	1806	4766	1	1606104	T
SNP	1807	4767	1	1608823	C
SNP	1808	4768	1	1610096	C
SNP	1809	4770	1	1610786	T
SNP	1810	4771	1	1612351	A
SNP	1811	4772	1	1612775	C
SNP	1812	4773	1	1613753	A
SNP	1813	4774	1	1613815	T
SNP	1814	4775	1	1613817	G
SNP	1815	4776	1	1613821	T
SNP	1816	4777	1	1613868	G
SNP	1817	4778	1	1613871	C
SNP	1818	4779	1	1617679	G
SNP	1819	4780	1	1617894	T
SNP	1820	4781	1	1618173	C
SNP	1821	4789	1	1620318	A
SNP	1822	4790	1	1620830	A
SNP	1823	4791	1	1621288	A
SNP	1824	4792	1	1621683	C
SNP	1825	4793	1	1622930	G
SNP	1826	4794	1	1623404	T
SNP	1827	4795	1	1624033	C
SNP	1828	4797	1	1625588	G
SNP	1829	4798	1	1626788	G
SNP	1830	4799	1	1627418	G
SNP	1831	4800	1	1627811	C
SNP	1832	4801	1	1628158	T
SNP	1833	4802	1	1632862	T
SNP	1834	4804	1	1638189	T
SNP	1835	4805	1	1638240	A
SNP	1836	4806	1	1639975	G
SNP	1837	4807	1	1642495	G
SNP	1838	4808	1	1642747	G
SNP	1839	4809	1	1644031	T
SNP	1840	4810	1	1644402	T
SNP	1841	4812	1	1646320	A
SNP	1842	4813	1	1646591	G
SNP	1843	4814	1	1647331	A
SNP	1844	4815	1	1648808	C
SNP	1845	4816	1	1653015	T
SNP	1846	4817	1	1658140	A
SNP	1847	4818	1	1659724	T
SNP	1848	4819	1	1663734	A
SNP	1849	4820	1	1663801	T
SNP	1850	4821	1	1664670	T
SNP	1851	4822	1	1665138	C
SNP	1852	4823	1	1665179	A
SNP	1853	4824	1	1665616	C
INS	1854	4825	1	1667669	T
SNP	1855	4826	1	1669506	T
SNP	1856	4827	1	1669521	G
SNP	1857	4828	1	1669896	C
SNP	1858	4829	1	1671460	C
SNP	1859	4831	1	1673896	G
SNP	1860	4832	1	1677477	C
SNP	1861	4833	1	1683478	C
SNP	1862	4834	1	1684133	A
SNP	1863	4835	1	1685051	G
SNP	1864	4836	1	1685301	T
SNP	1865	4837	1	1687525	C
SNP	1866	4838	1	1687704	A
SNP	1867	4839	1	1688866	A
SNP	1868	4840	1	1690701	C
SNP	1869	4841	1	1693773	A
SNP	1870	4842	1	1697809	G
SNP	1871	4843	1	1698685	T
SNP	1872	4844	1	1699860	A
SNP	1873	4845	1	1700180	A
SNP	1874	4846	1	1701809	A
SNP	1875	4849	1	1702301	A
SNP	1876	4850	1	1702955	T
SNP	1877	4851	1	1703056	G
SNP	1878	4852	1	1704601	C
SNP	1879	4853	1	1707322	T
SNP	1880	4854	1	1707861	T
SNP	1881	4855	1	1709422	T
SNP	1882	4856	1	1711757	G
SNP	1883	4859	1	1716271	G
SNP	1884	4860	1	1718219	T
SNP	1885	4861	1	1718579	T
SNP	1886	4862	1	1718713	T
SNP	1887	4863	1	1719365	T
SNP	1888	4864	1	1722352	C
SNP	1889	4865	1	1722985	G
SNP	1890	4868	1	1723981	G
SNP	1891	4869	1	1724029	C
SNP	1892	4870	1	1724447	C
SNP	1893	4871	1	1725710	G
SNP	1894	4872	1	1726342	G
SNP	1895	4874	1	1734216	A
SNP	1896	4875	1	1739301	T
SNP	1897	4876	1	1739340	A
SNP	1898	4877	1	1741491	A
SNP	1899	4878	1	1742937	A
SNP	1900	4879	1	1745805	G
SNP	1901	4880	1	1748003	G
SNP	1902	4881	1	1748668	C
SNP	1903	4882	1	1750099	A
SNP	1904	4883	1	1750736	A
SNP	1905	4884	1	1752607	T
SNP	1906	4885	1	1757888	G
SNP	1907	4886	1	1761226	G
SNP	1908	4887	1	1762049	C
SNP	1909	4888	1	1763289	C
SNP	1910	4889	1	1763973	G
SNP	1911	4890	1	1765465	A
SNP	1912	4891	1	1766697	A
SNP	1913	4892	1	1770382	T
SNP	1914	4893	1	1771109	A
SNP	1915	4894	1	1773418	G
SNP	1916	4895	1	1773657	G
SNP	1917	4896	1	1774706	A
DEL	1918	5731,5862	1	1775049	7	repeat_length=7	repeat_new_copies=1	repeat_ref_copies=2	repeat_seq=AAATTAA
SNP	1919	4901	1	1776597	T
SNP	1920	4902	1	1778795	C
SNP	1921	4903	1	1779209	C
SNP	1922	4904	1	1781842	G
SNP	1923	4905	1	1781893	A
SNP	1924	4906	1	1782016	C
SNP	1925	4907	1	1782813	T
SNP	1926	4908	1	1784825	A
SNP	1927	4909	1	1785263	G
SNP	1928	4910	1	1785266	G
SNP	1929	4911	1	1785626	A
DEL	1930	5732,5864	1	1786508	1291
SNP	1931	4912	1	1789821	C
SNP	1932	4913	1	1790704	T
SNP	1933	4914	1	1792096	T
SNP	1934	4915	1	1793278	C
SNP	1935	4916	1	1794192	C
SNP	1936	4917	1	1794973	A
SNP	1937	4918	1	1795179	C
SNP	1938	4919	1	1796242	C
SNP	1939	4920	1	1796399	A
SNP	1940	4921	1	1797011	G
SNP	1941	4922	1	1800240	A
DEL	1942	4923	1	1801641	1	repeat_length=1	repeat_new_copies=4	repeat_ref_copies=5	repeat_seq=A
SNP	1943	4924	1	1804418	T
SNP	1944	4925	1	1805952	G
SNP	1945	4926	1	1806056	G
SNP	1946	4927	1	1807055	A
SNP	1947	4928	1	1807616	T
SNP	1948	4929	1	1807846	A
SNP	1949	4930	1	1807912	C
SNP	1950	4931	1	1808404	C
SNP	1951	4932	1	1808429	A
SNP	1952	4933	1	1808947	C
SNP	1953	4934	1	1809839	A
SNP	1954	4935	1	1809959	C
SNP	1955	4936	1	1810480	A
SNP	1956	4937	1	1811241	C
SNP	1957	4938	1	1811311	A
SNP	1958	4939	1	1813329	C
SNP	1959	4940	1	1813381	C
SNP	1960	4941	1	1813732	C
SNP	1961	4942	1	1815930	C
SNP	1962	4943	1	1816100	T
SNP	1963	4944	1	1816165	A
DEL	1964	4945	1	1818112	1	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=9	repeat_seq=T
SNP	1965	4946	1	1818292	C
SNP	1966	4947	1	1819444	T
SNP	1967	4948	1	1819985	C
SNP	1968	4949	1	1820395	A
SNP	1969	4950	1	1826563	T
SNP	1970	4951	1	1829307	A
SNP	1971	4954	1	1835350	C
SNP	1972	4955	1	1835761	G
SNP	1973	4960	1	1838486	G
SNP	1974	4961	1	1838782	G
SNP	1975	4962	1	1839354	T
SNP	1976	4963	1	1840993	C
SNP	1977	4964	1	1842061	C
SNP	1978	4965	1	1843153	G
SNP	1979	4966	1	1850366	G
SNP	1980	4967	1	1854230	G
SNP	1981	4968	1	1856594	G
SNP	1982	4969	1	1856768	T
SNP	1983	4970	1	1857405	C
SNP	1984	4971	1	1857618	G
SNP	1985	4972	1	1857727	G
SNP	1986	4973	1	1858886	A
SNP	1987	4974	1	1867444	G
SNP	1988	4975	1	1869801	A
SNP	1989	4976	1	1870101	A
SNP	1990	4977	1	1870109	A
SNP	1991	4978	1	1870135	A
SNP	1992	4979	1	1870295	T
SNP	1993	4980	1	1871966	G
SNP	1994	4981	1	1872124	C
SNP	1995	4982	1	1872968	C
SNP	1996	4983	1	1873674	C
SNP	1997	4984	1	1882310	A
SNP	1998	4985	1	1882363	C
SNP	1999	4986	1	1884642	T
SNP	2000	4987	1	1885060	G
SNP	2001	4988	1	1885076	A
SNP	2002	4989	1	1887213	A
SNP	2003	4990	1	1888068	A
SNP	2004	4991	1	1888341	T
SNP	2005	4992	1	1888801	T
SNP	2006	4993	1	1889419	A
SNP	2007	4994	1	1891747	G
SNP	2008	4995	1	1892530	G
SNP	2009	4996	1	1893014	T
SNP	2010	4997	1	1894195	C
SNP	2011	4998	1	1894230	C
SNP	2012	5000	1	1896286	C
SNP	2013	5001	1	1896754	C
SNP	2014	5002	1	1896811	G
SNP	2015	5003	1	1896865	T
SNP	2016	5004	1	1896910	G
SNP	2017	5005	1	1899376	A
SNP	2018	5006	1	1900976	T
SNP	2019	5007	1	1902603	A
SNP	2020	5008	1	1904067	C
SNP	2021	5009	1	1907193	G
SNP	2022	5010	1	1908013	A
SNP	2023	5011	1	1909523	C
SNP	2024	5012	1	1909561	T
SNP	2025	5013	1	1910519	G
SNP	2026	5014	1	1910616	A
SNP	2027	5015	1	1911614	T
SNP	2028	5016	1	1914650	G
SNP	2029	5017	1	1915558	A
SNP	2030	5018	1	1917492	G
SNP	2031	5019	1	1918919	T
SNP	2032	5020	1	1919085	T
SNP	2033	5021	1	1919217	G
SNP	2034	5022	1	1920466	A
SNP	2035	5023	1	1923946	T
SNP	2036	5024	1	1923949	G
SNP	2037	5025	1	1924710	G
SNP	2038	5027	1	1926496	T
SNP	2039	5028	1	1926730	C
SNP	2040	5029	1	1927104	G
SNP	2041	5030	1	1927936	T
SNP	2042	5031	1	1928650	G
SNP	2043	5032	1	1929156	T
SNP	2044	5033	1	1929268	A
SNP	2045	5035	1	1930838	A
SNP	2046	5036	1	1933184	C
SNP	2047	5037	1	1933364	C
SNP	2048	5038	1	1933585	A
SNP	2049	5039	1	1933621	G
SNP	2050	5042	1	1936589	G
SNP	2051	5043	1	1936630	C
SNP	2052	5044	1	1940092	G
DEL	2053	5045	1	1940157	1	repeat_length=1	repeat_new_copies=5	repeat_ref_copies=6	repeat_seq=T
SNP	2054	5046	1	1941564	G
INS	2055	5047	1	1944260	T
SNP	2056	5048	1	1944652	G
SNP	2057	5049	1	1945184	C
SNP	2058	5050	1	1945554	A
SNP	2059	5051	1	1946002	A
DEL	2060	5053	1	1949407	1	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=9	repeat_seq=A
INS	2061	5874	1	1950561	ATT
SNP	2062	5054	1	1952276	G
SNP	2063	5058	1	1953059	T
SNP	2064	5060	1	1953657	T
SNP	2065	5061	1	1954971	G
SNP	2066	5062	1	1955055	T
SNP	2067	5063	1	1955244	C
SNP	2068	5064	1	1956821	A
SNP	2069	5065	1	1958121	A
SNP	2070	5066	1	1958967	A
SNP	2071	5067	1	1959382	G
SNP	2072	5068	1	1960576	T
SNP	2073	5069	1	1961566	G
SNP	2074	5070	1	1962070	C
SNP	2075	5071	1	1962709	T
SNP	2076	5072	1	1964214	G
SNP	2077	5073	1	1964663	C
SNP	2078	5074	1	1966510	A
SNP	2079	5075	1	1966524	A
SNP	2080	5076	1	1966936	G
SNP	2081	5077	1	1967829	C
SNP	2082	5078	1	1968720	A
SNP	2083	5079	1	1968905	C
SNP	2084	5080	1	1969362	G
SNP	2085	5081	1	1970853	C
SNP	2086	5082	1	1970881	T
SNP	2087	5083	1	1971247	T
SNP	2088	5084	1	1971251	C
SNP	2089	5085	1	1971839	C
SNP	2090	5086	1	1972594	G
SNP	2091	5087	1	1974745	T
SNP	2092	5088	1	1974952	C
SNP	2093	5089	1	1975989	C
SNP	2094	5090	1	1978545	C
SNP	2095	5091	1	1978898	A
SNP	2096	5092	1	1979823	T
SNP	2097	5093	1	1979952	T
SNP	2098	5094	1	1981367	A
SNP	2099	5095	1	1981964	C
SNP	2100	5096	1	1982308	G
SNP	2101	5097	1	1982654	C
SNP	2102	5098	1	1982675	C
SNP	2103	5099	1	1982699	C
SNP	2104	5100	1	1982709	C
SNP	2105	5101	1	1982730	C
SNP	2106	5102	1	1982753	G
SNP	2107	5103	1	1982765	C
SNP	2108	5104	1	1982792	C
SUB	2109	5105,5106	1	1982798	2	GC
SNP	2110	5107	1	1982801	G
SNP	2111	5108	1	1982837	C
SNP	2112	5109	1	1982842	A
SNP	2113	5110	1	1982873	T
INS	2114	5111,5112	1	1982883	TC
SNP	2115	5113	1	1982887	T
DEL	2116	5114	1	1982896	1
SNP	2117	5115	1	1983032	A
SNP	2118	5116	1	1983092	T
SNP	2119	5117	1	1983098	A
SNP	2120	5118	1	1983113	A
SNP	2121	5119	1	1983170	T
SNP	2122	5120	1	1983182	G
SNP	2123	5121	1	1983209	T
SNP	2124	5122	1	1983212	T
SNP	2125	5123	1	1983218	C
SNP	2126	5124	1	1983257	G
SNP	2127	5125	1	1983416	T
SNP	2128	5126	1	1983446	G
SNP	2129	5127	1	1983461	T
SNP	2130	5128	1	1983467	T
SNP	2131	5129	1	1983497	T
SNP	2132	5130	1	1983539	T
SNP	2133	5131	1	1983569	C
SNP	2134	5132	1	1983674	C
SNP	2135	5133	1	1983677	T
SNP	2136	5134	1	1983713	G
SNP	2137	5135	1	1983740	C
SNP	2138	5136	1	1983820	T
SNP	2139	5137	1	1983877	A
SNP	2140	5138	1	1983957	A
SNP	2141	5139	1	1983985	G
SNP	2142	5140	1	1984003	T
SNP	2143	5141	1	1984013	T
SNP	2144	5142	1	1984036	C
SNP	2145	5143	1	1984051	C
SNP	2146	5144	1	1984069	G
SNP	2147	5145	1	1984090	C
SNP	2148	5146	1	1984114	C
SNP	2149	5147	1	1984138	A
SNP	2150	5148	1	1984161	C
SNP	2151	5149	1	1984264	C
SNP	2152	5150	1	1984285	C
SNP	2153	5151	1	1984291	C
SNP	2154	5152	1	1984330	G
SNP	2155	5153	1	1984334	G
SNP	2156	5154	1	1984363	T
SNP	2157	5155	1	1984402	C
SNP	2158	5156	1	1984405	G
SNP	2159	5157	1	1984414	T
SNP	2160	5158	1	1984423	T
SNP	2161	5159	1	1984430	T
SNP	2162	5160	1	1984441	G
SNP	2163	5161	1	1984450	T
SNP	2164	5162	1	1984504	G
SNP	2165	5163	1	1984513	A
SNP	2166	5164	1	1984531	G
SNP	2167	5165	1	1984594	T
SNP	2168	5166	1	1984609	T
SNP	2169	5167	1	1984633	A
SNP	2170	5168	1	1984669	G
SNP	2171	5169	1	1984693	T
SNP	2172	5170	1	1984696	C
SNP	2173	5171	1	1984726	G
SNP	2174	5172	1	1984762	T
SNP	2175	5173	1	1984777	T
INS	2176	5174	1	1984844	A
DEL	2177	5175	1	1984851	1
SNP	2178	5176	1	1984853	C
SNP	2179	5177	1	1984858	A
INS	2180	5178	1	1984865	A	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=A
SNP	2181	5179	1	1984874	G
SUB	2182	5180,5181	1	1984876	2	GA
SUB	2183	5182,5183	1	1984900	1	CG
SNP	2184	5184	1	1984902	G
SNP	2185	5185	1	1984906	A
SUB	2186	5188,5189	1	1984962	2	GG
SNP	2187	5196	1	1984992	A
SNP	2188	5197	1	1984995	A
SNP	2189	5198	1	1985022	T
SNP	2190	5199	1	1985025	C
SNP	2191	5200	1	1985037	T
SNP	2192	5201	1	1985049	C
SNP	2193	5202	1	1985078	C
SNP	2194	5203	1	1985085	T
SNP	2195	5204	1	1985087	A
SNP	2196	5205	1	1985158	G
SNP	2197	5206	1	1985176	A
SNP	2198	5207	1	1985221	A
SNP	2199	5208	1	1985227	C
SNP	2200	5209	1	1985278	T
SNP	2201	5210	1	1985344	T
SNP	2202	5211	1	1985350	G
SNP	2203	5212	1	1985353	G
SNP	2204	5213	1	1985380	A
SNP	2205	5214	1	1985392	G
SNP	2206	5215	1	1985395	G
SNP	2207	5216	1	1985443	G
SNP	2208	5217	1	1985524	C
SNP	2209	5218	1	1985533	C
SNP	2210	5219	1	1985545	C
SNP	2211	5220	1	1985554	G
SNP	2212	5221	1	1985599	C
SNP	2213	5222	1	1985710	A
SNP	2214	5223	1	1985743	T
SNP	2215	5224	1	1985776	T
SNP	2216	5225	1	1985791	C
SNP	2217	5226	1	1985851	T
SNP	2218	5227	1	1985865	A
SNP	2219	5228	1	1985869	C
SNP	2220	5229	1	1985908	T
SNP	2221	5230	1	1985971	C
SNP	2222	5231	1	1985992	C
SNP	2223	5232	1	1986022	C
SNP	2224	5233	1	1986103	T
SNP	2225	5234	1	1986222	C
SNP	2226	5235	1	1986277	G
SNP	2227	5236	1	1986292	G
SNP	2228	5237	1	1986397	C
SNP	2229	5238	1	1986450	T
SNP	2230	5239	1	1986557	C
SNP	2231	5240	1	1986589	T
SNP	2232	5241	1	1986597	G
SNP	2233	5242	1	1986621	T
SNP	2234	5243	1	1986666	G
SNP	2235	5244	1	1986717	G
SNP	2236	5245	1	1986725	C
SNP	2237	5246	1	1986738	G
SNP	2238	5247	1	1986812	G
SNP	2239	5248	1	1986827	A
SNP	2240	5249	1	1986852	G
SNP	2241	5250	1	1986869	G
SNP	2242	5251	1	1986894	A
SNP	2243	5252	1	1986936	G
SNP	2244	5253	1	1986974	A
SNP	2245	5254	1	1987040	G
SNP	2246	5255	1	1987050	T
SNP	2247	5256	1	1987062	T
SNP	2248	5257	1	1987083	T
SNP	2249	5258	1	1987098	A
SNP	2250	5259	1	1987143	A
SNP	2251	5260	1	1987164	T
SNP	2252	5261	1	1987225	C
SNP	2253	5262	1	1987293	A
SNP	2254	5263	1	1987353	T
SNP	2255	5264	1	1987356	G
SNP	2256	5265	1	1987416	G
SNP	2257	5266	1	1987509	A
SNP	2258	5267	1	1987536	A
SNP	2259	5268	1	1987538	G
SNP	2260	5269	1	1987554	C
SNP	2261	5270	1	1987569	C
SNP	2262	5271	1	1987572	G
SNP	2263	5272	1	1987588	G
SNP	2264	5273	1	1987605	C
SNP	2265	5274	1	1987830	A
SNP	2266	5275	1	1987833	G
SNP	2267	5276	1	1987914	T
SNP	2268	5277	1	1987941	A
SNP	2269	5278	1	1987983	G
SNP	2270	5279	1	1987995	T
SNP	2271	5280	1	1988006	G
SNP	2272	5281	1	1988028	G
SNP	2273	5282	1	1988040	C
SUB	2274	5283,5284	1	1988054	2	GC
SNP	2275	5285	1	1988058	C
SNP	2276	5286	1	1988066	C
SNP	2277	5287	1	1988106	C
SNP	2278	5288	1	1988138	A
SNP	2279	5289	1	1988142	C
SNP	2280	5290	1	1988169	C
SNP	2281	5291	1	1988247	A
SNP	2282	5292	1	1988268	A
SNP	2283	5293	1	1988307	C
SNP	2284	5294	1	1988312	C
SNP	2285	5295	1	1988379	C
SNP	2286	5296	1	1988424	C
SNP	2287	5297	1	1988439	G
SNP	2288	5298	1	1988464	A
SNP	2289	5299	1	1988484	T
SNP	2290	5300	1	1988490	A
SNP	2291	5301	1	1988495	T
SNP	2292	5302	1	1988507	T
SNP	2293	5303	1	1988517	T
SNP	2294	5304	1	1988533	C
SNP	2295	5305	1	1988604	A
SNP	2296	5306	1	1988655	A
SNP	2297	5307	1	1988711	A
SNP	2298	5308	1	1988716	T
SNP	2299	5309	1	1988864	C
SNP	2300	5310	1	1988966	C
SNP	2301	5311	1	1988999	A
SNP	2302	5312	1	1989008	T
SNP	2303	5313	1	1989016	G
SNP	2304	5314	1	1989187	T
SNP	2305	5315	1	1989191	C
SNP	2306	5316	1	1989194	C
SNP	2307	5317	1	1989200	C
SNP	2308	5318	1	1989213	T
SNP	2309	5319	1	1989281	T
SNP	2310	5320	1	1989293	C
SNP	2311	5321	1	1989302	G
SNP	2312	5322	1	1989362	G
SNP	2313	5323	1	1989371	C
SNP	2314	5324	1	1989416	A
SNP	2315	5325	1	1989422	A
SNP	2316	5326	1	1989427	T
SNP	2317	5327	1	1989431	G
SNP	2318	5328	1	1989434	A
SNP	2319	5329	1	1989440	C
SNP	2320	5330	1	1989443	G
SNP	2321	5331	1	1989464	T
SNP	2322	5332	1	1989467	T
SNP	2323	5333	1	1989485	G
SNP	2324	5334	1	1989509	C
SNP	2325	5335	1	1989512	C
SNP	2326	5336	1	1989515	T
SNP	2327	5337	1	1989521	A
SNP	2328	5338	1	1989536	A
SNP	2329	5339	1	1989545	T
SNP	2330	5340	1	1989557	A
SNP	2331	5341	1	1989578	G
SNP	2332	5342	1	1989581	A
SNP	2333	5343	1	1989584	G
SNP	2334	5344	1	1989590	G
SNP	2335	5345	1	1989599	A
SNP	2336	5346	1	1989602	T
SNP	2337	5347	1	1989605	G
SNP	2338	5348	1	1989608	G
SNP	2339	5349	1	1989611	G
SUB	2340	5350,5351	1	1989616	2	TT
SNP	2341	5352	1	1989620	T
SNP	2342	5353	1	1989626	G
SNP	2343	5354	1	1989629	C
SNP	2344	5355	1	1989632	A
SNP	2345	5356	1	1989638	A
SNP	2346	5357	1	1989647	T
SNP	2347	5358	1	1989653	T
SNP	2348	5359	1	1989656	G
SNP	2349	5360	1	1989659	G
SNP	2350	5361	1	1989665	A
SNP	2351	5362	1	1989685	C
SNP	2352	5363	1	1989692	A
SNP	2353	5364	1	1989723	C
SNP	2354	5365	1	1989737	A
SNP	2355	5366	1	1989739	G
SNP	2356	5367	1	1989743	C
SNP	2357	5368	1	1989748	A
SNP	2358	5369	1	1989750	T
SNP	2359	5370	1	1989752	A
SNP	2360	5371	1	1990251	C
SNP	2361	5372	1	1992197	A
SNP	2362	5373	1	1993956	G
SNP	2363	5374	1	1994241	A
SNP	2364	5375	1	1994351	T
SNP	2365	5376	1	1994424	A
SNP	2366	5377	1	1994638	C
SNP	2367	5378	1	1994807	A
INS	2368	5379	1	1994999	T	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=T
SNP	2369	5380	1	1995223	G
SNP	2370	5381	1	1995272	C
SNP	2371	5382	1	1995284	T
SNP	2372	5383	1	1995308	C
SNP	2373	5384	1	1995341	T
SNP	2374	5385	1	1995375	C
SNP	2375	5386	1	1995431	C
SNP	2376	5387	1	1995464	A
SNP	2377	5388	1	1995575	T
SNP	2378	5389	1	1995577	C
SNP	2379	5390	1	1995588	T
SNP	2380	5391	1	1995762	G
SNP	2381	5392	1	1995771	A
SNP	2382	5393	1	1995795	G
SNP	2383	5394	1	1995822	G
SNP	2384	5395	1	1995837	C
SNP	2385	5396	1	1995840	G
SNP	2386	5397	1	1995843	T
SNP	2387	5398	1	1995846	C
SNP	2388	5399	1	1995848	A
SNP	2389	5400	1	1995894	G
SNP	2390	5401	1	1995903	C
SNP	2391	5402	1	1995934	T
SNP	2392	5403	1	1995951	A
SNP	2393	5404	1	1995957	C
SNP	2394	5405	1	1995960	T
SNP	2395	5406	1	1995985	T
SNP	2396	5407	1	1995990	C
SNP	2397	5408	1	1996038	C
SNP	2398	5409	1	1996088	G
SNP	2399	5410	1	1996092	C
SNP	2400	5411	1	1996094	A
SNP	2401	5412	1	1996149	T
SNP	2402	5413	1	1996173	A
SNP	2403	5414	1	1996236	A
SNP	2404	5415	1	1996239	A
SNP	2405	5416	1	1996260	T
SNP	2406	5417	1	1996266	T
SNP	2407	5418	1	1996272	T
SNP	2408	5419	1	1996281	A
SNP	2409	5420	1	1996407	G
SNP	2410	5421	1	1996415	G
SNP	2411	5422	1	1996422	G
SNP	2412	5423	1	1996464	G
SNP	2413	5424	1	1996491	A
SNP	2414	5425	1	1996495	A
SNP	2415	5426	1	1996498	A
SNP	2416	5427	1	1996504	G
SNP	2417	5428	1	1996515	A
SNP	2418	5429	1	1996648	G
SNP	2419	5430	1	1996754	C
SNP	2420	5431	1	1996764	G
SUB	2421	5432,5433,5434	1	1996816	3	GCG
SNP	2422	5435	1	1996824	C
SUB	2423	5436,5437	1	1996834	2	GC
SNP	2424	5438	1	1996941	C
SNP	2425	5439	1	1997161	A
SNP	2426	5440	1	1997181	A
SNP	2427	5441	1	1997200	G
SNP	2428	5442	1	1997209	T
SNP	2429	5443	1	1997247	C
SNP	2430	5444	1	1997253	T
SNP	2431	5445	1	1997262	A
SNP	2432	5446	1	1997299	T
SNP	2433	5447	1	1997311	A
SNP	2434	5448	1	1997313	A
SUB	2435	5449,5450,5451	1	1997319	3	GCG
SUB	2436	5452,5453	1	1997325	2	AT
SNP	2437	5454	1	1997337	T
SNP	2438	5455	1	1997345	C
SNP	2439	5456	1	1997358	G
SNP	2440	5457	1	1997361	G
SNP	2441	5458	1	1997374	G
SNP	2442	5459	1	1997380	T
SUB	2443	5460,5461	1	1997423	2	TG
SNP	2444	5462	1	1997427	A
SNP	2445	5463	1	1997454	A
SNP	2446	5464	1	1997485	G
SNP	2447	5465	1	1997567	T
SNP	2448	5466	1	1997633	G
SNP	2449	5467	1	1997671	C
SNP	2450	5468	1	1997710	C
SNP	2451	5469	1	1997737	G
SUB	2452	5470,5471	1	1997770	2	TA
SNP	2453	5472	1	1997819	T
SNP	2454	5473	1	1997822	C
SNP	2455	5474	1	1997918	T
SNP	2456	5475	1	1997939	G
SNP	2457	5476	1	1997957	G
SNP	2458	5477	1	1998013	A
SNP	2459	5478	1	1998017	T
SNP	2460	5479	1	1998054	A
SNP	2461	5480	1	1998070	A
SNP	2462	5481	1	1998110	A
SNP	2463	5482	1	1998119	A
SNP	2464	5483	1	1998233	T
SNP	2465	5484	1	1998239	T
SNP	2466	5485	1	1998241	A
SNP	2467	5486	1	1998299	A
SNP	2468	5487	1	1998401	G
SNP	2469	5488	1	1998407	T
SNP	2470	5489	1	1998409	C
SNP	2471	5490	1	1998427	C
SNP	2472	5491	1	1998465	G
SNP	2473	5492	1	1998485	C
SNP	2474	5493	1	1998520	G
SNP	2475	5494	1	1998542	G
SNP	2476	5495	1	1998552	G
SNP	2477	5496	1	1998554	C
SNP	2478	5497	1	1998604	C
SNP	2479	5498	1	1998617	T
SNP	2480	5499	1	1998646	A
SNP	2481	5500	1	1998677	T
SNP	2482	5501	1	1998692	G
SNP	2483	5502	1	1998695	G
SNP	2484	5503	1	1998701	T
SNP	2485	5504	1	1998773	A
SNP	2486	5505	1	1998797	A
SNP	2487	5506	1	1998800	A
SNP	2488	5507	1	1998839	A
SNP	2489	5508	1	1998878	T
SNP	2490	5509	1	1998882	C
SNP	2491	5510	1	1998893	A
SNP	2492	5511	1	1998907	G
SNP	2493	5512	1	1998944	G
SNP	2494	5513	1	1998947	G
SNP	2495	5514	1	1998950	A
SNP	2496	5515	1	1998974	G
SNP	2497	5516	1	1998986	T
SNP	2498	5517	1	1999014	T
SUB	2499	5518,5519	1	1999049	2	CT
SNP	2500	5520	1	1999055	C
SNP	2501	5521	1	1999096	T
SNP	2502	5522	1	1999099	C
SNP	2503	5523	1	1999102	A
SNP	2504	5524	1	1999150	T
SNP	2505	5525	1	1999161	C
SNP	2506	5526	1	1999181	A
SNP	2507	5527	1	1999184	A
SNP	2508	5528	1	1999193	T
SNP	2509	5529	1	1999217	C
SNP	2510	5530	1	1999223	C
SNP	2511	5531	1	1999232	T
SNP	2512	5532	1	1999235	G
SNP	2513	5533	1	1999262	G
SNP	2514	5534	1	1999265	T
SNP	2515	5535	1	1999286	A
SNP	2516	5536	1	1999298	G
SNP	2517	5537	1	1999304	C
SNP	2518	5538	1	1999322	C
SNP	2519	5539	1	1999325	C
SNP	2520	5540	1	1999352	T
SNP	2521	5541	1	1999355	G
SNP	2522	5542	1	1999403	G
SNP	2523	5543	1	1999484	T
SNP	2524	5544	1	1999541	G
SNP	2525	5545	1	1999613	T
SNP	2526	5546	1	1999616	A
SNP	2527	5547	1	1999628	C
SNP	2528	5548	1	1999631	T
DEL	2529	5549	1	1999685	1
SNP	2530	5550	1	1999688	G
INS	2531	5551	1	1999692	T
SNP	2532	5552	1	1999699	A
SNP	2533	5553	1	1999706	T
SNP	2534	5554	1	1999763	G
SNP	2535	5555	1	1999804	A
SNP	2536	5556	1	1999808	A
SNP	2537	5557	1	1999814	A
SNP	2538	5558	1	1999832	G
SNP	2539	5559	1	1999841	T
SNP	2540	5560	1	1999863	G
SNP	2541	5561	1	1999880	A
SNP	2542	5562	1	1999886	A
SNP	2543	5563	1	2000256	C
DEL	2544	5736,5876	1	2001170	836
INS	2545	5564	1	2002860	T
SNP	2546	5565	1	2003325	G
SNP	2547	5566	1	2004365	C
SNP	2548	5567	1	2004757	C
SNP	2549	5568	1	2005013	A
SNP	2550	5569	1	2005664	A
SNP	2551	5570	1	2006221	T
SNP	2552	5571	1	2008723	A
SNP	2553	5572	1	2008912	T
SNP	2554	5573	1	2011355	C
SNP	2555	5574	1	2012529	T
SNP	2556	5575	1	2017989	A
SNP	2557	5576	1	2018326	A
SNP	2558	5577	1	2020982	C
SNP	2559	5578	1	2023005	A
SNP	2560	5579	1	2024185	G
SNP	2561	5580	1	2025356	C
SNP	2562	5581	1	2026915	G
SNP	2563	5582	1	2027018	C
SNP	2564	5583	1	2027458	A
SNP	2565	5584	1	2028379	G
SNP	2566	5585	1	2030855	G
SNP	2567	5586	1	2032814	G
SNP	2568	5587	1	2033648	G
SNP	2569	5588	1	2034525	G
SNP	2570	5589	1	2035067	C
SNP	2571	5590	1	2035522	G
SNP	2572	5591	1	2036360	A
SNP	2573	5592	1	2036660	A
SNP	2574	5593	1	2038269	C
SNP	2575	5595	1	2040872	G
SNP	2576	5596	1	2041125	C
INS	2577	5878	1	2042723	CGCCC	repeat_length=5	repeat_new_copies=3	repeat_ref_copies=2	repeat_seq=CGCCC
SNP	2578	5597	1	2043053	C
SNP	2579	5598	1	2043071	T
DEL	2580	5737,5879	1	2044378	1001
SNP	2581	5600	1	2047356	C
SNP	2582	5601	1	2047488	G
SNP	2583	5602	1	2047628	A
SNP	2584	5603	1	2047859	G
SNP	2585	5605	1	2048052	G
SNP	2586	5606	1	2048252	T
SNP	2587	5607	1	2048358	C
SNP	2588	5608	1	2050005	A
SNP	2589	5609	1	2055783	A
SNP	2590	5610	1	2056671	A
SNP	2591	5611	1	2056920	C
SNP	2592	5612	1	2057670	G
SNP	2593	5613	1	2058448	G
SNP	2594	5614	1	2058981	G
SNP	2595	5616	1	2065020	A
SNP	2596	5617	1	2065438	T
SNP	2597	5618	1	2065711	T
SNP	2598	5619	1	2066378	A
SNP	2599	5620	1	2067842	A
SNP	2600	5621	1	2068321	C
SNP	2601	5622	1	2071404	G
SNP	2602	5623	1	2071813	A
SNP	2603	5624	1	2071985	A
SNP	2604	5625	1	2073256	C
SNP	2605	5626	1	2073357	C
SNP	2606	5627	1	2073482	T
SNP	2607	5628	1	2074427	C
SNP	2608	5629	1	2074583	A
SNP	2609	5630	1	2075665	G
DEL	2610	5631	1	2076700	1	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=7	repeat_seq=C
SNP	2611	5632	1	2076802	C
SNP	2612	5633	1	2076991	G
SNP	2613	5634	1	2077370	A
SNP	2614	5635	1	2077734	C
SNP	2615	5636	1	2079198	T
SNP	2616	5637	1	2079749	A
SNP	2617	5638	1	2081520	G
SNP	2618	5639	1	2082122	G
SNP	2619	5642	1	2085860	A
SNP	2620	5643	1	2088582	C
SNP	2621	5644	1	2088723	C
SNP	2622	5645	1	2089379	C
SNP	2623	5646	1	2089943	C
SNP	2624	5647	1	2090100	A
SNP	2625	5648	1	2092144	G
SNP	2626	5649	1	2093586	G
SNP	2627	5650	1	2096004	A
SNP	2628	5651	1	2096181	C
SNP	2629	5652	1	2096376	G
SNP	2630	5653	1	2096646	C
SNP	2631	5654	1	2097991	T
SNP	2632	5655	1	2098766	T
SNP	2633	5656	1	2100666	G
SNP	2634	5657	1	2101860	G
SNP	2635	5658	1	2102863	A
SNP	2636	5660	1	2105983	A
SNP	2637	5661	1	2106085	C
INS	2638	5881	1	2108067	GGTCGGTT
SNP	2639	5665	1	2109698	A
SNP	2640	5666	1	2110010	C
SNP	2641	5667	1	2115392	C
SNP	2642	5668	1	2118701	T
SNP	2643	5669	1	2119104	C
RA	2644	.	1	1525	0	G	A	consensus_score=211.3	frequency=1	major_base=A	major_cov=44/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/30
RA	2645	.	1	4245	0	G	A	consensus_score=212.8	frequency=1	major_base=A	major_cov=34/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/41
RA	2646	.	1	4364	0	C	T	consensus_score=134.9	frequency=1	major_base=T	major_cov=26/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/23
RA	2647	.	1	7366	0	A	G	consensus_score=240.9	frequency=1	major_base=G	major_cov=36/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/44
RA	2648	.	1	7407	0	C	T	bias_e_value=1753330	bias_p_value=0.826965	consensus_score=213.8	fisher_strand_p_value=0.472973	frequency=1	ks_quality_p_value=0.99963	major_base=T	major_cov=39/34	major_frequency=9.865e-01	minor_base=G	minor_cov=0/1	new_cov=39/34	polymorphism_frequency=9.865e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/35
RA	2649	.	1	30947	0	G	A	consensus_score=236.1	frequency=1	major_base=A	major_cov=31/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/53
RA	2650	.	1	32817	0	C	T	consensus_score=227.3	frequency=1	major_base=T	major_cov=38/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/42
RA	2651	.	1	33338	0	C	T	bias_e_value=2120200	bias_p_value=1	consensus_score=240.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=44/40	major_frequency=9.882e-01	minor_base=C	minor_cov=1/0	new_cov=44/40	polymorphism_frequency=9.882e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=45/40
RA	2652	.	1	34062	0	A	G	consensus_score=253.9	frequency=1	major_base=G	major_cov=33/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/52
RA	2653	.	1	34174	0	T	G	bias_e_value=1753840	bias_p_value=0.827205	consensus_score=277.3	fisher_strand_p_value=0.473118	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=49/43	major_frequency=9.892e-01	minor_base=C	minor_cov=0/1	new_cov=49/43	polymorphism_frequency=9.892e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/44
RA	2654	.	1	37735	0	G	C	consensus_score=322.3	frequency=1	major_base=C	major_cov=57/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/53
RA	2655	.	1	38675	0	A	G	bias_e_value=2120190	bias_p_value=1	consensus_score=35.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=6/8	major_frequency=9.333e-01	minor_base=C	minor_cov=0/1	new_cov=6/8	polymorphism_frequency=9.333e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=0/0	total_cov=6/9
RA	2656	.	1	41167	0	G	A	consensus_score=214.7	frequency=1	major_base=A	major_cov=36/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/39
RA	2657	.	1	42120	0	G	A	consensus_score=155.5	frequency=1	major_base=A	major_cov=25/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/30
RA	2658	.	1	43552	0	T	G	bias_e_value=1.54282e-05	bias_p_value=7.27679e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=135.6	fisher_strand_p_value=2.42163e-13	frequency=3.605e-01	ks_quality_p_value=1	major_base=T	major_cov=13/42	major_frequency=6.395e-01	minor_base=G	minor_cov=31/0	new_cov=31/0	polymorphism_frequency=3.605e-01	polymorphism_score=12.3	prediction=polymorphism	ref_cov=13/42	total_cov=45/42
RA	2659	.	1	45809	0	A	G	consensus_score=272.7	frequency=1	major_base=G	major_cov=59/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/37
RA	2660	.	1	48252	0	G	T	consensus_score=276.9	frequency=1	major_base=T	major_cov=48/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/50
RA	2661	.	1	49004	0	A	G	consensus_score=173.6	frequency=1	major_base=G	major_cov=24/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/34
RA	2662	.	1	49917	0	A	G	consensus_score=261.7	frequency=1	major_base=G	major_cov=41/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/47
RA	2663	.	1	53426	0	C	T	consensus_score=303.5	frequency=1	major_base=T	major_cov=39/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/67
RA	2664	.	1	53548	0	T	G	consensus_score=208.5	frequency=1	major_base=G	major_cov=41/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/33
RA	2665	.	1	53712	0	A	G	consensus_score=327.1	frequency=1	major_base=G	major_cov=73/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=73/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=73/34
RA	2666	.	1	54904	0	A	C	consensus_score=211.5	frequency=1	major_base=C	major_cov=38/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/33
RA	2667	.	1	55079	0	C	T	consensus_score=261.1	frequency=1	major_base=T	major_cov=41/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/49
RA	2668	.	1	55611	0	C	T	consensus_score=235.7	frequency=1	major_base=T	major_cov=49/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/34
RA	2669	.	1	55869	0	A	C	consensus_score=255.6	frequency=1	major_base=C	major_cov=51/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/33
RA	2670	.	1	57693	0	C	A	consensus_score=296.6	frequency=1	major_base=A	major_cov=59/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/47
RA	2671	.	1	59976	0	C	A	consensus_score=131.7	frequency=1	major_base=A	major_cov=31/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/14
RA	2672	.	1	62127	0	A	C	consensus_score=280.5	frequency=1	major_base=C	major_cov=47/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/45
RA	2673	.	1	63918	0	A	C	consensus_score=271.1	frequency=1	major_base=C	major_cov=49/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/42
RA	2674	.	1	64134	0	C	T	consensus_score=305.0	frequency=1	major_base=T	major_cov=57/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/49
RA	2675	.	1	64315	0	T	G	bias_e_value=4.13481e-10	bias_p_value=1.9502e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=178.4	fisher_strand_p_value=4.77007e-18	frequency=3.458e-01	ks_quality_p_value=1	major_base=T	major_cov=13/57	major_frequency=6.542e-01	minor_base=G	minor_cov=37/0	new_cov=37/0	polymorphism_frequency=3.458e-01	polymorphism_score=22.3	prediction=polymorphism	ref_cov=13/57	total_cov=53/57
RA	2676	.	1	64539	0	A	C	bias_e_value=28.1368	bias_p_value=1.32709e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=153.4	fisher_strand_p_value=8.88662e-07	frequency=2.286e-01	ks_quality_p_value=1	major_base=A	major_cov=36/18	major_frequency=7.714e-01	minor_base=C	minor_cov=0/16	new_cov=0/16	polymorphism_frequency=2.286e-01	polymorphism_score=10.6	prediction=polymorphism	ref_cov=36/18	total_cov=36/34
RA	2677	.	1	64568	0	T	C	bias_e_value=0.00561311	bias_p_value=2.64745e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=75.5	fisher_strand_p_value=1.10658e-10	frequency=3.333e-01	ks_quality_p_value=1	major_base=T	major_cov=35/9	major_frequency=6.667e-01	minor_base=C	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=3.333e-01	polymorphism_score=21.9	prediction=polymorphism	ref_cov=35/9	total_cov=35/31
RA	2678	.	1	64574	0	A	C	bias_e_value=0.0661062	bias_p_value=3.11793e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=125.5	fisher_strand_p_value=1.46078e-09	frequency=2.985e-01	ks_quality_p_value=1	major_base=A	major_cov=36/11	major_frequency=7.015e-01	minor_base=C	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.985e-01	polymorphism_score=10.8	prediction=polymorphism	ref_cov=36/11	total_cov=36/32
RA	2679	.	1	64578	0	G	T	bias_e_value=1.806	bias_p_value=8.51809e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=109.6	fisher_strand_p_value=4.7698e-08	frequency=2.581e-01	ks_quality_p_value=1	major_base=G	major_cov=35/11	major_frequency=7.419e-01	minor_base=T	minor_cov=0/16	new_cov=0/16	polymorphism_frequency=2.581e-01	polymorphism_score=12.1	prediction=polymorphism	ref_cov=35/11	total_cov=35/27
RA	2680	.	1	64588	0	C	A	bias_e_value=0.01559	bias_p_value=7.35309e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=101.7	fisher_strand_p_value=3.21694e-10	frequency=3.167e-01	ks_quality_p_value=1	major_base=C	major_cov=34/7	major_frequency=6.833e-01	minor_base=A	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=3.167e-01	polymorphism_score=12.6	prediction=polymorphism	ref_cov=34/7	total_cov=34/26
RA	2681	.	1	64610	0	G	C	bias_e_value=0.100261	bias_p_value=4.72887e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=112.2	fisher_strand_p_value=2.26185e-09	frequency=2.836e-01	ks_quality_p_value=1	major_base=G	major_cov=37/11	major_frequency=7.164e-01	minor_base=C	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=2.836e-01	polymorphism_score=10.3	prediction=polymorphism	ref_cov=37/11	total_cov=37/30
RA	2682	.	1	68483	0	G	C	consensus_score=166.5	frequency=1	major_base=C	major_cov=24/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/34
RA	2683	.	1	71027	0	A	G	consensus_score=317.0	frequency=1	major_base=G	major_cov=57/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/53
RA	2684	.	1	71362	0	C	T	consensus_score=204.8	frequency=1	major_base=T	major_cov=36/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/36
RA	2685	.	1	71529	0	C	A	consensus_score=347.0	frequency=1	major_base=A	major_cov=64/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/55
RA	2686	.	1	72780	0	A	G	consensus_score=248.8	frequency=1	major_base=G	major_cov=56/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/26
RA	2687	.	1	73738	0	A	G	consensus_score=351.9	frequency=1	major_base=G	major_cov=59/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/62
RA	2688	.	1	74201	0	T	C	consensus_score=229.1	frequency=1	major_base=C	major_cov=46/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/35
RA	2689	.	1	74205	0	A	G	consensus_score=224.5	frequency=1	major_base=G	major_cov=45/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/33
RA	2690	.	1	74736	0	C	A	bias_e_value=8.51741e-08	bias_p_value=4.01728e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=177.9	fisher_strand_p_value=1.13442e-15	frequency=3.131e-01	ks_quality_p_value=1	major_base=C	major_cov=55/13	major_frequency=6.869e-01	minor_base=A	minor_cov=0/31	new_cov=0/31	polymorphism_frequency=3.131e-01	polymorphism_score=30.3	prediction=polymorphism	ref_cov=55/13	total_cov=55/44
RA	2691	.	1	74747	0	T	C	bias_e_value=4.21336e-05	bias_p_value=1.98725e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=174.6	fisher_strand_p_value=6.85039e-13	frequency=2.667e-01	ks_quality_p_value=1	major_base=T	major_cov=57/20	major_frequency=7.333e-01	minor_base=C	minor_cov=0/28	new_cov=0/28	polymorphism_frequency=2.667e-01	polymorphism_score=12.2	prediction=polymorphism	ref_cov=57/20	total_cov=57/48
RA	2692	.	1	74777	0	G	A	bias_e_value=1.21835e-10	bias_p_value=5.74641e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=170.2	fisher_strand_p_value=1.36377e-18	frequency=3.091e-01	ks_quality_p_value=1	major_base=G	major_cov=64/12	major_frequency=6.909e-01	minor_base=A	minor_cov=0/34	new_cov=0/34	polymorphism_frequency=3.091e-01	polymorphism_score=24.5	prediction=polymorphism	ref_cov=64/12	total_cov=64/46
RA	2693	.	1	74788	0	G	T	bias_e_value=3.43305e-06	bias_p_value=1.61921e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=226.4	fisher_strand_p_value=5.12372e-14	frequency=2.586e-01	ks_quality_p_value=1	major_base=G	major_cov=64/22	major_frequency=7.414e-01	minor_base=T	minor_cov=0/30	new_cov=0/30	polymorphism_frequency=2.586e-01	polymorphism_score=23.3	prediction=polymorphism	ref_cov=64/22	total_cov=64/52
RA	2694	.	1	74798	0	G	A	bias_e_value=1.06569e-06	bias_p_value=5.02638e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=174.7	fisher_strand_p_value=1.53198e-14	frequency=2.435e-01	ks_quality_p_value=1	major_base=G	major_cov=68/19	major_frequency=7.565e-01	minor_base=A	minor_cov=0/28	new_cov=0/28	polymorphism_frequency=2.435e-01	polymorphism_score=17.8	prediction=polymorphism	ref_cov=68/19	total_cov=68/52
RA	2695	.	1	74801	0	A	C	bias_e_value=3.80143e-07	bias_p_value=1.79296e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=228.9	fisher_strand_p_value=5.29329e-15	frequency=2.672e-01	ks_quality_p_value=1	major_base=A	major_cov=65/20	major_frequency=7.328e-01	minor_base=C	minor_cov=0/31	new_cov=0/31	polymorphism_frequency=2.672e-01	polymorphism_score=17.3	prediction=polymorphism	ref_cov=65/20	total_cov=65/52
RA	2696	.	1	77684	0	G	A	bias_e_value=2120190	bias_p_value=1	consensus_score=339.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999411	major_base=A	major_cov=58/58	major_frequency=9.915e-01	minor_base=G	minor_cov=0/1	new_cov=58/58	polymorphism_frequency=9.915e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=58/59
RA	2697	.	1	78464	0	A	G	consensus_score=317.1	frequency=1	major_base=G	major_cov=52/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/56
RA	2698	.	1	79130	0	C	T	consensus_score=296.2	frequency=1	major_base=T	major_cov=68/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=68/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/36
RA	2699	.	1	80077	0	C	G	consensus_score=324.5	frequency=1	major_base=G	major_cov=56/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/62
RA	2700	.	1	80581	0	C	T	consensus_score=387.2	frequency=1	major_base=T	major_cov=67/70	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=67/70	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/70
RA	2701	.	1	82249	0	A	G	bias_e_value=1296300	bias_p_value=0.611407	consensus_score=437.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.260868	major_base=G	major_cov=77/75	major_frequency=9.935e-01	minor_base=A	minor_cov=1/0	new_cov=77/75	polymorphism_frequency=9.935e-01	polymorphism_score=-5.7	prediction=consensus	ref_cov=1/0	total_cov=78/75
RA	2702	.	1	86562	0	T	G	consensus_score=143.7	frequency=1	major_base=G	major_cov=22/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/28
RA	2703	.	1	86942	0	C	T	consensus_score=357.8	frequency=1	major_base=T	major_cov=63/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/63
RA	2704	.	1	86997	0	G	T	consensus_score=336.7	frequency=1	major_base=T	major_cov=50/68	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/68	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/68
RA	2705	.	1	87566	0	C	T	consensus_score=314.2	frequency=1	major_base=T	major_cov=61/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/48
RA	2706	.	1	89008	0	A	C	consensus_score=297.5	frequency=1	major_base=C	major_cov=55/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/43
RA	2707	.	1	89106	0	G	A	consensus_score=221.9	frequency=1	major_base=A	major_cov=47/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/36
RA	2708	.	1	89342	0	C	A	consensus_score=308.6	frequency=1	major_base=A	major_cov=47/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/62
RA	2709	.	1	89348	0	C	G	consensus_score=317.2	frequency=1	major_base=G	major_cov=47/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/61
RA	2710	.	1	89521	0	C	T	consensus_score=288.7	frequency=1	major_base=T	major_cov=58/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/40
RA	2711	.	1	89601	0	A	G	consensus_score=245.2	frequency=1	major_base=G	major_cov=50/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/30
RA	2712	.	1	89695	0	A	G	bias_e_value=569899	bias_p_value=0.268796	consensus_reject=FREQUENCY_CUTOFF	consensus_score=25.1	fisher_strand_p_value=0.116918	frequency=4.286e-01	ks_quality_p_value=0.639909	major_base=A	major_cov=32/16	major_frequency=5.714e-01	minor_base=G	minor_cov=17/19	new_cov=17/19	polymorphism_frequency=4.286e-01	polymorphism_score=80.8	prediction=polymorphism	ref_cov=32/16	total_cov=49/35
RA	2713	.	1	89729	0	C	G	bias_e_value=2063360	bias_p_value=0.973196	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=2.5	fisher_strand_p_value=1	frequency=4.898e-01	ks_quality_p_value=0.777583	major_base=C	major_cov=24/26	major_frequency=5.102e-01	minor_base=G	minor_cov=24/24	new_cov=24/24	polymorphism_frequency=4.898e-01	polymorphism_score=151.7	prediction=polymorphism	ref_cov=24/26	total_cov=48/50
RA	2714	.	1	89761	0	A	G	bias_e_value=1760260	bias_p_value=0.830237	consensus_reject=FREQUENCY_CUTOFF	consensus_score=17.5	fisher_strand_p_value=0.855332	frequency=5.294e-01	ks_quality_p_value=0.557905	major_base=G	major_cov=29/34	major_frequency=5.294e-01	minor_base=A	minor_cov=27/29	new_cov=29/34	polymorphism_frequency=5.294e-01	polymorphism_score=127.0	prediction=polymorphism	ref_cov=27/29	total_cov=56/63
RA	2715	.	1	89824	0	T	G	bias_e_value=1523940	bias_p_value=0.718774	consensus_reject=FREQUENCY_CUTOFF	consensus_score=13.2	fisher_strand_p_value=0.751856	frequency=5.125e-01	ks_quality_p_value=0.46721	major_base=G	major_cov=43/39	major_frequency=5.125e-01	minor_base=T	minor_cov=38/40	new_cov=43/39	polymorphism_frequency=5.125e-01	polymorphism_score=224.6	prediction=polymorphism	ref_cov=38/40	total_cov=81/79
RA	2716	.	1	89866	0	G	C	bias_e_value=1494930	bias_p_value=0.705089	consensus_reject=FREQUENCY_CUTOFF	consensus_score=33.3	fisher_strand_p_value=0.880683	frequency=4.749e-01	ks_quality_p_value=0.384272	major_base=G	major_cov=50/44	major_frequency=5.251e-01	minor_base=C	minor_cov=47/38	new_cov=47/38	polymorphism_frequency=4.749e-01	polymorphism_score=268.1	prediction=polymorphism	ref_cov=50/44	total_cov=97/82
RA	2717	.	1	89887	0	G	A	bias_e_value=0.0397808	bias_p_value=1.87628e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=20.7	fisher_strand_p_value=1	frequency=4.789e-01	ks_quality_p_value=8.57656e-10	major_base=G	major_cov=56/43	major_frequency=5.211e-01	minor_base=A	minor_cov=52/39	new_cov=52/39	polymorphism_frequency=4.789e-01	polymorphism_score=203.2	prediction=polymorphism	ref_cov=56/43	total_cov=108/82
RA	2718	.	1	89908	0	A	G	bias_e_value=2.09991e-11	bias_p_value=9.90433e-18	consensus_reject=FREQUENCY_CUTOFF	consensus_score=10.9	fisher_strand_p_value=0.472933	frequency=5.102e-01	ks_quality_p_value=4.76652e-19	major_base=G	major_cov=58/42	major_frequency=5.102e-01	minor_base=A	minor_cov=50/46	new_cov=58/42	polymorphism_frequency=5.102e-01	polymorphism_score=212.5	prediction=polymorphism	ref_cov=50/46	total_cov=108/88
RA	2719	.	1	89934	0	G	C	consensus_score=653.2	frequency=1	major_base=C	major_cov=115/99	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=115/99	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=115/99
RA	2720	.	1	89980	0	G	T	bias_e_value=39767.9	bias_p_value=0.0187567	consensus_reject=FREQUENCY_CUTOFF	consensus_score=145.0	fisher_strand_p_value=0.00417842	frequency=4.049e-01	ks_quality_p_value=0.649721	major_base=G	major_cov=57/65	major_frequency=5.951e-01	minor_base=T	minor_cov=56/27	new_cov=56/27	polymorphism_frequency=4.049e-01	polymorphism_score=227.9	prediction=polymorphism	ref_cov=57/65	total_cov=113/92
RA	2721	.	1	89982	0	A	C	bias_e_value=26834.4	bias_p_value=0.0126566	consensus_reject=FREQUENCY_CUTOFF	consensus_score=124.0	fisher_strand_p_value=0.00177097	frequency=4.058e-01	ks_quality_p_value=0.970156	major_base=A	major_cov=56/67	major_frequency=5.942e-01	minor_base=C	minor_cov=57/27	new_cov=57/27	polymorphism_frequency=4.058e-01	polymorphism_score=239.7	prediction=polymorphism	ref_cov=56/67	total_cov=113/94
RA	2722	.	1	89989	0	G	A	bias_e_value=87909.8	bias_p_value=0.0414631	consensus_reject=FREQUENCY_CUTOFF	consensus_score=81.9	fisher_strand_p_value=0.0180675	frequency=4.387e-01	ks_quality_p_value=0.384429	major_base=G	major_cov=55/64	major_frequency=5.613e-01	minor_base=A	minor_cov=59/34	new_cov=59/34	polymorphism_frequency=4.387e-01	polymorphism_score=204.7	prediction=polymorphism	ref_cov=55/64	total_cov=114/98
RA	2723	.	1	90002	0	T	C	consensus_score=614.9	frequency=1	major_base=C	major_cov=112/102	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=112/102	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=112/102
RA	2724	.	1	90016	0	G	A	bias_e_value=849457	bias_p_value=0.40065	consensus_reject=FREQUENCY_CUTOFF	consensus_score=115.1	fisher_strand_p_value=0.132671	frequency=4.279e-01	ks_quality_p_value=1	major_base=G	major_cov=58/65	major_frequency=5.721e-01	minor_base=A	minor_cov=53/39	new_cov=53/39	polymorphism_frequency=4.279e-01	polymorphism_score=194.3	prediction=polymorphism	ref_cov=58/65	total_cov=111/104
RA	2725	.	1	90028	0	C	T	bias_e_value=1170480	bias_p_value=0.552063	consensus_reject=FREQUENCY_CUTOFF	consensus_score=121.3	fisher_strand_p_value=0.261887	frequency=4.135e-01	ks_quality_p_value=0.837424	major_base=C	major_cov=58/64	major_frequency=5.865e-01	minor_base=T	minor_cov=48/38	new_cov=48/38	polymorphism_frequency=4.135e-01	polymorphism_score=186.6	prediction=polymorphism	ref_cov=58/64	total_cov=106/102
RA	2726	.	1	90031	0	C	G	bias_e_value=1118940	bias_p_value=0.527754	consensus_reject=FREQUENCY_CUTOFF	consensus_score=125.1	fisher_strand_p_value=0.206538	frequency=4.175e-01	ks_quality_p_value=0.986095	major_base=C	major_cov=56/64	major_frequency=5.825e-01	minor_base=G	minor_cov=48/38	new_cov=48/38	polymorphism_frequency=4.175e-01	polymorphism_score=268.1	prediction=polymorphism	ref_cov=56/64	total_cov=104/102
RA	2727	.	1	90034	0	A	C	bias_e_value=1064120	bias_p_value=0.501897	consensus_reject=FREQUENCY_CUTOFF	consensus_score=82.5	fisher_strand_p_value=0.203467	frequency=4.257e-01	ks_quality_p_value=0.923071	major_base=A	major_cov=54/62	major_frequency=5.743e-01	minor_base=C	minor_cov=48/38	new_cov=48/38	polymorphism_frequency=4.257e-01	polymorphism_score=252.1	prediction=polymorphism	ref_cov=54/62	total_cov=102/100
RA	2728	.	1	90036	0	C	G	bias_e_value=1098210	bias_p_value=0.517978	consensus_reject=FREQUENCY_CUTOFF	consensus_score=103.4	fisher_strand_p_value=0.203467	frequency=4.257e-01	ks_quality_p_value=0.971065	major_base=C	major_cov=54/62	major_frequency=5.743e-01	minor_base=G	minor_cov=48/38	new_cov=48/38	polymorphism_frequency=4.257e-01	polymorphism_score=274.1	prediction=polymorphism	ref_cov=54/62	total_cov=102/100
RA	2729	.	1	90048	0	G	A	bias_e_value=751928	bias_p_value=0.35465	consensus_reject=FREQUENCY_CUTOFF	consensus_score=77.4	fisher_strand_p_value=0.121018	frequency=4.478e-01	ks_quality_p_value=0.915891	major_base=G	major_cov=48/63	major_frequency=5.522e-01	minor_base=A	minor_cov=49/41	new_cov=49/41	polymorphism_frequency=4.478e-01	polymorphism_score=196.1	prediction=polymorphism	ref_cov=48/63	total_cov=97/104
RA	2730	.	1	90058	0	T	C	bias_e_value=237617	bias_p_value=0.112073	consensus_reject=FREQUENCY_CUTOFF	consensus_score=70.2	fisher_strand_p_value=0.0354511	frequency=4.444e-01	ks_quality_p_value=0.666123	major_base=T	major_cov=47/68	major_frequency=5.556e-01	minor_base=C	minor_cov=52/40	new_cov=52/40	polymorphism_frequency=4.444e-01	polymorphism_score=207.6	prediction=polymorphism	ref_cov=47/68	total_cov=99/108
RA	2731	.	1	90071	0	A	G	bias_e_value=32078.5	bias_p_value=0.01513	consensus_reject=FREQUENCY_CUTOFF	consensus_score=80.0	fisher_strand_p_value=0.0911909	frequency=4.251e-01	ks_quality_p_value=0.0231741	major_base=A	major_cov=50/69	major_frequency=5.749e-01	minor_base=G	minor_cov=48/40	new_cov=48/40	polymorphism_frequency=4.251e-01	polymorphism_score=195.7	prediction=polymorphism	ref_cov=50/69	total_cov=98/109
RA	2732	.	1	90072	0	C	T	bias_e_value=583342	bias_p_value=0.275136	consensus_reject=FREQUENCY_CUTOFF	consensus_score=81.0	fisher_strand_p_value=0.090675	frequency=4.314e-01	ks_quality_p_value=0.852251	major_base=C	major_cov=49/67	major_frequency=5.686e-01	minor_base=T	minor_cov=48/40	new_cov=48/40	polymorphism_frequency=4.314e-01	polymorphism_score=191.8	prediction=polymorphism	ref_cov=49/67	total_cov=97/107
RA	2733	.	1	90085	0	T	A	bias_e_value=1276430	bias_p_value=0.602032	consensus_reject=FREQUENCY_CUTOFF	consensus_score=110.3	fisher_strand_p_value=0.259623	frequency=4.369e-01	ks_quality_p_value=0.978187	major_base=T	major_cov=49/67	major_frequency=5.631e-01	minor_base=A	minor_cov=46/44	new_cov=46/44	polymorphism_frequency=4.369e-01	polymorphism_score=293.6	prediction=polymorphism	ref_cov=49/67	total_cov=95/111
RA	2734	.	1	90088	0	C	T	bias_e_value=4367.77	bias_p_value=0.00206008	consensus_reject=FREQUENCY_CUTOFF	consensus_score=65.1	fisher_strand_p_value=0.264237	frequency=4.417e-01	ks_quality_p_value=0.000826866	major_base=C	major_cov=49/66	major_frequency=5.583e-01	minor_base=T	minor_cov=46/45	new_cov=46/45	polymorphism_frequency=4.417e-01	polymorphism_score=200.0	prediction=polymorphism	ref_cov=49/66	total_cov=95/111
RA	2735	.	1	90095	0	T	C	bias_e_value=1278430	bias_p_value=0.60298	consensus_reject=FREQUENCY_CUTOFF	consensus_score=104.6	fisher_strand_p_value=0.254652	frequency=4.146e-01	ks_quality_p_value=1	major_base=T	major_cov=49/71	major_frequency=5.854e-01	minor_base=C	minor_cov=42/43	new_cov=42/43	polymorphism_frequency=4.146e-01	polymorphism_score=177.5	prediction=polymorphism	ref_cov=49/71	total_cov=91/114
RA	2736	.	1	90097	0	A	G	bias_e_value=1277350	bias_p_value=0.602466	consensus_reject=FREQUENCY_CUTOFF	consensus_score=111.2	fisher_strand_p_value=0.254277	frequency=4.126e-01	ks_quality_p_value=1	major_base=A	major_cov=49/72	major_frequency=5.874e-01	minor_base=G	minor_cov=42/43	new_cov=42/43	polymorphism_frequency=4.126e-01	polymorphism_score=185.7	prediction=polymorphism	ref_cov=49/72	total_cov=91/115
RA	2737	.	1	90100	0	C	T	bias_e_value=1108620	bias_p_value=0.522887	consensus_reject=FREQUENCY_CUTOFF	consensus_score=130.8	fisher_strand_p_value=0.201201	frequency=4.087e-01	ks_quality_p_value=0.99712	major_base=C	major_cov=49/74	major_frequency=5.913e-01	minor_base=T	minor_cov=42/43	new_cov=42/43	polymorphism_frequency=4.087e-01	polymorphism_score=184.5	prediction=polymorphism	ref_cov=49/74	total_cov=91/117
RA	2738	.	1	90114	0	T	C	consensus_score=613.0	frequency=1	major_base=C	major_cov=86/120	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=86/120	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=86/120
RA	2739	.	1	90115	0	A	G	bias_e_value=779473	bias_p_value=0.367642	consensus_reject=FREQUENCY_CUTOFF	consensus_score=91.2	fisher_strand_p_value=0.116818	frequency=4.320e-01	ks_quality_p_value=1	major_base=A	major_cov=43/74	major_frequency=5.680e-01	minor_base=G	minor_cov=43/46	new_cov=43/46	polymorphism_frequency=4.320e-01	polymorphism_score=190.1	prediction=polymorphism	ref_cov=43/74	total_cov=86/120
RA	2740	.	1	90127	0	G	A	bias_e_value=615324	bias_p_value=0.29022	consensus_reject=FREQUENCY_CUTOFF	consensus_score=75.8	fisher_strand_p_value=0.0835448	frequency=4.307e-01	ks_quality_p_value=0.996561	major_base=G	major_cov=40/75	major_frequency=5.693e-01	minor_base=A	minor_cov=41/46	new_cov=41/46	polymorphism_frequency=4.307e-01	polymorphism_score=197.5	prediction=polymorphism	ref_cov=40/75	total_cov=81/121
RA	2741	.	1	90136	0	A	G	bias_e_value=653708	bias_p_value=0.308324	consensus_reject=FREQUENCY_CUTOFF	consensus_score=69.8	fisher_strand_p_value=0.0932627	frequency=4.265e-01	ks_quality_p_value=0.972193	major_base=A	major_cov=45/76	major_frequency=5.735e-01	minor_base=G	minor_cov=44/46	new_cov=44/46	polymorphism_frequency=4.265e-01	polymorphism_score=209.6	prediction=polymorphism	ref_cov=45/76	total_cov=89/122
RA	2742	.	1	90175	0	G	A	bias_e_value=1208950	bias_p_value=0.570205	consensus_reject=FREQUENCY_CUTOFF	consensus_score=40.8	fisher_strand_p_value=0.231486	frequency=5.489e-01	ks_quality_p_value=1	major_base=A	major_cov=39/62	major_frequency=5.489e-01	minor_base=G	minor_cov=40/43	new_cov=39/62	polymorphism_frequency=5.489e-01	polymorphism_score=188.8	prediction=polymorphism	ref_cov=40/43	total_cov=79/105
RA	2743	.	1	90246	0	A	C	bias_e_value=2047880	bias_p_value=0.965892	consensus_reject=FREQUENCY_CUTOFF	consensus_score=12.4	fisher_strand_p_value=0.750454	frequency=4.841e-01	ks_quality_p_value=1	major_base=A	major_cov=38/43	major_frequency=5.159e-01	minor_base=C	minor_cov=38/38	new_cov=38/38	polymorphism_frequency=4.841e-01	polymorphism_score=215.6	prediction=polymorphism	ref_cov=38/43	total_cov=76/81
RA	2744	.	1	90329	0	G	C	bias_e_value=1518690	bias_p_value=0.716295	consensus_reject=FREQUENCY_CUTOFF	consensus_score=58.2	fisher_strand_p_value=0.352557	frequency=4.675e-01	ks_quality_p_value=0.989666	major_base=G	major_cov=53/37	major_frequency=5.325e-01	minor_base=C	minor_cov=40/39	new_cov=40/39	polymorphism_frequency=4.675e-01	polymorphism_score=239.3	prediction=polymorphism	ref_cov=53/37	total_cov=93/76
RA	2745	.	1	90397	0	C	A	bias_e_value=95628.6	bias_p_value=0.0451037	consensus_reject=FREQUENCY_CUTOFF	consensus_score=167.3	fisher_strand_p_value=0.645346	frequency=3.661e-01	ks_quality_p_value=0.0119097	major_base=C	major_cov=61/55	major_frequency=6.339e-01	minor_base=A	minor_cov=38/29	new_cov=38/29	polymorphism_frequency=3.661e-01	polymorphism_score=184.8	prediction=polymorphism	ref_cov=61/55	total_cov=99/84
RA	2746	.	1	90398	0	C	T	bias_e_value=177089	bias_p_value=0.0835249	consensus_reject=FREQUENCY_CUTOFF	consensus_score=147.8	fisher_strand_p_value=0.645346	frequency=3.661e-01	ks_quality_p_value=0.0253046	major_base=C	major_cov=61/55	major_frequency=6.339e-01	minor_base=T	minor_cov=38/29	new_cov=38/29	polymorphism_frequency=3.661e-01	polymorphism_score=141.1	prediction=polymorphism	ref_cov=61/55	total_cov=99/84
RA	2747	.	1	90411	0	T	C	bias_e_value=59497.9	bias_p_value=0.0280625	consensus_reject=FREQUENCY_CUTOFF	consensus_score=158.6	fisher_strand_p_value=0.636535	frequency=3.483e-01	ks_quality_p_value=0.00685093	major_base=T	major_cov=60/56	major_frequency=6.517e-01	minor_base=C	minor_cov=35/27	new_cov=35/27	polymorphism_frequency=3.483e-01	polymorphism_score=129.3	prediction=polymorphism	ref_cov=60/56	total_cov=95/83
RA	2748	.	1	90460	0	T	G	bias_e_value=793297	bias_p_value=0.374162	consensus_reject=FREQUENCY_CUTOFF	consensus_score=212.0	fisher_strand_p_value=0.12053	frequency=3.333e-01	ks_quality_p_value=0.99455	major_base=T	major_cov=53/69	major_frequency=6.667e-01	minor_base=G	minor_cov=34/27	new_cov=34/27	polymorphism_frequency=3.333e-01	polymorphism_score=161.7	prediction=polymorphism	ref_cov=53/69	total_cov=87/96
RA	2749	.	1	90488	0	G	A	bias_e_value=333954	bias_p_value=0.157511	consensus_reject=FREQUENCY_CUTOFF	consensus_score=202.4	fisher_strand_p_value=0.036559	frequency=3.149e-01	ks_quality_p_value=0.999873	major_base=G	major_cov=50/74	major_frequency=6.851e-01	minor_base=A	minor_cov=33/24	new_cov=33/24	polymorphism_frequency=3.149e-01	polymorphism_score=110.1	prediction=polymorphism	ref_cov=50/74	total_cov=83/98
RA	2750	.	1	90490	0	A	G	bias_e_value=333987	bias_p_value=0.157526	consensus_reject=FREQUENCY_CUTOFF	consensus_score=199.0	fisher_strand_p_value=0.036559	frequency=3.149e-01	ks_quality_p_value=1	major_base=A	major_cov=50/74	major_frequency=6.851e-01	minor_base=G	minor_cov=33/24	new_cov=33/24	polymorphism_frequency=3.149e-01	polymorphism_score=116.3	prediction=polymorphism	ref_cov=50/74	total_cov=83/98
RA	2751	.	1	90508	0	T	C	bias_e_value=1201730	bias_p_value=0.566803	consensus_reject=FREQUENCY_CUTOFF	consensus_score=244.8	fisher_strand_p_value=0.345941	frequency=2.278e-01	ks_quality_p_value=0.662452	major_base=T	major_cov=50/72	major_frequency=7.722e-01	minor_base=C	minor_cov=18/18	new_cov=18/18	polymorphism_frequency=2.278e-01	polymorphism_score=63.6	prediction=polymorphism	ref_cov=50/72	total_cov=68/90
RA	2752	.	1	90511	0	A	G	bias_e_value=280203	bias_p_value=0.132159	consensus_reject=FREQUENCY_CUTOFF	consensus_score=239.9	fisher_strand_p_value=0.343915	frequency=2.308e-01	ks_quality_p_value=0.0847223	major_base=A	major_cov=49/71	major_frequency=7.692e-01	minor_base=G	minor_cov=18/18	new_cov=18/18	polymorphism_frequency=2.308e-01	polymorphism_score=66.0	prediction=polymorphism	ref_cov=49/71	total_cov=67/89
RA	2753	.	1	90519	0	G	A	bias_e_value=549497	bias_p_value=0.259173	consensus_reject=FREQUENCY_CUTOFF	consensus_score=241.6	fisher_strand_p_value=0.250853	frequency=2.387e-01	ks_quality_p_value=0.283596	major_base=G	major_cov=44/74	major_frequency=7.613e-01	minor_base=A	minor_cov=18/19	new_cov=18/19	polymorphism_frequency=2.387e-01	polymorphism_score=68.0	prediction=polymorphism	ref_cov=44/74	total_cov=62/93
RA	2754	.	1	90526	0	T	G	bias_e_value=1259930	bias_p_value=0.594254	consensus_reject=FREQUENCY_CUTOFF	consensus_score=300.2	fisher_strand_p_value=0.249323	frequency=2.372e-01	ks_quality_p_value=0.996022	major_base=T	major_cov=44/75	major_frequency=7.628e-01	minor_base=G	minor_cov=18/19	new_cov=18/19	polymorphism_frequency=2.372e-01	polymorphism_score=89.9	prediction=polymorphism	ref_cov=44/75	total_cov=62/94
RA	2755	.	1	90538	0	G	T	bias_e_value=715228	bias_p_value=0.33734	consensus_reject=FREQUENCY_CUTOFF	consensus_score=273.8	fisher_strand_p_value=0.178059	frequency=2.387e-01	ks_quality_p_value=0.579001	major_base=G	major_cov=42/76	major_frequency=7.613e-01	minor_base=T	minor_cov=18/19	new_cov=18/19	polymorphism_frequency=2.387e-01	polymorphism_score=91.3	prediction=polymorphism	ref_cov=42/76	total_cov=60/95
RA	2756	.	1	90544	0	T	G	bias_e_value=456105	bias_p_value=0.215124	consensus_reject=FREQUENCY_CUTOFF	consensus_score=282.4	fisher_strand_p_value=0.0561549	frequency=2.468e-01	ks_quality_p_value=0.983127	major_base=T	major_cov=40/76	major_frequency=7.532e-01	minor_base=G	minor_cov=20/18	new_cov=20/18	polymorphism_frequency=2.468e-01	polymorphism_score=93.1	prediction=polymorphism	ref_cov=40/76	total_cov=60/94
RA	2757	.	1	90550	0	A	G	bias_e_value=460451	bias_p_value=0.217174	consensus_reject=FREQUENCY_CUTOFF	consensus_score=218.0	fisher_strand_p_value=0.0561549	frequency=2.468e-01	ks_quality_p_value=0.995755	major_base=A	major_cov=40/76	major_frequency=7.532e-01	minor_base=G	minor_cov=20/18	new_cov=20/18	polymorphism_frequency=2.468e-01	polymorphism_score=73.4	prediction=polymorphism	ref_cov=40/76	total_cov=60/94
RA	2758	.	1	90562	0	C	G	bias_e_value=889287	bias_p_value=0.419437	consensus_reject=FREQUENCY_CUTOFF	consensus_score=289.1	fisher_strand_p_value=0.142135	frequency=2.254e-01	ks_quality_p_value=1	major_base=C	major_cov=35/75	major_frequency=7.746e-01	minor_base=G	minor_cov=15/17	new_cov=15/17	polymorphism_frequency=2.254e-01	polymorphism_score=80.3	prediction=polymorphism	ref_cov=35/75	total_cov=50/92
RA	2759	.	1	90566	0	G	T	bias_e_value=867291	bias_p_value=0.409062	consensus_reject=FREQUENCY_CUTOFF	consensus_score=283.3	fisher_strand_p_value=0.141687	frequency=2.192e-01	ks_quality_p_value=0.965985	major_base=G	major_cov=36/78	major_frequency=7.808e-01	minor_base=T	minor_cov=15/17	new_cov=15/17	polymorphism_frequency=2.192e-01	polymorphism_score=77.8	prediction=polymorphism	ref_cov=36/78	total_cov=51/95
RA	2760	.	1	90641	0	A	G	bias_e_value=1736110	bias_p_value=0.818844	consensus_score=354.5	fisher_strand_p_value=0.462185	frequency=1	ks_quality_p_value=0.999858	major_base=G	major_cov=54/64	major_frequency=9.916e-01	minor_base=A	minor_cov=1/0	new_cov=54/64	polymorphism_frequency=9.916e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=55/64
RA	2761	.	1	90754	0	G	T	bias_e_value=1970990	bias_p_value=0.929625	consensus_reject=FREQUENCY_CUTOFF	consensus_score=385.2	fisher_strand_p_value=0.721894	frequency=7.676e-01	ks_quality_p_value=0.899177	major_base=T	major_cov=54/88	major_frequency=7.676e-01	minor_base=A	minor_cov=18/25	new_cov=54/88	polymorphism_frequency=7.676e-01	polymorphism_score=130.1	prediction=polymorphism	ref_cov=0/0	total_cov=72/113
RA	2762	.	1	90770	0	C	T	bias_e_value=1788630	bias_p_value=0.843616	consensus_reject=FREQUENCY_CUTOFF	consensus_score=278.1	fisher_strand_p_value=0.497305	frequency=2.474e-01	ks_quality_p_value=0.996892	major_base=C	major_cov=55/91	major_frequency=7.526e-01	minor_base=T	minor_cov=21/27	new_cov=21/27	polymorphism_frequency=2.474e-01	polymorphism_score=95.2	prediction=polymorphism	ref_cov=55/91	total_cov=76/118
RA	2763	.	1	90771	0	T	C	bias_e_value=1739700	bias_p_value=0.820536	consensus_reject=FREQUENCY_CUTOFF	consensus_score=293.8	fisher_strand_p_value=0.497305	frequency=2.474e-01	ks_quality_p_value=0.933668	major_base=T	major_cov=55/91	major_frequency=7.526e-01	minor_base=C	minor_cov=21/27	new_cov=21/27	polymorphism_frequency=2.474e-01	polymorphism_score=91.4	prediction=polymorphism	ref_cov=55/91	total_cov=76/118
RA	2764	.	1	90781	0	A	T	bias_e_value=786011	bias_p_value=0.370726	consensus_reject=FREQUENCY_CUTOFF	consensus_score=415.1	fisher_strand_p_value=0.600528	frequency=2.245e-01	ks_quality_p_value=0.196924	major_base=A	major_cov=58/94	major_frequency=7.755e-01	minor_base=T	minor_cov=19/25	new_cov=19/25	polymorphism_frequency=2.245e-01	polymorphism_score=132.2	prediction=polymorphism	ref_cov=58/94	total_cov=77/119
RA	2765	.	1	90784	0	T	C	bias_e_value=1921650	bias_p_value=0.906355	consensus_reject=FREQUENCY_CUTOFF	consensus_score=307.0	fisher_strand_p_value=0.599725	frequency=2.234e-01	ks_quality_p_value=1	major_base=T	major_cov=58/95	major_frequency=7.766e-01	minor_base=C	minor_cov=19/25	new_cov=19/25	polymorphism_frequency=2.234e-01	polymorphism_score=78.4	prediction=polymorphism	ref_cov=58/95	total_cov=77/120
RA	2766	.	1	90787	0	T	C	bias_e_value=1890630	bias_p_value=0.891726	consensus_reject=FREQUENCY_CUTOFF	consensus_score=306.1	fisher_strand_p_value=0.599725	frequency=2.234e-01	ks_quality_p_value=0.954361	major_base=T	major_cov=58/95	major_frequency=7.766e-01	minor_base=C	minor_cov=19/25	new_cov=19/25	polymorphism_frequency=2.234e-01	polymorphism_score=81.3	prediction=polymorphism	ref_cov=58/95	total_cov=77/120
RA	2767	.	1	90877	0	G	A	bias_e_value=3.08641e-20	bias_p_value=1.45572e-26	consensus_reject=FREQUENCY_CUTOFF	consensus_score=172.9	fisher_strand_p_value=0.390289	frequency=3.600e-01	ks_quality_p_value=5.76833e-28	major_base=G	major_cov=51/93	major_frequency=6.400e-01	minor_base=A	minor_cov=34/47	new_cov=34/47	polymorphism_frequency=3.600e-01	polymorphism_score=168.4	prediction=polymorphism	ref_cov=51/93	total_cov=85/140
RA	2768	.	1	90904	0	A	G	bias_e_value=1613710	bias_p_value=0.761112	consensus_reject=FREQUENCY_CUTOFF	consensus_score=134.2	fisher_strand_p_value=0.394149	frequency=3.871e-01	ks_quality_p_value=1	major_base=A	major_cov=50/83	major_frequency=6.129e-01	minor_base=G	minor_cov=37/47	new_cov=37/47	polymorphism_frequency=3.871e-01	polymorphism_score=184.2	prediction=polymorphism	ref_cov=50/83	total_cov=87/130
RA	2769	.	1	90907	0	G	A	bias_e_value=739958	bias_p_value=0.349005	consensus_reject=FREQUENCY_CUTOFF	consensus_score=140.9	fisher_strand_p_value=0.48006	frequency=3.953e-01	ks_quality_p_value=0.225569	major_base=G	major_cov=50/80	major_frequency=6.047e-01	minor_base=A	minor_cov=37/48	new_cov=37/48	polymorphism_frequency=3.953e-01	polymorphism_score=191.3	prediction=polymorphism	ref_cov=50/80	total_cov=87/128
RA	2770	.	1	90939	0	T	A	bias_e_value=225564	bias_p_value=0.106388	consensus_reject=FREQUENCY_CUTOFF	consensus_score=118.7	fisher_strand_p_value=0.479941	frequency=4.300e-01	ks_quality_p_value=0.0460688	major_base=T	major_cov=47/71	major_frequency=5.700e-01	minor_base=A	minor_cov=40/49	new_cov=40/49	polymorphism_frequency=4.300e-01	polymorphism_score=287.8	prediction=polymorphism	ref_cov=47/71	total_cov=87/120
RA	2771	.	1	90949	0	A	G	bias_e_value=875029	bias_p_value=0.412712	consensus_reject=FREQUENCY_CUTOFF	consensus_score=43.8	fisher_strand_p_value=0.570718	frequency=4.390e-01	ks_quality_p_value=0.243043	major_base=A	major_cov=48/67	major_frequency=5.610e-01	minor_base=G	minor_cov=42/48	new_cov=42/48	polymorphism_frequency=4.390e-01	polymorphism_score=194.6	prediction=polymorphism	ref_cov=48/67	total_cov=90/118
RA	2772	.	1	90951	0	T	C	bias_e_value=1890540	bias_p_value=0.891681	consensus_reject=FREQUENCY_CUTOFF	consensus_score=60.6	fisher_strand_p_value=0.572274	frequency=4.396e-01	ks_quality_p_value=1	major_base=T	major_cov=48/68	major_frequency=5.604e-01	minor_base=C	minor_cov=42/49	new_cov=42/49	polymorphism_frequency=4.396e-01	polymorphism_score=206.3	prediction=polymorphism	ref_cov=48/68	total_cov=90/117
RA	2773	.	1	90964	0	T	C	bias_e_value=380834	bias_p_value=0.179622	consensus_reject=FREQUENCY_CUTOFF	consensus_score=98.5	fisher_strand_p_value=0.138089	frequency=4.021e-01	ks_quality_p_value=0.314436	major_base=T	major_cov=44/69	major_frequency=5.979e-01	minor_base=C	minor_cov=38/38	new_cov=38/38	polymorphism_frequency=4.021e-01	polymorphism_score=164.2	prediction=polymorphism	ref_cov=44/69	total_cov=82/107
RA	2774	.	1	90973	0	G	A	bias_e_value=1359780	bias_p_value=0.641349	consensus_reject=FREQUENCY_CUTOFF	consensus_score=115.1	fisher_strand_p_value=0.56152	frequency=4.061e-01	ks_quality_p_value=0.505565	major_base=G	major_cov=49/68	major_frequency=5.939e-01	minor_base=A	minor_cov=37/43	new_cov=37/43	polymorphism_frequency=4.061e-01	polymorphism_score=170.7	prediction=polymorphism	ref_cov=49/68	total_cov=86/111
RA	2775	.	1	91005	0	G	C	consensus_score=579.0	frequency=1	major_base=C	major_cov=93/103	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=93/103	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=93/103
RA	2776	.	1	91020	0	G	A	bias_e_value=523213	bias_p_value=0.246776	consensus_reject=FREQUENCY_CUTOFF	consensus_score=44.8	fisher_strand_p_value=0.776032	frequency=4.300e-01	ks_quality_p_value=0.0857038	major_base=G	major_cov=53/61	major_frequency=5.700e-01	minor_base=A	minor_cov=42/44	new_cov=42/44	polymorphism_frequency=4.300e-01	polymorphism_score=183.4	prediction=polymorphism	ref_cov=53/61	total_cov=95/105
RA	2777	.	1	91039	0	C	T	bias_e_value=183318	bias_p_value=0.0864629	consensus_reject=FREQUENCY_CUTOFF	consensus_score=70.6	fisher_strand_p_value=0.257006	frequency=4.356e-01	ks_quality_p_value=0.0663332	major_base=C	major_cov=55/59	major_frequency=5.644e-01	minor_base=T	minor_cov=50/38	new_cov=50/38	polymorphism_frequency=4.356e-01	polymorphism_score=181.9	prediction=polymorphism	ref_cov=55/59	total_cov=105/97
RA	2778	.	1	91065	0	T	A	bias_e_value=938056	bias_p_value=0.442439	consensus_reject=FREQUENCY_CUTOFF	consensus_score=75.9	fisher_strand_p_value=0.253116	frequency=4.495e-01	ks_quality_p_value=0.609125	major_base=T	major_cov=49/60	major_frequency=5.505e-01	minor_base=A	minor_cov=48/41	new_cov=48/41	polymorphism_frequency=4.495e-01	polymorphism_score=306.5	prediction=polymorphism	ref_cov=49/60	total_cov=97/101
RA	2779	.	1	91111	0	T	C	consensus_score=302.1	frequency=1	major_base=C	major_cov=53/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/45
RA	2780	.	1	91140	0	T	.	consensus_score=388.3	frequency=1	major_base=.	major_cov=49/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/42
RA	2781	.	1	91180	0	A	G	consensus_score=260.0	frequency=1	major_base=G	major_cov=49/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/40
RA	2782	.	1	91207	0	T	C	consensus_score=261.8	frequency=1	major_base=C	major_cov=45/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/43
RA	2783	.	1	91237	0	C	T	consensus_score=252.0	frequency=1	major_base=T	major_cov=48/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/40
RA	2784	.	1	91427	0	A	G	consensus_score=180.8	frequency=1	major_base=G	major_cov=23/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/39
RA	2785	.	1	91485	0	G	A	consensus_score=79.0	frequency=1	major_base=A	major_cov=14/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/15
RA	2786	.	1	91505	0	C	T	consensus_score=124.1	frequency=1	major_base=T	major_cov=23/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/20
RA	2787	.	1	91515	0	C	G	consensus_score=130.0	frequency=1	major_base=G	major_cov=23/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/23
RA	2788	.	1	91724	0	T	C	consensus_score=83.6	frequency=1	major_base=C	major_cov=17/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/12
RA	2789	.	1	91727	0	G	A	consensus_score=81.5	frequency=1	major_base=A	major_cov=17/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/12
RA	2790	.	1	91742	0	G	T	consensus_score=38.7	deleted=1	frequency=1	major_base=T	major_cov=6/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/9
RA	2791	.	1	92589	0	C	A	consensus_score=121.5	frequency=1	major_base=A	major_cov=31/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/14
RA	2792	.	1	92595	0	C	A	consensus_score=127.1	frequency=1	major_base=A	major_cov=31/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/14
RA	2793	.	1	92598	0	C	A	consensus_score=121.1	frequency=1	major_base=A	major_cov=31/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/14
RA	2794	.	1	92600	0	T	A	consensus_score=118.6	frequency=1	major_base=A	major_cov=31/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/14
RA	2795	.	1	92604	0	G	A	consensus_score=120.2	frequency=1	major_base=A	major_cov=31/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/14
RA	2796	.	1	92608	0	G	A	consensus_score=120.2	frequency=1	major_base=A	major_cov=31/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/14
RA	2797	.	1	92612	1	.	A	consensus_score=119.8	frequency=1	major_base=A	major_cov=31/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/14
RA	2798	.	1	92642	0	C	T	consensus_score=176.0	frequency=1	major_base=T	major_cov=39/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/23
RA	2799	.	1	92645	0	G	C	consensus_score=182.0	frequency=1	major_base=C	major_cov=39/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/23
RA	2800	.	1	92666	0	G	A	consensus_score=226.7	frequency=1	major_base=A	major_cov=50/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/31
RA	2801	.	1	92675	0	G	C	consensus_score=261.7	frequency=1	major_base=C	major_cov=58/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/33
RA	2802	.	1	92678	0	A	G	consensus_score=256.1	frequency=1	major_base=G	major_cov=58/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/33
RA	2803	.	1	92689	0	C	T	consensus_score=278.4	frequency=1	major_base=T	major_cov=62/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/33
RA	2804	.	1	92693	0	G	C	consensus_score=278.7	frequency=1	major_base=C	major_cov=62/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/32
RA	2805	.	1	92708	0	A	G	consensus_score=319.1	frequency=1	major_base=G	major_cov=71/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=71/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=71/35
RA	2806	.	1	92713	0	C	G	consensus_score=297.9	frequency=1	major_base=G	major_cov=71/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=71/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=71/35
RA	2807	.	1	92908	0	T	C	consensus_score=33.7	frequency=1	major_base=C	major_cov=12/1	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/1	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/1
RA	2808	.	1	92912	0	T	C	consensus_score=33.4	frequency=1	major_base=C	major_cov=12/1	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/1	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/1
RA	2809	.	1	92914	0	T	G	consensus_score=33.7	frequency=1	major_base=G	major_cov=12/1	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/1	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/1
RA	2810	.	1	92929	0	G	C	bias_e_value=1106500	bias_p_value=0.521888	consensus_score=20.9	fisher_strand_p_value=0.2	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=8/1	major_frequency=9.000e-01	minor_base=G	minor_cov=0/1	new_cov=8/1	polymorphism_frequency=9.000e-01	polymorphism_score=-3.9	prediction=consensus	ref_cov=0/1	total_cov=8/2
RA	2811	.	1	92936	0	G	A	bias_e_value=816127	bias_p_value=0.38493	consensus_score=12.9	fisher_strand_p_value=0.125	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=7/0	major_frequency=8.750e-01	minor_base=G	minor_cov=0/1	new_cov=7/0	polymorphism_frequency=8.750e-01	polymorphism_score=-5.6	prediction=consensus	ref_cov=0/1	total_cov=7/1
RA	2812	.	1	92951	0	G	C	consensus_score=30.8	frequency=1	major_base=C	major_cov=12/1	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/1	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/1
RA	2813	.	1	92975	0	T	C	bias_e_value=440157	bias_p_value=0.207602	consensus_score=43.8	fisher_strand_p_value=0.0526316	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=18/0	major_frequency=9.474e-01	minor_base=T	minor_cov=0/1	new_cov=18/0	polymorphism_frequency=9.474e-01	polymorphism_score=-6.5	prediction=consensus	ref_cov=0/1	total_cov=18/1
RA	2814	.	1	92990	0	G	A	bias_e_value=423587	bias_p_value=0.199787	consensus_score=47.6	fisher_strand_p_value=0.05	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=19/0	major_frequency=9.500e-01	minor_base=C	minor_cov=0/1	new_cov=19/0	polymorphism_frequency=9.500e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/1
RA	2815	.	1	92991	0	T	C	consensus_score=55.6	frequency=1	major_base=C	major_cov=19/1	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/1	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/1
RA	2816	.	1	92993	0	G	C	consensus_score=54.0	frequency=1	major_base=C	major_cov=19/1	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/1	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/1
RA	2817	.	1	92995	0	A	G	consensus_score=49.8	frequency=1	major_base=G	major_cov=19/1	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/1	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/1
RA	2818	.	1	93002	0	C	G	consensus_score=53.9	frequency=1	major_base=G	major_cov=19/1	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/1	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/1
RA	2819	.	1	93005	0	A	G	consensus_score=49.9	frequency=1	major_base=G	major_cov=19/1	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/1	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/1
RA	2820	.	1	93008	0	A	G	consensus_score=49.5	frequency=1	major_base=G	major_cov=19/1	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/1	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/1
RA	2821	.	1	93011	0	C	T	consensus_score=53.3	frequency=1	major_base=T	major_cov=19/1	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/1	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/1
RA	2822	.	1	93029	0	T	G	consensus_score=96.9	frequency=1	major_base=G	major_cov=32/1	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/1	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/1
RA	2823	.	1	93030	0	T	C	consensus_score=94.3	frequency=1	major_base=C	major_cov=32/1	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/1	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/1
RA	2824	.	1	93033	0	C	G	consensus_score=98.8	frequency=1	major_base=G	major_cov=32/1	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/1	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/1
RA	2825	.	1	93035	0	T	G	consensus_score=87.5	frequency=1	major_base=G	major_cov=32/1	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/1	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/1
RA	2826	.	1	93038	0	A	C	consensus_score=90.8	frequency=1	major_base=C	major_cov=32/1	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/1	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/1
RA	2827	.	1	93047	0	G	C	consensus_score=103.5	frequency=1	major_base=C	major_cov=35/1	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/1	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/1
RA	2828	.	1	93050	0	A	G	consensus_score=93.6	frequency=1	major_base=G	major_cov=35/1	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/1	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/1
RA	2829	.	1	93053	0	G	C	consensus_score=97.0	frequency=1	major_base=C	major_cov=35/1	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/1	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/1
RA	2830	.	1	93056	0	A	G	consensus_score=96.2	frequency=1	major_base=G	major_cov=35/1	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/1	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/1
RA	2831	.	1	93061	0	C	T	consensus_score=105.1	frequency=1	major_base=T	major_cov=35/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/2
RA	2832	.	1	93089	0	A	G	consensus_score=154.6	frequency=1	major_base=G	major_cov=47/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/5
RA	2833	.	1	93101	0	G	C	consensus_score=164.2	frequency=1	major_base=C	major_cov=48/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/9
RA	2834	.	1	93104	0	G	C	consensus_score=161.5	frequency=1	major_base=C	major_cov=48/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/9
RA	2835	.	1	93107	0	C	T	consensus_score=162.6	frequency=1	major_base=T	major_cov=48/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/9
RA	2836	.	1	93131	0	G	C	consensus_score=180.1	frequency=1	major_base=C	major_cov=49/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/12
RA	2837	.	1	93161	0	C	T	consensus_score=196.3	frequency=1	major_base=T	major_cov=48/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/22
RA	2838	.	1	93182	0	C	G	consensus_score=233.9	frequency=1	major_base=G	major_cov=51/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/27
RA	2839	.	1	93239	0	T	C	consensus_score=232.7	frequency=1	major_base=C	major_cov=45/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/35
RA	2840	.	1	93256	0	G	A	consensus_score=210.7	frequency=1	major_base=A	major_cov=36/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/35
RA	2841	.	1	93281	0	G	T	consensus_score=199.6	frequency=1	major_base=T	major_cov=31/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/36
RA	2842	.	1	93284	0	A	C	consensus_score=189.1	frequency=1	major_base=C	major_cov=31/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/36
RA	2843	.	1	93287	0	G	C	consensus_score=198.0	frequency=1	major_base=C	major_cov=31/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/36
RA	2844	.	1	93290	0	G	A	consensus_score=190.3	frequency=1	major_base=A	major_cov=31/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/36
RA	2845	.	1	93299	0	T	C	consensus_score=183.9	frequency=1	major_base=C	major_cov=30/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/34
RA	2846	.	1	93302	0	A	G	consensus_score=188.8	frequency=1	major_base=G	major_cov=30/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/34
RA	2847	.	1	93305	0	G	A	consensus_score=185.4	frequency=1	major_base=A	major_cov=30/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/34
RA	2848	.	1	93316	0	G	C	consensus_score=184.2	frequency=1	major_base=C	major_cov=27/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/34
RA	2849	.	1	93320	0	G	A	consensus_score=175.4	frequency=1	major_base=A	major_cov=27/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/34
RA	2850	.	1	93326	0	T	G	consensus_score=126.2	frequency=1	major_base=G	major_cov=19/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/25
RA	2851	.	1	93329	0	G	C	consensus_score=131.3	frequency=1	major_base=C	major_cov=19/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/25
RA	2852	.	1	93332	0	A	C	consensus_score=133.0	frequency=1	major_base=C	major_cov=19/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/25
RA	2853	.	1	93335	0	C	T	consensus_score=120.7	frequency=1	major_base=T	major_cov=19/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/25
RA	2854	.	1	93337	0	C	G	consensus_score=131.2	frequency=1	major_base=G	major_cov=19/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/25
RA	2855	.	1	93338	0	G	T	consensus_score=119.3	frequency=1	major_base=T	major_cov=19/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/25
RA	2856	.	1	93339	0	C	G	consensus_score=129.6	frequency=1	major_base=G	major_cov=19/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/25
RA	2857	.	1	93340	0	T	A	consensus_score=121.2	frequency=1	major_base=A	major_cov=19/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/25
RA	2858	.	1	93344	0	A	G	consensus_score=128.2	frequency=1	major_base=G	major_cov=19/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/25
RA	2859	.	1	93352	0	T	G	consensus_score=157.5	frequency=1	major_base=G	major_cov=26/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/28
RA	2860	.	1	93356	0	C	T	consensus_score=149.9	frequency=1	major_base=T	major_cov=26/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/28
RA	2861	.	1	93358	0	A	C	consensus_score=159.9	frequency=1	major_base=C	major_cov=26/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/28
RA	2862	.	1	93365	0	A	G	consensus_score=161.9	frequency=1	major_base=G	major_cov=28/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/28
RA	2863	.	1	93371	0	G	A	consensus_score=161.7	frequency=1	major_base=A	major_cov=28/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/29
RA	2864	.	1	93398	0	T	C	consensus_score=181.4	frequency=1	major_base=C	major_cov=33/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/30
RA	2865	.	1	93428	0	C	A	consensus_score=166.5	frequency=1	major_base=A	major_cov=27/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/32
RA	2866	.	1	93448	0	C	A	consensus_score=188.4	frequency=1	major_base=A	major_cov=37/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/27
RA	2867	.	1	93452	0	T	C	consensus_score=186.0	frequency=1	major_base=C	major_cov=37/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/27
RA	2868	.	1	93470	0	C	T	consensus_score=205.2	frequency=1	major_base=T	major_cov=45/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/27
RA	2869	.	1	93542	0	C	G	bias_e_value=2083810	bias_p_value=0.982838	consensus_score=228.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.820546	major_base=G	major_cov=46/33	major_frequency=9.875e-01	minor_base=C	minor_cov=1/0	new_cov=46/33	polymorphism_frequency=9.875e-01	polymorphism_score=-3.8	prediction=consensus	ref_cov=1/0	total_cov=47/33
RA	2870	.	1	93563	0	T	C	consensus_score=252.5	frequency=1	major_base=C	major_cov=46/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/38
RA	2871	.	1	93590	0	A	C	consensus_score=234.0	frequency=1	major_base=C	major_cov=41/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/37
RA	2872	.	1	93592	0	T	C	consensus_score=231.2	frequency=1	major_base=C	major_cov=41/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/37
RA	2873	.	1	93600	0	T	C	consensus_score=223.7	frequency=1	major_base=C	major_cov=40/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/35
RA	2874	.	1	93601	0	T	C	consensus_score=222.5	frequency=1	major_base=C	major_cov=40/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/35
RA	2875	.	1	93606	0	G	C	consensus_score=238.7	frequency=1	major_base=C	major_cov=43/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/36
RA	2876	.	1	93611	0	G	C	consensus_score=227.0	frequency=1	major_base=C	major_cov=43/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/36
RA	2877	.	1	93617	0	A	T	consensus_score=229.6	frequency=1	major_base=T	major_cov=43/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/37
RA	2878	.	1	93641	0	G	A	consensus_score=234.8	frequency=1	major_base=A	major_cov=41/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/41
RA	2879	.	1	93644	0	C	G	consensus_score=247.2	frequency=1	major_base=G	major_cov=41/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/41
RA	2880	.	1	93647	0	G	A	consensus_score=242.5	frequency=1	major_base=A	major_cov=41/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/41
RA	2881	.	1	93655	0	C	G	consensus_score=248.5	frequency=1	major_base=G	major_cov=38/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/45
RA	2882	.	1	93656	0	A	G	consensus_score=236.8	frequency=1	major_base=G	major_cov=38/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/45
RA	2883	.	1	93662	0	G	C	consensus_score=249.5	frequency=1	major_base=C	major_cov=40/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/47
RA	2884	.	1	93674	0	A	C	consensus_score=274.8	frequency=1	major_base=C	major_cov=44/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/47
RA	2885	.	1	93686	0	G	C	consensus_score=248.0	frequency=1	major_base=C	major_cov=38/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/48
RA	2886	.	1	93711	0	T	C	consensus_score=247.6	frequency=1	major_base=C	major_cov=39/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/48
RA	2887	.	1	93713	0	C	G	consensus_score=255.0	frequency=1	major_base=G	major_cov=39/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/48
RA	2888	.	1	93728	0	T	G	consensus_score=223.8	frequency=1	major_base=G	major_cov=39/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/47
RA	2889	.	1	93729	0	T	A	consensus_score=227.4	frequency=1	major_base=A	major_cov=39/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/47
RA	2890	.	1	93743	0	A	C	bias_e_value=1782100	bias_p_value=0.840534	consensus_score=201.7	fisher_strand_p_value=0.493827	frequency=1	ks_quality_p_value=0.995074	major_base=C	major_cov=39/41	major_frequency=9.877e-01	minor_base=A	minor_cov=1/0	new_cov=39/41	polymorphism_frequency=9.877e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=40/41
RA	2891	.	1	93767	0	G	A	bias_e_value=2120200	bias_p_value=1	consensus_score=217.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=46/41	major_frequency=9.886e-01	minor_base=G	minor_cov=1/0	new_cov=46/41	polymorphism_frequency=9.886e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=47/41
RA	2892	.	1	93769	0	C	T	bias_e_value=272467	bias_p_value=0.12851	consensus_score=206.1	fisher_strand_p_value=0.0281105	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=41/41	major_frequency=9.318e-01	minor_base=G	minor_cov=6/0	new_cov=41/41	polymorphism_frequency=9.318e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/41
RA	2893	.	1	93776	0	C	G	consensus_score=239.5	frequency=1	major_base=G	major_cov=50/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/41
RA	2894	.	1	93902	0	A	G	bias_e_value=2119540	bias_p_value=0.999692	consensus_score=184.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.975272	major_base=G	major_cov=54/17	major_frequency=9.861e-01	minor_base=C	minor_cov=1/0	new_cov=54/17	polymorphism_frequency=9.861e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/17
RA	2895	.	1	93911	0	G	A	consensus_score=186.8	frequency=1	major_base=A	major_cov=50/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/16
RA	2896	.	1	93914	0	C	G	consensus_score=197.8	frequency=1	major_base=G	major_cov=50/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/16
RA	2897	.	1	93931	0	T	G	bias_e_value=2119990	bias_p_value=0.999902	consensus_score=199.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.986014	major_base=G	major_cov=57/14	major_frequency=9.861e-01	minor_base=T	minor_cov=1/0	new_cov=57/14	polymorphism_frequency=9.861e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=58/14
RA	2898	.	1	93959	0	G	A	consensus_score=213.4	frequency=1	major_base=A	major_cov=52/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/24
RA	2899	.	1	93988	0	G	C	consensus_score=241.3	frequency=1	major_base=C	major_cov=56/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/25
RA	2900	.	1	93990	0	G	C	consensus_score=242.2	frequency=1	major_base=C	major_cov=56/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/25
RA	2901	.	1	94025	0	G	A	consensus_score=208.8	frequency=1	major_base=A	major_cov=51/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/23
RA	2902	.	1	94049	0	G	C	consensus_score=219.1	frequency=1	major_base=C	major_cov=52/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/25
RA	2903	.	1	94052	0	T	C	consensus_score=228.0	frequency=1	major_base=C	major_cov=52/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/25
RA	2904	.	1	94059	0	C	.	consensus_score=349.9	frequency=1	major_base=.	major_cov=55/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/27
RA	2905	.	1	94064	1	.	T	consensus_score=242.5	frequency=1	major_base=T	major_cov=55/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/27
RA	2906	.	1	94073	0	A	C	consensus_score=255.2	frequency=1	major_base=C	major_cov=57/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/32
RA	2907	.	1	94085	0	C	T	consensus_score=289.0	frequency=1	major_base=T	major_cov=62/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/38
RA	2908	.	1	94091	0	C	T	consensus_score=303.2	frequency=1	major_base=T	major_cov=62/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/41
RA	2909	.	1	94097	0	G	A	consensus_score=310.2	frequency=1	major_base=A	major_cov=62/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/42
RA	2910	.	1	94100	0	G	C	consensus_score=311.4	frequency=1	major_base=C	major_cov=62/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/42
RA	2911	.	1	94112	0	G	A	consensus_score=324.6	frequency=1	major_base=A	major_cov=68/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=68/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/47
RA	2912	.	1	94121	0	C	T	consensus_score=297.6	frequency=1	major_base=T	major_cov=63/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/40
RA	2913	.	1	94124	0	C	T	consensus_score=294.6	frequency=1	major_base=T	major_cov=63/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/40
RA	2914	.	1	94127	0	C	T	consensus_score=294.6	frequency=1	major_base=T	major_cov=63/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/40
RA	2915	.	1	94178	0	G	T	consensus_score=314.8	frequency=1	major_base=T	major_cov=59/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/50
RA	2916	.	1	94199	0	C	A	consensus_score=296.3	frequency=1	major_base=A	major_cov=61/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/44
RA	2917	.	1	94208	0	A	G	consensus_score=308.5	frequency=1	major_base=G	major_cov=59/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/43
RA	2918	.	1	94210	0	C	T	consensus_score=301.5	frequency=1	major_base=T	major_cov=59/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/43
RA	2919	.	1	94226	0	T	G	consensus_score=283.9	frequency=1	major_base=G	major_cov=58/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/43
RA	2920	.	1	94241	0	A	G	consensus_score=294.0	frequency=1	major_base=G	major_cov=55/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/43
RA	2921	.	1	94244	0	A	G	consensus_score=278.6	frequency=1	major_base=G	major_cov=55/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/43
RA	2922	.	1	94246	0	A	C	bias_e_value=1706460	bias_p_value=0.804858	consensus_score=278.3	fisher_strand_p_value=0.444444	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=55/43	major_frequency=9.899e-01	minor_base=A	minor_cov=0/1	new_cov=55/43	polymorphism_frequency=9.899e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=55/44
RA	2923	.	1	94249	0	T	G	consensus_score=287.7	frequency=1	major_base=G	major_cov=55/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/44
RA	2924	.	1	94271	0	C	T	bias_e_value=1738460	bias_p_value=0.819953	consensus_score=310.3	fisher_strand_p_value=0.463636	frequency=1	ks_quality_p_value=0.999833	major_base=T	major_cov=50/59	major_frequency=9.909e-01	minor_base=G	minor_cov=1/0	new_cov=50/59	polymorphism_frequency=9.909e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/59
RA	2925	.	1	94294	0	A	G	consensus_score=255.7	frequency=1	major_base=G	major_cov=36/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/51
RA	2926	.	1	94295	0	A	C	consensus_score=247.8	frequency=1	major_base=C	major_cov=36/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/51
RA	2927	.	1	94298	0	C	T	consensus_score=257.4	frequency=1	major_base=T	major_cov=36/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/51
RA	2928	.	1	94301	0	T	G	bias_e_value=1650630	bias_p_value=0.778529	consensus_score=254.1	fisher_strand_p_value=0.413793	frequency=1	ks_quality_p_value=0.998931	major_base=G	major_cov=35/51	major_frequency=9.885e-01	minor_base=T	minor_cov=1/0	new_cov=35/51	polymorphism_frequency=9.885e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=36/51
RA	2929	.	1	94307	0	G	C	consensus_score=262.2	frequency=1	major_base=C	major_cov=36/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/51
RA	2930	.	1	94309	0	G	A	consensus_score=249.5	frequency=1	major_base=A	major_cov=36/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/51
RA	2931	.	1	94310	0	C	T	consensus_score=246.8	frequency=1	major_base=T	major_cov=36/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/51
RA	2932	.	1	94327	0	C	G	consensus_score=291.2	frequency=1	major_base=G	major_cov=46/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/51
RA	2933	.	1	94337	0	A	C	consensus_score=268.1	frequency=1	major_base=C	major_cov=45/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/49
RA	2934	.	1	94355	0	C	T	consensus_score=271.1	frequency=1	major_base=T	major_cov=44/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/51
RA	2935	.	1	94423	0	G	C	consensus_score=389.2	frequency=1	major_base=C	major_cov=54/73	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/73	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/73
RA	2936	.	1	94439	0	A	G	consensus_score=391.0	frequency=1	major_base=G	major_cov=52/75	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/75	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/75
RA	2937	.	1	94454	0	A	G	consensus_score=385.1	frequency=1	major_base=G	major_cov=51/79	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/79	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/79
RA	2938	.	1	94472	0	G	T	consensus_score=402.2	frequency=1	major_base=T	major_cov=54/82	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/82	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/82
RA	2939	.	1	94496	0	A	G	consensus_score=409.8	frequency=1	major_base=G	major_cov=62/78	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/78	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/78
RA	2940	.	1	94511	0	C	G	consensus_score=409.2	frequency=1	major_base=G	major_cov=63/72	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/72	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/72
RA	2941	.	1	94517	0	C	T	consensus_score=385.4	frequency=1	major_base=T	major_cov=63/72	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/72	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/72
RA	2942	.	1	94541	0	G	A	consensus_score=428.9	frequency=1	major_base=A	major_cov=67/75	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=67/75	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/75
RA	2943	.	1	94574	0	T	C	consensus_score=428.7	frequency=1	major_base=C	major_cov=57/81	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/81	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/81
RA	2944	.	1	94583	0	A	T	consensus_score=397.2	frequency=1	major_base=T	major_cov=52/79	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/79	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/79
RA	2945	.	1	94586	0	A	G	consensus_score=383.5	frequency=1	major_base=G	major_cov=52/79	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/79	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/79
RA	2946	.	1	94587	0	G	T	consensus_score=371.7	frequency=1	major_base=T	major_cov=52/79	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/79	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/79
RA	2947	.	1	94619	0	G	A	consensus_score=354.1	frequency=1	major_base=A	major_cov=50/74	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/74	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/74
RA	2948	.	1	94622	0	C	A	consensus_score=362.9	frequency=1	major_base=A	major_cov=50/74	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/74	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/74
RA	2949	.	1	94625	0	C	G	consensus_score=367.1	frequency=1	major_base=G	major_cov=50/74	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/74	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/74
RA	2950	.	1	94984	0	G	A	consensus_score=122.3	frequency=1	major_base=A	major_cov=17/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/27
RA	2951	.	1	94987	0	G	A	consensus_score=122.9	frequency=1	major_base=A	major_cov=17/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/27
RA	2952	.	1	94990	0	G	A	bias_e_value=2120180	bias_p_value=0.999991	consensus_score=112.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.995781	major_base=A	major_cov=17/26	major_frequency=9.773e-01	minor_base=T	minor_cov=0/1	new_cov=17/26	polymorphism_frequency=9.773e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/27
RA	2953	.	1	95008	0	A	G	consensus_score=120.9	frequency=1	major_base=G	major_cov=18/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/26
RA	2954	.	1	95053	0	T	C	consensus_score=52.0	deleted=1	frequency=1	major_base=C	major_cov=10/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/9
RA	2955	.	1	95056	0	G	A	consensus_score=48.8	deleted=1	frequency=1	major_base=A	major_cov=10/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/9
RA	2956	.	1	101620	0	T	C	consensus_score=284.4	frequency=1	major_base=C	major_cov=46/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/52
RA	2957	.	1	101623	0	T	C	consensus_score=298.9	frequency=1	major_base=C	major_cov=47/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/52
RA	2958	.	1	101644	0	A	G	consensus_score=289.7	frequency=1	major_base=G	major_cov=54/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/45
RA	2959	.	1	101656	0	A	G	consensus_score=284.7	frequency=1	major_base=G	major_cov=52/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/43
RA	2960	.	1	101662	0	G	A	consensus_score=270.3	frequency=1	major_base=A	major_cov=49/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/46
RA	2961	.	1	101770	0	C	T	consensus_score=262.0	frequency=1	major_base=T	major_cov=49/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/43
RA	2962	.	1	101800	0	A	G	bias_e_value=1779990	bias_p_value=0.839541	consensus_score=299.4	fisher_strand_p_value=0.49	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=48/51	major_frequency=9.900e-01	minor_base=A	minor_cov=1/0	new_cov=48/51	polymorphism_frequency=9.900e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=49/51
RA	2963	.	1	101827	0	A	G	consensus_score=315.7	frequency=1	major_base=G	major_cov=52/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/53
RA	2964	.	1	101830	0	G	A	consensus_score=311.9	frequency=1	major_base=A	major_cov=52/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/53
RA	2965	.	1	101839	0	G	A	consensus_score=310.5	frequency=1	major_base=A	major_cov=51/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/57
RA	2966	.	1	101857	0	A	G	consensus_score=325.8	frequency=1	major_base=G	major_cov=48/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/60
RA	2967	.	1	101879	0	T	G	consensus_score=315.6	frequency=1	major_base=G	major_cov=48/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/61
RA	2968	.	1	101881	0	A	G	consensus_score=313.2	frequency=1	major_base=G	major_cov=48/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/61
RA	2969	.	1	101914	0	C	T	consensus_score=304.2	frequency=1	major_base=T	major_cov=44/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/63
RA	2970	.	1	101974	0	A	T	consensus_score=301.3	frequency=1	major_base=T	major_cov=45/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/61
RA	2971	.	1	101983	0	T	C	consensus_score=296.7	frequency=1	major_base=C	major_cov=44/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/58
RA	2972	.	1	101986	0	T	G	consensus_score=308.7	frequency=1	major_base=G	major_cov=45/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/59
RA	2973	.	1	102011	0	C	T	bias_e_value=1711890	bias_p_value=0.807421	consensus_score=297.6	fisher_strand_p_value=0.447619	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=46/58	major_frequency=9.905e-01	minor_base=G	minor_cov=1/0	new_cov=46/58	polymorphism_frequency=9.905e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/58
RA	2974	.	1	102112	0	C	T	consensus_score=276.5	frequency=1	major_base=T	major_cov=52/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/41
RA	2975	.	1	102150	0	G	A	consensus_score=199.1	frequency=1	major_base=A	major_cov=42/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/29
RA	2976	.	1	102193	0	G	A	consensus_score=148.5	frequency=1	major_base=A	major_cov=32/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/22
RA	2977	.	1	102205	0	G	C	consensus_score=150.8	frequency=1	major_base=C	major_cov=31/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/21
RA	2978	.	1	102247	0	A	G	consensus_score=93.5	frequency=1	major_base=G	major_cov=18/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/16
RA	2979	.	1	102256	0	T	G	consensus_score=85.8	frequency=1	major_base=G	major_cov=18/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/13
RA	2980	.	1	102274	0	G	A	consensus_score=55.8	deleted=1	frequency=1	major_base=A	major_cov=11/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/10
RA	2981	.	1	102278	0	G	C	consensus_score=30.0	deleted=1	frequency=1	major_base=C	major_cov=6/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/6
RA	2982	.	1	102280	0	G	A	consensus_score=29.9	deleted=1	frequency=1	major_base=A	major_cov=6/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/6
RA	2983	.	1	102448	0	T	.	consensus_score=10.1	deleted=1	frequency=1	major_base=.	major_cov=3/1	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/1	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/1
RA	2984	.	1	102489	0	T	C	consensus_score=21.7	deleted=1	frequency=1	major_base=C	major_cov=8/1	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/1	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/1
RA	2985	.	1	102495	0	C	G	consensus_score=30.7	deleted=1	frequency=1	major_base=G	major_cov=11/1	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/1	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/1
RA	2986	.	1	102500	0	A	G	consensus_score=52.0	deleted=1	frequency=1	major_base=G	major_cov=16/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/3
RA	2987	.	1	102533	0	A	G	consensus_score=91.7	frequency=1	major_base=G	major_cov=19/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/12
RA	2988	.	1	102540	0	C	A	consensus_score=98.8	frequency=1	major_base=A	major_cov=20/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/15
RA	2989	.	1	102543	0	T	C	consensus_score=97.8	frequency=1	major_base=C	major_cov=20/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/15
RA	2990	.	1	102552	0	C	T	consensus_score=102.7	frequency=1	major_base=T	major_cov=21/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/16
RA	2991	.	1	102558	0	A	T	consensus_score=110.2	frequency=1	major_base=T	major_cov=22/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/17
RA	2992	.	1	102563	0	G	C	consensus_score=110.7	frequency=1	major_base=C	major_cov=22/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/17
RA	2993	.	1	102566	0	T	C	consensus_score=113.3	frequency=1	major_base=C	major_cov=22/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/17
RA	2994	.	1	102570	0	G	A	consensus_score=113.0	frequency=1	major_base=A	major_cov=22/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/17
RA	2995	.	1	102657	0	G	C	consensus_score=124.6	frequency=1	major_base=C	major_cov=24/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/20
RA	2996	.	1	102743	0	T	A	consensus_score=79.7	frequency=1	major_base=A	major_cov=9/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/20
RA	2997	.	1	102745	0	A	C	consensus_score=84.3	frequency=1	major_base=C	major_cov=9/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/20
RA	2998	.	1	102751	0	G	A	consensus_score=70.9	frequency=1	major_base=A	major_cov=8/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/18
RA	2999	.	1	102793	0	T	C	consensus_score=15.9	deleted=1	frequency=1	major_base=C	major_cov=3/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/4
RA	3000	.	1	103267	0	T	C	consensus_score=70.2	frequency=1	major_base=C	major_cov=17/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/8
RA	3001	.	1	103282	0	C	G	consensus_score=82.0	frequency=1	major_base=G	major_cov=20/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/10
RA	3002	.	1	103327	0	A	G	consensus_score=155.5	frequency=1	major_base=G	major_cov=31/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/25
RA	3003	.	1	103384	0	G	C	consensus_score=206.0	frequency=1	major_base=C	major_cov=40/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/34
RA	3004	.	1	103390	0	C	T	consensus_score=215.2	frequency=1	major_base=T	major_cov=40/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/35
RA	3005	.	1	103417	0	C	A	consensus_score=234.8	frequency=1	major_base=A	major_cov=46/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/37
RA	3006	.	1	103441	0	G	A	consensus_score=247.9	frequency=1	major_base=A	major_cov=50/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/40
RA	3007	.	1	103477	0	C	T	consensus_score=230.9	frequency=1	major_base=T	major_cov=47/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/37
RA	3008	.	1	103487	0	C	T	consensus_score=212.6	frequency=1	major_base=T	major_cov=42/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/36
RA	3009	.	1	103492	0	G	A	consensus_score=197.6	frequency=1	major_base=A	major_cov=42/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/31
RA	3010	.	1	103501	0	G	C	consensus_score=183.7	frequency=1	major_base=C	major_cov=40/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/28
RA	3011	.	1	103522	0	G	C	consensus_score=146.6	frequency=1	major_base=C	major_cov=32/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/23
RA	3012	.	1	103534	0	C	T	consensus_score=137.2	frequency=1	major_base=T	major_cov=31/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/21
RA	3013	.	1	103566	0	G	A	consensus_score=92.3	frequency=1	major_base=A	major_cov=25/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/12
RA	3014	.	1	103570	0	G	A	bias_e_value=2120200	bias_p_value=1	consensus_score=85.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=24/11	major_frequency=9.722e-01	minor_base=G	minor_cov=1/0	new_cov=24/11	polymorphism_frequency=9.722e-01	polymorphism_score=-5.9	prediction=consensus	ref_cov=1/0	total_cov=25/11
RA	3015	.	1	103576	0	C	T	consensus_score=71.2	frequency=1	major_base=T	major_cov=19/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/10
RA	3016	.	1	103582	0	C	A	consensus_score=71.3	frequency=1	major_base=A	major_cov=19/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/10
RA	3017	.	1	103585	0	T	C	consensus_score=74.0	frequency=1	major_base=C	major_cov=19/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/10
RA	3018	.	1	103589	0	T	C	consensus_score=74.4	frequency=1	major_base=C	major_cov=19/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/10
RA	3019	.	1	103593	0	G	.	bias_e_value=2120170	bias_p_value=0.999987	consensus_score=85.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.994904	major_base=.	major_cov=18/9	major_frequency=9.310e-01	minor_base=C	minor_cov=1/1	new_cov=18/9	polymorphism_frequency=9.310e-01	polymorphism_score=2.9	prediction=consensus	ref_cov=0/0	total_cov=19/10
RA	3020	.	1	103596	0	A	C	consensus_score=69.0	frequency=1	major_base=C	major_cov=18/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/9
RA	3021	.	1	103600	1	.	T	consensus_score=65.9	frequency=1	major_base=T	major_cov=18/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/9
RA	3022	.	1	103611	0	C	A	consensus_score=76.9	frequency=1	major_base=A	major_cov=18/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/12
RA	3023	.	1	106009	0	T	G	consensus_score=184.3	frequency=1	major_base=G	major_cov=30/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/34
RA	3024	.	1	108631	0	T	G	bias_e_value=2120200	bias_p_value=1	consensus_score=327.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=66/43	major_frequency=9.909e-01	minor_base=A	minor_cov=1/0	new_cov=66/43	polymorphism_frequency=9.909e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/43
RA	3025	.	1	110063	0	C	T	consensus_score=41.7	frequency=1	major_base=T	major_cov=8/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/8
RA	3026	.	1	111247	0	A	C	consensus_score=440.9	frequency=1	major_base=C	major_cov=73/70	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=73/70	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=73/70
RA	3027	.	1	112193	0	T	C	consensus_score=308.6	frequency=1	major_base=C	major_cov=64/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/41
RA	3028	.	1	114473	0	C	T	consensus_score=284.8	frequency=1	major_base=T	major_cov=56/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/44
RA	3029	.	1	115745	1	.	T	consensus_score=353.0	frequency=1	major_base=T	major_cov=73/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=73/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=73/46
RA	3030	.	1	115745	2	.	T	bias_e_value=1598450	bias_p_value=0.753916	consensus_score=349.4	fisher_strand_p_value=0.386555	frequency=1	ks_quality_p_value=0.999858	major_base=T	major_cov=73/45	major_frequency=9.916e-01	minor_base=.	minor_cov=0/1	new_cov=73/45	polymorphism_frequency=9.916e-01	polymorphism_score=-3.8	prediction=consensus	ref_cov=0/1	total_cov=73/46
RA	3031	.	1	116564	0	G	T	consensus_score=267.3	frequency=1	major_base=T	major_cov=47/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/47
RA	3032	.	1	117852	0	A	G	consensus_score=258.7	frequency=1	major_base=G	major_cov=39/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/50
RA	3033	.	1	118571	0	A	G	bias_e_value=1404710	bias_p_value=0.66254	consensus_score=188.8	fisher_strand_p_value=0.304348	frequency=1	ks_quality_p_value=0.9894	major_base=G	major_cov=48/20	major_frequency=9.855e-01	minor_base=.	minor_cov=0/1	new_cov=48/20	polymorphism_frequency=9.855e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=0/0	total_cov=48/21
RA	3034	.	1	118719	0	G	A	consensus_score=160.5	frequency=1	major_base=A	major_cov=26/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/32
RA	3035	.	1	118765	0	G	T	consensus_score=175.5	frequency=1	major_base=T	major_cov=21/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/40
RA	3036	.	1	120904	1	.	G	consensus_score=324.1	frequency=1	major_base=G	major_cov=51/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/59
RA	3037	.	1	121783	0	G	A	bias_e_value=1615980	bias_p_value=0.762183	consensus_score=377.6	fisher_strand_p_value=0.395349	frequency=1	ks_quality_p_value=0.999879	major_base=A	major_cov=50/78	major_frequency=9.922e-01	minor_base=.	minor_cov=1/0	new_cov=50/78	polymorphism_frequency=9.922e-01	polymorphism_score=-4.8	prediction=consensus	ref_cov=0/0	total_cov=51/78
RA	3038	.	1	123935	0	T	C	consensus_score=332.5	frequency=1	major_base=C	major_cov=61/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/48
RA	3039	.	1	124350	0	A	G	consensus_score=285.5	frequency=1	major_base=G	major_cov=41/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/60
RA	3040	.	1	125219	0	A	G	consensus_score=294.8	frequency=1	major_base=G	major_cov=53/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/49
RA	3041	.	1	127264	0	C	T	consensus_score=253.2	frequency=1	major_base=T	major_cov=40/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/49
RA	3042	.	1	128021	0	C	T	consensus_score=255.8	frequency=1	major_base=T	major_cov=29/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/60
RA	3043	.	1	129402	0	C	T	consensus_score=239.1	frequency=1	major_base=T	major_cov=45/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/39
RA	3044	.	1	129898	0	C	T	consensus_score=199.6	frequency=1	major_base=T	major_cov=39/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/29
RA	3045	.	1	132243	0	G	A	consensus_score=283.4	frequency=1	major_base=A	major_cov=44/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/54
RA	3046	.	1	135303	0	C	.	consensus_score=284.7	frequency=1	major_base=.	major_cov=30/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/38
RA	3047	.	1	135304	0	C	.	consensus_score=284.7	frequency=1	major_base=.	major_cov=30/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/38
RA	3048	.	1	137263	0	A	G	consensus_score=355.7	frequency=1	major_base=G	major_cov=58/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/67
RA	3049	.	1	137504	0	C	.	bias_e_value=641901	bias_p_value=0.302756	consensus_score=447.7	fisher_strand_p_value=0.0883619	frequency=1	ks_quality_p_value=1	major_base=.	major_cov=61/47	major_frequency=9.730e-01	minor_base=A	minor_cov=0/3	new_cov=61/47	polymorphism_frequency=9.730e-01	polymorphism_score=3.3	prediction=consensus	ref_cov=0/0	total_cov=61/52
RA	3050	.	1	138731	0	A	G	consensus_score=298.9	frequency=1	major_base=G	major_cov=46/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/56
RA	3051	.	1	138852	0	A	G	consensus_score=322.4	frequency=1	major_base=G	major_cov=44/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/62
RA	3052	.	1	139059	0	T	C	bias_e_value=2112130	bias_p_value=0.996195	consensus_score=307.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.914046	major_base=C	major_cov=52/56	major_frequency=9.908e-01	minor_base=T	minor_cov=0/1	new_cov=52/56	polymorphism_frequency=9.908e-01	polymorphism_score=-4.9	prediction=consensus	ref_cov=0/1	total_cov=52/57
RA	3053	.	1	139989	0	T	C	consensus_score=420.1	frequency=1	major_base=C	major_cov=82/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=82/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=82/60
RA	3054	.	1	141358	0	A	G	consensus_score=431.7	frequency=1	major_base=G	major_cov=82/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=82/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=82/61
RA	3055	.	1	142359	0	A	G	bias_e_value=1783120	bias_p_value=0.841016	consensus_score=374.5	fisher_strand_p_value=0.492308	frequency=1	ks_quality_p_value=0.999523	major_base=G	major_cov=66/63	major_frequency=9.923e-01	minor_base=A	minor_cov=0/1	new_cov=66/63	polymorphism_frequency=9.923e-01	polymorphism_score=-6.5	prediction=consensus	ref_cov=0/1	total_cov=66/64
RA	3056	.	1	143774	0	G	A	consensus_score=133.7	frequency=1	major_base=A	major_cov=28/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/20
RA	3057	.	1	144195	0	C	T	consensus_score=318.2	frequency=1	major_base=T	major_cov=52/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/61
RA	3058	.	1	148228	0	T	C	consensus_score=451.2	frequency=1	major_base=C	major_cov=88/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=88/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=88/59
RA	3059	.	1	150175	0	C	T	consensus_score=303.0	frequency=1	major_base=T	major_cov=64/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/42
RA	3060	.	1	150689	0	T	C	consensus_score=216.7	frequency=1	major_base=C	major_cov=42/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/31
RA	3061	.	1	153032	0	C	T	consensus_score=351.6	frequency=1	major_base=T	major_cov=60/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/63
RA	3062	.	1	158105	0	C	T	consensus_score=372.1	frequency=1	major_base=T	major_cov=61/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/67
RA	3063	.	1	158234	0	C	T	consensus_score=322.3	frequency=1	major_base=T	major_cov=59/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/50
RA	3064	.	1	158527	0	A	G	consensus_score=177.4	frequency=1	major_base=G	major_cov=35/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/27
RA	3065	.	1	159264	0	G	A	consensus_score=329.7	frequency=1	major_base=A	major_cov=68/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=68/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/46
RA	3066	.	1	159802	0	G	A	consensus_score=314.5	frequency=1	major_base=A	major_cov=53/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/61
RA	3067	.	1	161533	0	T	C	consensus_score=364.4	frequency=1	major_base=C	major_cov=69/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=69/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=69/57
RA	3068	.	1	165909	0	C	T	consensus_score=245.6	frequency=1	major_base=T	major_cov=41/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/46
RA	3069	.	1	166161	0	C	A	bias_e_value=1738800	bias_p_value=0.820114	consensus_score=414.9	fisher_strand_p_value=0.463768	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=74/63	major_frequency=9.928e-01	minor_base=T	minor_cov=0/1	new_cov=74/63	polymorphism_frequency=9.928e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=74/64
RA	3070	.	1	166950	0	C	T	consensus_score=373.4	frequency=1	major_base=T	major_cov=55/76	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/76	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/76
RA	3071	.	1	168278	0	G	A	bias_e_value=0.000991814	bias_p_value=4.67794e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=168.6	fisher_strand_p_value=1.81804e-11	frequency=2.000e-01	ks_quality_p_value=1	major_base=G	major_cov=14/62	major_frequency=8.000e-01	minor_base=A	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.000e-01	polymorphism_score=11.8	prediction=polymorphism	ref_cov=14/62	total_cov=33/62
RA	3072	.	1	168742	0	A	C	consensus_score=338.0	frequency=1	major_base=C	major_cov=43/69	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/69	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/69
RA	3073	.	1	168931	0	C	G	consensus_score=342.7	frequency=1	major_base=G	major_cov=48/68	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/68	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/68
RA	3074	.	1	169141	0	C	T	consensus_score=133.8	frequency=1	major_base=T	major_cov=28/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/18
RA	3075	.	1	169315	0	G	A	consensus_score=97.2	frequency=1	major_base=A	major_cov=20/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/16
RA	3076	.	1	170025	0	C	T	consensus_score=327.9	frequency=1	major_base=T	major_cov=53/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/61
RA	3077	.	1	170286	0	A	G	consensus_score=412.3	frequency=1	major_base=G	major_cov=66/75	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/75	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/75
RA	3078	.	1	171239	0	G	A	consensus_score=234.3	frequency=1	major_base=A	major_cov=43/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/39
RA	3079	.	1	171481	0	G	A	bias_e_value=2120200	bias_p_value=1	consensus_score=447.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=93/71	major_frequency=9.939e-01	minor_base=C	minor_cov=1/0	new_cov=93/71	polymorphism_frequency=9.939e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=94/71
RA	3080	.	1	171611	0	G	T	bias_e_value=8655.63	bias_p_value=0.00408247	consensus_reject=FREQUENCY_CUTOFF	consensus_score=310.9	fisher_strand_p_value=0.000533797	frequency=7.670e-01	ks_quality_p_value=0.883166	major_base=T	major_cov=68/67	major_frequency=7.670e-01	minor_base=G	minor_cov=8/33	new_cov=68/67	polymorphism_frequency=7.670e-01	polymorphism_score=103.9	prediction=polymorphism	ref_cov=8/33	total_cov=76/100
RA	3081	.	1	171629	0	C	G	bias_e_value=19254.4	bias_p_value=0.00908142	consensus_reject=FREQUENCY_CUTOFF	consensus_score=312.6	fisher_strand_p_value=0.002764	frequency=2.660e-01	ks_quality_p_value=0.423998	major_base=C	major_cov=70/68	major_frequency=7.340e-01	minor_base=G	minor_cov=13/37	new_cov=13/37	polymorphism_frequency=2.660e-01	polymorphism_score=136.1	prediction=polymorphism	ref_cov=70/68	total_cov=83/105
RA	3082	.	1	171637	0	A	.	bias_e_value=109647	bias_p_value=0.0517153	consensus_reject=FREQUENCY_CUTOFF	consensus_score=378.1	fisher_strand_p_value=0.00906811	frequency=2.789e-01	ks_quality_p_value=1	major_base=A	major_cov=68/69	major_frequency=7.211e-01	minor_base=.	minor_cov=15/38	new_cov=15/38	polymorphism_frequency=2.789e-01	polymorphism_score=173.7	prediction=polymorphism	ref_cov=68/69	total_cov=83/107
RA	3083	.	1	171676	0	T	G	consensus_score=505.8	frequency=1	major_base=G	major_cov=74/110	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=74/110	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=74/110
RA	3084	.	1	176227	0	G	A	consensus_score=248.9	frequency=1	major_base=A	major_cov=36/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/53
RA	3085	.	1	176425	0	A	G	consensus_score=297.0	frequency=1	major_base=G	major_cov=47/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/53
RA	3086	.	1	178603	0	G	A	consensus_score=381.0	frequency=1	major_base=A	major_cov=69/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=69/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=69/64
RA	3087	.	1	178803	0	T	G	consensus_score=366.4	frequency=1	major_base=G	major_cov=47/73	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/73	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/73
RA	3088	.	1	179040	0	A	G	consensus_score=411.2	frequency=1	major_base=G	major_cov=67/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=67/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/67
RA	3089	.	1	181389	0	G	T	consensus_score=294.6	frequency=1	major_base=T	major_cov=58/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/43
RA	3090	.	1	183492	0	G	A	bias_e_value=3387.87	bias_p_value=0.0015979	consensus_score=187.7	fisher_strand_p_value=0.000164521	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=21/50	major_frequency=8.987e-01	minor_base=C	minor_cov=8/0	new_cov=21/50	polymorphism_frequency=8.987e-01	polymorphism_score=-2.8	prediction=consensus	ref_cov=0/0	total_cov=29/50
RA	3091	.	1	185097	0	T	C	consensus_score=326.1	frequency=1	major_base=C	major_cov=55/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/57
RA	3092	.	1	185655	0	G	A	bias_e_value=2.06851e-05	bias_p_value=9.75623e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=203.4	fisher_strand_p_value=3.27987e-13	frequency=2.414e-01	ks_quality_p_value=1	major_base=G	major_cov=65/23	major_frequency=7.586e-01	minor_base=A	minor_cov=0/28	new_cov=0/28	polymorphism_frequency=2.414e-01	polymorphism_score=20.1	prediction=polymorphism	ref_cov=65/23	total_cov=65/52
RA	3093	.	1	185729	0	G	T	bias_e_value=3.61227e-07	bias_p_value=1.70374e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=127.6	fisher_strand_p_value=5.02209e-15	frequency=3.750e-01	ks_quality_p_value=1	major_base=G	major_cov=14/46	major_frequency=6.250e-01	minor_base=T	minor_cov=36/0	new_cov=36/0	polymorphism_frequency=3.750e-01	polymorphism_score=34.1	prediction=polymorphism	ref_cov=14/46	total_cov=50/46
RA	3094	.	1	185767	0	G	A	bias_e_value=0.876799	bias_p_value=4.13547e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=150.3	fisher_strand_p_value=2.22064e-08	frequency=2.472e-01	ks_quality_p_value=1	major_base=G	major_cov=24/43	major_frequency=7.528e-01	minor_base=A	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.472e-01	polymorphism_score=12.5	prediction=polymorphism	ref_cov=24/43	total_cov=46/43
RA	3095	.	1	186203	0	C	T	consensus_score=254.3	frequency=1	major_base=T	major_cov=40/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/49
RA	3096	.	1	186466	0	G	A	consensus_score=328.2	frequency=1	major_base=A	major_cov=53/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/58
RA	3097	.	1	186844	0	A	C	consensus_score=329.8	frequency=1	major_base=C	major_cov=60/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/54
RA	3098	.	1	187143	0	C	A	consensus_score=323.1	frequency=1	major_base=A	major_cov=60/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/53
RA	3099	.	1	188506	0	G	T	consensus_score=281.5	frequency=1	major_base=T	major_cov=49/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/51
RA	3100	.	1	188781	0	C	T	consensus_score=291.6	frequency=1	major_base=T	major_cov=61/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/42
RA	3101	.	1	188940	0	A	G	consensus_score=300.2	frequency=1	major_base=G	major_cov=50/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/48
RA	3102	.	1	189583	0	C	A	bias_e_value=2119900	bias_p_value=0.999859	consensus_score=286.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.98324	major_base=A	major_cov=45/54	major_frequency=9.802e-01	minor_base=C	minor_cov=1/1	new_cov=45/54	polymorphism_frequency=9.802e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=1/1	total_cov=46/55
RA	3103	.	1	191268	0	T	A	bias_e_value=0.483411	bias_p_value=2.28003e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=170.1	fisher_strand_p_value=1.18434e-08	frequency=2.333e-01	ks_quality_p_value=1	major_base=T	major_cov=23/46	major_frequency=7.667e-01	minor_base=A	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.333e-01	polymorphism_score=12.0	prediction=polymorphism	ref_cov=23/46	total_cov=45/46
RA	3104	.	1	191288	0	G	A	bias_e_value=0.48542	bias_p_value=2.28951e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=170.6	fisher_strand_p_value=1.18953e-08	frequency=2.323e-01	ks_quality_p_value=1	major_base=G	major_cov=28/48	major_frequency=7.677e-01	minor_base=A	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.323e-01	polymorphism_score=11.6	prediction=polymorphism	ref_cov=28/48	total_cov=51/48
RA	3105	.	1	193672	0	T	C	consensus_score=328.6	frequency=1	major_base=C	major_cov=43/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/66
RA	3106	.	1	193988	0	A	G	consensus_score=270.5	frequency=1	major_base=G	major_cov=49/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/40
RA	3107	.	1	194558	0	G	A	consensus_score=384.5	frequency=1	major_base=A	major_cov=59/73	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/73	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/73
RA	3108	.	1	195679	0	G	T	consensus_score=424.5	frequency=1	major_base=T	major_cov=74/69	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=74/69	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=74/69
RA	3109	.	1	197257	0	T	C	consensus_score=426.4	frequency=1	major_base=C	major_cov=75/70	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=75/70	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=75/70
RA	3110	.	1	198300	0	C	T	consensus_score=327.5	frequency=1	major_base=T	major_cov=57/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/58
RA	3111	.	1	198632	0	C	T	bias_e_value=1783250	bias_p_value=0.841077	consensus_score=312.2	fisher_strand_p_value=0.495726	frequency=1	ks_quality_p_value=0.992805	major_base=T	major_cov=57/59	major_frequency=9.915e-01	minor_base=C	minor_cov=1/0	new_cov=57/59	polymorphism_frequency=9.915e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=58/59
RA	3112	.	1	199264	0	G	A	consensus_score=278.9	frequency=1	major_base=A	major_cov=54/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/43
RA	3113	.	1	202590	0	C	G	consensus_score=447.2	frequency=1	major_base=G	major_cov=77/70	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=77/70	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=77/70
RA	3114	.	1	202734	0	G	A	consensus_score=302.4	frequency=1	major_base=A	major_cov=59/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/42
RA	3115	.	1	203099	0	G	A	consensus_score=309.8	frequency=1	major_base=A	major_cov=32/72	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/72	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/72
RA	3116	.	1	207228	0	A	G	consensus_score=315.4	frequency=1	major_base=G	major_cov=43/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/64
RA	3117	.	1	208158	0	C	T	consensus_score=299.2	frequency=1	major_base=T	major_cov=52/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/48
RA	3118	.	1	208826	0	C	T	consensus_score=438.7	frequency=1	major_base=T	major_cov=74/78	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=74/78	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=74/78
RA	3119	.	1	210519	0	A	G	consensus_score=281.5	frequency=1	major_base=G	major_cov=53/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/44
RA	3120	.	1	210995	0	C	T	consensus_score=298.7	frequency=1	major_base=T	major_cov=56/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/49
RA	3121	.	1	214572	0	A	.	consensus_score=476.3	frequency=1	major_base=.	major_cov=61/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/51
RA	3122	.	1	215715	0	A	G	consensus_score=290.5	frequency=1	major_base=G	major_cov=56/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/44
RA	3123	.	1	216521	0	A	C	consensus_score=306.6	frequency=1	major_base=C	major_cov=58/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/46
RA	3124	.	1	216522	0	A	C	consensus_score=298.2	frequency=1	major_base=C	major_cov=58/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/46
RA	3125	.	1	218367	0	G	A	consensus_score=347.7	frequency=1	major_base=A	major_cov=71/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=71/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=71/52
RA	3126	.	1	220101	0	G	A	consensus_score=290.4	frequency=1	major_base=A	major_cov=58/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/44
RA	3127	.	1	220929	0	C	T	consensus_score=239.7	frequency=1	major_base=T	major_cov=46/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/38
RA	3128	.	1	221011	0	A	G	consensus_score=304.6	frequency=1	major_base=G	major_cov=52/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/49
RA	3129	.	1	221341	0	A	G	consensus_score=305.7	frequency=1	major_base=G	major_cov=43/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/60
RA	3130	.	1	221377	0	A	C	consensus_score=322.1	frequency=1	major_base=C	major_cov=46/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/66
RA	3131	.	1	223012	0	C	G	bias_e_value=1656540	bias_p_value=0.781316	consensus_score=251.1	fisher_strand_p_value=0.420455	frequency=1	ks_quality_p_value=0.99064	major_base=G	major_cov=36/51	major_frequency=9.886e-01	minor_base=T	minor_cov=1/0	new_cov=36/51	polymorphism_frequency=9.886e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/51
RA	3132	.	1	223310	0	T	C	consensus_score=333.3	frequency=1	major_base=C	major_cov=42/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/66
RA	3133	.	1	223458	0	C	G	consensus_score=274.0	frequency=1	major_base=G	major_cov=47/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/43
RA	3134	.	1	224388	0	T	C	consensus_score=124.0	frequency=1	major_base=C	major_cov=17/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/25
RA	3135	.	1	225381	0	G	T	consensus_score=406.2	frequency=1	major_base=T	major_cov=65/70	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/70	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/70
RA	3136	.	1	226616	0	A	C	consensus_score=233.0	frequency=1	major_base=C	major_cov=41/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/41
RA	3137	.	1	227989	0	A	C	consensus_score=106.0	frequency=1	major_base=C	major_cov=18/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/21
RA	3138	.	1	228791	0	A	G	consensus_score=387.0	frequency=1	major_base=G	major_cov=69/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=69/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=69/64
RA	3139	.	1	229173	0	A	G	consensus_score=287.5	frequency=1	major_base=G	major_cov=46/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/47
RA	3140	.	1	232106	0	A	C	consensus_score=309.2	frequency=1	major_base=C	major_cov=55/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/50
RA	3141	.	1	234139	0	A	G	consensus_score=435.6	frequency=1	major_base=G	major_cov=75/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=75/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=75/66
RA	3142	.	1	236922	0	T	G	consensus_score=325.7	frequency=1	major_base=G	major_cov=64/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/44
RA	3143	.	1	238104	0	T	C	consensus_score=313.7	frequency=1	major_base=C	major_cov=39/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/62
RA	3144	.	1	238701	0	G	A	consensus_score=475.6	frequency=1	major_base=A	major_cov=76/88	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=76/88	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=76/88
RA	3145	.	1	241163	0	C	A	consensus_score=223.1	frequency=1	major_base=A	major_cov=12/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/65
RA	3146	.	1	241940	0	G	A	consensus_score=318.3	frequency=1	major_base=A	major_cov=65/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/47
RA	3147	.	1	242009	0	T	C	consensus_score=389.1	frequency=1	major_base=C	major_cov=79/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=79/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=79/52
RA	3148	.	1	242780	0	G	A	consensus_score=242.1	frequency=1	major_base=A	major_cov=46/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/39
RA	3149	.	1	242828	0	A	G	consensus_score=353.4	frequency=1	major_base=G	major_cov=66/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/56
RA	3150	.	1	243772	0	A	C	consensus_score=418.7	frequency=1	major_base=C	major_cov=68/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=68/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/67
RA	3151	.	1	245239	0	G	T	bias_e_value=1.00645e-05	bias_p_value=4.74698e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=214.2	fisher_strand_p_value=1.55685e-13	frequency=2.095e-01	ks_quality_p_value=1	major_base=G	major_cov=69/14	major_frequency=7.905e-01	minor_base=T	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.095e-01	polymorphism_score=16.1	prediction=polymorphism	ref_cov=69/14	total_cov=69/36
RA	3152	.	1	246460	0	G	A	consensus_score=336.9	frequency=1	major_base=A	major_cov=48/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/65
RA	3153	.	1	246791	0	C	T	consensus_score=243.7	frequency=1	major_base=T	major_cov=50/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/38
RA	3154	.	1	247087	0	T	G	consensus_score=288.4	frequency=1	major_base=G	major_cov=45/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/56
RA	3155	.	1	251039	0	T	C	consensus_score=290.2	frequency=1	major_base=C	major_cov=48/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/55
RA	3156	.	1	253117	0	A	G	consensus_score=260.9	frequency=1	major_base=G	major_cov=43/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/47
RA	3157	.	1	256229	0	C	T	consensus_score=241.8	frequency=1	major_base=T	major_cov=39/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/47
RA	3158	.	1	258328	0	G	A	bias_e_value=1971590	bias_p_value=0.92991	consensus_reject=FREQUENCY_CUTOFF	consensus_score=31.9	fisher_strand_p_value=0.780825	frequency=5.455e-01	ks_quality_p_value=0.832159	major_base=A	major_cov=52/62	major_frequency=5.455e-01	minor_base=G	minor_cov=46/49	new_cov=52/62	polymorphism_frequency=5.455e-01	polymorphism_score=210.4	prediction=polymorphism	ref_cov=46/49	total_cov=98/111
RA	3159	.	1	258349	0	G	A	bias_e_value=1012880	bias_p_value=0.47773	consensus_reject=FREQUENCY_CUTOFF	consensus_score=35.1	fisher_strand_p_value=0.432898	frequency=5.750e-01	ks_quality_p_value=0.401224	major_base=A	major_cov=69/69	major_frequency=5.750e-01	minor_base=G	minor_cov=57/45	new_cov=69/69	polymorphism_frequency=5.750e-01	polymorphism_score=241.1	prediction=polymorphism	ref_cov=57/45	total_cov=126/114
RA	3160	.	1	258442	0	C	T	bias_e_value=1125170	bias_p_value=0.530692	consensus_reject=FREQUENCY_CUTOFF	consensus_score=94.6	fisher_strand_p_value=0.662625	frequency=4.819e-01	ks_quality_p_value=0.310157	major_base=C	major_cov=55/45	major_frequency=5.181e-01	minor_base=T	minor_cov=55/38	new_cov=55/38	polymorphism_frequency=4.819e-01	polymorphism_score=205.4	prediction=polymorphism	ref_cov=55/45	total_cov=110/83
RA	3161	.	1	258984	0	G	A	bias_e_value=1911930	bias_p_value=0.901773	consensus_score=313.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.590891	major_base=A	major_cov=58/57	major_frequency=9.664e-01	minor_base=G	minor_cov=2/2	new_cov=58/57	polymorphism_frequency=9.664e-01	polymorphism_score=0.1	prediction=consensus	ref_cov=2/2	total_cov=60/60
RA	3162	.	1	259728	0	T	G	consensus_score=307.8	frequency=1	major_base=G	major_cov=54/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/47
RA	3163	.	1	259767	0	G	A	consensus_score=335.8	frequency=1	major_base=A	major_cov=63/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/50
RA	3164	.	1	260176	0	G	A	consensus_score=343.4	frequency=1	major_base=A	major_cov=64/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/50
RA	3165	.	1	261102	0	G	A	consensus_score=315.1	frequency=1	major_base=A	major_cov=55/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/55
RA	3166	.	1	264807	0	T	G	consensus_score=391.4	frequency=1	major_base=G	major_cov=66/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/62
RA	3167	.	1	265097	0	C	T	consensus_score=293.5	frequency=1	major_base=T	major_cov=42/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/56
RA	3168	.	1	265220	0	A	G	consensus_score=208.3	frequency=1	major_base=G	major_cov=29/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/43
RA	3169	.	1	265704	0	G	A	consensus_score=327.6	frequency=1	major_base=A	major_cov=61/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/51
RA	3170	.	1	265900	1	.	A	bias_e_value=364160	bias_p_value=0.171758	consensus_score=314.4	fisher_strand_p_value=0.0413967	frequency=1	ks_quality_p_value=0.988878	major_base=A	major_cov=59/46	major_frequency=9.633e-01	minor_base=.	minor_cov=0/4	new_cov=59/46	polymorphism_frequency=9.633e-01	polymorphism_score=4.6	prediction=consensus	ref_cov=0/4	total_cov=59/50
RA	3171	.	1	266401	0	T	C	consensus_score=359.9	frequency=1	major_base=C	major_cov=53/72	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/72	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/72
RA	3172	.	1	266785	0	C	T	consensus_score=371.9	frequency=1	major_base=T	major_cov=58/72	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/72	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/72
RA	3173	.	1	267452	0	C	T	consensus_score=431.5	frequency=1	major_base=T	major_cov=85/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=85/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=85/63
RA	3174	.	1	268001	0	T	C	consensus_score=330.4	frequency=1	major_base=C	major_cov=46/69	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/69	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/69
RA	3175	.	1	272762	0	C	T	consensus_score=403.0	frequency=1	major_base=T	major_cov=73/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=73/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=73/67
RA	3176	.	1	274607	0	G	T	consensus_score=246.4	frequency=1	major_base=T	major_cov=43/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/42
RA	3177	.	1	274810	0	C	A	consensus_score=320.3	frequency=1	major_base=A	major_cov=54/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/53
RA	3178	.	1	274948	0	T	G	consensus_score=350.7	frequency=1	major_base=G	major_cov=72/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=72/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=72/48
RA	3179	.	1	275145	0	A	C	bias_e_value=1.9413e-05	bias_p_value=9.15624e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=149.0	fisher_strand_p_value=3.07138e-13	frequency=2.841e-01	ks_quality_p_value=1	major_base=A	major_cov=12/51	major_frequency=7.159e-01	minor_base=C	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.841e-01	polymorphism_score=10.7	prediction=polymorphism	ref_cov=12/51	total_cov=37/52
RA	3180	.	1	275163	0	T	A	bias_e_value=0.000159891	bias_p_value=7.54133e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=140.1	fisher_strand_p_value=2.72971e-12	frequency=2.892e-01	ks_quality_p_value=1	major_base=T	major_cov=12/47	major_frequency=7.108e-01	minor_base=A	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.892e-01	polymorphism_score=17.2	prediction=polymorphism	ref_cov=12/47	total_cov=36/53
RA	3181	.	1	275171	0	G	A	bias_e_value=6.59135	bias_p_value=3.10884e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=132.8	fisher_strand_p_value=1.88602e-07	frequency=2.045e-01	ks_quality_p_value=1	major_base=G	major_cov=19/51	major_frequency=7.955e-01	minor_base=A	minor_cov=17/1	new_cov=17/1	polymorphism_frequency=2.045e-01	polymorphism_score=10.5	prediction=polymorphism	ref_cov=19/51	total_cov=37/52
RA	3182	.	1	275208	0	A	C	bias_e_value=1.99596	bias_p_value=9.41405e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=146.0	fisher_strand_p_value=5.30297e-08	frequency=2.674e-01	ks_quality_p_value=1	major_base=A	major_cov=43/20	major_frequency=7.326e-01	minor_base=C	minor_cov=1/22	new_cov=1/22	polymorphism_frequency=2.674e-01	polymorphism_score=11.3	prediction=polymorphism	ref_cov=43/20	total_cov=44/42
RA	3183	.	1	275282	0	A	C	bias_e_value=4.02052e-07	bias_p_value=1.8963e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=130.3	fisher_strand_p_value=5.60793e-15	frequency=3.407e-01	ks_quality_p_value=1	major_base=A	major_cov=51/9	major_frequency=6.593e-01	minor_base=C	minor_cov=1/30	new_cov=1/30	polymorphism_frequency=3.407e-01	polymorphism_score=19.5	prediction=polymorphism	ref_cov=51/9	total_cov=53/39
RA	3184	.	1	275326	0	A	G	consensus_score=248.6	frequency=1	major_base=G	major_cov=49/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/38
RA	3185	.	1	276075	0	T	A	bias_e_value=0.0913441	bias_p_value=4.30829e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=233.5	fisher_strand_p_value=2.05109e-09	frequency=2.000e-01	ks_quality_p_value=1	major_base=T	major_cov=66/26	major_frequency=8.000e-01	minor_base=A	minor_cov=1/22	new_cov=1/22	polymorphism_frequency=2.000e-01	polymorphism_score=17.4	prediction=polymorphism	ref_cov=66/26	total_cov=68/49
RA	3186	.	1	279050	0	C	T	consensus_score=319.3	frequency=1	major_base=T	major_cov=59/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/53
RA	3187	.	1	284050	0	A	C	consensus_score=442.6	frequency=1	major_base=C	major_cov=73/74	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=73/74	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=73/74
RA	3188	.	1	285385	0	T	C	consensus_score=305.6	frequency=1	major_base=C	major_cov=62/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/38
RA	3189	.	1	285653	0	G	T	consensus_score=241.5	frequency=1	major_base=T	major_cov=39/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/47
RA	3190	.	1	289575	0	A	G	bias_e_value=0.178597	bias_p_value=8.42359e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=125.5	fisher_strand_p_value=4.1495e-09	frequency=2.778e-01	ks_quality_p_value=1	major_base=A	major_cov=23/42	major_frequency=7.222e-01	minor_base=G	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.778e-01	polymorphism_score=15.4	prediction=polymorphism	ref_cov=23/42	total_cov=48/42
RA	3191	.	1	290327	0	A	G	consensus_score=314.0	frequency=1	major_base=G	major_cov=55/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/54
RA	3192	.	1	297899	0	A	C	consensus_score=249.8	frequency=1	major_base=C	major_cov=43/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/42
RA	3193	.	1	298277	0	C	T	consensus_score=188.3	frequency=1	major_base=T	major_cov=29/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/37
RA	3194	.	1	298439	0	C	T	consensus_score=296.8	frequency=1	major_base=T	major_cov=64/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/40
RA	3195	.	1	299654	0	C	A	consensus_score=316.5	frequency=1	major_base=A	major_cov=53/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/58
RA	3196	.	1	301432	0	A	C	bias_e_value=2120200	bias_p_value=1	consensus_score=209.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=29/44	major_frequency=9.865e-01	minor_base=A	minor_cov=0/1	new_cov=29/44	polymorphism_frequency=9.865e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=29/45
RA	3197	.	1	302388	0	G	A	bias_e_value=1678560	bias_p_value=0.791699	consensus_score=223.6	fisher_strand_p_value=0.428571	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=44/32	major_frequency=9.870e-01	minor_base=G	minor_cov=0/1	new_cov=44/32	polymorphism_frequency=9.870e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=44/33
RA	3198	.	1	302952	0	C	T	consensus_score=175.6	frequency=1	major_base=T	major_cov=30/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/32
RA	3199	.	1	303067	0	T	C	consensus_score=196.8	frequency=1	major_base=C	major_cov=27/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/38
RA	3200	.	1	303083	0	A	C	consensus_score=172.4	frequency=1	major_base=C	major_cov=25/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/36
RA	3201	.	1	304730	0	C	T	consensus_score=310.6	frequency=1	major_base=T	major_cov=50/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/59
RA	3202	.	1	304923	0	A	G	consensus_score=152.4	frequency=1	major_base=G	major_cov=20/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/33
RA	3203	.	1	305691	0	A	G	consensus_score=126.9	frequency=1	major_base=G	major_cov=23/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/23
RA	3204	.	1	308365	0	T	C	consensus_score=157.3	frequency=1	major_base=C	major_cov=33/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/24
RA	3205	.	1	308689	0	C	T	consensus_score=236.5	frequency=1	major_base=T	major_cov=28/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/55
RA	3206	.	1	311866	0	C	A	bias_e_value=1.98353e-06	bias_p_value=9.35543e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=211.0	fisher_strand_p_value=2.90824e-14	frequency=2.602e-01	ks_quality_p_value=1	major_base=C	major_cov=25/66	major_frequency=7.398e-01	minor_base=A	minor_cov=32/0	new_cov=32/0	polymorphism_frequency=2.602e-01	polymorphism_score=24.9	prediction=polymorphism	ref_cov=25/66	total_cov=57/66
RA	3207	.	1	311890	0	T	A	bias_e_value=0.000580973	bias_p_value=2.74019e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=233.5	fisher_strand_p_value=1.04242e-11	frequency=2.203e-01	ks_quality_p_value=1	major_base=T	major_cov=27/65	major_frequency=7.797e-01	minor_base=A	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=2.203e-01	polymorphism_score=14.9	prediction=polymorphism	ref_cov=27/65	total_cov=53/65
RA	3208	.	1	312173	0	A	G	bias_e_value=1.75739	bias_p_value=8.28881e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=98.2	fisher_strand_p_value=4.63391e-08	frequency=2.459e-01	ks_quality_p_value=1	major_base=A	major_cov=10/36	major_frequency=7.541e-01	minor_base=G	minor_cov=15/0	new_cov=15/0	polymorphism_frequency=2.459e-01	polymorphism_score=10.2	prediction=polymorphism	ref_cov=10/36	total_cov=26/36
RA	3209	.	1	312188	0	C	G	bias_e_value=0.0811079	bias_p_value=3.82549e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=110.5	fisher_strand_p_value=1.81048e-09	frequency=2.857e-01	ks_quality_p_value=1	major_base=C	major_cov=9/36	major_frequency=7.143e-01	minor_base=G	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.857e-01	polymorphism_score=11.8	prediction=polymorphism	ref_cov=9/36	total_cov=27/36
RA	3210	.	1	312416	0	G	A	consensus_score=304.6	frequency=1	major_base=A	major_cov=60/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/46
RA	3211	.	1	314083	0	G	A	consensus_score=329.2	frequency=1	major_base=A	major_cov=53/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/61
RA	3212	.	1	314728	0	A	G	consensus_score=347.2	frequency=1	major_base=G	major_cov=61/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/58
RA	3213	.	1	315161	0	G	A	consensus_score=322.2	frequency=1	major_base=A	major_cov=52/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/57
RA	3214	.	1	315300	0	A	G	consensus_score=318.0	frequency=1	major_base=G	major_cov=54/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/55
RA	3215	.	1	319736	0	A	C	consensus_score=203.4	frequency=1	major_base=C	major_cov=42/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/28
RA	3216	.	1	320117	0	C	A	consensus_score=220.8	frequency=1	major_base=A	major_cov=49/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/29
RA	3217	.	1	323699	0	A	G	consensus_score=243.4	frequency=1	major_base=G	major_cov=48/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/36
RA	3218	.	1	324799	0	A	G	consensus_score=217.9	frequency=1	major_base=G	major_cov=29/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/45
RA	3219	.	1	325331	0	C	T	consensus_score=228.3	frequency=1	major_base=T	major_cov=43/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/37
RA	3220	.	1	325880	0	C	T	consensus_score=287.4	frequency=1	major_base=T	major_cov=48/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/53
RA	3221	.	1	326540	0	A	G	consensus_score=374.7	frequency=1	major_base=G	major_cov=62/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/60
RA	3222	.	1	326881	0	T	C	consensus_score=350.3	frequency=1	major_base=C	major_cov=66/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/54
RA	3223	.	1	327421	0	A	G	consensus_score=218.4	frequency=1	major_base=G	major_cov=48/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/29
RA	3224	.	1	327423	0	T	G	consensus_score=214.3	frequency=1	major_base=G	major_cov=48/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/28
RA	3225	.	1	327934	0	C	T	consensus_score=210.3	frequency=1	major_base=T	major_cov=40/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/31
RA	3226	.	1	328359	0	T	A	bias_e_value=6.72829e-05	bias_p_value=3.17343e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=154.0	fisher_strand_p_value=1.11253e-12	frequency=2.603e-01	ks_quality_p_value=1	major_base=T	major_cov=48/6	major_frequency=7.397e-01	minor_base=A	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=2.603e-01	polymorphism_score=17.8	prediction=polymorphism	ref_cov=48/6	total_cov=48/25
RA	3227	.	1	328405	0	A	T	bias_e_value=1.87477e-05	bias_p_value=8.84243e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=153.5	fisher_strand_p_value=2.96253e-13	frequency=2.727e-01	ks_quality_p_value=1	major_base=A	major_cov=49/7	major_frequency=7.273e-01	minor_base=T	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=2.727e-01	polymorphism_score=11.2	prediction=polymorphism	ref_cov=49/7	total_cov=49/28
RA	3228	.	1	330762	0	G	A	consensus_score=264.8	frequency=1	major_base=A	major_cov=44/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/48
RA	3229	.	1	333143	0	G	A	consensus_score=282.2	frequency=1	major_base=A	major_cov=50/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/44
RA	3230	.	1	333818	0	A	G	consensus_score=291.7	frequency=1	major_base=G	major_cov=59/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/42
RA	3231	.	1	334758	0	C	G	consensus_score=273.3	frequency=1	major_base=G	major_cov=52/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/43
RA	3232	.	1	336332	0	C	T	consensus_score=282.3	frequency=1	major_base=T	major_cov=44/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/51
RA	3233	.	1	337349	0	T	C	consensus_score=282.1	frequency=1	major_base=C	major_cov=38/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/61
RA	3234	.	1	338071	0	C	A	consensus_score=410.8	frequency=1	major_base=A	major_cov=76/68	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=76/68	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=76/68
RA	3235	.	1	338621	0	C	A	consensus_score=316.2	frequency=1	major_base=A	major_cov=62/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/45
RA	3236	.	1	339829	0	T	C	consensus_score=331.9	frequency=1	major_base=C	major_cov=73/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=73/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=73/39
RA	3237	.	1	340394	0	T	C	consensus_score=337.5	frequency=1	major_base=C	major_cov=51/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/60
RA	3238	.	1	340693	0	G	A	consensus_score=314.7	frequency=1	major_base=A	major_cov=46/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/63
RA	3239	.	1	342956	0	A	G	consensus_score=394.6	frequency=1	major_base=G	major_cov=69/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=69/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=69/60
RA	3240	.	1	344218	0	T	C	consensus_score=336.7	frequency=1	major_base=C	major_cov=51/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/59
RA	3241	.	1	345968	0	T	C	consensus_score=226.4	frequency=1	major_base=C	major_cov=30/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/49
RA	3242	.	1	346059	0	C	T	consensus_score=268.7	frequency=1	major_base=T	major_cov=50/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/44
RA	3243	.	1	348069	0	T	G	consensus_score=346.4	frequency=1	major_base=G	major_cov=57/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/62
RA	3244	.	1	348593	0	A	G	consensus_score=293.3	frequency=1	major_base=G	major_cov=39/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/59
RA	3245	.	1	350995	0	G	A	consensus_score=336.1	frequency=1	major_base=A	major_cov=49/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/65
RA	3246	.	1	353636	0	A	G	consensus_score=317.9	frequency=1	major_base=G	major_cov=46/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/61
RA	3247	.	1	357942	0	C	T	consensus_score=219.1	frequency=1	major_base=T	major_cov=29/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/49
RA	3248	.	1	360839	0	T	C	consensus_score=394.4	frequency=1	major_base=C	major_cov=67/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=67/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/65
RA	3249	.	1	362692	0	A	C	consensus_score=239.3	frequency=1	major_base=C	major_cov=40/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/39
RA	3250	.	1	365275	0	A	G	consensus_score=303.8	frequency=1	major_base=G	major_cov=52/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/53
RA	3251	.	1	365539	0	T	C	consensus_score=393.8	frequency=1	major_base=C	major_cov=57/73	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/73	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/73
RA	3252	.	1	367037	0	C	A	consensus_score=266.0	frequency=1	major_base=A	major_cov=30/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/61
RA	3253	.	1	370771	0	G	A	consensus_score=298.4	frequency=1	major_base=A	major_cov=45/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/59
RA	3254	.	1	376427	0	G	A	consensus_score=265.6	frequency=1	major_base=A	major_cov=50/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/42
RA	3255	.	1	378018	0	A	G	consensus_score=286.6	frequency=1	major_base=G	major_cov=51/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/47
RA	3256	.	1	378171	0	G	A	consensus_score=230.3	frequency=1	major_base=A	major_cov=48/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/35
RA	3257	.	1	379080	0	G	T	consensus_score=356.8	frequency=1	major_base=T	major_cov=51/69	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/69	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/69
RA	3258	.	1	380111	0	C	T	consensus_score=315.9	frequency=1	major_base=T	major_cov=50/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/57
RA	3259	.	1	380885	0	T	.	consensus_score=31.5	deleted=1	frequency=1	major_base=.	major_cov=4/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/11
RA	3260	.	1	380886	0	T	.	consensus_score=31.5	deleted=1	frequency=1	major_base=.	major_cov=4/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/11
RA	3261	.	1	380918	0	A	G	consensus_score=110.4	frequency=1	major_base=G	major_cov=11/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/33
RA	3262	.	1	380926	0	G	A	consensus_score=117.4	frequency=1	major_base=A	major_cov=13/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/35
RA	3263	.	1	380932	0	T	C	consensus_score=126.0	frequency=1	major_base=C	major_cov=13/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/35
RA	3264	.	1	380935	0	T	.	consensus_score=168.5	frequency=1	major_base=.	major_cov=13/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/35
RA	3265	.	1	382113	0	A	G	consensus_score=258.7	frequency=1	major_base=G	major_cov=48/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/42
RA	3266	.	1	386488	0	G	A	consensus_score=277.3	frequency=1	major_base=A	major_cov=47/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/51
RA	3267	.	1	387225	0	C	T	consensus_score=257.7	frequency=1	major_base=T	major_cov=47/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/42
RA	3268	.	1	387463	0	G	A	consensus_score=263.0	frequency=1	major_base=A	major_cov=48/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/44
RA	3269	.	1	388610	0	T	C	bias_e_value=1.023e-10	bias_p_value=4.82505e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=179.1	fisher_strand_p_value=1.14026e-18	frequency=2.816e-01	ks_quality_p_value=1	major_base=T	major_cov=8/66	major_frequency=7.184e-01	minor_base=C	minor_cov=29/0	new_cov=29/0	polymorphism_frequency=2.816e-01	polymorphism_score=14.8	prediction=polymorphism	ref_cov=8/66	total_cov=37/66
RA	3270	.	1	391377	0	A	G	consensus_score=267.5	frequency=1	major_base=G	major_cov=46/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/46
RA	3271	.	1	394991	0	A	G	consensus_score=238.6	frequency=1	major_base=G	major_cov=36/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/48
RA	3272	.	1	399027	0	A	G	consensus_score=288.8	frequency=1	major_base=G	major_cov=47/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/52
RA	3273	.	1	405764	0	A	C	bias_e_value=5.71678e-07	bias_p_value=2.69634e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=241.4	fisher_strand_p_value=8.06038e-15	frequency=3.252e-01	ks_quality_p_value=1	major_base=A	major_cov=57/26	major_frequency=6.748e-01	minor_base=C	minor_cov=0/40	new_cov=0/40	polymorphism_frequency=3.252e-01	polymorphism_score=11.3	prediction=polymorphism	ref_cov=57/26	total_cov=57/66
RA	3274	.	1	405827	0	A	C	bias_e_value=6.1438e-06	bias_p_value=2.89775e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=221.8	fisher_strand_p_value=9.34725e-14	frequency=2.683e-01	ks_quality_p_value=1	major_base=A	major_cov=63/27	major_frequency=7.317e-01	minor_base=C	minor_cov=0/33	new_cov=0/33	polymorphism_frequency=2.683e-01	polymorphism_score=17.9	prediction=polymorphism	ref_cov=63/27	total_cov=63/60
RA	3275	.	1	406112	0	C	T	consensus_score=255.5	frequency=1	major_base=T	major_cov=50/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/40
RA	3276	.	1	406990	0	A	C	bias_e_value=1825220	bias_p_value=0.860872	consensus_score=253.1	fisher_strand_p_value=0.521272	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=37/57	major_frequency=9.792e-01	minor_base=A	minor_cov=0/2	new_cov=37/57	polymorphism_frequency=9.792e-01	polymorphism_score=-5.8	prediction=consensus	ref_cov=0/2	total_cov=37/59
RA	3277	.	1	407362	0	A	G	consensus_score=272.5	frequency=1	major_base=G	major_cov=46/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/47
RA	3278	.	1	407535	0	A	G	consensus_score=324.4	frequency=1	major_base=G	major_cov=65/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/42
RA	3279	.	1	407787	0	C	T	consensus_score=301.9	frequency=1	major_base=T	major_cov=51/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/56
RA	3280	.	1	409127	0	C	T	consensus_score=308.8	frequency=1	major_base=T	major_cov=52/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/55
RA	3281	.	1	411173	0	A	G	consensus_score=266.0	frequency=1	major_base=G	major_cov=46/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/42
RA	3282	.	1	411661	0	C	A	bias_e_value=0.0742867	bias_p_value=3.50377e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=177.5	fisher_strand_p_value=1.65102e-09	frequency=2.174e-01	ks_quality_p_value=1	major_base=C	major_cov=20/52	major_frequency=7.826e-01	minor_base=A	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.174e-01	polymorphism_score=13.1	prediction=polymorphism	ref_cov=20/52	total_cov=40/52
RA	3283	.	1	411686	0	T	A	bias_e_value=0.000735547	bias_p_value=3.46924e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=193.6	fisher_strand_p_value=1.33219e-11	frequency=2.418e-01	ks_quality_p_value=1	major_base=T	major_cov=15/54	major_frequency=7.582e-01	minor_base=A	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.418e-01	polymorphism_score=11.0	prediction=polymorphism	ref_cov=15/54	total_cov=37/54
RA	3284	.	1	411697	0	G	A	bias_e_value=5.88008e-12	bias_p_value=2.77337e-18	consensus_reject=FREQUENCY_CUTOFF	consensus_score=101.5	fisher_strand_p_value=6.13055e-20	frequency=3.483e-01	ks_quality_p_value=1	major_base=G	major_cov=4/54	major_frequency=6.517e-01	minor_base=A	minor_cov=31/0	new_cov=31/0	polymorphism_frequency=3.483e-01	polymorphism_score=31.4	prediction=polymorphism	ref_cov=4/54	total_cov=36/54
RA	3285	.	1	411719	0	T	A	bias_e_value=8.25619e-05	bias_p_value=3.89407e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=209.0	fisher_strand_p_value=1.3754e-12	frequency=2.371e-01	ks_quality_p_value=1	major_base=T	major_cov=15/59	major_frequency=7.629e-01	minor_base=A	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.371e-01	polymorphism_score=10.7	prediction=polymorphism	ref_cov=15/59	total_cov=38/59
RA	3286	.	1	412152	0	G	A	consensus_score=218.6	frequency=1	major_base=A	major_cov=34/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/41
RA	3287	.	1	413364	0	T	C	consensus_score=247.1	frequency=1	major_base=C	major_cov=35/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/48
RA	3288	.	1	413568	0	A	G	consensus_score=284.9	frequency=1	major_base=G	major_cov=53/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/46
RA	3289	.	1	413649	0	C	A	consensus_score=276.1	frequency=1	major_base=A	major_cov=48/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/47
RA	3290	.	1	415053	0	T	G	consensus_score=196.5	frequency=1	major_base=G	major_cov=33/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/35
RA	3291	.	1	415113	0	T	.	consensus_score=174.0	frequency=1	major_base=.	major_cov=21/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/21
RA	3292	.	1	415699	0	G	C	consensus_score=251.5	frequency=1	major_base=C	major_cov=46/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/38
RA	3293	.	1	416780	0	G	T	consensus_score=326.7	frequency=1	major_base=T	major_cov=54/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/58
RA	3294	.	1	418667	0	G	T	consensus_score=324.8	frequency=1	major_base=T	major_cov=56/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/58
RA	3295	.	1	419104	0	A	G	bias_e_value=2120200	bias_p_value=1	consensus_score=352.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=57/57	major_frequency=9.913e-01	minor_base=T	minor_cov=0/1	new_cov=57/57	polymorphism_frequency=9.913e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/58
RA	3296	.	1	419794	0	G	A	bias_e_value=0.0119405	bias_p_value=5.6318e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=154.8	fisher_strand_p_value=2.43419e-10	frequency=2.198e-01	ks_quality_p_value=1	major_base=G	major_cov=54/17	major_frequency=7.802e-01	minor_base=A	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.198e-01	polymorphism_score=10.3	prediction=polymorphism	ref_cov=54/17	total_cov=54/37
RA	3297	.	1	419845	0	T	C	bias_e_value=1.34877e-08	bias_p_value=6.36156e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=127.1	fisher_strand_p_value=1.70516e-16	frequency=2.874e-01	ks_quality_p_value=1	major_base=T	major_cov=56/6	major_frequency=7.126e-01	minor_base=C	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.874e-01	polymorphism_score=19.9	prediction=polymorphism	ref_cov=56/6	total_cov=56/31
RA	3298	.	1	421036	0	A	G	consensus_score=307.5	frequency=1	major_base=G	major_cov=63/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/44
RA	3299	.	1	422112	0	T	C	consensus_score=302.3	frequency=1	major_base=C	major_cov=62/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/41
RA	3300	.	1	422304	0	T	G	bias_e_value=1751580	bias_p_value=0.82614	consensus_score=301.1	fisher_strand_p_value=0.471698	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=56/49	major_frequency=9.906e-01	minor_base=A	minor_cov=0/1	new_cov=56/49	polymorphism_frequency=9.906e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/50
RA	3301	.	1	425565	0	T	G	consensus_score=250.9	frequency=1	major_base=G	major_cov=32/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/53
RA	3302	.	1	427503	0	C	T	consensus_score=363.0	frequency=1	major_base=T	major_cov=60/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/62
RA	3303	.	1	429580	0	C	A	consensus_score=345.4	frequency=1	major_base=A	major_cov=54/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/62
RA	3304	.	1	433279	0	A	G	consensus_score=423.9	frequency=1	major_base=G	major_cov=77/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=77/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=77/67
RA	3305	.	1	434229	0	T	G	consensus_score=306.4	frequency=1	major_base=G	major_cov=53/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/49
RA	3306	.	1	436586	0	G	T	consensus_score=365.0	frequency=1	major_base=T	major_cov=62/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/66
RA	3307	.	1	437161	0	A	G	consensus_score=365.1	frequency=1	major_base=G	major_cov=56/70	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/70	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/70
RA	3308	.	1	437752	0	A	G	consensus_score=446.3	frequency=1	major_base=G	major_cov=78/78	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=78/78	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=78/78
RA	3309	.	1	439231	0	G	T	consensus_score=325.4	frequency=1	major_base=T	major_cov=56/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/58
RA	3310	.	1	439587	0	A	G	bias_e_value=432219	bias_p_value=0.203858	consensus_score=80.6	fisher_strand_p_value=0.0513652	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=11/25	major_frequency=8.780e-01	minor_base=A	minor_cov=4/1	new_cov=11/25	polymorphism_frequency=8.780e-01	polymorphism_score=2.9	prediction=consensus	ref_cov=4/1	total_cov=15/26
RA	3311	.	1	439644	0	T	G	consensus_score=49.4	deleted=1	frequency=1	major_base=G	major_cov=6/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/15
RA	3312	.	1	439670	0	A	.	consensus_score=49.2	deleted=1	frequency=1	major_base=.	major_cov=4/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/12
RA	3313	.	1	446594	0	C	A	consensus_score=336.0	frequency=1	major_base=A	major_cov=55/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/57
RA	3314	.	1	449161	0	G	A	consensus_score=262.8	frequency=1	major_base=A	major_cov=45/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/47
RA	3315	.	1	450857	0	T	G	consensus_score=239.6	frequency=1	major_base=G	major_cov=42/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/41
RA	3316	.	1	451549	0	A	G	consensus_score=269.5	frequency=1	major_base=G	major_cov=49/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/46
RA	3317	.	1	451719	0	A	G	consensus_score=185.8	frequency=1	major_base=G	major_cov=44/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/27
RA	3318	.	1	456963	0	A	.	bias_e_value=2120180	bias_p_value=0.999992	consensus_score=559.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.996028	major_base=.	major_cov=67/67	major_frequency=9.926e-01	minor_base=A	minor_cov=1/0	new_cov=67/67	polymorphism_frequency=9.926e-01	polymorphism_score=-3.5	prediction=consensus	ref_cov=1/0	total_cov=68/67
RA	3319	.	1	457258	0	T	A	consensus_score=282.9	frequency=1	major_base=A	major_cov=42/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/57
RA	3320	.	1	457281	0	C	T	consensus_score=255.7	frequency=1	major_base=T	major_cov=35/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/56
RA	3321	.	1	457296	0	A	G	consensus_score=270.6	frequency=1	major_base=G	major_cov=36/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/53
RA	3322	.	1	457304	0	C	T	consensus_score=223.1	frequency=1	major_base=T	major_cov=30/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/49
RA	3323	.	1	457305	0	C	T	consensus_score=223.1	frequency=1	major_base=T	major_cov=30/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/49
RA	3324	.	1	457306	0	C	T	consensus_score=223.5	frequency=1	major_base=T	major_cov=30/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/49
RA	3325	.	1	457313	0	T	.	consensus_score=338.2	frequency=1	major_base=.	major_cov=31/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/48
RA	3326	.	1	457337	0	C	T	consensus_score=206.0	frequency=1	major_base=T	major_cov=32/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/41
RA	3327	.	1	457406	0	A	G	consensus_score=263.1	frequency=1	major_base=G	major_cov=49/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/42
RA	3328	.	1	457418	0	T	C	consensus_score=258.0	frequency=1	major_base=C	major_cov=44/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/41
RA	3329	.	1	457420	0	G	A	consensus_score=240.9	frequency=1	major_base=A	major_cov=44/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/41
RA	3330	.	1	457421	0	C	T	consensus_score=238.1	frequency=1	major_base=T	major_cov=44/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/41
RA	3331	.	1	457436	0	A	C	consensus_score=296.4	frequency=1	major_base=C	major_cov=53/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/44
RA	3332	.	1	457441	0	A	G	consensus_score=291.5	frequency=1	major_base=G	major_cov=53/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/44
RA	3333	.	1	457444	0	G	T	consensus_score=278.1	frequency=1	major_base=T	major_cov=53/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/44
RA	3334	.	1	457449	0	C	T	consensus_score=273.9	frequency=1	major_base=T	major_cov=53/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/43
RA	3335	.	1	457450	0	G	C	consensus_score=294.0	frequency=1	major_base=C	major_cov=53/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/43
RA	3336	.	1	457523	0	T	C	consensus_score=280.5	frequency=1	major_base=C	major_cov=53/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/39
RA	3337	.	1	457524	0	G	A	consensus_score=259.0	frequency=1	major_base=A	major_cov=53/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/39
RA	3338	.	1	457528	0	A	C	consensus_score=283.5	frequency=1	major_base=C	major_cov=53/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/39
RA	3339	.	1	457529	0	G	T	consensus_score=273.9	frequency=1	major_base=T	major_cov=53/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/39
RA	3340	.	1	457547	0	T	C	consensus_score=288.4	frequency=1	major_base=C	major_cov=48/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/49
RA	3341	.	1	457578	0	T	C	consensus_score=305.5	frequency=1	major_base=C	major_cov=44/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/57
RA	3342	.	1	457584	0	T	C	bias_e_value=2117110	bias_p_value=0.998543	consensus_score=271.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.946501	major_base=C	major_cov=39/57	major_frequency=9.897e-01	minor_base=T	minor_cov=0/1	new_cov=39/57	polymorphism_frequency=9.897e-01	polymorphism_score=-4.9	prediction=consensus	ref_cov=0/1	total_cov=39/58
RA	3343	.	1	457644	0	G	A	bias_e_value=2120200	bias_p_value=1	consensus_score=236.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=30/54	major_frequency=9.882e-01	minor_base=G	minor_cov=0/1	new_cov=30/54	polymorphism_frequency=9.882e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=30/55
RA	3344	.	1	460501	0	G	A	consensus_score=323.5	frequency=1	major_base=A	major_cov=53/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/62
RA	3345	.	1	460760	0	G	A	consensus_score=435.4	frequency=1	major_base=A	major_cov=77/71	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=77/71	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=77/71
RA	3346	.	1	462443	0	A	G	consensus_score=453.1	frequency=1	major_base=G	major_cov=77/71	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=77/71	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=77/71
RA	3347	.	1	462643	0	G	A	consensus_score=303.8	frequency=1	major_base=A	major_cov=55/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/59
RA	3348	.	1	462757	0	G	C	bias_e_value=347488	bias_p_value=0.163894	consensus_score=329.8	fisher_strand_p_value=0.0384988	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=50/66	major_frequency=9.667e-01	minor_base=G	minor_cov=4/0	new_cov=50/66	polymorphism_frequency=9.667e-01	polymorphism_score=-2.4	prediction=consensus	ref_cov=4/0	total_cov=54/66
RA	3349	.	1	463862	0	G	A	bias_e_value=146948	bias_p_value=0.0693087	consensus_score=472.0	fisher_strand_p_value=0.012966	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=93/84	major_frequency=9.672e-01	minor_base=C	minor_cov=0/6	new_cov=93/84	polymorphism_frequency=9.672e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=93/91
RA	3350	.	1	463924	0	T	C	consensus_score=520.7	frequency=1	major_base=C	major_cov=90/87	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=90/87	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=90/87
RA	3351	.	1	466270	0	G	A	consensus_score=433.3	frequency=1	major_base=A	major_cov=65/82	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/82	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/82
RA	3352	.	1	466866	0	A	G	consensus_score=429.8	frequency=1	major_base=G	major_cov=67/74	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=67/74	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/74
RA	3353	.	1	470245	0	G	A	consensus_score=324.2	frequency=1	major_base=A	major_cov=51/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/62
RA	3354	.	1	472051	0	A	G	consensus_score=392.4	frequency=1	major_base=G	major_cov=66/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/64
RA	3355	.	1	472961	0	T	C	consensus_score=291.8	frequency=1	major_base=C	major_cov=42/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/54
RA	3356	.	1	473216	0	G	A	consensus_score=182.3	frequency=1	major_base=A	major_cov=35/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/30
RA	3357	.	1	473258	0	A	G	consensus_score=240.6	frequency=1	major_base=G	major_cov=48/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/36
RA	3358	.	1	473371	0	T	C	consensus_score=320.3	frequency=1	major_base=C	major_cov=64/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/44
RA	3359	.	1	477266	0	C	T	consensus_score=253.7	frequency=1	major_base=T	major_cov=37/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/52
RA	3360	.	1	477568	0	C	T	consensus_score=294.6	frequency=1	major_base=T	major_cov=70/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=70/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=70/32
RA	3361	.	1	477618	0	T	C	consensus_score=346.5	frequency=1	major_base=C	major_cov=73/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=73/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=73/45
RA	3362	.	1	477682	0	G	A	bias_e_value=274675	bias_p_value=0.129552	consensus_score=287.3	fisher_strand_p_value=0.0284025	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=52/52	major_frequency=9.455e-01	minor_base=C	minor_cov=0/6	new_cov=52/52	polymorphism_frequency=9.455e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/58
RA	3363	.	1	477687	0	A	G	bias_e_value=2120190	bias_p_value=1	consensus_score=313.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999842	major_base=G	major_cov=52/60	major_frequency=9.912e-01	minor_base=A	minor_cov=0/1	new_cov=52/60	polymorphism_frequency=9.912e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=52/61
RA	3364	.	1	478400	0	A	G	consensus_score=313.3	frequency=1	major_base=G	major_cov=47/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/61
RA	3365	.	1	478456	0	T	C	consensus_score=248.7	frequency=1	major_base=C	major_cov=34/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/52
RA	3366	.	1	478759	0	T	C	consensus_score=228.2	frequency=1	major_base=C	major_cov=34/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/41
RA	3367	.	1	478823	0	G	T	consensus_score=199.0	frequency=1	major_base=T	major_cov=29/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/39
RA	3368	.	1	479066	0	A	T	bias_e_value=0.0434888	bias_p_value=2.05117e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=181.9	fisher_strand_p_value=9.41619e-10	frequency=2.317e-01	ks_quality_p_value=1	major_base=A	major_cov=15/48	major_frequency=7.683e-01	minor_base=T	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.317e-01	polymorphism_score=15.3	prediction=polymorphism	ref_cov=15/48	total_cov=34/48
RA	3369	.	1	479957	0	G	T	consensus_score=206.8	frequency=1	major_base=T	major_cov=32/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/38
RA	3370	.	1	480145	0	A	G	consensus_score=165.7	frequency=1	major_base=G	major_cov=30/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/25
RA	3371	.	1	480159	0	A	G	consensus_score=170.8	frequency=1	major_base=G	major_cov=31/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/28
RA	3372	.	1	481331	0	A	G	consensus_score=105.6	frequency=1	major_base=G	major_cov=32/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/11
RA	3373	.	1	483992	0	A	G	consensus_score=292.6	frequency=1	major_base=G	major_cov=49/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/52
RA	3374	.	1	485005	0	G	A	consensus_score=89.2	frequency=1	major_base=A	major_cov=16/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/17
RA	3375	.	1	485686	0	C	T	consensus_score=240.7	frequency=1	major_base=T	major_cov=46/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/39
RA	3376	.	1	486211	0	T	C	consensus_score=245.0	frequency=1	major_base=C	major_cov=43/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/41
RA	3377	.	1	486482	1	.	T	bias_e_value=1886830	bias_p_value=0.889932	consensus_reject=FREQUENCY_CUTOFF	consensus_score=23.2	fisher_strand_p_value=0.608392	frequency=6.667e-01	ks_quality_p_value=0.935507	major_base=T	major_cov=4/6	major_frequency=6.667e-01	minor_base=.	minor_cov=3/2	new_cov=4/6	polymorphism_frequency=6.667e-01	polymorphism_score=12.8	prediction=polymorphism	ref_cov=3/2	total_cov=7/8
RA	3378	.	1	486482	2	.	A	bias_e_value=1930910	bias_p_value=0.910724	consensus_reject=FREQUENCY_CUTOFF	consensus_score=24.6	fisher_strand_p_value=0.608392	frequency=6.667e-01	ks_quality_p_value=1	major_base=A	major_cov=4/6	major_frequency=6.667e-01	minor_base=.	minor_cov=3/2	new_cov=4/6	polymorphism_frequency=6.667e-01	polymorphism_score=12.6	prediction=polymorphism	ref_cov=3/2	total_cov=7/8
RA	3379	.	1	486482	3	.	A	bias_e_value=1886830	bias_p_value=0.889932	consensus_reject=FREQUENCY_CUTOFF	consensus_score=23.0	fisher_strand_p_value=0.608392	frequency=6.667e-01	ks_quality_p_value=0.935507	major_base=A	major_cov=4/6	major_frequency=6.667e-01	minor_base=.	minor_cov=3/2	new_cov=4/6	polymorphism_frequency=6.667e-01	polymorphism_score=12.6	prediction=polymorphism	ref_cov=3/2	total_cov=7/8
RA	3380	.	1	486482	4	.	T	bias_e_value=1886830	bias_p_value=0.889932	consensus_reject=FREQUENCY_CUTOFF	consensus_score=25.0	fisher_strand_p_value=0.608392	frequency=6.667e-01	ks_quality_p_value=0.935507	major_base=T	major_cov=4/6	major_frequency=6.667e-01	minor_base=.	minor_cov=3/2	new_cov=4/6	polymorphism_frequency=6.667e-01	polymorphism_score=12.8	prediction=polymorphism	ref_cov=3/2	total_cov=7/8
RA	3381	.	1	486482	5	.	T	bias_e_value=1886830	bias_p_value=0.889932	consensus_reject=FREQUENCY_CUTOFF	consensus_score=24.4	fisher_strand_p_value=0.608392	frequency=6.667e-01	ks_quality_p_value=0.935507	major_base=T	major_cov=4/6	major_frequency=6.667e-01	minor_base=.	minor_cov=3/2	new_cov=4/6	polymorphism_frequency=6.667e-01	polymorphism_score=12.8	prediction=polymorphism	ref_cov=3/2	total_cov=7/8
RA	3382	.	1	486482	6	.	A	bias_e_value=1930910	bias_p_value=0.910724	consensus_reject=FREQUENCY_CUTOFF	consensus_score=24.9	fisher_strand_p_value=0.608392	frequency=6.667e-01	ks_quality_p_value=1	major_base=A	major_cov=4/6	major_frequency=6.667e-01	minor_base=.	minor_cov=3/2	new_cov=4/6	polymorphism_frequency=6.667e-01	polymorphism_score=12.6	prediction=polymorphism	ref_cov=3/2	total_cov=7/8
RA	3383	.	1	486482	7	.	G	bias_e_value=1930910	bias_p_value=0.910724	consensus_reject=FREQUENCY_CUTOFF	consensus_score=23.5	fisher_strand_p_value=0.608392	frequency=6.667e-01	ks_quality_p_value=1	major_base=G	major_cov=4/6	major_frequency=6.667e-01	minor_base=.	minor_cov=3/2	new_cov=4/6	polymorphism_frequency=6.667e-01	polymorphism_score=14.6	prediction=polymorphism	ref_cov=3/2	total_cov=7/8
RA	3384	.	1	486482	8	.	C	bias_e_value=1886830	bias_p_value=0.889932	consensus_reject=FREQUENCY_CUTOFF	consensus_score=23.7	fisher_strand_p_value=0.608392	frequency=6.667e-01	ks_quality_p_value=0.935507	major_base=C	major_cov=4/6	major_frequency=6.667e-01	minor_base=.	minor_cov=3/2	new_cov=4/6	polymorphism_frequency=6.667e-01	polymorphism_score=14.8	prediction=polymorphism	ref_cov=3/2	total_cov=7/8
RA	3385	.	1	486482	9	.	A	bias_e_value=1930910	bias_p_value=0.910724	consensus_reject=FREQUENCY_CUTOFF	consensus_score=24.5	fisher_strand_p_value=0.608392	frequency=6.667e-01	ks_quality_p_value=1	major_base=A	major_cov=4/6	major_frequency=6.667e-01	minor_base=.	minor_cov=3/2	new_cov=4/6	polymorphism_frequency=6.667e-01	polymorphism_score=12.6	prediction=polymorphism	ref_cov=3/2	total_cov=7/8
RA	3386	.	1	486482	10	.	G	bias_e_value=1930910	bias_p_value=0.910724	consensus_reject=FREQUENCY_CUTOFF	consensus_score=23.5	fisher_strand_p_value=0.608392	frequency=6.667e-01	ks_quality_p_value=1	major_base=G	major_cov=4/6	major_frequency=6.667e-01	minor_base=.	minor_cov=3/2	new_cov=4/6	polymorphism_frequency=6.667e-01	polymorphism_score=14.6	prediction=polymorphism	ref_cov=3/2	total_cov=7/8
RA	3387	.	1	486482	11	.	A	bias_e_value=1930910	bias_p_value=0.910724	consensus_reject=FREQUENCY_CUTOFF	consensus_score=24.5	fisher_strand_p_value=0.608392	frequency=6.667e-01	ks_quality_p_value=1	major_base=A	major_cov=4/6	major_frequency=6.667e-01	minor_base=.	minor_cov=3/2	new_cov=4/6	polymorphism_frequency=6.667e-01	polymorphism_score=12.6	prediction=polymorphism	ref_cov=3/2	total_cov=7/8
RA	3388	.	1	487589	0	G	C	consensus_score=89.8	frequency=1	major_base=C	major_cov=21/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/12
RA	3389	.	1	488032	0	C	T	consensus_score=253.6	frequency=1	major_base=T	major_cov=46/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/47
RA	3390	.	1	488436	0	T	A	bias_e_value=2120190	bias_p_value=1	consensus_score=262.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.99975	major_base=A	major_cov=42/47	major_frequency=9.889e-01	minor_base=T	minor_cov=0/1	new_cov=42/47	polymorphism_frequency=9.889e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=42/48
RA	3391	.	1	491392	0	T	G	consensus_score=279.0	frequency=1	major_base=G	major_cov=44/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/48
RA	3392	.	1	491758	0	C	T	consensus_score=196.3	frequency=1	major_base=T	major_cov=27/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/43
RA	3393	.	1	492562	0	T	C	consensus_score=222.7	frequency=1	major_base=C	major_cov=47/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/29
RA	3394	.	1	492992	0	A	G	consensus_score=307.6	frequency=1	major_base=G	major_cov=43/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/64
RA	3395	.	1	493174	0	A	G	consensus_score=274.5	frequency=1	major_base=G	major_cov=34/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/57
RA	3396	.	1	495810	0	G	A	consensus_score=268.1	frequency=1	major_base=A	major_cov=49/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/46
RA	3397	.	1	499479	0	A	G	consensus_score=323.6	frequency=1	major_base=G	major_cov=56/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/56
RA	3398	.	1	499967	0	A	G	consensus_score=338.3	frequency=1	major_base=G	major_cov=66/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/51
RA	3399	.	1	500366	0	T	C	bias_e_value=6.78523e-08	bias_p_value=3.20029e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=139.4	fisher_strand_p_value=8.97781e-16	frequency=2.796e-01	ks_quality_p_value=1	major_base=T	major_cov=58/9	major_frequency=7.204e-01	minor_base=C	minor_cov=0/26	new_cov=0/26	polymorphism_frequency=2.796e-01	polymorphism_score=16.9	prediction=polymorphism	ref_cov=58/9	total_cov=58/36
RA	3400	.	1	501985	0	C	T	consensus_score=291.2	frequency=1	major_base=T	major_cov=59/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/43
RA	3401	.	1	506359	0	G	A	consensus_score=328.0	frequency=1	major_base=A	major_cov=67/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=67/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/46
RA	3402	.	1	507117	0	T	C	consensus_score=309.7	frequency=1	major_base=C	major_cov=63/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/47
RA	3403	.	1	509326	0	G	T	bias_e_value=7.06721e-09	bias_p_value=3.33329e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=181.1	fisher_strand_p_value=8.77835e-17	frequency=2.809e-01	ks_quality_p_value=1	major_base=G	major_cov=6/58	major_frequency=7.191e-01	minor_base=T	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.809e-01	polymorphism_score=13.5	prediction=polymorphism	ref_cov=6/58	total_cov=31/58
RA	3404	.	1	510072	0	C	T	consensus_score=414.7	frequency=1	major_base=T	major_cov=62/82	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/82	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/82
RA	3405	.	1	511261	0	A	G	bias_e_value=0.00976499	bias_p_value=4.6057e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=208.5	fisher_strand_p_value=1.97277e-10	frequency=2.326e-01	ks_quality_p_value=1	major_base=A	major_cov=39/60	major_frequency=7.674e-01	minor_base=G	minor_cov=30/0	new_cov=30/0	polymorphism_frequency=2.326e-01	polymorphism_score=12.3	prediction=polymorphism	ref_cov=39/60	total_cov=71/60
RA	3406	.	1	511680	0	C	T	consensus_score=354.7	frequency=1	major_base=T	major_cov=54/71	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/71	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/71
RA	3407	.	1	511808	0	C	A	bias_e_value=2120190	bias_p_value=1	consensus_score=309.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999853	major_base=A	major_cov=58/58	major_frequency=9.915e-01	minor_base=C	minor_cov=0/1	new_cov=58/58	polymorphism_frequency=9.915e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=58/59
RA	3408	.	1	511858	0	A	C	bias_e_value=5.97083e-08	bias_p_value=2.81617e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=236.3	fisher_strand_p_value=7.8712e-16	frequency=3.077e-01	ks_quality_p_value=1	major_base=A	major_cov=63/27	major_frequency=6.923e-01	minor_base=C	minor_cov=0/40	new_cov=0/40	polymorphism_frequency=3.077e-01	polymorphism_score=17.6	prediction=polymorphism	ref_cov=63/27	total_cov=63/68
RA	3409	.	1	512440	0	G	T	bias_e_value=6.23923e-05	bias_p_value=2.94276e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=173.1	fisher_strand_p_value=1.02884e-12	frequency=2.444e-01	ks_quality_p_value=1	major_base=G	major_cov=12/56	major_frequency=7.556e-01	minor_base=T	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.444e-01	polymorphism_score=20.7	prediction=polymorphism	ref_cov=12/56	total_cov=34/56
RA	3410	.	1	512454	0	C	A	bias_e_value=0.698048	bias_p_value=3.29238e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=182.5	fisher_strand_p_value=1.74535e-08	frequency=2.069e-01	ks_quality_p_value=1	major_base=C	major_cov=20/49	major_frequency=7.931e-01	minor_base=A	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.069e-01	polymorphism_score=10.6	prediction=polymorphism	ref_cov=20/49	total_cov=39/49
RA	3411	.	1	514355	0	A	G	bias_e_value=1743230	bias_p_value=0.822205	consensus_score=434.7	fisher_strand_p_value=0.466667	frequency=1	ks_quality_p_value=0.999642	major_base=G	major_cov=80/69	major_frequency=9.933e-01	minor_base=A	minor_cov=0/1	new_cov=80/69	polymorphism_frequency=9.933e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=80/70
RA	3412	.	1	515108	0	A	G	bias_e_value=0.0463907	bias_p_value=2.18804e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=118.0	fisher_strand_p_value=1.00758e-09	frequency=2.192e-01	ks_quality_p_value=1	major_base=A	major_cov=10/47	major_frequency=7.808e-01	minor_base=G	minor_cov=16/0	new_cov=16/0	polymorphism_frequency=2.192e-01	polymorphism_score=12.8	prediction=polymorphism	ref_cov=10/47	total_cov=27/47
RA	3413	.	1	515164	0	C	T	bias_e_value=0.128519	bias_p_value=6.06167e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=133.2	fisher_strand_p_value=2.93597e-09	frequency=2.329e-01	ks_quality_p_value=1	major_base=C	major_cov=12/44	major_frequency=7.671e-01	minor_base=T	minor_cov=17/0	new_cov=17/0	polymorphism_frequency=2.329e-01	polymorphism_score=11.4	prediction=polymorphism	ref_cov=12/44	total_cov=29/44
RA	3414	.	1	515759	0	A	G	consensus_score=387.1	frequency=1	major_base=G	major_cov=73/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=73/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=73/60
RA	3415	.	1	516262	0	A	G	bias_e_value=2120140	bias_p_value=0.999972	consensus_score=226.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.9925	major_base=G	major_cov=61/20	major_frequency=9.878e-01	minor_base=A	minor_cov=1/0	new_cov=61/20	polymorphism_frequency=9.878e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=62/20
RA	3416	.	1	520353	0	A	G	consensus_score=306.0	frequency=1	major_base=G	major_cov=46/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/59
RA	3417	.	1	520681	0	A	G	consensus_score=408.5	frequency=1	major_base=G	major_cov=76/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=76/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=76/65
RA	3418	.	1	521425	0	T	C	consensus_score=407.4	frequency=1	major_base=C	major_cov=85/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=85/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=85/52
RA	3419	.	1	522849	0	G	A	consensus_score=226.6	frequency=1	major_base=A	major_cov=44/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/32
RA	3420	.	1	524728	0	C	T	bias_e_value=16508	bias_p_value=0.00778609	consensus_reject=FREQUENCY_CUTOFF	consensus_score=45.3	fisher_strand_p_value=0.640388	frequency=4.578e-01	ks_quality_p_value=0.00153409	major_base=C	major_cov=43/47	major_frequency=5.422e-01	minor_base=T	minor_cov=40/36	new_cov=40/36	polymorphism_frequency=4.578e-01	polymorphism_score=165.9	prediction=polymorphism	ref_cov=43/47	total_cov=83/83
RA	3421	.	1	524745	0	C	T	bias_e_value=817464	bias_p_value=0.385561	consensus_reject=FREQUENCY_CUTOFF	consensus_score=126.3	fisher_strand_p_value=0.125389	frequency=6.467e-01	ks_quality_p_value=0.99932	major_base=T	major_cov=62/57	major_frequency=6.467e-01	minor_base=C	minor_cov=26/39	new_cov=62/57	polymorphism_frequency=6.467e-01	polymorphism_score=139.4	prediction=polymorphism	ref_cov=26/39	total_cov=88/96
RA	3422	.	1	524752	0	A	G	bias_e_value=1575700	bias_p_value=0.743185	consensus_reject=FREQUENCY_CUTOFF	consensus_score=252.0	fisher_strand_p_value=0.494334	frequency=2.418e-01	ks_quality_p_value=0.759368	major_base=A	major_cov=68/70	major_frequency=7.582e-01	minor_base=G	minor_cov=19/25	new_cov=19/25	polymorphism_frequency=2.418e-01	polymorphism_score=83.6	prediction=polymorphism	ref_cov=68/70	total_cov=87/95
RA	3423	.	1	524754	0	A	C	bias_e_value=1781390	bias_p_value=0.840203	consensus_reject=FREQUENCY_CUTOFF	consensus_score=292.4	fisher_strand_p_value=0.490929	frequency=2.458e-01	ks_quality_p_value=1	major_base=A	major_cov=67/68	major_frequency=7.542e-01	minor_base=C	minor_cov=19/25	new_cov=19/25	polymorphism_frequency=2.458e-01	polymorphism_score=104.7	prediction=polymorphism	ref_cov=67/68	total_cov=86/93
RA	3424	.	1	524773	0	T	C	bias_e_value=1765990	bias_p_value=0.832939	consensus_reject=FREQUENCY_CUTOFF	consensus_score=205.9	fisher_strand_p_value=0.4829	frequency=2.619e-01	ks_quality_p_value=0.995785	major_base=T	major_cov=63/61	major_frequency=7.381e-01	minor_base=C	minor_cov=19/25	new_cov=19/25	polymorphism_frequency=2.619e-01	polymorphism_score=90.4	prediction=polymorphism	ref_cov=63/61	total_cov=82/86
RA	3425	.	1	524779	0	C	A	bias_e_value=8.36844	bias_p_value=3.94702e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=232.4	fisher_strand_p_value=0.480351	frequency=2.733e-01	ks_quality_p_value=5.06301e-07	major_base=C	major_cov=59/58	major_frequency=7.267e-01	minor_base=A	minor_cov=19/25	new_cov=19/25	polymorphism_frequency=2.733e-01	polymorphism_score=109.0	prediction=polymorphism	ref_cov=59/58	total_cov=78/83
RA	3426	.	1	524780	0	C	T	bias_e_value=1560330	bias_p_value=0.735939	consensus_reject=FREQUENCY_CUTOFF	consensus_score=213.2	fisher_strand_p_value=0.479011	frequency=2.750e-01	ks_quality_p_value=0.768373	major_base=C	major_cov=59/57	major_frequency=7.250e-01	minor_base=T	minor_cov=19/25	new_cov=19/25	polymorphism_frequency=2.750e-01	polymorphism_score=82.7	prediction=polymorphism	ref_cov=59/57	total_cov=78/83
RA	3427	.	1	524782	0	T	A	bias_e_value=940009	bias_p_value=0.443359	consensus_reject=FREQUENCY_CUTOFF	consensus_score=259.3	fisher_strand_p_value=0.290999	frequency=2.750e-01	ks_quality_p_value=0.53152	major_base=T	major_cov=59/57	major_frequency=7.250e-01	minor_base=A	minor_cov=18/26	new_cov=18/26	polymorphism_frequency=2.750e-01	polymorphism_score=134.7	prediction=polymorphism	ref_cov=59/57	total_cov=77/83
RA	3428	.	1	524784	0	A	C	bias_e_value=924822	bias_p_value=0.436197	consensus_reject=FREQUENCY_CUTOFF	consensus_score=213.4	fisher_strand_p_value=0.595377	frequency=2.803e-01	ks_quality_p_value=0.253385	major_base=A	major_cov=55/58	major_frequency=7.197e-01	minor_base=C	minor_cov=19/25	new_cov=19/25	polymorphism_frequency=2.803e-01	polymorphism_score=112.2	prediction=polymorphism	ref_cov=55/58	total_cov=74/83
RA	3429	.	1	524788	0	G	A	bias_e_value=1871350	bias_p_value=0.882632	consensus_reject=FREQUENCY_CUTOFF	consensus_score=176.1	fisher_strand_p_value=0.720646	frequency=2.876e-01	ks_quality_p_value=0.772163	major_base=G	major_cov=52/57	major_frequency=7.124e-01	minor_base=A	minor_cov=19/25	new_cov=19/25	polymorphism_frequency=2.876e-01	polymorphism_score=86.7	prediction=polymorphism	ref_cov=52/57	total_cov=71/82
RA	3430	.	1	524791	0	T	G	bias_e_value=21.3039	bias_p_value=1.00481e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=122.2	fisher_strand_p_value=0.741171	frequency=6.234e-01	ks_quality_p_value=8.90068e-07	major_base=G	major_cov=46/50	major_frequency=6.234e-01	minor_base=T	minor_cov=26/32	new_cov=46/50	polymorphism_frequency=6.234e-01	polymorphism_score=154.7	prediction=polymorphism	ref_cov=26/32	total_cov=72/82
RA	3431	.	1	524795	0	T	C	bias_e_value=9.95642	bias_p_value=4.69599e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=120.1	fisher_strand_p_value=0.619567	frequency=6.346e-01	ks_quality_p_value=4.72413e-07	major_base=C	major_cov=48/51	major_frequency=6.346e-01	minor_base=T	minor_cov=25/32	new_cov=48/51	polymorphism_frequency=6.346e-01	polymorphism_score=114.6	prediction=polymorphism	ref_cov=25/32	total_cov=73/83
RA	3432	.	1	524856	0	A	G	bias_e_value=506466	bias_p_value=0.238877	consensus_reject=FREQUENCY_CUTOFF	consensus_score=33.0	fisher_strand_p_value=0.0636182	frequency=4.276e-01	ks_quality_p_value=1	major_base=A	major_cov=43/40	major_frequency=5.724e-01	minor_base=G	minor_cov=22/40	new_cov=22/40	polymorphism_frequency=4.276e-01	polymorphism_score=136.8	prediction=polymorphism	ref_cov=43/40	total_cov=65/80
RA	3433	.	1	524870	0	C	G	bias_e_value=315678	bias_p_value=0.148891	consensus_reject=FREQUENCY_CUTOFF	consensus_score=10.3	fisher_strand_p_value=0.0339773	frequency=4.809e-01	ks_quality_p_value=1	major_base=C	major_cov=36/32	major_frequency=5.191e-01	minor_base=G	minor_cov=21/42	new_cov=21/42	polymorphism_frequency=4.809e-01	polymorphism_score=198.1	prediction=polymorphism	ref_cov=36/32	total_cov=58/74
RA	3434	.	1	524878	0	T	C	bias_e_value=40250.6	bias_p_value=0.0189844	consensus_reject=FREQUENCY_CUTOFF	consensus_score=41.1	fisher_strand_p_value=0.00345035	frequency=5.276e-01	ks_quality_p_value=0.798003	major_base=C	major_cov=18/49	major_frequency=5.276e-01	minor_base=T	minor_cov=32/28	new_cov=18/49	polymorphism_frequency=5.276e-01	polymorphism_score=136.8	prediction=polymorphism	ref_cov=32/28	total_cov=52/77
RA	3435	.	1	524947	0	T	C	consensus_score=11.4	frequency=1	major_base=C	major_cov=4/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/2
RA	3436	.	1	526004	0	C	T	bias_e_value=0.00539672	bias_p_value=2.54539e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=190.0	fisher_strand_p_value=1.0621e-10	frequency=2.091e-01	ks_quality_p_value=1	major_base=C	major_cov=62/25	major_frequency=7.909e-01	minor_base=T	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=2.091e-01	polymorphism_score=15.8	prediction=polymorphism	ref_cov=62/25	total_cov=62/48
RA	3437	.	1	526012	0	C	A	bias_e_value=0.0029113	bias_p_value=1.37313e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=243.3	fisher_strand_p_value=5.57972e-11	frequency=2.124e-01	ks_quality_p_value=1	major_base=C	major_cov=63/26	major_frequency=7.876e-01	minor_base=A	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=2.124e-01	polymorphism_score=11.0	prediction=polymorphism	ref_cov=63/26	total_cov=63/50
RA	3438	.	1	526502	0	T	C	consensus_score=315.0	frequency=1	major_base=C	major_cov=55/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/54
RA	3439	.	1	526779	0	G	A	consensus_score=253.6	frequency=1	major_base=A	major_cov=43/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/44
RA	3440	.	1	527808	0	C	T	consensus_score=310.2	frequency=1	major_base=T	major_cov=52/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/56
RA	3441	.	1	528690	0	G	A	consensus_score=308.7	frequency=1	major_base=A	major_cov=59/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/50
RA	3442	.	1	529719	0	G	A	bias_e_value=1690230	bias_p_value=0.797204	consensus_score=371.3	fisher_strand_p_value=0.438462	frequency=1	ks_quality_p_value=0.992396	major_base=A	major_cov=56/73	major_frequency=9.923e-01	minor_base=G	minor_cov=1/0	new_cov=56/73	polymorphism_frequency=9.923e-01	polymorphism_score=-5.4	prediction=consensus	ref_cov=1/0	total_cov=57/73
RA	3443	.	1	531090	0	G	A	consensus_score=378.2	frequency=1	major_base=A	major_cov=58/71	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/71	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/71
RA	3444	.	1	531904	0	T	G	bias_e_value=434219	bias_p_value=0.204802	consensus_score=353.9	fisher_strand_p_value=0.223529	frequency=1	ks_quality_p_value=0.231215	major_base=G	major_cov=55/63	major_frequency=9.833e-01	minor_base=T	minor_cov=2/0	new_cov=55/63	polymorphism_frequency=9.833e-01	polymorphism_score=-3.0	prediction=consensus	ref_cov=2/0	total_cov=57/63
RA	3445	.	1	532190	0	T	C	consensus_score=400.7	frequency=1	major_base=C	major_cov=52/88	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/88	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/88
RA	3446	.	1	533747	0	A	G	consensus_score=425.6	frequency=1	major_base=G	major_cov=85/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=85/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=85/53
RA	3447	.	1	536082	0	T	G	bias_e_value=1618710	bias_p_value=0.763474	consensus_score=345.8	fisher_strand_p_value=0.396694	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=47/73	major_frequency=9.917e-01	minor_base=C	minor_cov=1/0	new_cov=47/73	polymorphism_frequency=9.917e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/73
RA	3448	.	1	540089	0	T	G	bias_e_value=3.31694e-10	bias_p_value=1.56445e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=271.0	fisher_strand_p_value=3.80552e-18	frequency=2.778e-01	ks_quality_p_value=1	major_base=T	major_cov=18/73	major_frequency=7.222e-01	minor_base=G	minor_cov=35/0	new_cov=35/0	polymorphism_frequency=2.778e-01	polymorphism_score=10.8	prediction=polymorphism	ref_cov=18/73	total_cov=54/73
RA	3449	.	1	541582	0	T	C	bias_e_value=1789260	bias_p_value=0.843913	consensus_score=327.1	fisher_strand_p_value=0.496183	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=64/65	major_frequency=9.847e-01	minor_base=A	minor_cov=2/0	new_cov=64/65	polymorphism_frequency=9.847e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/65
RA	3450	.	1	541751	0	C	A	bias_e_value=1230450	bias_p_value=0.580349	consensus_score=306.0	fisher_strand_p_value=0.238491	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=51/55	major_frequency=9.815e-01	minor_base=G	minor_cov=2/0	new_cov=51/55	polymorphism_frequency=9.815e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/55
RA	3451	.	1	542936	0	G	A	consensus_score=306.5	frequency=1	major_base=A	major_cov=53/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/51
RA	3452	.	1	543978	0	G	A	consensus_score=362.2	frequency=1	major_base=A	major_cov=54/69	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/69	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/69
RA	3453	.	1	545658	0	C	T	consensus_score=395.4	frequency=1	major_base=T	major_cov=62/75	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/75	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/75
RA	3454	.	1	546332	0	A	C	bias_e_value=814983	bias_p_value=0.38439	consensus_reject=FREQUENCY_CUTOFF	consensus_score=243.5	fisher_strand_p_value=0.12696	frequency=2.160e-01	ks_quality_p_value=0.982522	major_base=A	major_cov=47/51	major_frequency=7.840e-01	minor_base=C	minor_cov=18/9	new_cov=18/9	polymorphism_frequency=2.160e-01	polymorphism_score=67.2	prediction=polymorphism	ref_cov=47/51	total_cov=65/60
RA	3455	.	1	548860	0	A	T	bias_e_value=259.519	bias_p_value=0.000122403	consensus_reject=FREQUENCY_CUTOFF	consensus_score=157.8	fisher_strand_p_value=9.76348e-06	frequency=2.632e-01	ks_quality_p_value=1	major_base=A	major_cov=29/27	major_frequency=7.368e-01	minor_base=T	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.632e-01	polymorphism_score=11.8	prediction=polymorphism	ref_cov=29/27	total_cov=29/48
RA	3456	.	1	548889	0	C	T	bias_e_value=56.9898	bias_p_value=2.68795e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=131.2	fisher_strand_p_value=2.13312e-06	frequency=2.208e-01	ks_quality_p_value=0.888919	major_base=C	major_cov=37/23	major_frequency=7.792e-01	minor_base=T	minor_cov=0/17	new_cov=0/17	polymorphism_frequency=2.208e-01	polymorphism_score=12.5	prediction=polymorphism	ref_cov=37/23	total_cov=37/40
RA	3457	.	1	553971	0	T	G	consensus_score=348.3	frequency=1	major_base=G	major_cov=55/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/64
RA	3458	.	1	554536	0	A	G	consensus_score=296.4	frequency=1	major_base=G	major_cov=40/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/61
RA	3459	.	1	556419	0	G	A	consensus_score=281.8	frequency=1	major_base=A	major_cov=51/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/48
RA	3460	.	1	560792	0	G	A	consensus_score=278.6	frequency=1	major_base=A	major_cov=44/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/53
RA	3461	.	1	561768	1	.	T	consensus_score=268.2	frequency=1	major_base=T	major_cov=45/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/46
RA	3462	.	1	562978	0	C	G	consensus_score=438.5	frequency=1	major_base=G	major_cov=81/69	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=81/69	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=81/69
RA	3463	.	1	564477	0	T	C	consensus_score=300.2	frequency=1	major_base=C	major_cov=60/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/40
RA	3464	.	1	565691	0	A	G	bias_e_value=1698670	bias_p_value=0.801185	consensus_score=376.4	fisher_strand_p_value=0.44	frequency=1	ks_quality_p_value=0.999871	major_base=G	major_cov=54/70	major_frequency=9.920e-01	minor_base=A	minor_cov=1/0	new_cov=54/70	polymorphism_frequency=9.920e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=55/70
RA	3465	.	1	565873	0	T	C	consensus_score=347.9	frequency=1	major_base=C	major_cov=64/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/51
RA	3466	.	1	565936	0	C	A	consensus_score=311.1	frequency=1	major_base=A	major_cov=60/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/49
RA	3467	.	1	568256	0	A	C	bias_e_value=1.35655e-09	bias_p_value=6.39825e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=263.8	fisher_strand_p_value=1.61304e-17	frequency=2.891e-01	ks_quality_p_value=1	major_base=A	major_cov=70/21	major_frequency=7.109e-01	minor_base=C	minor_cov=0/37	new_cov=0/37	polymorphism_frequency=2.891e-01	polymorphism_score=12.3	prediction=polymorphism	ref_cov=70/21	total_cov=70/58
RA	3468	.	1	572891	0	G	A	consensus_score=307.9	frequency=1	major_base=A	major_cov=63/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/43
RA	3469	.	1	574830	0	G	A	consensus_score=197.9	frequency=1	major_base=A	major_cov=38/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/33
RA	3470	.	1	575111	0	G	A	consensus_score=355.5	frequency=1	major_base=A	major_cov=67/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=67/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/57
RA	3471	.	1	576242	0	T	C	consensus_score=369.0	frequency=1	major_base=C	major_cov=53/74	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/74	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/74
RA	3472	.	1	576820	0	A	G	consensus_score=446.3	frequency=1	major_base=G	major_cov=76/68	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=76/68	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=76/68
RA	3473	.	1	577638	0	G	T	consensus_score=401.8	frequency=1	major_base=T	major_cov=74/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=74/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=74/66
RA	3474	.	1	577676	0	G	T	consensus_score=425.9	frequency=1	major_base=T	major_cov=79/74	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=79/74	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=79/74
RA	3475	.	1	579251	0	T	C	consensus_score=240.7	frequency=1	major_base=C	major_cov=43/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/38
RA	3476	.	1	580808	0	G	A	consensus_score=318.1	frequency=1	major_base=A	major_cov=62/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/50
RA	3477	.	1	581418	0	T	G	bias_e_value=7.73715e-09	bias_p_value=3.64926e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=170.8	fisher_strand_p_value=9.6341e-17	frequency=3.226e-01	ks_quality_p_value=1	major_base=T	major_cov=9/54	major_frequency=6.774e-01	minor_base=G	minor_cov=30/0	new_cov=30/0	polymorphism_frequency=3.226e-01	polymorphism_score=10.1	prediction=polymorphism	ref_cov=9/54	total_cov=39/54
RA	3478	.	1	581431	0	C	T	bias_e_value=0.00374675	bias_p_value=1.76717e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=148.5	fisher_strand_p_value=7.25849e-11	frequency=2.418e-01	ks_quality_p_value=1	major_base=C	major_cov=17/52	major_frequency=7.582e-01	minor_base=T	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.418e-01	polymorphism_score=14.0	prediction=polymorphism	ref_cov=17/52	total_cov=39/52
RA	3479	.	1	581467	0	G	T	bias_e_value=0.000194912	bias_p_value=9.19309e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=196.5	fisher_strand_p_value=3.35254e-12	frequency=2.371e-01	ks_quality_p_value=1	major_base=G	major_cov=16/58	major_frequency=7.629e-01	minor_base=T	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.371e-01	polymorphism_score=18.0	prediction=polymorphism	ref_cov=16/58	total_cov=39/58
RA	3480	.	1	586720	0	T	C	consensus_score=356.0	frequency=1	major_base=C	major_cov=59/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/66
RA	3481	.	1	587584	0	T	C	consensus_score=398.6	frequency=1	major_base=C	major_cov=71/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=71/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=71/59
RA	3482	.	1	588454	0	G	A	consensus_score=265.8	frequency=1	major_base=A	major_cov=49/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/44
RA	3483	.	1	592346	0	T	C	consensus_score=266.7	frequency=1	major_base=C	major_cov=42/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/49
RA	3484	.	1	595597	0	C	T	consensus_score=272.1	frequency=1	major_base=T	major_cov=48/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/47
RA	3485	.	1	597866	0	A	C	consensus_score=119.3	frequency=1	major_base=C	major_cov=14/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/26
RA	3486	.	1	599392	0	G	T	consensus_score=256.2	frequency=1	major_base=T	major_cov=43/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/47
RA	3487	.	1	601248	0	A	G	consensus_score=243.6	frequency=1	major_base=G	major_cov=36/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/48
RA	3488	.	1	601279	0	A	G	consensus_score=277.3	frequency=1	major_base=G	major_cov=40/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/51
RA	3489	.	1	601412	0	A	C	consensus_score=123.8	frequency=1	major_base=C	major_cov=15/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/30
RA	3490	.	1	601423	0	T	A	consensus_score=121.5	frequency=1	major_base=A	major_cov=15/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/29
RA	3491	.	1	601425	0	C	G	consensus_score=127.4	frequency=1	major_base=G	major_cov=15/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/29
RA	3492	.	1	601427	0	C	T	consensus_score=118.7	frequency=1	major_base=T	major_cov=15/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/29
RA	3493	.	1	601432	0	G	C	consensus_score=122.2	frequency=1	major_base=C	major_cov=15/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/29
RA	3494	.	1	602411	0	A	.	consensus_score=260.1	frequency=1	major_base=.	major_cov=31/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/31
RA	3495	.	1	602421	0	T	C	consensus_score=189.2	frequency=1	major_base=C	major_cov=31/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/32
RA	3496	.	1	602585	0	T	C	consensus_score=234.1	frequency=1	major_base=C	major_cov=44/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/33
RA	3497	.	1	602596	0	T	G	consensus_score=218.9	frequency=1	major_base=G	major_cov=45/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/33
RA	3498	.	1	602619	0	G	A	consensus_score=228.0	frequency=1	major_base=A	major_cov=48/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/33
RA	3499	.	1	602623	0	G	A	consensus_score=233.8	frequency=1	major_base=A	major_cov=47/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/32
RA	3500	.	1	602666	0	C	T	consensus_score=228.2	frequency=1	major_base=T	major_cov=46/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/34
RA	3501	.	1	602683	0	G	A	consensus_score=211.4	frequency=1	major_base=A	major_cov=43/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/33
RA	3502	.	1	602703	0	G	T	consensus_score=216.2	frequency=1	major_base=T	major_cov=40/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/36
RA	3503	.	1	602716	0	C	T	consensus_score=222.3	frequency=1	major_base=T	major_cov=37/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/41
RA	3504	.	1	602730	0	A	G	consensus_score=235.1	frequency=1	major_base=G	major_cov=38/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/44
RA	3505	.	1	602863	0	T	C	consensus_score=173.7	frequency=1	major_base=C	major_cov=21/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/39
RA	3506	.	1	602870	0	T	C	consensus_score=167.7	frequency=1	major_base=C	major_cov=20/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/37
RA	3507	.	1	602946	0	C	G	consensus_score=79.8	frequency=1	major_base=G	major_cov=12/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/21
RA	3508	.	1	602962	0	T	C	bias_e_value=1527630	bias_p_value=0.720513	consensus_score=31.2	deleted=1	fisher_strand_p_value=0.352941	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=5/11	major_frequency=9.412e-01	minor_base=G	minor_cov=1/0	new_cov=5/11	polymorphism_frequency=9.412e-01	polymorphism_score=-5.7	prediction=consensus	ref_cov=0/0	total_cov=6/11
RA	3509	.	1	602963	0	T	G	consensus_score=39.3	deleted=1	frequency=1	major_base=G	major_cov=6/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/11
RA	3510	.	1	602964	0	G	A	bias_e_value=1527630	bias_p_value=0.720513	consensus_score=32.7	deleted=1	fisher_strand_p_value=0.352941	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=5/11	major_frequency=9.412e-01	minor_base=G	minor_cov=1/0	new_cov=5/11	polymorphism_frequency=9.412e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=6/11
RA	3511	.	1	602970	0	T	C	consensus_score=34.5	deleted=1	frequency=1	major_base=C	major_cov=6/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/11
RA	3512	.	1	602974	0	G	A	consensus_score=35.4	deleted=1	frequency=1	major_base=A	major_cov=6/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/11
RA	3513	.	1	602975	0	G	T	consensus_score=37.6	deleted=1	frequency=1	major_base=T	major_cov=6/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/11
RA	3514	.	1	602977	0	G	C	consensus_score=38.0	deleted=1	frequency=1	major_base=C	major_cov=6/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/11
RA	3515	.	1	605033	0	C	G	bias_e_value=1739520	bias_p_value=0.820454	consensus_score=316.9	fisher_strand_p_value=0.464286	frequency=1	ks_quality_p_value=0.999839	major_base=G	major_cov=51/60	major_frequency=9.911e-01	minor_base=A	minor_cov=1/0	new_cov=51/60	polymorphism_frequency=9.911e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/60
RA	3516	.	1	606065	0	A	C	consensus_score=242.4	frequency=1	major_base=C	major_cov=44/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/36
RA	3517	.	1	606070	0	T	C	consensus_score=235.4	frequency=1	major_base=C	major_cov=45/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/36
RA	3518	.	1	612407	0	G	T	consensus_score=269.0	frequency=1	major_base=T	major_cov=40/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/49
RA	3519	.	1	612483	0	C	T	consensus_score=257.3	frequency=1	major_base=T	major_cov=41/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/49
RA	3520	.	1	612705	0	C	T	consensus_score=332.5	frequency=1	major_base=T	major_cov=58/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/57
RA	3521	.	1	612981	0	T	C	consensus_score=275.3	frequency=1	major_base=C	major_cov=48/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/47
RA	3522	.	1	613034	0	T	C	consensus_score=303.6	frequency=1	major_base=C	major_cov=53/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/51
RA	3523	.	1	613466	0	C	A	bias_e_value=3.11846e-05	bias_p_value=1.47084e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=175.3	fisher_strand_p_value=5.01634e-13	frequency=2.688e-01	ks_quality_p_value=1	major_base=C	major_cov=54/14	major_frequency=7.312e-01	minor_base=A	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.688e-01	polymorphism_score=28.4	prediction=polymorphism	ref_cov=54/14	total_cov=54/39
RA	3524	.	1	613490	0	G	A	bias_e_value=0.000106934	bias_p_value=5.04361e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=148.0	fisher_strand_p_value=1.79846e-12	frequency=2.809e-01	ks_quality_p_value=1	major_base=G	major_cov=50/14	major_frequency=7.191e-01	minor_base=A	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.809e-01	polymorphism_score=14.9	prediction=polymorphism	ref_cov=50/14	total_cov=50/40
RA	3525	.	1	613516	0	A	C	bias_e_value=0.00552372	bias_p_value=2.60529e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=161.5	fisher_strand_p_value=1.08908e-10	frequency=2.706e-01	ks_quality_p_value=0.999192	major_base=A	major_cov=46/16	major_frequency=7.294e-01	minor_base=C	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=2.706e-01	polymorphism_score=11.7	prediction=polymorphism	ref_cov=46/16	total_cov=46/40
RA	3526	.	1	616243	0	G	A	consensus_score=331.8	frequency=1	major_base=A	major_cov=50/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/66
RA	3527	.	1	616878	0	T	C	consensus_score=412.8	frequency=1	major_base=C	major_cov=66/70	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/70	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/70
RA	3528	.	1	616908	0	T	C	consensus_score=342.2	frequency=1	major_base=C	major_cov=60/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/59
RA	3529	.	1	618698	0	C	T	bias_e_value=4.60289e-06	bias_p_value=2.17098e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=117.1	fisher_strand_p_value=6.93615e-14	frequency=3.049e-01	ks_quality_p_value=1	major_base=C	major_cov=48/9	major_frequency=6.951e-01	minor_base=T	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=3.049e-01	polymorphism_score=19.7	prediction=polymorphism	ref_cov=48/9	total_cov=48/34
RA	3530	.	1	619149	0	A	G	consensus_score=281.4	frequency=1	major_base=G	major_cov=53/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/40
RA	3531	.	1	620222	0	G	A	consensus_score=327.2	frequency=1	major_base=A	major_cov=51/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/63
RA	3532	.	1	621472	0	C	T	consensus_score=366.2	frequency=1	major_base=T	major_cov=58/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/65
RA	3533	.	1	621944	0	C	A	consensus_score=106.5	frequency=1	major_base=A	major_cov=18/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/21
RA	3534	.	1	623617	0	T	C	consensus_score=266.8	frequency=1	major_base=C	major_cov=42/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/50
RA	3535	.	1	623696	0	T	C	bias_e_value=1702200	bias_p_value=0.80285	consensus_score=299.9	fisher_strand_p_value=0.442308	frequency=1	ks_quality_p_value=0.999253	major_base=C	major_cov=45/58	major_frequency=9.904e-01	minor_base=A	minor_cov=1/0	new_cov=45/58	polymorphism_frequency=9.904e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/58
RA	3536	.	1	624077	0	C	T	bias_e_value=2120190	bias_p_value=1	consensus_score=259.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999766	major_base=T	major_cov=44/48	major_frequency=9.892e-01	minor_base=G	minor_cov=0/1	new_cov=44/48	polymorphism_frequency=9.892e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/49
RA	3537	.	1	624479	0	T	C	consensus_score=276.3	frequency=1	major_base=C	major_cov=31/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/59
RA	3538	.	1	624883	0	G	A	bias_e_value=0.0135779	bias_p_value=6.40407e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=101.7	fisher_strand_p_value=2.81128e-10	frequency=2.667e-01	ks_quality_p_value=0.99035	major_base=G	major_cov=43/12	major_frequency=7.333e-01	minor_base=A	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.667e-01	polymorphism_score=19.2	prediction=polymorphism	ref_cov=43/12	total_cov=43/32
RA	3539	.	1	624929	0	G	A	consensus_score=283.7	frequency=1	major_base=A	major_cov=58/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/37
RA	3540	.	1	625534	0	T	G	consensus_score=304.2	frequency=1	major_base=G	major_cov=48/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/52
RA	3541	.	1	626855	0	G	A	bias_e_value=0.4938	bias_p_value=2.32903e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=152.3	fisher_strand_p_value=1.2112e-08	frequency=2.381e-01	ks_quality_p_value=1	major_base=G	major_cov=32/48	major_frequency=7.619e-01	minor_base=A	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.381e-01	polymorphism_score=21.3	prediction=polymorphism	ref_cov=32/48	total_cov=57/48
RA	3542	.	1	628978	0	C	T	consensus_score=274.2	frequency=1	major_base=T	major_cov=44/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/52
RA	3543	.	1	630039	0	T	C	consensus_score=322.9	frequency=1	major_base=C	major_cov=55/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/56
RA	3544	.	1	631960	0	T	C	consensus_score=315.2	frequency=1	major_base=C	major_cov=45/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/66
RA	3545	.	1	632953	0	A	G	consensus_score=180.3	frequency=1	major_base=G	major_cov=40/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/23
RA	3546	.	1	633027	0	C	T	consensus_score=260.9	frequency=1	major_base=T	major_cov=50/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/39
RA	3547	.	1	634275	0	T	C	consensus_score=317.2	frequency=1	major_base=C	major_cov=54/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/55
RA	3548	.	1	636270	0	A	C	consensus_score=297.3	frequency=1	major_base=C	major_cov=55/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/47
RA	3549	.	1	637883	0	A	G	consensus_score=279.6	frequency=1	major_base=G	major_cov=47/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/47
RA	3550	.	1	643800	0	T	C	bias_e_value=2120190	bias_p_value=0.999996	consensus_score=227.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.997007	major_base=C	major_cov=42/35	major_frequency=9.872e-01	minor_base=T	minor_cov=1/0	new_cov=42/35	polymorphism_frequency=9.872e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=43/35
RA	3551	.	1	646353	0	A	G	consensus_score=274.2	frequency=1	major_base=G	major_cov=50/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/51
RA	3552	.	1	648071	0	C	.	consensus_score=158.2	frequency=1	major_base=.	major_cov=19/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/20
RA	3553	.	1	648597	0	C	T	consensus_score=234.1	frequency=1	major_base=T	major_cov=45/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/37
RA	3554	.	1	651411	0	C	G	consensus_score=216.2	frequency=1	major_base=G	major_cov=43/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/32
RA	3555	.	1	651412	0	G	T	consensus_score=216.1	frequency=1	major_base=T	major_cov=43/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/32
RA	3556	.	1	651413	0	A	C	consensus_score=220.9	frequency=1	major_base=C	major_cov=43/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/32
RA	3557	.	1	651524	0	G	A	consensus_score=231.8	frequency=1	major_base=A	major_cov=49/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/34
RA	3558	.	1	652184	0	G	A	consensus_score=266.6	frequency=1	major_base=A	major_cov=51/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/44
RA	3559	.	1	652500	1	.	T	consensus_score=163.4	frequency=1	major_base=T	major_cov=21/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/37
RA	3560	.	1	652500	2	.	T	consensus_score=161.7	frequency=1	major_base=T	major_cov=21/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/37
RA	3561	.	1	652920	0	G	T	consensus_score=104.5	frequency=1	major_base=T	major_cov=14/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/22
RA	3562	.	1	653064	0	T	C	consensus_score=93.1	frequency=1	major_base=C	major_cov=22/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/10
RA	3563	.	1	654408	0	T	C	consensus_score=114.5	frequency=1	major_base=C	major_cov=14/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/24
RA	3564	.	1	656790	0	A	G	consensus_score=276.0	frequency=1	major_base=G	major_cov=50/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/42
RA	3565	.	1	657485	0	G	A	consensus_score=287.1	frequency=1	major_base=A	major_cov=63/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/37
RA	3566	.	1	661017	0	C	T	consensus_score=279.3	frequency=1	major_base=T	major_cov=53/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/46
RA	3567	.	1	661305	0	G	A	consensus_score=325.0	frequency=1	major_base=A	major_cov=59/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/56
RA	3568	.	1	662044	0	G	A	consensus_score=139.2	frequency=1	major_base=A	major_cov=26/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/24
RA	3569	.	1	663804	0	G	T	consensus_score=303.9	frequency=1	major_base=T	major_cov=52/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/54
RA	3570	.	1	665023	0	T	G	bias_e_value=4.1004e-05	bias_p_value=1.93397e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=166.6	fisher_strand_p_value=6.66027e-13	frequency=3.455e-01	ks_quality_p_value=1	major_base=T	major_cov=25/47	major_frequency=6.545e-01	minor_base=G	minor_cov=38/0	new_cov=38/0	polymorphism_frequency=3.455e-01	polymorphism_score=31.4	prediction=polymorphism	ref_cov=25/47	total_cov=63/47
RA	3571	.	1	665400	0	T	C	bias_e_value=2120190	bias_p_value=0.999999	consensus_score=389.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998309	major_base=C	major_cov=65/72	major_frequency=9.928e-01	minor_base=G	minor_cov=0/1	new_cov=65/72	polymorphism_frequency=9.928e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/73
RA	3572	.	1	665447	0	A	C	consensus_score=370.9	frequency=1	major_base=C	major_cov=62/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/64
RA	3573	.	1	666485	0	G	A	bias_e_value=2120200	bias_p_value=1	consensus_score=232.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=41/41	major_frequency=9.880e-01	minor_base=C	minor_cov=0/1	new_cov=41/41	polymorphism_frequency=9.880e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/42
RA	3574	.	1	671648	0	C	T	consensus_score=288.2	frequency=1	major_base=T	major_cov=48/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/50
RA	3575	.	1	672286	0	G	C	consensus_score=89.9	frequency=1	major_base=C	major_cov=21/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/11
RA	3576	.	1	673446	0	G	A	consensus_score=207.8	frequency=1	major_base=A	major_cov=40/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/33
RA	3577	.	1	675761	0	C	T	consensus_score=289.3	frequency=1	major_base=T	major_cov=53/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/49
RA	3578	.	1	675956	0	G	A	consensus_score=267.7	frequency=1	major_base=A	major_cov=61/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/32
RA	3579	.	1	676640	0	C	T	bias_e_value=948152	bias_p_value=0.4472	consensus_score=338.3	fisher_strand_p_value=0.156737	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=47/74	major_frequency=9.837e-01	minor_base=A	minor_cov=2/0	new_cov=47/74	polymorphism_frequency=9.837e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/74
RA	3580	.	1	678250	0	C	T	consensus_score=352.1	frequency=1	major_base=T	major_cov=50/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/67
RA	3581	.	1	679253	1	.	G	bias_e_value=1330260	bias_p_value=0.627422	consensus_score=281.1	fisher_strand_p_value=0.297379	frequency=1	ks_quality_p_value=0.917997	major_base=G	major_cov=64/35	major_frequency=9.706e-01	minor_base=.	minor_cov=1/2	new_cov=64/35	polymorphism_frequency=9.706e-01	polymorphism_score=3.6	prediction=consensus	ref_cov=1/2	total_cov=65/37
RA	3582	.	1	679253	2	.	T	bias_e_value=1330260	bias_p_value=0.627422	consensus_score=284.2	fisher_strand_p_value=0.297379	frequency=1	ks_quality_p_value=0.917997	major_base=T	major_cov=64/35	major_frequency=9.706e-01	minor_base=.	minor_cov=1/2	new_cov=64/35	polymorphism_frequency=9.706e-01	polymorphism_score=2.3	prediction=consensus	ref_cov=1/2	total_cov=65/37
RA	3583	.	1	680126	0	A	G	consensus_score=383.6	frequency=1	major_base=G	major_cov=59/72	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/72	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/72
RA	3584	.	1	683897	0	T	G	bias_e_value=4.91578e-11	bias_p_value=2.31855e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=133.2	fisher_strand_p_value=5.38375e-19	frequency=4.022e-01	ks_quality_p_value=1	major_base=T	major_cov=7/48	major_frequency=5.978e-01	minor_base=G	minor_cov=37/0	new_cov=37/0	polymorphism_frequency=4.022e-01	polymorphism_score=18.5	prediction=polymorphism	ref_cov=7/48	total_cov=44/48
RA	3585	.	1	683924	0	T	G	bias_e_value=3.70825	bias_p_value=1.74901e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=203.8	fisher_strand_p_value=1.0231e-07	frequency=2.549e-01	ks_quality_p_value=1	major_base=T	major_cov=35/41	major_frequency=7.451e-01	minor_base=G	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=2.549e-01	polymorphism_score=18.8	prediction=polymorphism	ref_cov=35/41	total_cov=63/41
RA	3586	.	1	684409	0	A	G	consensus_score=315.7	frequency=1	major_base=G	major_cov=55/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/53
RA	3587	.	1	685908	0	C	T	consensus_score=291.2	frequency=1	major_base=T	major_cov=56/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/45
RA	3588	.	1	687935	0	A	T	bias_e_value=2120200	bias_p_value=1	consensus_score=315.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=63/47	major_frequency=9.910e-01	minor_base=C	minor_cov=1/0	new_cov=63/47	polymorphism_frequency=9.910e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/47
RA	3589	.	1	689028	0	C	A	bias_e_value=1741860	bias_p_value=0.821555	consensus_score=371.2	fisher_strand_p_value=0.465649	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=60/70	major_frequency=9.924e-01	minor_base=G	minor_cov=1/0	new_cov=60/70	polymorphism_frequency=9.924e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/70
RA	3590	.	1	690144	0	T	G	consensus_score=283.3	frequency=1	major_base=G	major_cov=57/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/42
RA	3591	.	1	691284	0	G	C	bias_e_value=2120200	bias_p_value=1	consensus_score=335.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=54/62	major_frequency=9.915e-01	minor_base=T	minor_cov=0/1	new_cov=54/62	polymorphism_frequency=9.915e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/63
RA	3592	.	1	693742	0	G	A	bias_e_value=2120200	bias_p_value=1	consensus_score=279.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=46/54	major_frequency=9.901e-01	minor_base=G	minor_cov=0/1	new_cov=46/54	polymorphism_frequency=9.901e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=46/56
RA	3593	.	1	696279	0	T	G	consensus_score=362.0	frequency=1	major_base=G	major_cov=56/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/67
RA	3594	.	1	698890	0	T	C	consensus_score=320.7	frequency=1	major_base=C	major_cov=57/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/48
RA	3595	.	1	699025	0	A	G	consensus_score=279.4	frequency=1	major_base=G	major_cov=48/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/48
RA	3596	.	1	699232	0	A	G	consensus_score=297.2	frequency=1	major_base=G	major_cov=53/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/47
RA	3597	.	1	700904	0	G	A	consensus_score=230.5	frequency=1	major_base=A	major_cov=52/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/28
RA	3598	.	1	701399	0	C	G	bias_e_value=2120190	bias_p_value=0.999999	consensus_score=320.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998414	major_base=G	major_cov=60/46	major_frequency=9.907e-01	minor_base=A	minor_cov=1/0	new_cov=60/46	polymorphism_frequency=9.907e-01	polymorphism_score=-5.1	prediction=consensus	ref_cov=0/0	total_cov=61/46
RA	3599	.	1	702272	0	A	G	bias_e_value=2119240	bias_p_value=0.99955	consensus_score=276.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.970158	major_base=G	major_cov=53/44	major_frequency=9.898e-01	minor_base=A	minor_cov=1/0	new_cov=53/44	polymorphism_frequency=9.898e-01	polymorphism_score=-5.2	prediction=consensus	ref_cov=1/0	total_cov=54/44
RA	3600	.	1	705539	0	G	A	consensus_score=246.0	frequency=1	major_base=A	major_cov=45/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/44
RA	3601	.	1	706589	0	A	G	consensus_score=229.2	frequency=1	major_base=G	major_cov=28/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/50
RA	3602	.	1	706883	0	T	C	consensus_score=197.3	frequency=1	major_base=C	major_cov=30/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/38
RA	3603	.	1	707442	0	A	G	consensus_score=294.2	frequency=1	major_base=G	major_cov=53/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/51
RA	3604	.	1	707708	0	C	T	bias_e_value=1568700	bias_p_value=0.739885	consensus_score=220.7	fisher_strand_p_value=0.455696	frequency=1	ks_quality_p_value=0.816396	major_base=T	major_cov=35/43	major_frequency=9.873e-01	minor_base=C	minor_cov=1/0	new_cov=35/43	polymorphism_frequency=9.873e-01	polymorphism_score=-5.1	prediction=consensus	ref_cov=1/0	total_cov=36/43
RA	3605	.	1	708165	0	A	G	consensus_score=197.3	frequency=1	major_base=G	major_cov=30/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/36
RA	3606	.	1	708224	0	A	G	consensus_score=227.3	frequency=1	major_base=G	major_cov=43/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/40
RA	3607	.	1	709744	0	G	C	consensus_score=252.8	frequency=1	major_base=C	major_cov=34/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/54
RA	3608	.	1	709937	0	G	A	consensus_score=133.8	frequency=1	major_base=A	major_cov=29/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/19
RA	3609	.	1	711278	0	T	C	consensus_score=315.3	frequency=1	major_base=C	major_cov=54/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/55
RA	3610	.	1	711845	0	C	T	consensus_score=234.4	frequency=1	major_base=T	major_cov=38/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/45
RA	3611	.	1	714920	0	C	T	consensus_score=181.9	frequency=1	major_base=T	major_cov=33/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/38
RA	3612	.	1	716292	0	A	G	consensus_score=245.4	frequency=1	major_base=G	major_cov=32/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/52
RA	3613	.	1	719066	0	C	T	consensus_score=168.0	frequency=1	major_base=T	major_cov=25/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/35
RA	3614	.	1	719481	0	A	G	consensus_score=206.4	frequency=1	major_base=G	major_cov=36/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/35
RA	3615	.	1	720096	0	G	T	bias_e_value=0.073302	bias_p_value=3.45732e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=119.7	fisher_strand_p_value=1.62806e-09	frequency=2.676e-01	ks_quality_p_value=1	major_base=G	major_cov=12/40	major_frequency=7.324e-01	minor_base=T	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.676e-01	polymorphism_score=16.4	prediction=polymorphism	ref_cov=12/40	total_cov=31/40
RA	3616	.	1	720116	0	C	T	bias_e_value=0.0733795	bias_p_value=3.46098e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=94.8	fisher_strand_p_value=1.62986e-09	frequency=2.794e-01	ks_quality_p_value=1	major_base=C	major_cov=11/38	major_frequency=7.206e-01	minor_base=T	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.794e-01	polymorphism_score=11.5	prediction=polymorphism	ref_cov=11/38	total_cov=30/38
RA	3617	.	1	721304	0	T	C	consensus_score=188.0	frequency=1	major_base=C	major_cov=40/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/25
RA	3618	.	1	722146	0	T	C	consensus_score=277.2	frequency=1	major_base=C	major_cov=54/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/37
RA	3619	.	1	723849	0	A	G	consensus_score=113.9	frequency=1	major_base=G	major_cov=15/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/25
RA	3620	.	1	723886	0	T	.	consensus_score=72.4	deleted=1	frequency=1	major_base=.	major_cov=9/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/11
RA	3621	.	1	723895	0	T	C	consensus_score=45.4	deleted=1	frequency=1	major_base=C	major_cov=9/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/9
RA	3622	.	1	723904	0	A	C	consensus_score=44.2	deleted=1	frequency=1	major_base=C	major_cov=9/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/9
RA	3623	.	1	724298	0	G	T	consensus_score=12.5	deleted=1	frequency=1	major_base=T	major_cov=5/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/2
RA	3624	.	1	724359	0	G	A	consensus_score=100.6	frequency=1	major_base=A	major_cov=17/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/23
RA	3625	.	1	725854	0	G	T	consensus_score=124.3	frequency=1	major_base=T	major_cov=17/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/26
RA	3626	.	1	726359	0	C	T	consensus_score=225.6	frequency=1	major_base=T	major_cov=46/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/33
RA	3627	.	1	726597	0	T	C	consensus_score=181.5	frequency=1	major_base=C	major_cov=31/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/30
RA	3628	.	1	726708	0	T	C	consensus_score=199.4	frequency=1	major_base=C	major_cov=34/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/33
RA	3629	.	1	726719	1	.	T	consensus_score=174.7	frequency=1	major_base=T	major_cov=28/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/33
RA	3630	.	1	726719	2	.	T	consensus_score=173.3	frequency=1	major_base=T	major_cov=28/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/33
RA	3631	.	1	731378	0	G	T	consensus_score=127.8	frequency=1	major_base=T	major_cov=22/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/25
RA	3632	.	1	731381	0	T	C	consensus_score=144.1	frequency=1	major_base=C	major_cov=23/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/25
RA	3633	.	1	731473	0	A	G	consensus_score=62.3	deleted=1	frequency=1	major_base=G	major_cov=17/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/5
RA	3634	.	1	738961	0	G	A	consensus_score=137.1	frequency=1	major_base=A	major_cov=38/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/30
RA	3635	.	1	738970	0	G	A	consensus_score=128.7	frequency=1	major_base=A	major_cov=36/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/28
RA	3636	.	1	739038	0	A	G	bias_e_value=2119730	bias_p_value=0.999781	consensus_score=30.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.979145	major_base=G	major_cov=14/11	major_frequency=8.065e-01	minor_base=A	minor_cov=3/3	new_cov=14/11	polymorphism_frequency=8.065e-01	polymorphism_score=6.3	prediction=consensus	ref_cov=3/3	total_cov=17/14
RA	3637	.	1	742687	0	A	G	consensus_score=299.3	frequency=1	major_base=G	major_cov=43/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/61
RA	3638	.	1	744751	0	G	A	consensus_score=277.9	frequency=1	major_base=A	major_cov=51/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/46
RA	3639	.	1	746603	0	A	G	consensus_score=297.2	frequency=1	major_base=G	major_cov=39/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/59
RA	3640	.	1	749188	0	T	C	consensus_score=252.9	frequency=1	major_base=C	major_cov=50/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/39
RA	3641	.	1	750505	0	G	A	consensus_score=245.9	frequency=1	major_base=A	major_cov=42/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/45
RA	3642	.	1	753055	0	G	A	consensus_score=301.6	frequency=1	major_base=A	major_cov=47/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/58
RA	3643	.	1	755977	0	A	C	bias_e_value=441973	bias_p_value=0.208459	consensus_score=243.8	fisher_strand_p_value=0.0529227	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=45/39	major_frequency=9.545e-01	minor_base=A	minor_cov=0/4	new_cov=45/39	polymorphism_frequency=9.545e-01	polymorphism_score=-5.7	prediction=consensus	ref_cov=0/4	total_cov=45/43
RA	3644	.	1	756456	0	G	T	consensus_score=297.7	frequency=1	major_base=T	major_cov=49/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/55
RA	3645	.	1	758289	0	A	G	consensus_score=312.7	frequency=1	major_base=G	major_cov=58/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/52
RA	3646	.	1	758440	0	C	T	bias_e_value=2120130	bias_p_value=0.99997	consensus_score=377.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.992278	major_base=T	major_cov=68/60	major_frequency=9.922e-01	minor_base=C	minor_cov=1/0	new_cov=68/60	polymorphism_frequency=9.922e-01	polymorphism_score=-5.1	prediction=consensus	ref_cov=1/0	total_cov=69/60
RA	3647	.	1	759268	0	T	C	consensus_score=298.0	frequency=1	major_base=C	major_cov=41/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/57
RA	3648	.	1	760761	0	T	C	consensus_score=310.6	frequency=1	major_base=C	major_cov=45/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/59
RA	3649	.	1	761274	0	G	A	consensus_score=310.6	frequency=1	major_base=A	major_cov=41/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/67
RA	3650	.	1	761853	0	T	C	bias_e_value=1674510	bias_p_value=0.789791	consensus_score=251.8	fisher_strand_p_value=0.431818	frequency=1	ks_quality_p_value=0.987281	major_base=C	major_cov=50/37	major_frequency=9.886e-01	minor_base=T	minor_cov=0/1	new_cov=50/37	polymorphism_frequency=9.886e-01	polymorphism_score=-5.1	prediction=consensus	ref_cov=0/1	total_cov=50/38
RA	3651	.	1	763259	0	A	G	consensus_score=391.3	frequency=1	major_base=G	major_cov=84/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=84/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=84/52
RA	3652	.	1	766332	0	C	T	consensus_score=355.0	frequency=1	major_base=T	major_cov=68/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=68/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/51
RA	3653	.	1	767681	0	G	A	consensus_score=284.8	frequency=1	major_base=A	major_cov=58/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/42
RA	3654	.	1	767895	0	T	A	bias_e_value=0.00931174	bias_p_value=4.39193e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=157.7	fisher_strand_p_value=1.87721e-10	frequency=2.674e-01	ks_quality_p_value=1	major_base=T	major_cov=17/46	major_frequency=7.326e-01	minor_base=A	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.674e-01	polymorphism_score=12.4	prediction=polymorphism	ref_cov=17/46	total_cov=40/46
RA	3655	.	1	769953	0	A	G	consensus_score=161.1	frequency=1	major_base=G	major_cov=27/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/27
RA	3656	.	1	770431	0	T	C	consensus_score=231.5	frequency=1	major_base=C	major_cov=35/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/46
RA	3657	.	1	772753	0	T	C	consensus_score=309.7	frequency=1	major_base=C	major_cov=54/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/47
RA	3658	.	1	772860	0	A	G	consensus_score=315.6	frequency=1	major_base=G	major_cov=60/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/47
RA	3659	.	1	777187	0	C	T	consensus_score=256.1	frequency=1	major_base=T	major_cov=46/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/41
RA	3660	.	1	780027	0	C	T	consensus_score=223.7	frequency=1	major_base=T	major_cov=47/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/41
RA	3661	.	1	780197	0	C	T	consensus_score=251.0	frequency=1	major_base=T	major_cov=42/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/48
RA	3662	.	1	780801	0	C	T	consensus_score=242.9	frequency=1	major_base=T	major_cov=53/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/32
RA	3663	.	1	784164	0	A	T	bias_e_value=3.94547e-05	bias_p_value=1.8609e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=132.2	fisher_strand_p_value=6.39984e-13	frequency=3.188e-01	ks_quality_p_value=1	major_base=A	major_cov=6/41	major_frequency=6.812e-01	minor_base=T	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=3.188e-01	polymorphism_score=21.5	prediction=polymorphism	ref_cov=6/41	total_cov=28/41
RA	3664	.	1	786702	0	T	G	bias_e_value=2116980	bias_p_value=0.998484	consensus_score=312.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.945439	major_base=G	major_cov=57/44	major_frequency=9.902e-01	minor_base=T	minor_cov=1/0	new_cov=57/44	polymorphism_frequency=9.902e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=1/0	total_cov=58/44
RA	3665	.	1	787269	0	C	A	consensus_score=205.5	frequency=1	major_base=A	major_cov=36/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/37
RA	3666	.	1	787482	0	T	C	consensus_score=243.5	frequency=1	major_base=C	major_cov=30/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/51
RA	3667	.	1	788130	0	T	C	consensus_score=252.1	frequency=1	major_base=C	major_cov=40/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/48
RA	3668	.	1	788368	0	C	T	consensus_score=166.4	frequency=1	major_base=T	major_cov=32/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/30
RA	3669	.	1	788527	0	A	G	consensus_score=250.1	frequency=1	major_base=G	major_cov=47/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/40
RA	3670	.	1	788910	0	C	T	consensus_score=167.8	frequency=1	major_base=T	major_cov=25/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/35
RA	3671	.	1	793589	0	A	G	consensus_score=265.6	frequency=1	major_base=G	major_cov=48/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/45
RA	3672	.	1	796929	0	G	A	consensus_score=111.9	frequency=1	major_base=A	major_cov=19/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/20
RA	3673	.	1	798669	0	A	G	consensus_score=231.7	frequency=1	major_base=G	major_cov=41/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/37
RA	3674	.	1	800724	0	G	T	consensus_score=241.8	frequency=1	major_base=T	major_cov=36/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/49
RA	3675	.	1	800750	0	G	A	consensus_score=238.7	frequency=1	major_base=A	major_cov=40/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/42
RA	3676	.	1	802286	0	C	T	consensus_score=185.3	frequency=1	major_base=T	major_cov=34/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/31
RA	3677	.	1	802912	0	T	G	consensus_score=208.7	frequency=1	major_base=G	major_cov=31/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/41
RA	3678	.	1	804772	0	C	T	consensus_score=224.0	frequency=1	major_base=T	major_cov=37/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/43
RA	3679	.	1	805684	0	A	G	consensus_score=173.7	frequency=1	major_base=G	major_cov=38/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/23
RA	3680	.	1	805998	0	C	T	consensus_score=121.1	frequency=1	major_base=T	major_cov=20/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/23
RA	3681	.	1	806125	0	G	A	consensus_score=38.9	deleted=1	frequency=1	major_base=A	major_cov=8/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/8
RA	3682	.	1	813314	0	A	G	consensus_score=190.4	frequency=1	major_base=G	major_cov=32/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/35
RA	3683	.	1	818234	0	A	G	consensus_score=180.4	frequency=1	major_base=G	major_cov=29/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/35
RA	3684	.	1	819363	0	T	C	consensus_score=174.9	frequency=1	major_base=C	major_cov=29/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/30
RA	3685	.	1	819529	0	G	T	consensus_score=280.6	frequency=1	major_base=T	major_cov=52/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/45
RA	3686	.	1	820354	0	G	A	bias_e_value=0.14024	bias_p_value=6.61451e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=32.8	fisher_strand_p_value=3.21803e-09	frequency=4.375e-01	ks_quality_p_value=1	major_base=G	major_cov=5/22	major_frequency=5.625e-01	minor_base=A	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=4.375e-01	polymorphism_score=21.5	prediction=polymorphism	ref_cov=5/22	total_cov=26/22
RA	3687	.	1	822766	0	G	T	bias_e_value=1740700	bias_p_value=0.821009	consensus_score=236.6	fisher_strand_p_value=0.46988	frequency=1	ks_quality_p_value=0.989477	major_base=T	major_cov=44/38	major_frequency=9.880e-01	minor_base=G	minor_cov=0/1	new_cov=44/38	polymorphism_frequency=9.880e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=0/1	total_cov=44/39
RA	3688	.	1	823999	0	C	T	consensus_score=213.5	frequency=1	major_base=T	major_cov=34/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/38
RA	3689	.	1	825780	0	G	T	bias_e_value=0.180136	bias_p_value=8.49619e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=139.9	fisher_strand_p_value=4.32129e-09	frequency=2.090e-01	ks_quality_p_value=0.968952	major_base=G	major_cov=48/5	major_frequency=7.910e-01	minor_base=T	minor_cov=1/13	new_cov=1/13	polymorphism_frequency=2.090e-01	polymorphism_score=13.9	prediction=polymorphism	ref_cov=48/5	total_cov=49/19
RA	3690	.	1	825884	0	G	A	consensus_score=207.6	frequency=1	major_base=A	major_cov=48/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/24
RA	3691	.	1	826296	0	C	T	consensus_score=226.5	frequency=1	major_base=T	major_cov=36/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/44
RA	3692	.	1	826434	0	C	T	bias_e_value=0.00820043	bias_p_value=3.86777e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=91.3	fisher_strand_p_value=1.64384e-10	frequency=3.043e-01	ks_quality_p_value=1	major_base=C	major_cov=10/38	major_frequency=6.957e-01	minor_base=T	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=3.043e-01	polymorphism_score=13.2	prediction=polymorphism	ref_cov=10/38	total_cov=31/38
RA	3693	.	1	826940	0	A	G	consensus_score=261.0	frequency=1	major_base=G	major_cov=57/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/36
RA	3694	.	1	832498	0	G	A	consensus_score=241.4	frequency=1	major_base=A	major_cov=47/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/37
RA	3695	.	1	834300	0	T	C	consensus_score=211.8	frequency=1	major_base=C	major_cov=38/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/36
RA	3696	.	1	834507	0	C	.	bias_e_value=2120190	bias_p_value=0.999996	consensus_score=303.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.997159	major_base=.	major_cov=37/37	major_frequency=9.737e-01	minor_base=T	minor_cov=1/1	new_cov=37/37	polymorphism_frequency=9.737e-01	polymorphism_score=1.4	prediction=consensus	ref_cov=0/0	total_cov=38/38
RA	3697	.	1	834559	0	C	A	bias_e_value=2116970	bias_p_value=0.99848	consensus_score=264.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.945369	major_base=A	major_cov=44/45	major_frequency=9.889e-01	minor_base=.	minor_cov=0/1	new_cov=44/45	polymorphism_frequency=9.889e-01	polymorphism_score=-3.6	prediction=consensus	ref_cov=0/0	total_cov=44/46
RA	3698	.	1	835172	0	T	C	consensus_score=207.0	frequency=1	major_base=C	major_cov=36/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/33
RA	3699	.	1	836492	0	T	C	consensus_score=183.6	frequency=1	major_base=C	major_cov=27/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/34
RA	3700	.	1	838673	0	C	T	consensus_score=81.5	frequency=1	major_base=T	major_cov=17/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/13
RA	3701	.	1	839371	0	C	T	consensus_score=263.7	frequency=1	major_base=T	major_cov=55/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/39
RA	3702	.	1	839582	0	T	G	consensus_score=246.1	frequency=1	major_base=G	major_cov=37/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/46
RA	3703	.	1	843826	0	T	C	consensus_score=189.7	frequency=1	major_base=C	major_cov=35/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/33
RA	3704	.	1	846251	0	T	C	consensus_score=231.0	frequency=1	major_base=C	major_cov=40/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/41
RA	3705	.	1	847225	0	T	G	consensus_score=225.6	frequency=1	major_base=G	major_cov=35/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/43
RA	3706	.	1	848499	0	T	.	consensus_score=346.4	frequency=1	major_base=.	major_cov=35/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/46
RA	3707	.	1	849077	0	A	G	consensus_score=211.4	frequency=1	major_base=G	major_cov=44/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/30
RA	3708	.	1	849490	0	T	C	consensus_score=227.9	frequency=1	major_base=C	major_cov=41/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/37
RA	3709	.	1	851482	0	A	.	consensus_score=372.3	frequency=1	major_base=.	major_cov=42/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/46
RA	3710	.	1	851597	0	T	G	consensus_score=265.4	frequency=1	major_base=G	major_cov=52/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/42
RA	3711	.	1	853015	0	A	C	bias_e_value=0.0013925	bias_p_value=6.56779e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=130.3	fisher_strand_p_value=2.58803e-11	frequency=3.425e-01	ks_quality_p_value=1	major_base=A	major_cov=37/11	major_frequency=6.575e-01	minor_base=C	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=3.425e-01	polymorphism_score=10.4	prediction=polymorphism	ref_cov=37/11	total_cov=37/36
RA	3712	.	1	856248	0	A	G	consensus_score=286.3	frequency=1	major_base=G	major_cov=46/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/52
RA	3713	.	1	856957	0	G	A	consensus_score=254.0	frequency=1	major_base=A	major_cov=52/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/37
RA	3714	.	1	857985	0	G	A	consensus_score=251.5	frequency=1	major_base=A	major_cov=48/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/40
RA	3715	.	1	862680	0	A	G	consensus_score=255.2	frequency=1	major_base=G	major_cov=45/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/43
RA	3716	.	1	862933	0	G	A	bias_e_value=2120190	bias_p_value=1	consensus_score=345.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999855	major_base=A	major_cov=53/64	major_frequency=9.915e-01	minor_base=G	minor_cov=0/1	new_cov=53/64	polymorphism_frequency=9.915e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=53/65
RA	3717	.	1	863056	0	C	T	consensus_score=297.8	frequency=1	major_base=T	major_cov=39/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/66
RA	3718	.	1	864555	0	C	A	consensus_score=332.5	frequency=1	major_base=A	major_cov=62/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/54
RA	3719	.	1	866938	0	T	C	consensus_score=343.9	frequency=1	major_base=C	major_cov=67/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=67/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/46
RA	3720	.	1	867216	0	C	T	bias_e_value=2120200	bias_p_value=1	consensus_score=334.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=60/58	major_frequency=9.916e-01	minor_base=A	minor_cov=1/0	new_cov=60/58	polymorphism_frequency=9.916e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/58
RA	3721	.	1	868532	0	T	C	consensus_score=364.0	frequency=1	major_base=C	major_cov=55/70	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/70	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/70
RA	3722	.	1	874210	0	C	T	consensus_score=218.3	frequency=1	major_base=T	major_cov=44/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/33
RA	3723	.	1	874480	0	T	G	consensus_score=257.2	frequency=1	major_base=G	major_cov=43/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/44
RA	3724	.	1	875355	0	A	G	consensus_score=266.2	frequency=1	major_base=G	major_cov=42/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/49
RA	3725	.	1	876389	0	A	G	consensus_score=288.0	frequency=1	major_base=G	major_cov=56/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/45
RA	3726	.	1	877589	0	C	T	consensus_score=271.3	frequency=1	major_base=T	major_cov=49/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/45
RA	3727	.	1	877930	1	.	T	consensus_score=205.4	frequency=1	major_base=T	major_cov=26/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/44
RA	3728	.	1	880201	0	A	C	consensus_score=334.2	frequency=1	major_base=C	major_cov=54/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/60
RA	3729	.	1	881645	0	T	G	bias_e_value=0.00520091	bias_p_value=2.45303e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=122.7	fisher_strand_p_value=1.02192e-10	frequency=3.452e-01	ks_quality_p_value=1	major_base=T	major_cov=17/38	major_frequency=6.548e-01	minor_base=G	minor_cov=29/0	new_cov=29/0	polymorphism_frequency=3.452e-01	polymorphism_score=21.2	prediction=polymorphism	ref_cov=17/38	total_cov=51/38
RA	3730	.	1	882226	0	C	T	consensus_score=124.5	frequency=1	major_base=T	major_cov=17/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/26
RA	3731	.	1	882296	0	G	C	consensus_score=161.7	frequency=1	major_base=C	major_cov=25/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/29
RA	3732	.	1	882312	0	C	T	consensus_score=169.4	frequency=1	major_base=T	major_cov=23/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/34
RA	3733	.	1	882832	0	C	T	consensus_score=364.1	frequency=1	major_base=T	major_cov=61/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/60
RA	3734	.	1	884303	0	G	T	consensus_score=266.9	frequency=1	major_base=T	major_cov=41/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/55
RA	3735	.	1	884858	0	G	A	consensus_score=164.9	frequency=1	major_base=A	major_cov=36/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/23
RA	3736	.	1	885599	0	G	A	consensus_score=264.1	frequency=1	major_base=A	major_cov=49/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/44
RA	3737	.	1	889052	0	T	C	consensus_score=203.2	frequency=1	major_base=C	major_cov=42/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/25
RA	3738	.	1	890834	0	A	G	consensus_score=165.9	frequency=1	major_base=G	major_cov=28/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/27
RA	3739	.	1	891673	0	T	C	consensus_score=304.1	frequency=1	major_base=C	major_cov=54/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/48
RA	3740	.	1	894165	0	C	.	consensus_score=62.3	frequency=1	major_base=.	major_cov=8/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/8
RA	3741	.	1	894166	0	T	A	consensus_score=42.9	frequency=1	major_base=A	major_cov=8/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/8
RA	3742	.	1	894835	0	T	C	consensus_score=204.6	frequency=1	major_base=C	major_cov=46/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/24
RA	3743	.	1	894852	0	G	A	bias_e_value=2120200	bias_p_value=1	consensus_score=187.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=43/25	major_frequency=9.855e-01	minor_base=G	minor_cov=1/0	new_cov=43/25	polymorphism_frequency=9.855e-01	polymorphism_score=-6.8	prediction=consensus	ref_cov=1/0	total_cov=44/25
RA	3744	.	1	894870	0	C	A	consensus_score=200.8	frequency=1	major_base=A	major_cov=41/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/27
RA	3745	.	1	894880	0	A	G	consensus_score=207.2	frequency=1	major_base=G	major_cov=41/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/28
RA	3746	.	1	894892	0	A	G	consensus_score=185.1	frequency=1	major_base=G	major_cov=41/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/25
RA	3747	.	1	894913	0	C	T	consensus_score=141.6	frequency=1	major_base=T	major_cov=34/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/19
RA	3748	.	1	894915	0	G	A	consensus_score=148.8	frequency=1	major_base=A	major_cov=34/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/19
RA	3749	.	1	894916	0	G	T	consensus_score=148.6	frequency=1	major_base=T	major_cov=34/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/19
RA	3750	.	1	894920	0	A	G	consensus_score=158.8	frequency=1	major_base=G	major_cov=34/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/19
RA	3751	.	1	894922	0	T	G	consensus_score=158.6	frequency=1	major_base=G	major_cov=34/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/19
RA	3752	.	1	894925	0	G	A	consensus_score=149.5	frequency=1	major_base=A	major_cov=34/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/19
RA	3753	.	1	894931	0	C	T	consensus_score=192.9	frequency=1	major_base=T	major_cov=40/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/26
RA	3754	.	1	894934	0	A	G	consensus_score=195.2	frequency=1	major_base=G	major_cov=40/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/26
RA	3755	.	1	894951	0	C	T	consensus_score=206.7	frequency=1	major_base=T	major_cov=43/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/29
RA	3756	.	1	894973	0	T	C	consensus_score=227.6	frequency=1	major_base=C	major_cov=43/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/32
RA	3757	.	1	895042	0	G	A	consensus_score=199.1	frequency=1	major_base=A	major_cov=36/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/35
RA	3758	.	1	895046	0	T	C	consensus_score=202.3	frequency=1	major_base=C	major_cov=36/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/35
RA	3759	.	1	895049	0	C	T	consensus_score=199.5	frequency=1	major_base=T	major_cov=36/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/35
RA	3760	.	1	895072	0	C	T	consensus_score=195.8	frequency=1	major_base=T	major_cov=31/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/36
RA	3761	.	1	895093	0	A	G	consensus_score=186.4	frequency=1	major_base=G	major_cov=33/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/32
RA	3762	.	1	895096	0	C	T	consensus_score=182.8	frequency=1	major_base=T	major_cov=33/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/32
RA	3763	.	1	895108	0	C	G	consensus_score=198.7	frequency=1	major_base=G	major_cov=32/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/34
RA	3764	.	1	895124	0	T	C	consensus_score=207.9	frequency=1	major_base=C	major_cov=34/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/36
RA	3765	.	1	895147	0	T	C	consensus_score=209.7	frequency=1	major_base=C	major_cov=39/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/34
RA	3766	.	1	895151	0	G	A	consensus_score=216.3	frequency=1	major_base=A	major_cov=39/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/34
RA	3767	.	1	895216	0	G	A	consensus_score=233.5	frequency=1	major_base=A	major_cov=44/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/38
RA	3768	.	1	895277	0	T	G	consensus_score=199.4	frequency=1	major_base=G	major_cov=38/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/34
RA	3769	.	1	895284	0	T	A	consensus_score=200.0	frequency=1	major_base=A	major_cov=36/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/33
RA	3770	.	1	895306	0	T	A	bias_e_value=2120190	bias_p_value=1	consensus_score=195.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=35/36	major_frequency=9.861e-01	minor_base=C	minor_cov=0/1	new_cov=35/36	polymorphism_frequency=9.861e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/37
RA	3771	.	1	895336	0	C	T	consensus_score=183.5	frequency=1	major_base=T	major_cov=34/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/33
RA	3772	.	1	895342	0	T	.	bias_e_value=57680.4	bias_p_value=0.0272053	consensus_reject=FREQUENCY_CUTOFF	consensus_score=143.4	fisher_strand_p_value=0.00420366	frequency=2.388e-01	ks_quality_p_value=1	major_base=T	major_cov=31/20	major_frequency=7.612e-01	minor_base=.	minor_cov=3/13	new_cov=3/13	polymorphism_frequency=2.388e-01	polymorphism_score=41.3	prediction=polymorphism	ref_cov=31/20	total_cov=34/33
RA	3773	.	1	895343	0	T	.	bias_e_value=1907170	bias_p_value=0.899524	consensus_score=47.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.586646	major_base=.	major_cov=3/12	major_frequency=9.375e-01	minor_base=T	minor_cov=0/1	new_cov=3/12	polymorphism_frequency=9.375e-01	polymorphism_score=-2.5	prediction=consensus	ref_cov=0/1	total_cov=3/13
RA	3774	.	1	895344	0	A	.	bias_e_value=2120200	bias_p_value=1	consensus_score=48.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=.	major_cov=3/12	major_frequency=9.375e-01	minor_base=A	minor_cov=0/1	new_cov=3/12	polymorphism_frequency=9.375e-01	polymorphism_score=-3.3	prediction=consensus	ref_cov=0/1	total_cov=3/13
RA	3775	.	1	895347	0	T	.	consensus_score=259.3	frequency=1	major_base=.	major_cov=30/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/31
RA	3776	.	1	895348	0	T	.	consensus_score=259.3	frequency=1	major_base=.	major_cov=30/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/31
RA	3777	.	1	895356	0	C	T	consensus_score=144.0	frequency=1	major_base=T	major_cov=24/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/30
RA	3778	.	1	895361	0	A	G	consensus_score=175.1	frequency=1	major_base=G	major_cov=28/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/31
RA	3779	.	1	895366	0	C	T	consensus_score=164.3	frequency=1	major_base=T	major_cov=28/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/31
RA	3780	.	1	895378	0	A	G	consensus_score=155.0	frequency=1	major_base=G	major_cov=25/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/30
RA	3781	.	1	895394	0	T	C	consensus_score=122.3	frequency=1	major_base=C	major_cov=20/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/28
RA	3782	.	1	895399	0	A	G	consensus_score=132.6	frequency=1	major_base=G	major_cov=20/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/28
RA	3783	.	1	895401	0	G	A	consensus_score=136.5	frequency=1	major_base=A	major_cov=20/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/28
RA	3784	.	1	895410	0	C	A	consensus_score=132.3	frequency=1	major_base=A	major_cov=21/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/28
RA	3785	.	1	895458	0	G	A	consensus_score=78.8	frequency=1	major_base=A	major_cov=18/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/17
RA	3786	.	1	895487	0	C	T	consensus_score=134.0	frequency=1	major_base=T	major_cov=28/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/18
RA	3787	.	1	895490	0	G	C	consensus_score=129.8	frequency=1	major_base=C	major_cov=28/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/18
RA	3788	.	1	895520	0	C	T	consensus_score=133.7	frequency=1	major_base=T	major_cov=29/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/19
RA	3789	.	1	895521	0	A	G	consensus_score=144.0	frequency=1	major_base=G	major_cov=29/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/19
RA	3790	.	1	895528	1	.	G	consensus_score=125.4	frequency=1	major_base=G	major_cov=29/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/16
RA	3791	.	1	895533	0	T	.	consensus_score=186.1	frequency=1	major_base=.	major_cov=29/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/16
RA	3792	.	1	895534	0	T	C	consensus_score=127.6	frequency=1	major_base=C	major_cov=29/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/16
RA	3793	.	1	895553	0	C	T	consensus_score=174.9	frequency=1	major_base=T	major_cov=47/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/15
RA	3794	.	1	895563	0	C	A	consensus_score=178.4	frequency=1	major_base=A	major_cov=48/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/15
RA	3795	.	1	895579	0	T	C	consensus_score=186.3	frequency=1	major_base=C	major_cov=46/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/19
RA	3796	.	1	895613	0	A	G	consensus_score=210.2	frequency=1	major_base=G	major_cov=48/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/20
RA	3797	.	1	895631	0	G	A	consensus_score=192.2	frequency=1	major_base=A	major_cov=47/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/23
RA	3798	.	1	895668	0	C	T	consensus_score=201.9	frequency=1	major_base=T	major_cov=46/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/25
RA	3799	.	1	895685	0	A	G	consensus_score=206.4	frequency=1	major_base=G	major_cov=44/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/26
RA	3800	.	1	895709	0	T	C	consensus_score=176.0	frequency=1	major_base=C	major_cov=37/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/26
RA	3801	.	1	895710	0	A	G	consensus_score=176.8	frequency=1	major_base=G	major_cov=37/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/26
RA	3802	.	1	895721	0	C	T	consensus_score=188.8	frequency=1	major_base=T	major_cov=38/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/26
RA	3803	.	1	895736	0	G	C	consensus_score=188.2	frequency=1	major_base=C	major_cov=38/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/26
RA	3804	.	1	895737	0	C	T	consensus_score=182.8	frequency=1	major_base=T	major_cov=38/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/26
RA	3805	.	1	895767	0	T	G	consensus_score=193.3	frequency=1	major_base=G	major_cov=37/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/29
RA	3806	.	1	895785	0	G	C	bias_e_value=2120200	bias_p_value=1	consensus_score=171.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=32/27	major_frequency=9.833e-01	minor_base=A	minor_cov=1/0	new_cov=32/27	polymorphism_frequency=9.833e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/27
RA	3807	.	1	895787	0	G	A	bias_e_value=2120190	bias_p_value=1	consensus_score=166.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999435	major_base=A	major_cov=32/27	major_frequency=9.833e-01	minor_base=T	minor_cov=1/0	new_cov=32/27	polymorphism_frequency=9.833e-01	polymorphism_score=-5.8	prediction=consensus	ref_cov=0/0	total_cov=33/27
RA	3808	.	1	895796	0	T	C	consensus_score=153.5	frequency=1	major_base=C	major_cov=25/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/29
RA	3809	.	1	895811	0	T	G	consensus_score=152.4	frequency=1	major_base=G	major_cov=24/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/29
RA	3810	.	1	895907	0	C	T	consensus_score=267.0	frequency=1	major_base=T	major_cov=42/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/48
RA	3811	.	1	895919	0	T	C	consensus_score=255.6	frequency=1	major_base=C	major_cov=43/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/45
RA	3812	.	1	895931	0	C	T	bias_e_value=1760390	bias_p_value=0.830296	consensus_score=252.3	fisher_strand_p_value=0.477273	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=41/46	major_frequency=9.886e-01	minor_base=C	minor_cov=1/0	new_cov=41/46	polymorphism_frequency=9.886e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=42/46
RA	3813	.	1	895940	0	G	T	consensus_score=248.8	frequency=1	major_base=T	major_cov=41/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/47
RA	3814	.	1	895955	0	C	T	bias_e_value=650471	bias_p_value=0.306798	consensus_score=225.9	fisher_strand_p_value=0.0900343	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=37/48	major_frequency=9.659e-01	minor_base=G	minor_cov=3/0	new_cov=37/48	polymorphism_frequency=9.659e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/48
RA	3815	.	1	895967	0	T	C	consensus_score=261.1	frequency=1	major_base=C	major_cov=40/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/51
RA	3816	.	1	895980	0	G	A	consensus_score=262.3	frequency=1	major_base=A	major_cov=41/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/50
RA	3817	.	1	895985	0	A	G	consensus_score=267.1	frequency=1	major_base=G	major_cov=41/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/51
RA	3818	.	1	896009	0	C	T	bias_e_value=1678560	bias_p_value=0.791699	consensus_score=238.8	fisher_strand_p_value=0.428571	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=35/48	major_frequency=9.881e-01	minor_base=G	minor_cov=1/0	new_cov=35/48	polymorphism_frequency=9.881e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/48
RA	3819	.	1	896069	0	C	T	bias_e_value=1703430	bias_p_value=0.80343	consensus_score=182.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.442688	major_base=T	major_cov=27/43	major_frequency=9.859e-01	minor_base=A	minor_cov=0/1	new_cov=27/43	polymorphism_frequency=9.859e-01	polymorphism_score=-3.6	prediction=consensus	ref_cov=0/0	total_cov=27/44
RA	3820	.	1	896099	0	C	T	consensus_score=146.8	frequency=1	major_base=T	major_cov=24/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/28
RA	3821	.	1	896108	0	C	T	consensus_score=124.9	frequency=1	major_base=T	major_cov=24/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/22
RA	3822	.	1	896113	0	T	C	consensus_score=111.5	frequency=1	major_base=C	major_cov=21/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/18
RA	3823	.	1	896126	0	G	A	consensus_score=113.6	frequency=1	major_base=A	major_cov=25/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/16
RA	3824	.	1	896140	0	G	C	consensus_score=104.1	frequency=1	major_base=C	major_cov=23/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/12
RA	3825	.	1	896141	0	C	T	consensus_score=94.8	frequency=1	major_base=T	major_cov=23/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/12
RA	3826	.	1	896154	0	C	T	consensus_score=106.3	frequency=1	major_base=T	major_cov=26/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/13
RA	3827	.	1	896162	0	C	T	consensus_score=97.7	frequency=1	major_base=T	major_cov=25/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/11
RA	3828	.	1	896165	0	T	C	consensus_score=106.2	frequency=1	major_base=C	major_cov=25/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/11
RA	3829	.	1	896166	0	G	A	consensus_score=97.1	frequency=1	major_base=A	major_cov=25/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/11
RA	3830	.	1	896171	0	C	T	consensus_score=130.9	frequency=1	major_base=T	major_cov=30/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/18
RA	3831	.	1	896191	0	G	A	consensus_score=143.0	frequency=1	major_base=A	major_cov=31/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/18
RA	3832	.	1	896202	0	T	C	consensus_score=147.7	frequency=1	major_base=C	major_cov=33/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/18
RA	3833	.	1	896204	0	C	T	consensus_score=142.0	frequency=1	major_base=T	major_cov=33/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/18
RA	3834	.	1	896228	0	G	A	consensus_score=154.5	frequency=1	major_base=A	major_cov=35/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/18
RA	3835	.	1	896240	0	T	C	consensus_score=158.2	frequency=1	major_base=C	major_cov=39/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/17
RA	3836	.	1	896245	0	T	C	consensus_score=155.4	frequency=1	major_base=C	major_cov=38/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/16
RA	3837	.	1	896246	0	G	A	consensus_score=149.6	frequency=1	major_base=A	major_cov=38/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/16
RA	3838	.	1	896258	0	C	T	consensus_score=194.0	frequency=1	major_base=T	major_cov=46/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/21
RA	3839	.	1	896264	0	A	G	consensus_score=195.9	frequency=1	major_base=G	major_cov=46/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/20
RA	3840	.	1	896266	0	T	C	consensus_score=194.5	frequency=1	major_base=C	major_cov=46/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/20
RA	3841	.	1	896270	0	T	C	consensus_score=193.4	frequency=1	major_base=C	major_cov=46/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/20
RA	3842	.	1	896321	0	C	T	consensus_score=187.5	frequency=1	major_base=T	major_cov=44/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/21
RA	3843	.	1	896336	0	C	T	consensus_score=181.8	frequency=1	major_base=T	major_cov=42/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/21
RA	3844	.	1	896339	0	A	G	consensus_score=179.5	frequency=1	major_base=G	major_cov=42/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/21
RA	3845	.	1	896357	0	C	T	consensus_score=200.3	frequency=1	major_base=T	major_cov=45/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/24
RA	3846	.	1	896363	0	T	C	consensus_score=198.9	frequency=1	major_base=C	major_cov=44/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/24
RA	3847	.	1	896379	0	T	C	consensus_score=208.8	frequency=1	major_base=C	major_cov=48/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/25
RA	3848	.	1	896395	0	C	T	consensus_score=228.3	frequency=1	major_base=T	major_cov=49/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/30
RA	3849	.	1	896417	0	G	T	consensus_score=206.7	frequency=1	major_base=T	major_cov=47/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/25
RA	3850	.	1	896434	0	C	T	consensus_score=174.6	frequency=1	major_base=T	major_cov=42/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/22
RA	3851	.	1	896435	0	A	G	consensus_score=182.6	frequency=1	major_base=G	major_cov=42/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/22
RA	3852	.	1	896441	0	C	T	consensus_score=179.9	frequency=1	major_base=T	major_cov=42/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/22
RA	3853	.	1	896444	0	C	T	consensus_score=177.9	frequency=1	major_base=T	major_cov=42/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/22
RA	3854	.	1	896447	0	C	T	consensus_score=177.6	frequency=1	major_base=T	major_cov=42/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/22
RA	3855	.	1	896454	0	C	T	consensus_score=190.2	frequency=1	major_base=T	major_cov=45/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/22
RA	3856	.	1	896466	0	A	G	consensus_score=206.5	frequency=1	major_base=G	major_cov=45/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/29
RA	3857	.	1	896524	0	G	A	consensus_score=218.2	frequency=1	major_base=A	major_cov=46/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/31
RA	3858	.	1	896525	0	G	A	consensus_score=217.3	frequency=1	major_base=A	major_cov=46/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/31
RA	3859	.	1	896532	0	A	G	consensus_score=230.4	frequency=1	major_base=G	major_cov=46/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/31
RA	3860	.	1	896537	0	C	T	consensus_score=220.1	frequency=1	major_base=T	major_cov=46/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/31
RA	3861	.	1	896550	0	C	T	consensus_score=235.9	frequency=1	major_base=T	major_cov=49/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/34
RA	3862	.	1	896553	0	T	C	consensus_score=241.8	frequency=1	major_base=C	major_cov=49/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/34
RA	3863	.	1	896559	0	T	C	consensus_score=228.0	frequency=1	major_base=C	major_cov=46/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/34
RA	3864	.	1	896561	0	T	C	consensus_score=226.1	frequency=1	major_base=C	major_cov=46/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/34
RA	3865	.	1	896567	0	C	G	consensus_score=210.4	frequency=1	major_base=G	major_cov=42/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/32
RA	3866	.	1	896570	0	T	C	consensus_score=214.4	frequency=1	major_base=C	major_cov=42/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/32
RA	3867	.	1	896578	0	A	G	consensus_score=231.6	frequency=1	major_base=G	major_cov=43/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/34
RA	3868	.	1	896587	0	A	C	consensus_score=217.4	frequency=1	major_base=C	major_cov=38/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/37
RA	3869	.	1	896602	0	A	T	consensus_score=205.8	frequency=1	major_base=T	major_cov=35/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/39
RA	3870	.	1	896606	0	C	T	consensus_score=209.8	frequency=1	major_base=T	major_cov=35/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/39
RA	3871	.	1	896625	0	G	A	consensus_score=196.0	frequency=1	major_base=A	major_cov=30/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/39
RA	3872	.	1	896654	0	T	C	consensus_score=165.8	frequency=1	major_base=C	major_cov=25/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/33
RA	3873	.	1	896656	0	A	G	consensus_score=167.3	frequency=1	major_base=G	major_cov=25/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/33
RA	3874	.	1	896657	0	C	T	consensus_score=163.5	frequency=1	major_base=T	major_cov=25/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/33
RA	3875	.	1	896660	0	G	A	consensus_score=163.3	frequency=1	major_base=A	major_cov=25/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/33
RA	3876	.	1	896687	0	C	T	consensus_score=165.2	frequency=1	major_base=T	major_cov=25/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/31
RA	3877	.	1	896696	0	A	C	consensus_score=165.2	frequency=1	major_base=C	major_cov=25/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/31
RA	3878	.	1	896711	0	G	A	consensus_score=142.6	frequency=1	major_base=A	major_cov=24/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/27
RA	3879	.	1	896726	0	A	G	consensus_score=139.4	frequency=1	major_base=G	major_cov=23/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/24
RA	3880	.	1	896735	0	A	G	consensus_score=125.4	frequency=1	major_base=G	major_cov=21/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/22
RA	3881	.	1	896737	0	C	A	consensus_score=121.6	frequency=1	major_base=A	major_cov=21/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/22
RA	3882	.	1	896738	0	G	A	consensus_score=121.8	frequency=1	major_base=A	major_cov=21/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/22
RA	3883	.	1	896745	0	A	C	consensus_score=126.8	frequency=1	major_base=C	major_cov=21/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/22
RA	3884	.	1	896750	0	C	T	consensus_score=119.7	frequency=1	major_base=T	major_cov=21/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/22
RA	3885	.	1	896767	0	C	T	consensus_score=75.5	frequency=1	major_base=T	major_cov=15/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/13
RA	3886	.	1	896786	0	G	T	consensus_score=87.4	frequency=1	major_base=T	major_cov=17/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/15
RA	3887	.	1	896802	0	T	G	consensus_score=89.7	frequency=1	major_base=G	major_cov=20/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/12
RA	3888	.	1	896806	0	G	C	consensus_score=86.2	frequency=1	major_base=C	major_cov=19/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/12
RA	3889	.	1	896809	0	T	C	consensus_score=86.2	frequency=1	major_base=C	major_cov=19/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/12
RA	3890	.	1	896810	0	C	G	consensus_score=87.2	frequency=1	major_base=G	major_cov=19/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/12
RA	3891	.	1	896819	0	C	G	consensus_score=84.1	frequency=1	major_base=G	major_cov=19/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/11
RA	3892	.	1	896825	0	G	A	consensus_score=75.9	frequency=1	major_base=A	major_cov=18/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/10
RA	3893	.	1	896826	0	C	T	consensus_score=77.7	frequency=1	major_base=T	major_cov=18/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/10
RA	3894	.	1	896828	0	A	G	consensus_score=76.2	frequency=1	major_base=G	major_cov=18/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/10
RA	3895	.	1	896843	0	C	T	consensus_score=80.6	frequency=1	major_base=T	major_cov=15/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/14
RA	3896	.	1	896845	0	A	G	consensus_score=80.2	frequency=1	major_base=G	major_cov=15/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/14
RA	3897	.	1	896850	0	G	A	consensus_score=84.4	frequency=1	major_base=A	major_cov=16/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/15
RA	3898	.	1	896864	0	A	G	consensus_score=93.1	frequency=1	major_base=G	major_cov=15/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/18
RA	3899	.	1	896881	0	C	T	consensus_score=88.5	frequency=1	major_base=T	major_cov=13/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/19
RA	3900	.	1	896882	0	G	A	consensus_score=88.1	frequency=1	major_base=A	major_cov=13/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/19
RA	3901	.	1	896897	0	C	T	consensus_score=99.9	frequency=1	major_base=T	major_cov=15/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/21
RA	3902	.	1	896912	0	T	C	consensus_score=100.5	frequency=1	major_base=C	major_cov=14/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/23
RA	3903	.	1	896932	0	A	C	consensus_score=149.2	frequency=1	major_base=C	major_cov=24/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/26
RA	3904	.	1	896939	0	G	T	consensus_score=145.5	frequency=1	major_base=T	major_cov=24/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/26
RA	3905	.	1	896940	0	A	G	consensus_score=147.4	frequency=1	major_base=G	major_cov=24/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/26
RA	3906	.	1	896942	0	T	C	consensus_score=140.6	frequency=1	major_base=C	major_cov=24/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/26
RA	3907	.	1	896944	0	C	T	consensus_score=135.8	frequency=1	major_base=T	major_cov=24/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/26
RA	3908	.	1	896954	0	T	C	consensus_score=154.7	frequency=1	major_base=C	major_cov=26/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/26
RA	3909	.	1	896966	0	G	C	consensus_score=173.5	frequency=1	major_base=C	major_cov=32/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/28
RA	3910	.	1	896969	0	C	G	consensus_score=171.5	frequency=1	major_base=G	major_cov=32/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/28
RA	3911	.	1	896981	0	C	T	consensus_score=182.7	frequency=1	major_base=T	major_cov=34/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/31
RA	3912	.	1	896987	0	A	G	consensus_score=193.1	frequency=1	major_base=G	major_cov=36/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/31
RA	3913	.	1	896990	0	C	T	consensus_score=192.8	frequency=1	major_base=T	major_cov=36/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/31
RA	3914	.	1	897020	0	G	A	consensus_score=231.0	frequency=1	major_base=A	major_cov=40/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/40
RA	3915	.	1	897021	0	A	G	consensus_score=236.0	frequency=1	major_base=G	major_cov=40/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/40
RA	3916	.	1	897026	0	A	C	consensus_score=245.8	frequency=1	major_base=C	major_cov=42/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/44
RA	3917	.	1	897041	0	G	T	consensus_score=247.1	frequency=1	major_base=T	major_cov=39/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/44
RA	3918	.	1	897066	0	T	C	consensus_score=242.9	frequency=1	major_base=C	major_cov=41/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/42
RA	3919	.	1	897107	0	T	C	consensus_score=236.5	frequency=1	major_base=C	major_cov=40/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/41
RA	3920	.	1	897141	0	A	C	consensus_score=239.2	frequency=1	major_base=C	major_cov=40/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/42
RA	3921	.	1	897150	0	C	T	consensus_score=225.2	frequency=1	major_base=T	major_cov=39/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/41
RA	3922	.	1	897155	0	C	T	consensus_score=203.3	frequency=1	major_base=T	major_cov=32/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/37
RA	3923	.	1	897158	0	T	C	consensus_score=201.0	frequency=1	major_base=C	major_cov=32/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/37
RA	3924	.	1	897161	0	C	T	consensus_score=196.7	frequency=1	major_base=T	major_cov=32/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/37
RA	3925	.	1	897171	0	A	G	consensus_score=209.9	frequency=1	major_base=G	major_cov=33/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/39
RA	3926	.	1	897192	0	G	A	consensus_score=214.4	frequency=1	major_base=A	major_cov=33/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/42
RA	3927	.	1	897199	0	A	G	consensus_score=230.6	frequency=1	major_base=G	major_cov=35/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/44
RA	3928	.	1	897210	0	T	A	consensus_score=207.9	frequency=1	major_base=A	major_cov=30/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/41
RA	3929	.	1	897242	0	C	T	consensus_score=185.5	frequency=1	major_base=T	major_cov=28/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/38
RA	3930	.	1	897257	0	A	C	consensus_score=200.7	frequency=1	major_base=C	major_cov=31/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/37
RA	3931	.	1	897293	0	G	A	consensus_score=179.5	frequency=1	major_base=A	major_cov=32/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/33
RA	3932	.	1	897312	0	C	T	consensus_score=178.1	frequency=1	major_base=T	major_cov=28/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/36
RA	3933	.	1	897317	0	G	A	consensus_score=182.6	frequency=1	major_base=A	major_cov=28/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/37
RA	3934	.	1	897320	0	G	A	consensus_score=185.6	frequency=1	major_base=A	major_cov=28/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/37
RA	3935	.	1	897325	0	A	G	consensus_score=175.8	frequency=1	major_base=G	major_cov=26/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/35
RA	3936	.	1	897329	0	G	A	consensus_score=178.8	frequency=1	major_base=A	major_cov=26/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/35
RA	3937	.	1	897330	0	G	A	consensus_score=172.1	frequency=1	major_base=A	major_cov=26/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/35
RA	3938	.	1	897333	0	T	C	consensus_score=181.5	frequency=1	major_base=C	major_cov=26/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/35
RA	3939	.	1	897341	0	T	C	consensus_score=192.2	frequency=1	major_base=C	major_cov=29/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/35
RA	3940	.	1	897353	0	T	G	consensus_score=199.1	frequency=1	major_base=G	major_cov=37/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/33
RA	3941	.	1	897362	0	G	A	consensus_score=168.8	frequency=1	major_base=A	major_cov=34/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/26
RA	3942	.	1	897365	0	C	A	consensus_score=170.4	frequency=1	major_base=A	major_cov=34/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/26
RA	3943	.	1	897367	0	A	G	consensus_score=173.2	frequency=1	major_base=G	major_cov=34/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/26
RA	3944	.	1	897373	0	G	A	consensus_score=169.3	frequency=1	major_base=A	major_cov=34/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/26
RA	3945	.	1	897374	0	T	G	consensus_score=172.5	frequency=1	major_base=G	major_cov=34/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/26
RA	3946	.	1	897377	0	C	T	consensus_score=168.4	frequency=1	major_base=T	major_cov=34/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/26
RA	3947	.	1	897380	0	C	T	consensus_score=170.0	frequency=1	major_base=T	major_cov=34/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/26
RA	3948	.	1	897393	0	A	C	consensus_score=213.5	frequency=1	major_base=C	major_cov=37/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/36
RA	3949	.	1	897401	0	G	A	bias_e_value=2120190	bias_p_value=1	consensus_score=193.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=33/36	major_frequency=9.857e-01	minor_base=G	minor_cov=0/1	new_cov=33/36	polymorphism_frequency=9.857e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=33/37
RA	3950	.	1	897416	0	T	C	consensus_score=189.6	frequency=1	major_base=C	major_cov=33/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/35
RA	3951	.	1	897418	0	C	T	consensus_score=201.5	frequency=1	major_base=T	major_cov=33/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/35
RA	3952	.	1	897419	0	A	G	consensus_score=201.3	frequency=1	major_base=G	major_cov=33/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/35
RA	3953	.	1	897422	0	T	C	consensus_score=192.3	frequency=1	major_base=C	major_cov=33/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/35
RA	3954	.	1	897425	0	T	C	consensus_score=199.2	frequency=1	major_base=C	major_cov=33/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/35
RA	3955	.	1	897488	0	A	T	consensus_score=189.3	frequency=1	major_base=T	major_cov=37/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/29
RA	3956	.	1	897489	0	C	T	consensus_score=193.5	frequency=1	major_base=T	major_cov=37/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/29
RA	3957	.	1	897515	0	A	G	consensus_score=188.3	frequency=1	major_base=G	major_cov=35/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/29
RA	3958	.	1	897533	0	G	A	consensus_score=176.8	frequency=1	major_base=A	major_cov=35/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/26
RA	3959	.	1	897536	0	A	G	consensus_score=176.0	frequency=1	major_base=G	major_cov=35/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/26
RA	3960	.	1	897559	0	G	.	bias_e_value=2120200	bias_p_value=1	consensus_score=257.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=.	major_cov=35/27	major_frequency=9.841e-01	minor_base=G	minor_cov=1/0	new_cov=35/27	polymorphism_frequency=9.841e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=1/0	total_cov=36/27
RA	3961	.	1	897561	1	.	A	bias_e_value=2120200	bias_p_value=1	consensus_score=172.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=35/27	major_frequency=9.841e-01	minor_base=.	minor_cov=1/0	new_cov=35/27	polymorphism_frequency=9.841e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=1/0	total_cov=36/27
RA	3962	.	1	897587	0	C	T	consensus_score=166.3	frequency=1	major_base=T	major_cov=34/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/25
RA	3963	.	1	897617	0	G	A	consensus_score=154.6	frequency=1	major_base=A	major_cov=34/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/18
RA	3964	.	1	897623	0	G	C	consensus_score=151.6	frequency=1	major_base=C	major_cov=34/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/18
RA	3965	.	1	897669	0	G	A	consensus_score=159.3	frequency=1	major_base=A	major_cov=34/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/20
RA	3966	.	1	897680	0	A	G	consensus_score=147.7	frequency=1	major_base=G	major_cov=33/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/19
RA	3967	.	1	897701	0	A	G	consensus_score=170.3	frequency=1	major_base=G	major_cov=37/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/22
RA	3968	.	1	897707	0	A	G	consensus_score=181.3	frequency=1	major_base=G	major_cov=40/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/24
RA	3969	.	1	897713	0	C	T	consensus_score=172.5	frequency=1	major_base=T	major_cov=37/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/23
RA	3970	.	1	897719	0	G	A	consensus_score=168.4	frequency=1	major_base=A	major_cov=34/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/23
RA	3971	.	1	897727	0	G	A	consensus_score=169.4	frequency=1	major_base=A	major_cov=34/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/26
RA	3972	.	1	897731	0	A	G	consensus_score=159.6	frequency=1	major_base=G	major_cov=31/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/26
RA	3973	.	1	897748	0	A	G	consensus_score=198.3	frequency=1	major_base=G	major_cov=36/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/33
RA	3974	.	1	897755	0	G	A	consensus_score=202.6	frequency=1	major_base=A	major_cov=35/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/34
RA	3975	.	1	897770	0	T	C	consensus_score=208.4	frequency=1	major_base=C	major_cov=35/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/35
RA	3976	.	1	897774	0	C	T	consensus_score=203.1	frequency=1	major_base=T	major_cov=34/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/35
RA	3977	.	1	897785	0	G	A	consensus_score=199.3	frequency=1	major_base=A	major_cov=36/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/34
RA	3978	.	1	897803	0	G	A	consensus_score=211.5	frequency=1	major_base=A	major_cov=33/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/40
RA	3979	.	1	897811	0	T	C	consensus_score=198.8	frequency=1	major_base=C	major_cov=31/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/39
RA	3980	.	1	897817	0	C	G	consensus_score=195.2	frequency=1	major_base=G	major_cov=30/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/38
RA	3981	.	1	897843	0	A	G	consensus_score=198.3	frequency=1	major_base=G	major_cov=31/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/37
RA	3982	.	1	897848	0	T	C	consensus_score=171.0	frequency=1	major_base=C	major_cov=24/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/37
RA	3983	.	1	897849	0	T	C	consensus_score=169.9	frequency=1	major_base=C	major_cov=24/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/37
RA	3984	.	1	897855	0	T	G	consensus_score=169.1	frequency=1	major_base=G	major_cov=24/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/37
RA	3985	.	1	897857	0	C	T	consensus_score=164.3	frequency=1	major_base=T	major_cov=24/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/37
RA	3986	.	1	897884	0	G	A	consensus_score=187.7	frequency=1	major_base=A	major_cov=27/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/40
RA	3987	.	1	897898	0	C	T	consensus_score=186.4	frequency=1	major_base=T	major_cov=28/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/39
RA	3988	.	1	897927	0	T	G	consensus_score=224.4	frequency=1	major_base=G	major_cov=32/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/43
RA	3989	.	1	897938	0	G	A	consensus_score=215.8	frequency=1	major_base=A	major_cov=31/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/43
RA	3990	.	1	897940	0	G	A	consensus_score=209.8	frequency=1	major_base=A	major_cov=31/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/43
RA	3991	.	1	897957	0	A	G	consensus_score=222.8	frequency=1	major_base=G	major_cov=30/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/46
RA	3992	.	1	897971	0	A	G	consensus_score=217.5	frequency=1	major_base=G	major_cov=34/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/40
RA	3993	.	1	897974	0	C	T	consensus_score=208.8	frequency=1	major_base=T	major_cov=34/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/40
RA	3994	.	1	897990	0	C	A	consensus_score=198.5	frequency=1	major_base=A	major_cov=33/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/37
RA	3995	.	1	898005	0	C	T	bias_e_value=1783470	bias_p_value=0.841182	consensus_score=178.7	fisher_strand_p_value=0.492308	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=31/33	major_frequency=9.697e-01	minor_base=C	minor_cov=2/0	new_cov=31/33	polymorphism_frequency=9.697e-01	polymorphism_score=NA	prediction=consensus	ref_cov=2/0	total_cov=33/33
RA	3996	.	1	898008	0	A	G	consensus_score=186.3	frequency=1	major_base=G	major_cov=33/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/33
RA	3997	.	1	898009	0	A	C	consensus_score=196.8	frequency=1	major_base=C	major_cov=33/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/33
RA	3998	.	1	898055	0	C	T	consensus_score=197.2	frequency=1	major_base=T	major_cov=31/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/39
RA	3999	.	1	898075	0	G	A	consensus_score=215.5	frequency=1	major_base=A	major_cov=33/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/43
RA	4000	.	1	898087	1	.	T	consensus_score=215.7	frequency=1	major_base=T	major_cov=30/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/44
RA	4001	.	1	898103	0	C	A	consensus_score=202.0	frequency=1	major_base=A	major_cov=31/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/40
RA	4002	.	1	898108	0	G	A	consensus_score=204.9	frequency=1	major_base=A	major_cov=32/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/40
RA	4003	.	1	898119	0	C	T	consensus_score=206.4	frequency=1	major_base=T	major_cov=32/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/41
RA	4004	.	1	898152	0	G	C	consensus_score=206.7	frequency=1	major_base=C	major_cov=25/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/44
RA	4005	.	1	898176	0	A	C	consensus_score=168.8	frequency=1	major_base=C	major_cov=22/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/37
RA	4006	.	1	898179	0	C	T	consensus_score=162.3	frequency=1	major_base=T	major_cov=22/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/37
RA	4007	.	1	898200	0	A	G	consensus_score=179.5	frequency=1	major_base=G	major_cov=25/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/39
RA	4008	.	1	898209	0	A	G	consensus_score=179.3	frequency=1	major_base=G	major_cov=23/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/41
RA	4009	.	1	898224	0	T	C	consensus_score=172.3	frequency=1	major_base=C	major_cov=20/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/42
RA	4010	.	1	898227	0	T	C	consensus_score=179.8	frequency=1	major_base=C	major_cov=20/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/42
RA	4011	.	1	898236	0	C	T	consensus_score=163.4	frequency=1	major_base=T	major_cov=21/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/40
RA	4012	.	1	898245	0	G	A	consensus_score=178.0	frequency=1	major_base=A	major_cov=22/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/42
RA	4013	.	1	898256	0	T	C	consensus_score=173.0	frequency=1	major_base=C	major_cov=22/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/42
RA	4014	.	1	898261	0	G	A	consensus_score=164.3	frequency=1	major_base=A	major_cov=20/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/40
RA	4015	.	1	898283	0	G	A	consensus_score=154.8	frequency=1	major_base=A	major_cov=20/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/37
RA	4016	.	1	898287	0	A	C	consensus_score=142.7	frequency=1	major_base=C	major_cov=20/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/34
RA	4017	.	1	898345	0	T	C	consensus_score=131.1	frequency=1	major_base=C	major_cov=25/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/33
RA	4018	.	1	898351	0	T	C	consensus_score=128.6	frequency=1	major_base=C	major_cov=24/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/34
RA	4019	.	1	898383	0	G	T	consensus_score=132.3	frequency=1	major_base=T	major_cov=28/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/35
RA	4020	.	1	898387	0	G	C	consensus_score=135.0	frequency=1	major_base=C	major_cov=28/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/35
RA	4021	.	1	898388	0	G	A	consensus_score=133.6	frequency=1	major_base=A	major_cov=28/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/35
RA	4022	.	1	898395	0	C	A	consensus_score=144.8	frequency=1	major_base=A	major_cov=29/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/38
RA	4023	.	1	898517	0	C	T	consensus_score=139.0	frequency=1	major_base=T	major_cov=29/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/31
RA	4024	.	1	898572	0	A	.	consensus_score=133.3	frequency=1	major_base=.	major_cov=22/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/21
RA	4025	.	1	898619	0	A	G	consensus_score=146.2	frequency=1	major_base=G	major_cov=29/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/27
RA	4026	.	1	898628	0	C	T	consensus_score=137.4	frequency=1	major_base=T	major_cov=27/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/24
RA	4027	.	1	898681	0	C	T	consensus_score=185.2	frequency=1	major_base=T	major_cov=34/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/31
RA	4028	.	1	898684	0	C	T	consensus_score=182.7	frequency=1	major_base=T	major_cov=34/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/31
RA	4029	.	1	898702	0	G	T	consensus_score=199.6	frequency=1	major_base=T	major_cov=38/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/32
RA	4030	.	1	898707	0	T	C	consensus_score=206.4	frequency=1	major_base=C	major_cov=38/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/33
RA	4031	.	1	898773	0	C	T	consensus_score=220.4	frequency=1	major_base=T	major_cov=38/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/40
RA	4032	.	1	898810	0	T	C	consensus_score=258.9	frequency=1	major_base=C	major_cov=45/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/48
RA	4033	.	1	898852	0	C	T	consensus_score=266.6	frequency=1	major_base=T	major_cov=44/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/49
RA	4034	.	1	898856	0	C	T	consensus_score=259.1	frequency=1	major_base=T	major_cov=42/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/49
RA	4035	.	1	898902	0	C	A	consensus_score=295.6	frequency=1	major_base=A	major_cov=45/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/58
RA	4036	.	1	898903	0	G	A	consensus_score=298.1	frequency=1	major_base=A	major_cov=45/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/58
RA	4037	.	1	898914	0	C	A	consensus_score=299.5	frequency=1	major_base=A	major_cov=46/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/59
RA	4038	.	1	898922	0	A	G	consensus_score=306.0	frequency=1	major_base=G	major_cov=45/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/59
RA	4039	.	1	899083	0	C	T	bias_e_value=1360570	bias_p_value=0.641718	consensus_score=205.0	fisher_strand_p_value=0.453333	frequency=1	ks_quality_p_value=0.626863	major_base=T	major_cov=33/41	major_frequency=9.867e-01	minor_base=C	minor_cov=1/0	new_cov=33/41	polymorphism_frequency=9.867e-01	polymorphism_score=-4.8	prediction=consensus	ref_cov=1/0	total_cov=34/41
RA	4040	.	1	899176	0	A	G	bias_e_value=1737970	bias_p_value=0.81972	consensus_score=209.4	fisher_strand_p_value=0.472222	frequency=1	ks_quality_p_value=0.981012	major_base=G	major_cov=38/33	major_frequency=9.861e-01	minor_base=A	minor_cov=0/1	new_cov=38/33	polymorphism_frequency=9.861e-01	polymorphism_score=-5.0	prediction=consensus	ref_cov=0/1	total_cov=38/34
RA	4041	.	1	899185	0	A	G	bias_e_value=1748140	bias_p_value=0.824519	consensus_score=222.9	fisher_strand_p_value=0.473684	frequency=1	ks_quality_p_value=0.991266	major_base=G	major_cov=40/35	major_frequency=9.868e-01	minor_base=A	minor_cov=0/1	new_cov=40/35	polymorphism_frequency=9.868e-01	polymorphism_score=-5.0	prediction=consensus	ref_cov=0/1	total_cov=40/36
RA	4042	.	1	899374	0	T	C	bias_e_value=1675020	bias_p_value=0.790032	consensus_score=248.8	fisher_strand_p_value=0.428571	frequency=1	ks_quality_p_value=0.995421	major_base=C	major_cov=48/35	major_frequency=9.881e-01	minor_base=T	minor_cov=0/1	new_cov=48/35	polymorphism_frequency=9.881e-01	polymorphism_score=-4.8	prediction=consensus	ref_cov=0/1	total_cov=48/36
RA	4043	.	1	899595	0	C	T	consensus_score=202.7	frequency=1	major_base=T	major_cov=39/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/30
RA	4044	.	1	899616	0	A	C	consensus_score=215.2	frequency=1	major_base=C	major_cov=39/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/33
RA	4045	.	1	899760	0	T	C	bias_e_value=1039860	bias_p_value=0.490453	consensus_score=303.0	fisher_strand_p_value=0.471698	frequency=1	ks_quality_p_value=0.383816	major_base=C	major_cov=56/49	major_frequency=9.906e-01	minor_base=T	minor_cov=0/1	new_cov=56/49	polymorphism_frequency=9.906e-01	polymorphism_score=-5.4	prediction=consensus	ref_cov=0/1	total_cov=56/50
RA	4046	.	1	900267	0	C	A	consensus_score=257.9	frequency=1	major_base=A	major_cov=49/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/44
RA	4047	.	1	900707	0	T	G	consensus_score=265.9	frequency=1	major_base=G	major_cov=44/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/50
RA	4048	.	1	901395	0	C	T	consensus_score=208.9	frequency=1	major_base=T	major_cov=28/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/46
RA	4049	.	1	908222	0	A	C	consensus_score=313.7	frequency=1	major_base=C	major_cov=46/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/62
RA	4050	.	1	908227	0	T	C	consensus_score=314.5	frequency=1	major_base=C	major_cov=48/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/62
RA	4051	.	1	908874	0	T	C	consensus_score=213.6	frequency=1	major_base=C	major_cov=47/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/26
RA	4052	.	1	909845	0	A	G	consensus_score=172.4	frequency=1	major_base=G	major_cov=35/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/26
RA	4053	.	1	911806	0	A	C	consensus_score=295.1	frequency=1	major_base=C	major_cov=56/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/43
RA	4054	.	1	913776	0	A	G	consensus_score=212.7	frequency=1	major_base=G	major_cov=28/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/43
RA	4055	.	1	916742	0	G	A	consensus_score=282.3	frequency=1	major_base=A	major_cov=47/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/52
RA	4056	.	1	917457	0	C	T	consensus_score=303.3	frequency=1	major_base=T	major_cov=60/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/45
RA	4057	.	1	917936	0	A	C	consensus_score=281.1	frequency=1	major_base=C	major_cov=50/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/45
RA	4058	.	1	918186	0	A	G	consensus_score=235.4	frequency=1	major_base=G	major_cov=36/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/42
RA	4059	.	1	918988	0	T	C	consensus_score=306.9	frequency=1	major_base=C	major_cov=44/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/62
RA	4060	.	1	920405	0	A	G	consensus_score=285.0	frequency=1	major_base=G	major_cov=51/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/44
RA	4061	.	1	920917	0	A	G	consensus_score=291.6	frequency=1	major_base=G	major_cov=48/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/53
RA	4062	.	1	923636	0	G	A	bias_e_value=0.000277574	bias_p_value=1.30919e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=141.3	fisher_strand_p_value=4.83912e-12	frequency=2.439e-01	ks_quality_p_value=1	major_base=G	major_cov=10/52	major_frequency=7.561e-01	minor_base=A	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.439e-01	polymorphism_score=13.6	prediction=polymorphism	ref_cov=10/52	total_cov=30/52
RA	4063	.	1	923650	0	A	T	bias_e_value=0.0235701	bias_p_value=1.11169e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=179.6	fisher_strand_p_value=4.9574e-10	frequency=2.143e-01	ks_quality_p_value=1	major_base=A	major_cov=14/52	major_frequency=7.857e-01	minor_base=T	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.143e-01	polymorphism_score=12.2	prediction=polymorphism	ref_cov=14/52	total_cov=32/52
RA	4064	.	1	924077	0	C	T	consensus_score=325.6	frequency=1	major_base=T	major_cov=59/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/53
RA	4065	.	1	925333	0	A	G	consensus_score=255.2	frequency=1	major_base=G	major_cov=35/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/48
RA	4066	.	1	927188	0	A	G	consensus_score=261.0	frequency=1	major_base=G	major_cov=49/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/43
RA	4067	.	1	927271	0	A	G	consensus_score=244.9	frequency=1	major_base=G	major_cov=41/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/43
RA	4068	.	1	927308	0	C	T	consensus_score=252.7	frequency=1	major_base=T	major_cov=37/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/51
RA	4069	.	1	936659	0	G	A	consensus_score=182.7	frequency=1	major_base=A	major_cov=29/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/35
RA	4070	.	1	936835	0	A	C	consensus_score=208.5	frequency=1	major_base=C	major_cov=35/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/34
RA	4071	.	1	939118	0	T	C	consensus_score=138.6	frequency=1	major_base=C	major_cov=21/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/25
RA	4072	.	1	939539	0	G	A	consensus_score=278.0	frequency=1	major_base=A	major_cov=49/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/48
RA	4073	.	1	941001	0	C	T	consensus_score=250.6	frequency=1	major_base=T	major_cov=40/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/44
RA	4074	.	1	942480	0	A	G	bias_e_value=0.0139306	bias_p_value=6.57045e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=92.0	fisher_strand_p_value=2.85981e-10	frequency=2.836e-01	ks_quality_p_value=1	major_base=A	major_cov=9/39	major_frequency=7.164e-01	minor_base=G	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.836e-01	polymorphism_score=14.5	prediction=polymorphism	ref_cov=9/39	total_cov=28/39
RA	4075	.	1	942509	0	T	G	bias_e_value=0.00274502	bias_p_value=1.2947e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=122.9	fisher_strand_p_value=5.24795e-11	frequency=3.333e-01	ks_quality_p_value=1	major_base=T	major_cov=11/37	major_frequency=6.667e-01	minor_base=G	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=3.333e-01	polymorphism_score=14.6	prediction=polymorphism	ref_cov=11/37	total_cov=35/37
RA	4076	.	1	942894	0	A	G	consensus_score=319.8	frequency=1	major_base=G	major_cov=49/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/60
RA	4077	.	1	944067	0	C	T	consensus_score=378.8	frequency=1	major_base=T	major_cov=69/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=69/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=69/63
RA	4078	.	1	944698	0	C	T	consensus_score=261.4	frequency=1	major_base=T	major_cov=42/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/50
RA	4079	.	1	945020	0	A	G	consensus_score=254.4	frequency=1	major_base=G	major_cov=37/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/47
RA	4080	.	1	947707	0	G	A	consensus_score=270.5	frequency=1	major_base=A	major_cov=59/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/37
RA	4081	.	1	949964	1	.	A	bias_e_value=2120180	bias_p_value=0.999991	consensus_score=267.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.995846	major_base=A	major_cov=52/40	major_frequency=9.787e-01	minor_base=.	minor_cov=1/1	new_cov=52/40	polymorphism_frequency=9.787e-01	polymorphism_score=-0.9	prediction=consensus	ref_cov=1/1	total_cov=53/41
RA	4082	.	1	950554	0	T	C	consensus_score=296.7	frequency=1	major_base=C	major_cov=49/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/51
RA	4083	.	1	950935	0	T	C	consensus_score=284.0	frequency=1	major_base=C	major_cov=37/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/62
RA	4084	.	1	951061	0	T	C	consensus_score=328.1	frequency=1	major_base=C	major_cov=50/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/57
RA	4085	.	1	951736	0	G	A	consensus_score=198.2	frequency=1	major_base=A	major_cov=41/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/31
RA	4086	.	1	951948	0	C	T	consensus_score=242.1	frequency=1	major_base=T	major_cov=48/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/34
RA	4087	.	1	954023	0	C	G	consensus_score=223.6	frequency=1	major_base=G	major_cov=39/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/35
RA	4088	.	1	954226	1	.	T	consensus_score=214.9	frequency=1	major_base=T	major_cov=48/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/28
RA	4089	.	1	957811	0	A	G	consensus_score=271.1	frequency=1	major_base=G	major_cov=52/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/41
RA	4090	.	1	960130	0	T	G	consensus_score=295.3	frequency=1	major_base=G	major_cov=50/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/51
RA	4091	.	1	960327	0	C	A	consensus_score=215.1	frequency=1	major_base=A	major_cov=28/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/49
RA	4092	.	1	960869	0	T	G	consensus_score=143.4	frequency=1	major_base=G	major_cov=20/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/29
RA	4093	.	1	962916	0	C	T	consensus_score=198.5	frequency=1	major_base=T	major_cov=30/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/41
RA	4094	.	1	963089	0	G	A	consensus_score=139.9	frequency=1	major_base=A	major_cov=21/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/27
RA	4095	.	1	965182	0	G	T	bias_e_value=1755590	bias_p_value=0.828033	consensus_score=279.1	fisher_strand_p_value=0.474227	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=51/45	major_frequency=9.897e-01	minor_base=G	minor_cov=0/1	new_cov=51/45	polymorphism_frequency=9.897e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=51/46
RA	4096	.	1	969597	0	T	C	consensus_score=317.9	frequency=1	major_base=C	major_cov=58/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/52
RA	4097	.	1	969805	0	A	C	consensus_score=334.7	frequency=1	major_base=C	major_cov=54/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/55
RA	4098	.	1	970733	0	T	G	consensus_score=265.2	frequency=1	major_base=G	major_cov=51/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/36
RA	4099	.	1	972101	0	T	C	consensus_score=242.4	frequency=1	major_base=C	major_cov=41/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/42
RA	4100	.	1	972204	0	G	A	consensus_score=246.0	frequency=1	major_base=A	major_cov=45/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/38
RA	4101	.	1	974777	0	A	G	consensus_score=313.2	frequency=1	major_base=G	major_cov=46/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/62
RA	4102	.	1	976567	0	A	C	consensus_score=402.4	frequency=1	major_base=C	major_cov=66/70	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/70	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/70
RA	4103	.	1	978500	0	C	A	consensus_score=229.7	frequency=1	major_base=A	major_cov=39/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/43
RA	4104	.	1	979025	0	G	A	consensus_score=331.1	frequency=1	major_base=A	major_cov=63/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/54
RA	4105	.	1	979521	0	A	G	consensus_score=306.9	frequency=1	major_base=G	major_cov=56/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/52
RA	4106	.	1	981390	0	C	.	consensus_score=423.1	frequency=1	major_base=.	major_cov=51/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/49
RA	4107	.	1	981616	0	T	G	consensus_score=271.4	frequency=1	major_base=G	major_cov=49/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/44
RA	4108	.	1	981854	0	A	G	consensus_score=247.7	frequency=1	major_base=G	major_cov=44/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/43
RA	4109	.	1	982287	0	G	T	consensus_score=279.8	frequency=1	major_base=T	major_cov=44/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/54
RA	4110	.	1	986436	0	G	C	consensus_score=351.8	frequency=1	major_base=C	major_cov=53/68	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/68	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/68
RA	4111	.	1	988997	0	C	T	bias_e_value=2120200	bias_p_value=1	consensus_score=319.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=57/51	major_frequency=9.908e-01	minor_base=A	minor_cov=1/0	new_cov=57/51	polymorphism_frequency=9.908e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/51
RA	4112	.	1	992097	0	A	G	consensus_score=332.4	frequency=1	major_base=G	major_cov=55/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/57
RA	4113	.	1	993721	0	A	G	consensus_score=240.3	frequency=1	major_base=G	major_cov=39/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/41
RA	4114	.	1	993836	0	T	C	consensus_score=227.2	frequency=1	major_base=C	major_cov=42/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/37
RA	4115	.	1	994262	0	C	T	bias_e_value=4.02623e-08	bias_p_value=1.89899e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=69.1	fisher_strand_p_value=5.44443e-16	frequency=3.827e-01	ks_quality_p_value=0.963963	major_base=C	major_cov=43/7	major_frequency=6.173e-01	minor_base=T	minor_cov=0/31	new_cov=0/31	polymorphism_frequency=3.827e-01	polymorphism_score=30.7	prediction=polymorphism	ref_cov=43/7	total_cov=43/38
RA	4116	.	1	994752	0	C	.	consensus_score=172.2	frequency=1	major_base=.	major_cov=24/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/18
RA	4117	.	1	994753	0	C	.	bias_e_value=1060910	bias_p_value=0.500385	consensus_score=165.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.186912	major_base=.	major_cov=23/18	major_frequency=9.762e-01	minor_base=C	minor_cov=1/0	new_cov=23/18	polymorphism_frequency=9.762e-01	polymorphism_score=-1.7	prediction=consensus	ref_cov=1/0	total_cov=24/18
RA	4118	.	1	998329	0	C	G	consensus_score=349.9	frequency=1	major_base=G	major_cov=55/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/61
RA	4119	.	1	1001129	0	G	A	consensus_score=213.8	frequency=1	major_base=A	major_cov=31/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/44
RA	4120	.	1	1001289	0	T	C	bias_e_value=2120190	bias_p_value=1	consensus_score=216.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999609	major_base=C	major_cov=43/28	major_frequency=9.861e-01	minor_base=A	minor_cov=1/0	new_cov=43/28	polymorphism_frequency=9.861e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/28
RA	4121	.	1	1002969	0	C	T	bias_e_value=1747880	bias_p_value=0.824398	consensus_score=290.8	fisher_strand_p_value=0.469388	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=52/45	major_frequency=9.898e-01	minor_base=G	minor_cov=0/1	new_cov=52/45	polymorphism_frequency=9.898e-01	polymorphism_score=-5.5	prediction=consensus	ref_cov=0/0	total_cov=52/46
RA	4122	.	1	1004736	0	G	A	consensus_score=299.9	frequency=1	major_base=A	major_cov=53/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/52
RA	4123	.	1	1007798	0	G	A	consensus_score=246.9	frequency=1	major_base=A	major_cov=46/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/41
RA	4124	.	1	1009517	0	C	T	consensus_score=222.9	frequency=1	major_base=T	major_cov=39/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/37
RA	4125	.	1	1019178	0	G	A	consensus_score=286.5	frequency=1	major_base=A	major_cov=42/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/55
RA	4126	.	1	1019326	0	C	T	consensus_score=247.4	frequency=1	major_base=T	major_cov=33/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/50
RA	4127	.	1	1021887	0	A	G	bias_e_value=1720340	bias_p_value=0.811407	consensus_score=253.5	fisher_strand_p_value=0.456522	frequency=1	ks_quality_p_value=0.991437	major_base=G	major_cov=41/50	major_frequency=9.891e-01	minor_base=T	minor_cov=1/0	new_cov=41/50	polymorphism_frequency=9.891e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/50
RA	4128	.	1	1022634	0	T	G	consensus_score=182.2	frequency=1	major_base=G	major_cov=29/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/32
RA	4129	.	1	1025975	0	T	C	consensus_score=227.9	frequency=1	major_base=C	major_cov=42/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/34
RA	4130	.	1	1026312	0	A	G	consensus_score=195.3	frequency=1	major_base=G	major_cov=27/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/41
RA	4131	.	1	1028241	0	T	G	consensus_score=193.1	frequency=1	major_base=G	major_cov=40/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/27
RA	4132	.	1	1029048	0	A	C	consensus_score=282.6	frequency=1	major_base=C	major_cov=52/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/44
RA	4133	.	1	1030023	0	T	C	consensus_score=241.6	frequency=1	major_base=C	major_cov=43/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/40
RA	4134	.	1	1031457	0	C	T	consensus_score=198.7	frequency=1	major_base=T	major_cov=40/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/30
RA	4135	.	1	1031829	0	A	C	consensus_score=134.8	frequency=1	major_base=C	major_cov=31/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/16
RA	4136	.	1	1031960	0	G	A	consensus_score=193.8	frequency=1	major_base=A	major_cov=46/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/25
RA	4137	.	1	1034819	0	C	T	consensus_score=184.8	frequency=1	major_base=T	major_cov=34/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/34
RA	4138	.	1	1034820	0	C	T	consensus_score=187.7	frequency=1	major_base=T	major_cov=34/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/34
RA	4139	.	1	1036000	0	A	G	consensus_score=162.9	frequency=1	major_base=G	major_cov=33/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/26
RA	4140	.	1	1036070	0	G	A	consensus_score=177.6	frequency=1	major_base=A	major_cov=37/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/26
RA	4141	.	1	1036133	0	C	T	consensus_score=168.8	frequency=1	major_base=T	major_cov=32/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/28
RA	4142	.	1	1037373	0	A	G	bias_e_value=361603	bias_p_value=0.170552	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-3.3	deleted=1	fisher_strand_p_value=0.0405594	frequency=5.333e-01	ks_quality_p_value=1	major_base=G	major_cov=1/7	major_frequency=5.333e-01	minor_base=A	minor_cov=5/2	new_cov=1/7	polymorphism_frequency=5.333e-01	polymorphism_score=11.5	prediction=polymorphism	ref_cov=5/2	total_cov=6/9
RA	4143	.	1	1037382	0	G	A	bias_e_value=98007.4	bias_p_value=0.0462256	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-2.9	deleted=1	fisher_strand_p_value=0.0152201	frequency=4.706e-01	ks_quality_p_value=0.520173	major_base=G	major_cov=7/2	major_frequency=5.294e-01	minor_base=A	minor_cov=1/7	new_cov=1/7	polymorphism_frequency=4.706e-01	polymorphism_score=13.7	prediction=polymorphism	ref_cov=7/2	total_cov=8/9
RA	4144	.	1	1037391	0	C	T	bias_e_value=100718	bias_p_value=0.0475042	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-4.3	deleted=1	fisher_strand_p_value=0.00892219	frequency=4.762e-01	ks_quality_p_value=0.917062	major_base=C	major_cov=9/2	major_frequency=5.238e-01	minor_base=T	minor_cov=2/8	new_cov=2/8	polymorphism_frequency=4.762e-01	polymorphism_score=20.0	prediction=polymorphism	ref_cov=9/2	total_cov=11/10
RA	4145	.	1	1037397	0	T	C	bias_e_value=2708.42	bias_p_value=0.00127744	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-4.0	deleted=1	fisher_strand_p_value=0.00892219	frequency=4.762e-01	ks_quality_p_value=0.0143727	major_base=T	major_cov=9/2	major_frequency=5.238e-01	minor_base=C	minor_cov=2/8	new_cov=2/8	polymorphism_frequency=4.762e-01	polymorphism_score=17.9	prediction=polymorphism	ref_cov=9/2	total_cov=11/10
RA	4146	.	1	1037403	0	T	C	bias_e_value=38661	bias_p_value=0.0182346	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=3.0	fisher_strand_p_value=0.00343249	frequency=4.348e-01	ks_quality_p_value=0.765246	major_base=T	major_cov=11/2	major_frequency=5.652e-01	minor_base=C	minor_cov=2/8	new_cov=2/8	polymorphism_frequency=4.348e-01	polymorphism_score=17.2	prediction=polymorphism	ref_cov=11/2	total_cov=13/10
RA	4147	.	1	1037412	0	C	A	bias_e_value=14021.7	bias_p_value=0.00661342	consensus_reject=FREQUENCY_CUTOFF	consensus_score=21.7	fisher_strand_p_value=0.00274073	frequency=3.793e-01	ks_quality_p_value=0.297462	major_base=C	major_cov=14/4	major_frequency=6.207e-01	minor_base=A	minor_cov=2/9	new_cov=2/9	polymorphism_frequency=3.793e-01	polymorphism_score=25.0	prediction=polymorphism	ref_cov=14/4	total_cov=16/13
RA	4148	.	1	1037427	0	A	G	bias_e_value=179615	bias_p_value=0.0847164	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=6.2	fisher_strand_p_value=0.0166204	frequency=4.167e-01	ks_quality_p_value=1	major_base=A	major_cov=15/6	major_frequency=5.833e-01	minor_base=G	minor_cov=4/11	new_cov=4/11	polymorphism_frequency=4.167e-01	polymorphism_score=31.4	prediction=polymorphism	ref_cov=15/6	total_cov=19/17
RA	4149	.	1	1037433	0	G	A	bias_e_value=86819.2	bias_p_value=0.0409487	consensus_reject=FREQUENCY_CUTOFF	consensus_score=21.5	fisher_strand_p_value=0.00727285	frequency=3.947e-01	ks_quality_p_value=0.940802	major_base=G	major_cov=17/6	major_frequency=6.053e-01	minor_base=A	minor_cov=4/11	new_cov=4/11	polymorphism_frequency=3.947e-01	polymorphism_score=28.6	prediction=polymorphism	ref_cov=17/6	total_cov=21/17
RA	4150	.	1	1037442	0	A	G	bias_e_value=318346	bias_p_value=0.150149	consensus_reject=FREQUENCY_CUTOFF	consensus_score=13.5	fisher_strand_p_value=0.0355345	frequency=4.130e-01	ks_quality_p_value=0.966667	major_base=A	major_cov=19/8	major_frequency=5.870e-01	minor_base=G	minor_cov=7/12	new_cov=7/12	polymorphism_frequency=4.130e-01	polymorphism_score=41.1	prediction=polymorphism	ref_cov=19/8	total_cov=26/20
RA	4151	.	1	1037451	0	G	C	bias_e_value=52362.4	bias_p_value=0.024697	consensus_reject=FREQUENCY_CUTOFF	consensus_score=31.6	fisher_strand_p_value=0.0234418	frequency=4.151e-01	ks_quality_p_value=0.159967	major_base=G	major_cov=22/9	major_frequency=5.849e-01	minor_base=C	minor_cov=8/14	new_cov=8/14	polymorphism_frequency=4.151e-01	polymorphism_score=67.0	prediction=polymorphism	ref_cov=22/9	total_cov=30/23
RA	4152	.	1	1037457	0	A	T	bias_e_value=709226	bias_p_value=0.33451	consensus_reject=FREQUENCY_CUTOFF	consensus_score=41.9	fisher_strand_p_value=0.104619	frequency=4.286e-01	ks_quality_p_value=0.97357	major_base=A	major_cov=21/11	major_frequency=5.714e-01	minor_base=T	minor_cov=10/14	new_cov=10/14	polymorphism_frequency=4.286e-01	polymorphism_score=76.0	prediction=polymorphism	ref_cov=21/11	total_cov=31/25
RA	4153	.	1	1037460	0	A	T	bias_e_value=670477	bias_p_value=0.316234	consensus_reject=FREQUENCY_CUTOFF	consensus_score=37.2	fisher_strand_p_value=0.104619	frequency=4.286e-01	ks_quality_p_value=0.898397	major_base=A	major_cov=21/11	major_frequency=5.714e-01	minor_base=T	minor_cov=10/14	new_cov=10/14	polymorphism_frequency=4.286e-01	polymorphism_score=79.1	prediction=polymorphism	ref_cov=21/11	total_cov=31/25
RA	4154	.	1	1037466	0	A	C	bias_e_value=801501	bias_p_value=0.378032	consensus_reject=FREQUENCY_CUTOFF	consensus_score=25.5	fisher_strand_p_value=0.12498	frequency=4.516e-01	ks_quality_p_value=0.973784	major_base=A	major_cov=21/13	major_frequency=5.484e-01	minor_base=C	minor_cov=11/17	new_cov=11/17	polymorphism_frequency=4.516e-01	polymorphism_score=76.5	prediction=polymorphism	ref_cov=21/13	total_cov=32/30
RA	4155	.	1	1037469	0	G	A	bias_e_value=1112070	bias_p_value=0.524511	consensus_reject=FREQUENCY_CUTOFF	consensus_score=26.7	fisher_strand_p_value=0.201634	frequency=4.516e-01	ks_quality_p_value=1	major_base=G	major_cov=20/14	major_frequency=5.484e-01	minor_base=A	minor_cov=11/17	new_cov=11/17	polymorphism_frequency=4.516e-01	polymorphism_score=55.9	prediction=polymorphism	ref_cov=20/14	total_cov=31/31
RA	4156	.	1	1037475	0	G	A	bias_e_value=1160410	bias_p_value=0.547312	consensus_reject=FREQUENCY_CUTOFF	consensus_score=29.1	fisher_strand_p_value=0.216194	frequency=4.462e-01	ks_quality_p_value=1	major_base=G	major_cov=21/15	major_frequency=5.538e-01	minor_base=A	minor_cov=12/17	new_cov=12/17	polymorphism_frequency=4.462e-01	polymorphism_score=59.0	prediction=polymorphism	ref_cov=21/15	total_cov=33/32
RA	4157	.	1	1037479	0	G	T	bias_e_value=1160390	bias_p_value=0.547302	consensus_reject=FREQUENCY_CUTOFF	consensus_score=24.2	fisher_strand_p_value=0.216194	frequency=5.538e-01	ks_quality_p_value=0.999971	major_base=T	major_cov=21/15	major_frequency=5.538e-01	minor_base=G	minor_cov=12/17	new_cov=21/15	polymorphism_frequency=5.538e-01	polymorphism_score=84.0	prediction=polymorphism	ref_cov=12/17	total_cov=33/32
RA	4158	.	1	1037499	0	G	A	bias_e_value=423.517	bias_p_value=0.000199754	consensus_reject=FREQUENCY_CUTOFF	consensus_score=25.9	fisher_strand_p_value=0.183683	frequency=4.500e-01	ks_quality_p_value=9.05969e-05	major_base=G	major_cov=24/20	major_frequency=5.500e-01	minor_base=A	minor_cov=14/22	new_cov=14/22	polymorphism_frequency=4.500e-01	polymorphism_score=77.3	prediction=polymorphism	ref_cov=24/20	total_cov=38/42
RA	4159	.	1	1037502	0	T	C	bias_e_value=1012320	bias_p_value=0.477465	consensus_reject=FREQUENCY_CUTOFF	consensus_score=24.1	fisher_strand_p_value=0.183683	frequency=4.500e-01	ks_quality_p_value=0.944766	major_base=T	major_cov=24/20	major_frequency=5.500e-01	minor_base=C	minor_cov=14/22	new_cov=14/22	polymorphism_frequency=4.500e-01	polymorphism_score=78.6	prediction=polymorphism	ref_cov=24/20	total_cov=38/42
RA	4160	.	1	1037507	0	T	C	bias_e_value=1085650	bias_p_value=0.51205	consensus_reject=FREQUENCY_CUTOFF	consensus_score=16.4	fisher_strand_p_value=0.197777	frequency=4.598e-01	ks_quality_p_value=0.980625	major_base=T	major_cov=26/21	major_frequency=5.402e-01	minor_base=C	minor_cov=16/24	new_cov=16/24	polymorphism_frequency=4.598e-01	polymorphism_score=93.4	prediction=polymorphism	ref_cov=26/21	total_cov=42/45
RA	4161	.	1	1037524	0	G	T	bias_e_value=515211	bias_p_value=0.243002	consensus_reject=FREQUENCY_CUTOFF	consensus_score=34.3	fisher_strand_p_value=0.105286	frequency=4.845e-01	ks_quality_p_value=0.618523	major_base=G	major_cov=29/21	major_frequency=5.155e-01	minor_base=T	minor_cov=19/28	new_cov=19/28	polymorphism_frequency=4.845e-01	polymorphism_score=133.6	prediction=polymorphism	ref_cov=29/21	total_cov=48/49
RA	4162	.	1	1037537	0	T	C	bias_e_value=978822	bias_p_value=0.461666	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=9.3	fisher_strand_p_value=0.164649	frequency=4.950e-01	ks_quality_p_value=1	major_base=T	major_cov=28/23	major_frequency=5.050e-01	minor_base=C	minor_cov=20/30	new_cov=20/30	polymorphism_frequency=4.950e-01	polymorphism_score=113.5	prediction=polymorphism	ref_cov=28/23	total_cov=48/53
RA	4163	.	1	1037540	0	A	T	bias_e_value=117149	bias_p_value=0.055254	consensus_reject=FREQUENCY_CUTOFF	consensus_score=32.6	fisher_strand_p_value=0.229152	frequency=5.051e-01	ks_quality_p_value=0.0428847	major_base=T	major_cov=20/30	major_frequency=5.051e-01	minor_base=A	minor_cov=26/23	new_cov=20/30	polymorphism_frequency=5.051e-01	polymorphism_score=169.4	prediction=polymorphism	ref_cov=26/23	total_cov=46/53
RA	4164	.	1	1037553	0	A	G	bias_e_value=783828	bias_p_value=0.369696	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-3.3	fisher_strand_p_value=0.243432	frequency=5.143e-01	ks_quality_p_value=0.483816	major_base=G	major_cov=22/32	major_frequency=5.143e-01	minor_base=A	minor_cov=27/24	new_cov=22/32	polymorphism_frequency=5.143e-01	polymorphism_score=109.8	prediction=polymorphism	ref_cov=27/24	total_cov=49/56
RA	4165	.	1	1037588	0	T	C	bias_e_value=910642	bias_p_value=0.429508	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=6.0	fisher_strand_p_value=0.344458	frequency=5.045e-01	ks_quality_p_value=0.42776	major_base=C	major_cov=26/30	major_frequency=5.045e-01	minor_base=T	minor_cov=31/24	new_cov=26/30	polymorphism_frequency=5.045e-01	polymorphism_score=124.6	prediction=polymorphism	ref_cov=31/24	total_cov=57/54
RA	4166	.	1	1037593	0	C	T	bias_e_value=1992230	bias_p_value=0.939644	consensus_reject=FREQUENCY_CUTOFF	consensus_score=30.4	fisher_strand_p_value=0.695198	frequency=4.757e-01	ks_quality_p_value=0.968539	major_base=C	major_cov=30/24	major_frequency=5.243e-01	minor_base=T	minor_cov=25/24	new_cov=25/24	polymorphism_frequency=4.757e-01	polymorphism_score=103.4	prediction=polymorphism	ref_cov=30/24	total_cov=55/48
RA	4167	.	1	1037596	0	C	T	bias_e_value=232604	bias_p_value=0.109709	consensus_reject=FREQUENCY_CUTOFF	consensus_score=30.4	fisher_strand_p_value=0.842573	frequency=4.706e-01	ks_quality_p_value=0.0272806	major_base=C	major_cov=30/24	major_frequency=5.294e-01	minor_base=T	minor_cov=25/23	new_cov=25/23	polymorphism_frequency=4.706e-01	polymorphism_score=105.4	prediction=polymorphism	ref_cov=30/24	total_cov=55/48
RA	4168	.	1	1037597	0	C	T	bias_e_value=100752	bias_p_value=0.04752	consensus_reject=FREQUENCY_CUTOFF	consensus_score=27.5	fisher_strand_p_value=0.695198	frequency=4.757e-01	ks_quality_p_value=0.0117743	major_base=C	major_cov=30/24	major_frequency=5.243e-01	minor_base=T	minor_cov=25/24	new_cov=25/24	polymorphism_frequency=4.757e-01	polymorphism_score=107.0	prediction=polymorphism	ref_cov=30/24	total_cov=55/48
RA	4169	.	1	1037601	1	.	T	bias_e_value=1.80935e-06	bias_p_value=8.53387e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=62.5	fisher_strand_p_value=0.695198	frequency=4.757e-01	ks_quality_p_value=3.80475e-14	major_base=.	major_cov=30/24	major_frequency=5.243e-01	minor_base=T	minor_cov=25/24	new_cov=25/24	polymorphism_frequency=4.757e-01	polymorphism_score=218.8	prediction=polymorphism	ref_cov=30/24	total_cov=55/48
RA	4170	.	1	1037602	0	C	A	bias_e_value=3.87324e-05	bias_p_value=1.82683e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=41.7	fisher_strand_p_value=0.695198	frequency=4.757e-01	ks_quality_p_value=9.03129e-13	major_base=C	major_cov=30/24	major_frequency=5.243e-01	minor_base=A	minor_cov=25/24	new_cov=25/24	polymorphism_frequency=4.757e-01	polymorphism_score=139.7	prediction=polymorphism	ref_cov=30/24	total_cov=55/48
RA	4171	.	1	1037603	0	G	T	bias_e_value=42.8793	bias_p_value=2.02242e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=41.8	fisher_strand_p_value=0.695198	frequency=4.757e-01	ks_quality_p_value=2.00886e-06	major_base=G	major_cov=30/24	major_frequency=5.243e-01	minor_base=T	minor_cov=25/24	new_cov=25/24	polymorphism_frequency=4.757e-01	polymorphism_score=137.1	prediction=polymorphism	ref_cov=30/24	total_cov=55/48
RA	4172	.	1	1037606	0	G	A	bias_e_value=88125.9	bias_p_value=0.041565	consensus_reject=FREQUENCY_CUTOFF	consensus_score=28.4	fisher_strand_p_value=0.695198	frequency=4.757e-01	ks_quality_p_value=0.0100204	major_base=G	major_cov=30/24	major_frequency=5.243e-01	minor_base=A	minor_cov=25/24	new_cov=25/24	polymorphism_frequency=4.757e-01	polymorphism_score=105.2	prediction=polymorphism	ref_cov=30/24	total_cov=55/48
RA	4173	.	1	1037616	1	.	T	bias_e_value=1701390	bias_p_value=0.802467	consensus_reject=FREQUENCY_CUTOFF	consensus_score=48.5	fisher_strand_p_value=0.441508	frequency=5.000e-01	ks_quality_p_value=1	major_base=.	major_cov=30/24	major_frequency=5.000e-01	minor_base=T	minor_cov=25/29	new_cov=25/29	polymorphism_frequency=5.000e-01	polymorphism_score=243.0	prediction=polymorphism	ref_cov=30/24	total_cov=55/53
RA	4174	.	1	1037616	2	.	C	bias_e_value=1701390	bias_p_value=0.802467	consensus_reject=FREQUENCY_CUTOFF	consensus_score=62.9	fisher_strand_p_value=0.441508	frequency=5.000e-01	ks_quality_p_value=1	major_base=.	major_cov=30/24	major_frequency=5.000e-01	minor_base=C	minor_cov=25/29	new_cov=25/29	polymorphism_frequency=5.000e-01	polymorphism_score=277.2	prediction=polymorphism	ref_cov=30/24	total_cov=55/53
RA	4175	.	1	1037705	0	T	.	bias_e_value=29061.9	bias_p_value=0.0137072	consensus_reject=FREQUENCY_CUTOFF	consensus_score=13.8	fisher_strand_p_value=0.277233	frequency=6.047e-01	ks_quality_p_value=0.00679705	major_base=.	major_cov=24/28	major_frequency=6.047e-01	minor_base=T	minor_cov=20/14	new_cov=24/28	polymorphism_frequency=6.047e-01	polymorphism_score=147.9	prediction=polymorphism	ref_cov=20/14	total_cov=44/42
RA	4176	.	1	1037706	0	C	.	bias_e_value=609774	bias_p_value=0.287603	consensus_reject=FREQUENCY_CUTOFF	consensus_score=11.6	fisher_strand_p_value=0.277233	frequency=6.047e-01	ks_quality_p_value=0.296527	major_base=.	major_cov=24/28	major_frequency=6.047e-01	minor_base=C	minor_cov=20/14	new_cov=24/28	polymorphism_frequency=6.047e-01	polymorphism_score=162.9	prediction=polymorphism	ref_cov=20/14	total_cov=44/42
RA	4177	.	1	1038064	0	A	C	consensus_score=137.0	frequency=1	major_base=C	major_cov=29/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/19
RA	4178	.	1	1038375	0	G	A	consensus_score=194.9	frequency=1	major_base=A	major_cov=27/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/41
RA	4179	.	1	1043743	0	C	A	consensus_score=269.9	frequency=1	major_base=A	major_cov=48/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/46
RA	4180	.	1	1046277	0	G	A	consensus_score=284.3	frequency=1	major_base=A	major_cov=50/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/46
RA	4181	.	1	1046655	0	A	G	consensus_score=127.1	frequency=1	major_base=G	major_cov=24/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/19
RA	4182	.	1	1047247	0	G	T	consensus_score=225.8	frequency=1	major_base=T	major_cov=46/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/33
RA	4183	.	1	1047533	0	G	A	consensus_score=214.3	frequency=1	major_base=A	major_cov=46/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/31
RA	4184	.	1	1050743	0	T	C	consensus_score=213.4	frequency=1	major_base=C	major_cov=36/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/36
RA	4185	.	1	1051679	0	T	C	consensus_score=218.6	frequency=1	major_base=C	major_cov=36/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/41
RA	4186	.	1	1052002	0	T	C	bias_e_value=1699470	bias_p_value=0.801562	consensus_score=193.6	fisher_strand_p_value=0.441176	frequency=1	ks_quality_p_value=0.998246	major_base=C	major_cov=38/29	major_frequency=9.853e-01	minor_base=T	minor_cov=0/1	new_cov=38/29	polymorphism_frequency=9.853e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=38/30
RA	4187	.	1	1055335	0	T	G	bias_e_value=2120200	bias_p_value=1	consensus_score=209.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=38/34	major_frequency=9.863e-01	minor_base=T	minor_cov=1/0	new_cov=38/34	polymorphism_frequency=9.863e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=39/34
RA	4188	.	1	1056712	0	A	G	bias_e_value=1727320	bias_p_value=0.814699	consensus_score=211.7	fisher_strand_p_value=0.45679	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=44/36	major_frequency=9.877e-01	minor_base=T	minor_cov=0/1	new_cov=44/36	polymorphism_frequency=9.877e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/37
RA	4189	.	1	1056861	0	A	C	bias_e_value=2.18013e-08	bias_p_value=1.02827e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=102.5	fisher_strand_p_value=2.79313e-16	frequency=4.267e-01	ks_quality_p_value=1	major_base=A	major_cov=38/5	major_frequency=5.733e-01	minor_base=C	minor_cov=0/32	new_cov=0/32	polymorphism_frequency=4.267e-01	polymorphism_score=11.6	prediction=polymorphism	ref_cov=38/5	total_cov=38/37
RA	4190	.	1	1058558	0	G	T	consensus_score=282.4	frequency=1	major_base=T	major_cov=50/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/49
RA	4191	.	1	1061776	0	T	C	consensus_score=291.8	frequency=1	major_base=C	major_cov=53/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/45
RA	4192	.	1	1062495	0	A	G	consensus_score=285.5	frequency=1	major_base=G	major_cov=42/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/52
RA	4193	.	1	1062554	0	T	C	consensus_score=296.9	frequency=1	major_base=C	major_cov=44/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/53
RA	4194	.	1	1063227	0	G	A	consensus_score=233.2	frequency=1	major_base=A	major_cov=41/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/41
RA	4195	.	1	1064380	0	G	A	bias_e_value=1364320	bias_p_value=0.64349	consensus_score=59.9	fisher_strand_p_value=0.48	frequency=1	ks_quality_p_value=0.594978	major_base=A	major_cov=11/13	major_frequency=9.231e-01	minor_base=G	minor_cov=2/0	new_cov=11/13	polymorphism_frequency=9.231e-01	polymorphism_score=-2.7	prediction=consensus	ref_cov=2/0	total_cov=13/13
RA	4196	.	1	1071535	0	T	C	consensus_score=242.6	frequency=1	major_base=C	major_cov=51/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/31
RA	4197	.	1	1072496	0	T	G	consensus_score=285.1	frequency=1	major_base=G	major_cov=53/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/45
RA	4198	.	1	1074705	0	T	C	consensus_score=203.0	frequency=1	major_base=C	major_cov=40/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/29
RA	4199	.	1	1076050	0	C	G	consensus_score=184.7	frequency=1	major_base=G	major_cov=36/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/26
RA	4200	.	1	1079780	0	T	A	consensus_score=141.4	frequency=1	major_base=A	major_cov=18/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/33
RA	4201	.	1	1080746	0	A	G	consensus_score=193.5	frequency=1	major_base=G	major_cov=40/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/26
RA	4202	.	1	1081537	0	G	A	consensus_score=261.6	frequency=1	major_base=A	major_cov=41/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/50
RA	4203	.	1	1081643	0	G	A	consensus_score=200.8	frequency=1	major_base=A	major_cov=34/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/37
RA	4204	.	1	1081939	0	C	T	consensus_score=209.0	frequency=1	major_base=T	major_cov=34/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/40
RA	4205	.	1	1083709	0	T	G	consensus_score=170.2	frequency=1	major_base=G	major_cov=32/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/28
RA	4206	.	1	1084281	0	T	C	bias_e_value=2120190	bias_p_value=1	consensus_score=179.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999561	major_base=C	major_cov=31/36	major_frequency=9.853e-01	minor_base=A	minor_cov=0/1	new_cov=31/36	polymorphism_frequency=9.853e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/37
RA	4207	.	1	1085512	0	T	C	consensus_score=32.8	frequency=1	major_base=C	major_cov=8/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/5
RA	4208	.	1	1085661	0	T	C	consensus_score=35.1	frequency=1	major_base=C	major_cov=5/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/8
RA	4209	.	1	1086794	0	A	G	consensus_score=118.6	frequency=1	major_base=G	major_cov=17/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/25
RA	4210	.	1	1087288	0	G	T	consensus_score=28.0	frequency=1	major_base=T	major_cov=5/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/7
RA	4211	.	1	1090820	0	G	A	consensus_score=33.7	frequency=1	major_base=A	major_cov=9/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/5
RA	4212	.	1	1096762	0	T	C	consensus_score=168.2	frequency=1	major_base=C	major_cov=26/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/33
RA	4213	.	1	1097218	0	G	A	bias_e_value=948.214	bias_p_value=0.00044723	consensus_reject=FREQUENCY_CUTOFF	consensus_score=106.1	fisher_strand_p_value=4.02138e-05	frequency=2.836e-01	ks_quality_p_value=1	major_base=G	major_cov=24/24	major_frequency=7.164e-01	minor_base=A	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=2.836e-01	polymorphism_score=12.6	prediction=polymorphism	ref_cov=24/24	total_cov=24/44
RA	4214	.	1	1100671	0	T	C	consensus_score=177.7	frequency=1	major_base=C	major_cov=29/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/34
RA	4215	.	1	1101181	0	T	G	consensus_score=231.2	frequency=1	major_base=G	major_cov=27/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/50
RA	4216	.	1	1101281	0	A	G	consensus_score=115.7	frequency=1	major_base=G	major_cov=16/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/25
RA	4217	.	1	1101878	0	T	C	consensus_score=203.6	frequency=1	major_base=C	major_cov=36/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/32
RA	4218	.	1	1103406	0	A	G	bias_e_value=2120200	bias_p_value=1	consensus_score=201.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=31/41	major_frequency=9.863e-01	minor_base=T	minor_cov=0/1	new_cov=31/41	polymorphism_frequency=9.863e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/42
RA	4219	.	1	1105052	0	T	.	consensus_score=297.9	frequency=1	major_base=.	major_cov=40/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/30
RA	4220	.	1	1107637	0	G	A	consensus_score=212.5	frequency=1	major_base=A	major_cov=31/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/44
RA	4221	.	1	1109518	0	T	C	consensus_score=266.0	frequency=1	major_base=C	major_cov=51/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/39
RA	4222	.	1	1111876	0	G	A	bias_e_value=1565420	bias_p_value=0.738338	consensus_score=242.2	fisher_strand_p_value=0.372093	frequency=1	ks_quality_p_value=0.995632	major_base=A	major_cov=54/31	major_frequency=9.884e-01	minor_base=G	minor_cov=0/1	new_cov=54/31	polymorphism_frequency=9.884e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=54/32
RA	4223	.	1	1113729	0	C	T	bias_e_value=2120080	bias_p_value=0.999947	consensus_score=325.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.989757	major_base=T	major_cov=57/54	major_frequency=9.911e-01	minor_base=C	minor_cov=1/0	new_cov=57/54	polymorphism_frequency=9.911e-01	polymorphism_score=-5.0	prediction=consensus	ref_cov=1/0	total_cov=58/54
RA	4224	.	1	1116392	0	C	T	bias_e_value=845485	bias_p_value=0.398777	consensus_score=175.8	fisher_strand_p_value=0.131745	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=38/31	major_frequency=9.452e-01	minor_base=G	minor_cov=4/0	new_cov=38/31	polymorphism_frequency=9.452e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/31
RA	4225	.	1	1116681	0	G	A	consensus_score=214.7	frequency=1	major_base=A	major_cov=40/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/36
RA	4226	.	1	1117504	0	T	C	consensus_score=233.4	frequency=1	major_base=C	major_cov=43/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/38
RA	4227	.	1	1117603	0	T	G	consensus_score=222.7	frequency=1	major_base=G	major_cov=28/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/47
RA	4228	.	1	1120133	0	C	T	consensus_score=144.9	frequency=1	major_base=T	major_cov=21/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/29
RA	4229	.	1	1120566	0	C	T	consensus_score=48.8	frequency=1	major_base=T	major_cov=13/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/6
RA	4230	.	1	1122392	0	C	T	consensus_score=250.0	frequency=1	major_base=T	major_cov=57/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/39
RA	4231	.	1	1122573	0	C	T	consensus_score=325.4	frequency=1	major_base=T	major_cov=60/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/49
RA	4232	.	1	1124136	0	T	C	consensus_score=312.8	frequency=1	major_base=C	major_cov=52/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/50
RA	4233	.	1	1126361	0	G	C	consensus_score=180.1	frequency=1	major_base=C	major_cov=28/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/34
RA	4234	.	1	1126605	0	T	G	consensus_score=230.2	frequency=1	major_base=G	major_cov=44/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/38
RA	4235	.	1	1126611	0	G	A	consensus_score=243.8	frequency=1	major_base=A	major_cov=44/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/39
RA	4236	.	1	1129738	0	C	T	consensus_score=228.0	frequency=1	major_base=T	major_cov=38/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/42
RA	4237	.	1	1129901	0	A	G	consensus_score=240.1	frequency=1	major_base=G	major_cov=45/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/41
RA	4238	.	1	1131736	0	A	G	consensus_score=303.6	frequency=1	major_base=G	major_cov=61/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/45
RA	4239	.	1	1131881	0	T	C	consensus_score=307.2	frequency=1	major_base=C	major_cov=55/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/49
RA	4240	.	1	1134072	0	G	A	consensus_score=240.2	frequency=1	major_base=A	major_cov=50/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/35
RA	4241	.	1	1134180	0	A	G	bias_e_value=2120200	bias_p_value=1	consensus_score=306.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=58/43	major_frequency=9.902e-01	minor_base=C	minor_cov=1/0	new_cov=58/43	polymorphism_frequency=9.902e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/43
RA	4242	.	1	1134439	0	C	T	consensus_score=258.4	frequency=1	major_base=T	major_cov=43/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/44
RA	4243	.	1	1135939	0	A	C	consensus_score=215.2	frequency=1	major_base=C	major_cov=42/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/33
RA	4244	.	1	1137379	0	G	A	consensus_score=244.0	frequency=1	major_base=A	major_cov=43/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/43
RA	4245	.	1	1137491	0	G	A	bias_e_value=2120190	bias_p_value=1	consensus_score=251.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.99975	major_base=A	major_cov=51/38	major_frequency=9.889e-01	minor_base=G	minor_cov=1/0	new_cov=51/38	polymorphism_frequency=9.889e-01	polymorphism_score=-4.9	prediction=consensus	ref_cov=1/0	total_cov=52/38
RA	4246	.	1	1137804	0	A	T	consensus_score=309.4	frequency=1	major_base=T	major_cov=56/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/51
RA	4247	.	1	1138460	0	C	A	consensus_score=226.9	frequency=1	major_base=A	major_cov=37/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/40
RA	4248	.	1	1138783	0	G	T	consensus_score=266.5	frequency=1	major_base=T	major_cov=45/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/51
RA	4249	.	1	1139322	0	A	.	consensus_score=391.3	frequency=1	major_base=.	major_cov=42/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/50
RA	4250	.	1	1140784	0	A	G	consensus_score=151.8	frequency=1	major_base=G	major_cov=29/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/25
RA	4251	.	1	1141036	0	A	G	consensus_score=208.7	frequency=1	major_base=G	major_cov=36/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/34
RA	4252	.	1	1142178	0	G	A	bias_e_value=0.00218419	bias_p_value=1.03019e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=90.8	fisher_strand_p_value=4.13584e-11	frequency=3.065e-01	ks_quality_p_value=1	major_base=G	major_cov=6/37	major_frequency=6.935e-01	minor_base=A	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=3.065e-01	polymorphism_score=13.1	prediction=polymorphism	ref_cov=6/37	total_cov=26/37
RA	4253	.	1	1142578	0	T	C	consensus_score=247.4	frequency=1	major_base=C	major_cov=48/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/35
RA	4254	.	1	1147930	0	A	G	consensus_score=98.0	frequency=1	major_base=G	major_cov=16/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/20
RA	4255	.	1	1147932	0	A	G	consensus_score=99.9	frequency=1	major_base=G	major_cov=16/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/20
RA	4256	.	1	1148135	0	T	C	consensus_score=170.2	frequency=1	major_base=C	major_cov=33/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/26
RA	4257	.	1	1149350	0	A	C	consensus_score=205.5	frequency=1	major_base=C	major_cov=34/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/37
RA	4258	.	1	1150382	0	G	A	consensus_score=291.2	frequency=1	major_base=A	major_cov=46/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/55
RA	4259	.	1	1151714	0	T	G	bias_e_value=1709010	bias_p_value=0.806063	consensus_score=234.0	fisher_strand_p_value=0.447059	frequency=1	ks_quality_p_value=0.997482	major_base=G	major_cov=37/47	major_frequency=9.882e-01	minor_base=C	minor_cov=1/0	new_cov=37/47	polymorphism_frequency=9.882e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/47
RA	4260	.	1	1151954	0	T	C	bias_e_value=2120180	bias_p_value=0.999994	consensus_score=129.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.99646	major_base=C	major_cov=19/28	major_frequency=9.792e-01	minor_base=G	minor_cov=0/1	new_cov=19/28	polymorphism_frequency=9.792e-01	polymorphism_score=-6.3	prediction=consensus	ref_cov=0/0	total_cov=19/29
RA	4261	.	1	1152036	0	T	.	consensus_score=152.6	frequency=1	major_base=.	major_cov=15/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/22
RA	4262	.	1	1154288	0	A	C	consensus_score=247.3	frequency=1	major_base=C	major_cov=47/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/34
RA	4263	.	1	1155947	0	A	G	consensus_score=282.2	frequency=1	major_base=G	major_cov=51/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/46
RA	4264	.	1	1157521	0	T	C	consensus_score=248.5	frequency=1	major_base=C	major_cov=44/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/38
RA	4265	.	1	1160045	0	A	G	consensus_score=190.8	frequency=1	major_base=G	major_cov=29/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/37
RA	4266	.	1	1161805	0	G	A	consensus_score=219.1	frequency=1	major_base=A	major_cov=36/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/41
RA	4267	.	1	1162685	0	C	T	consensus_score=251.5	frequency=1	major_base=T	major_cov=44/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/40
RA	4268	.	1	1163133	0	T	C	bias_e_value=2120200	bias_p_value=1	consensus_score=252.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=38/52	major_frequency=9.890e-01	minor_base=T	minor_cov=0/1	new_cov=38/52	polymorphism_frequency=9.890e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=38/53
RA	4269	.	1	1163898	0	T	C	consensus_score=209.5	frequency=1	major_base=C	major_cov=40/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/31
RA	4270	.	1	1165104	0	G	A	consensus_score=268.1	frequency=1	major_base=A	major_cov=51/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/43
RA	4271	.	1	1165299	0	A	G	consensus_score=287.5	frequency=1	major_base=G	major_cov=57/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/45
RA	4272	.	1	1167274	0	C	A	consensus_score=330.8	frequency=1	major_base=A	major_cov=54/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/57
RA	4273	.	1	1169400	0	T	G	consensus_score=171.1	frequency=1	major_base=G	major_cov=33/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/28
RA	4274	.	1	1169888	0	C	A	bias_e_value=2120200	bias_p_value=1	consensus_score=232.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=36/48	major_frequency=9.882e-01	minor_base=G	minor_cov=0/1	new_cov=36/48	polymorphism_frequency=9.882e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/49
RA	4275	.	1	1171915	0	C	T	consensus_score=236.4	frequency=1	major_base=T	major_cov=39/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/45
RA	4276	.	1	1172728	0	C	T	consensus_score=291.4	frequency=1	major_base=T	major_cov=47/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/51
RA	4277	.	1	1173743	0	T	C	consensus_score=247.9	frequency=1	major_base=C	major_cov=46/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/36
RA	4278	.	1	1174460	0	A	G	consensus_score=137.6	frequency=1	major_base=G	major_cov=20/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/26
RA	4279	.	1	1174866	0	A	G	consensus_score=221.7	frequency=1	major_base=G	major_cov=31/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/43
RA	4280	.	1	1175209	0	A	G	consensus_score=182.0	frequency=1	major_base=G	major_cov=34/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/30
RA	4281	.	1	1176838	0	C	T	bias_e_value=1741640	bias_p_value=0.821455	consensus_score=158.9	fisher_strand_p_value=0.465517	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=31/26	major_frequency=9.828e-01	minor_base=C	minor_cov=0/1	new_cov=31/26	polymorphism_frequency=9.828e-01	polymorphism_score=-5.6	prediction=consensus	ref_cov=0/1	total_cov=31/27
RA	4282	.	1	1182741	0	T	G	consensus_score=213.4	frequency=1	major_base=G	major_cov=31/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/40
RA	4283	.	1	1183770	0	A	C	consensus_score=317.1	frequency=1	major_base=C	major_cov=60/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/49
RA	4284	.	1	1189035	0	G	A	consensus_score=202.1	frequency=1	major_base=A	major_cov=27/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/45
RA	4285	.	1	1189731	1	.	A	bias_e_value=1460480	bias_p_value=0.688842	consensus_score=176.7	fisher_strand_p_value=0.34375	frequency=1	ks_quality_p_value=0.941746	major_base=A	major_cov=42/21	major_frequency=9.844e-01	minor_base=.	minor_cov=0/1	new_cov=42/21	polymorphism_frequency=9.844e-01	polymorphism_score=-3.4	prediction=consensus	ref_cov=0/1	total_cov=42/22
RA	4286	.	1	1189918	0	A	G	consensus_score=276.1	frequency=1	major_base=G	major_cov=50/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/42
RA	4287	.	1	1190423	0	G	A	consensus_score=284.2	frequency=1	major_base=A	major_cov=43/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/56
RA	4288	.	1	1190635	0	A	G	consensus_score=204.0	frequency=1	major_base=G	major_cov=35/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/35
RA	4289	.	1	1190743	0	A	C	consensus_score=70.2	frequency=1	major_base=C	major_cov=14/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/12
RA	4290	.	1	1191158	0	G	A	consensus_score=256.4	frequency=1	major_base=A	major_cov=43/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/47
RA	4291	.	1	1193675	0	G	T	consensus_score=301.5	frequency=1	major_base=T	major_cov=54/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/48
RA	4292	.	1	1195528	0	A	G	consensus_score=255.2	frequency=1	major_base=G	major_cov=35/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/54
RA	4293	.	1	1197822	0	G	A	consensus_score=242.1	frequency=1	major_base=A	major_cov=35/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/47
RA	4294	.	1	1198284	0	C	T	consensus_score=239.7	frequency=1	major_base=T	major_cov=31/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/49
RA	4295	.	1	1198533	0	T	C	consensus_score=249.7	frequency=1	major_base=C	major_cov=40/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/47
RA	4296	.	1	1199857	0	T	C	bias_e_value=1708750	bias_p_value=0.805941	consensus_score=218.5	fisher_strand_p_value=0.445783	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=36/46	major_frequency=9.880e-01	minor_base=G	minor_cov=1/0	new_cov=36/46	polymorphism_frequency=9.880e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/46
RA	4297	.	1	1200079	0	C	T	consensus_score=235.9	frequency=1	major_base=T	major_cov=51/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/30
RA	4298	.	1	1202990	0	C	T	consensus_score=322.4	frequency=1	major_base=T	major_cov=49/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/59
RA	4299	.	1	1203885	0	A	C	consensus_score=260.8	frequency=1	major_base=C	major_cov=42/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/48
RA	4300	.	1	1204511	0	A	G	consensus_score=44.9	deleted=1	frequency=1	major_base=G	major_cov=12/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/5
RA	4301	.	1	1204880	0	G	T	consensus_score=110.8	frequency=1	major_base=T	major_cov=13/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/28
RA	4302	.	1	1204909	0	G	C	consensus_score=72.3	frequency=1	major_base=C	major_cov=9/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/18
RA	4303	.	1	1204912	0	A	G	consensus_score=74.3	frequency=1	major_base=G	major_cov=9/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/18
RA	4304	.	1	1204918	0	G	A	consensus_score=73.8	frequency=1	major_base=A	major_cov=9/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/18
RA	4305	.	1	1204933	0	T	C	consensus_score=58.7	frequency=1	major_base=C	major_cov=6/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/16
RA	4306	.	1	1207147	0	G	A	consensus_score=304.8	frequency=1	major_base=A	major_cov=54/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/48
RA	4307	.	1	1212997	0	A	C	consensus_score=228.1	frequency=1	major_base=C	major_cov=36/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/43
RA	4308	.	1	1217408	0	A	C	consensus_score=183.0	frequency=1	major_base=C	major_cov=23/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/38
RA	4309	.	1	1222067	0	A	G	consensus_score=272.7	frequency=1	major_base=G	major_cov=49/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/46
RA	4310	.	1	1222976	0	C	T	bias_e_value=2120200	bias_p_value=1	consensus_score=286.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=57/47	major_frequency=9.905e-01	minor_base=C	minor_cov=1/0	new_cov=57/47	polymorphism_frequency=9.905e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=58/47
RA	4311	.	1	1223606	0	C	T	bias_e_value=0.00167502	bias_p_value=7.90033e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=96.6	fisher_strand_p_value=3.13689e-11	frequency=3.038e-01	ks_quality_p_value=1	major_base=C	major_cov=13/42	major_frequency=6.962e-01	minor_base=T	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=3.038e-01	polymorphism_score=18.0	prediction=polymorphism	ref_cov=13/42	total_cov=37/42
RA	4312	.	1	1223631	0	C	T	bias_e_value=6.66925e-08	bias_p_value=3.14558e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=78.1	fisher_strand_p_value=8.81997e-16	frequency=3.875e-01	ks_quality_p_value=1	major_base=C	major_cov=7/42	major_frequency=6.125e-01	minor_base=T	minor_cov=31/0	new_cov=31/0	polymorphism_frequency=3.875e-01	polymorphism_score=25.9	prediction=polymorphism	ref_cov=7/42	total_cov=39/42
RA	4313	.	1	1223663	0	G	T	bias_e_value=1.17748	bias_p_value=5.55365e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=154.3	fisher_strand_p_value=3.03294e-08	frequency=2.432e-01	ks_quality_p_value=1	major_base=G	major_cov=16/40	major_frequency=7.568e-01	minor_base=T	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.432e-01	polymorphism_score=10.7	prediction=polymorphism	ref_cov=16/40	total_cov=34/40
RA	4314	.	1	1225157	0	C	T	consensus_score=158.7	frequency=1	major_base=T	major_cov=28/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/26
RA	4315	.	1	1227095	0	T	C	consensus_score=109.0	frequency=1	major_base=C	major_cov=16/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/21
RA	4316	.	1	1227133	0	C	A	consensus_score=103.3	frequency=1	major_base=A	major_cov=19/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/16
RA	4317	.	1	1228689	0	C	T	consensus_score=61.4	frequency=1	major_base=T	major_cov=8/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/15
RA	4318	.	1	1228821	0	C	T	consensus_score=152.0	frequency=1	major_base=T	major_cov=25/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/28
RA	4319	.	1	1229002	0	A	T	consensus_score=231.6	frequency=1	major_base=T	major_cov=49/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/32
RA	4320	.	1	1230165	0	C	T	consensus_score=347.0	frequency=1	major_base=T	major_cov=47/75	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/75	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/75
RA	4321	.	1	1231647	0	T	C	bias_e_value=1640090	bias_p_value=0.773558	consensus_score=312.9	fisher_strand_p_value=0.407767	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=41/61	major_frequency=9.903e-01	minor_base=A	minor_cov=1/0	new_cov=41/61	polymorphism_frequency=9.903e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/61
RA	4322	.	1	1232512	0	C	T	consensus_score=291.5	frequency=1	major_base=T	major_cov=51/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/48
RA	4323	.	1	1237163	0	C	A	consensus_score=265.1	frequency=1	major_base=A	major_cov=40/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/53
RA	4324	.	1	1241746	0	C	T	bias_e_value=1639410	bias_p_value=0.773235	consensus_score=214.1	fisher_strand_p_value=0.407407	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=32/48	major_frequency=9.877e-01	minor_base=C	minor_cov=1/0	new_cov=32/48	polymorphism_frequency=9.877e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=35/48
RA	4325	.	1	1244705	0	C	T	consensus_score=227.4	frequency=1	major_base=T	major_cov=32/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/45
RA	4326	.	1	1247595	0	T	G	consensus_score=234.8	frequency=1	major_base=G	major_cov=39/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/40
RA	4327	.	1	1247785	0	C	.	consensus_score=290.6	frequency=1	major_base=.	major_cov=39/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/30
RA	4328	.	1	1247929	0	G	A	consensus_score=230.7	frequency=1	major_base=A	major_cov=33/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/45
RA	4329	.	1	1248097	0	T	C	consensus_score=276.9	frequency=1	major_base=C	major_cov=44/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/51
RA	4330	.	1	1248410	0	T	C	bias_e_value=1727320	bias_p_value=0.814699	consensus_score=239.1	fisher_strand_p_value=0.45679	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=44/36	major_frequency=9.877e-01	minor_base=T	minor_cov=0/1	new_cov=44/36	polymorphism_frequency=9.877e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=44/37
RA	4331	.	1	1248942	0	G	C	consensus_score=159.6	frequency=1	major_base=C	major_cov=21/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/36
RA	4332	.	1	1249979	0	T	G	consensus_score=95.9	frequency=1	major_base=G	major_cov=19/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/15
RA	4333	.	1	1250035	0	G	A	consensus_score=52.5	deleted=1	frequency=1	major_base=A	major_cov=14/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/6
RA	4334	.	1	1250045	0	G	A	consensus_score=29.5	deleted=1	frequency=1	major_base=A	major_cov=9/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/3
RA	4335	.	1	1253428	0	T	C	consensus_score=196.2	frequency=1	major_base=C	major_cov=26/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/44
RA	4336	.	1	1255865	0	A	G	consensus_score=162.2	frequency=1	major_base=G	major_cov=29/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/25
RA	4337	.	1	1258049	0	G	A	consensus_score=205.1	frequency=1	major_base=A	major_cov=35/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/37
RA	4338	.	1	1258263	0	C	T	consensus_score=283.9	frequency=1	major_base=T	major_cov=53/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/46
RA	4339	.	1	1259088	0	T	C	consensus_score=223.7	frequency=1	major_base=C	major_cov=37/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/37
RA	4340	.	1	1261780	0	G	T	consensus_score=238.8	frequency=1	major_base=T	major_cov=34/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/50
RA	4341	.	1	1261852	0	C	T	consensus_score=274.5	frequency=1	major_base=T	major_cov=41/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/52
RA	4342	.	1	1262120	0	C	T	consensus_score=308.8	frequency=1	major_base=T	major_cov=53/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/54
RA	4343	.	1	1262835	0	A	G	consensus_score=254.1	frequency=1	major_base=G	major_cov=48/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/36
RA	4344	.	1	1263388	0	C	T	consensus_score=237.9	frequency=1	major_base=T	major_cov=38/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/46
RA	4345	.	1	1265402	0	T	C	consensus_score=244.0	frequency=1	major_base=C	major_cov=41/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/43
RA	4346	.	1	1266943	0	C	T	consensus_score=242.7	frequency=1	major_base=T	major_cov=41/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/42
RA	4347	.	1	1267450	0	G	A	bias_e_value=1764500	bias_p_value=0.832234	consensus_score=278.9	fisher_strand_p_value=0.48	frequency=1	ks_quality_p_value=0.999798	major_base=A	major_cov=52/47	major_frequency=9.900e-01	minor_base=C	minor_cov=0/1	new_cov=52/47	polymorphism_frequency=9.900e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/48
RA	4348	.	1	1267971	0	A	C	bias_e_value=2120190	bias_p_value=1	consensus_score=264.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999045	major_base=C	major_cov=48/43	major_frequency=9.891e-01	minor_base=A	minor_cov=1/0	new_cov=48/43	polymorphism_frequency=9.891e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=49/43
RA	4349	.	1	1273694	0	A	G	bias_e_value=2120200	bias_p_value=1	consensus_score=282.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=54/44	major_frequency=9.899e-01	minor_base=A	minor_cov=1/0	new_cov=54/44	polymorphism_frequency=9.899e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=55/44
RA	4350	.	1	1275304	0	T	C	consensus_score=250.7	frequency=1	major_base=C	major_cov=50/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/36
RA	4351	.	1	1276385	0	C	T	consensus_score=226.8	frequency=1	major_base=T	major_cov=32/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/48
RA	4352	.	1	1277426	1	.	T	consensus_score=202.4	frequency=1	major_base=T	major_cov=43/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/28
RA	4353	.	1	1277426	2	.	G	consensus_score=213.3	frequency=1	major_base=G	major_cov=43/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/28
RA	4354	.	1	1278303	0	T	C	consensus_score=239.2	frequency=1	major_base=C	major_cov=53/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/33
RA	4355	.	1	1278402	0	A	C	consensus_score=264.5	frequency=1	major_base=C	major_cov=49/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/41
RA	4356	.	1	1278456	0	G	T	consensus_score=248.4	frequency=1	major_base=T	major_cov=48/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/38
RA	4357	.	1	1280179	0	G	A	consensus_score=205.8	frequency=1	major_base=A	major_cov=36/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/35
RA	4358	.	1	1284605	0	A	G	consensus_score=169.1	frequency=1	major_base=G	major_cov=32/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/27
RA	4359	.	1	1286089	0	A	G	bias_e_value=2120200	bias_p_value=1	consensus_score=307.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=55/47	major_frequency=9.903e-01	minor_base=T	minor_cov=1/0	new_cov=55/47	polymorphism_frequency=9.903e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/47
RA	4360	.	1	1288392	0	G	A	consensus_score=157.8	frequency=1	major_base=A	major_cov=28/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/26
RA	4361	.	1	1289092	0	A	G	consensus_score=171.3	frequency=1	major_base=G	major_cov=33/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/27
RA	4362	.	1	1289721	0	A	G	consensus_score=192.3	frequency=1	major_base=G	major_cov=25/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/41
RA	4363	.	1	1290199	0	G	T	consensus_score=222.0	frequency=1	major_base=T	major_cov=37/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/38
RA	4364	.	1	1292695	0	A	C	consensus_score=132.0	frequency=1	major_base=C	major_cov=21/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/23
RA	4365	.	1	1293638	0	T	C	consensus_score=163.1	frequency=1	major_base=C	major_cov=25/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/28
RA	4366	.	1	1294580	0	A	G	consensus_score=153.9	frequency=1	major_base=G	major_cov=29/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/25
RA	4367	.	1	1295009	0	A	G	consensus_score=76.2	frequency=1	major_base=G	major_cov=12/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/14
RA	4368	.	1	1295167	0	T	C	consensus_score=60.5	frequency=1	major_base=C	major_cov=16/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/6
RA	4369	.	1	1295185	0	A	C	consensus_score=57.1	frequency=1	major_base=C	major_cov=14/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/6
RA	4370	.	1	1295197	0	A	T	consensus_score=58.4	frequency=1	major_base=T	major_cov=14/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/8
RA	4371	.	1	1295214	0	C	A	consensus_score=90.2	frequency=1	major_base=A	major_cov=23/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/10
RA	4372	.	1	1295234	0	A	T	consensus_score=88.5	frequency=1	major_base=T	major_cov=21/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/12
RA	4373	.	1	1295235	0	C	T	consensus_score=92.0	frequency=1	major_base=T	major_cov=21/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/12
RA	4374	.	1	1295236	0	C	T	consensus_score=89.1	frequency=1	major_base=T	major_cov=21/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/12
RA	4375	.	1	1295237	0	A	G	consensus_score=98.7	frequency=1	major_base=G	major_cov=21/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/12
RA	4376	.	1	1295305	0	G	C	consensus_score=100.4	frequency=1	major_base=C	major_cov=21/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/16
RA	4377	.	1	1295311	0	A	G	consensus_score=128.6	frequency=1	major_base=G	major_cov=26/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/18
RA	4378	.	1	1295345	0	T	C	consensus_score=160.3	frequency=1	major_base=C	major_cov=29/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/25
RA	4379	.	1	1295347	0	A	C	consensus_score=157.3	frequency=1	major_base=C	major_cov=28/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/25
RA	4380	.	1	1295791	0	T	C	consensus_score=138.6	frequency=1	major_base=C	major_cov=22/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/24
RA	4381	.	1	1295938	0	A	G	consensus_score=165.9	frequency=1	major_base=G	major_cov=30/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/28
RA	4382	.	1	1295968	0	G	C	consensus_score=156.9	frequency=1	major_base=C	major_cov=29/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/24
RA	4383	.	1	1295977	0	T	C	consensus_score=164.7	frequency=1	major_base=C	major_cov=30/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/25
RA	4384	.	1	1295981	0	T	C	consensus_score=145.9	frequency=1	major_base=C	major_cov=26/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/23
RA	4385	.	1	1295987	0	C	T	consensus_score=116.9	frequency=1	major_base=T	major_cov=18/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/22
RA	4386	.	1	1296169	0	A	T	consensus_score=132.4	frequency=1	major_base=T	major_cov=24/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/22
RA	4387	.	1	1296170	0	C	T	consensus_score=133.5	frequency=1	major_base=T	major_cov=24/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/22
RA	4388	.	1	1296205	0	G	A	consensus_score=157.2	frequency=1	major_base=A	major_cov=29/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/27
RA	4389	.	1	1296230	0	A	T	consensus_score=148.9	frequency=1	major_base=T	major_cov=28/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/25
RA	4390	.	1	1296250	0	G	C	consensus_score=151.8	frequency=1	major_base=C	major_cov=25/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/26
RA	4391	.	1	1296253	0	C	T	consensus_score=143.2	frequency=1	major_base=T	major_cov=25/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/26
RA	4392	.	1	1296270	0	C	T	consensus_score=150.7	frequency=1	major_base=T	major_cov=24/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/28
RA	4393	.	1	1297239	0	T	G	consensus_score=101.0	frequency=1	major_base=G	major_cov=19/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/17
RA	4394	.	1	1297329	0	C	A	consensus_score=169.2	frequency=1	major_base=A	major_cov=30/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/30
RA	4395	.	1	1297335	0	G	A	consensus_score=166.6	frequency=1	major_base=A	major_cov=30/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/30
RA	4396	.	1	1299538	0	C	T	consensus_score=65.6	frequency=1	major_base=T	major_cov=9/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/16
RA	4397	.	1	1300164	0	C	T	consensus_score=140.5	frequency=1	major_base=T	major_cov=31/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/17
RA	4398	.	1	1301279	0	A	C	consensus_score=118.7	frequency=1	major_base=C	major_cov=21/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/19
RA	4399	.	1	1302439	0	G	A	consensus_score=11.8	deleted=1	frequency=1	major_base=A	major_cov=3/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/3
RA	4400	.	1	1302448	0	T	G	consensus_score=11.7	deleted=1	frequency=1	major_base=G	major_cov=3/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/3
RA	4401	.	1	1302451	0	T	A	consensus_score=11.4	deleted=1	frequency=1	major_base=A	major_cov=3/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/3
RA	4402	.	1	1302454	0	T	C	consensus_score=11.6	deleted=1	frequency=1	major_base=C	major_cov=3/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/3
RA	4403	.	1	1302457	0	C	T	consensus_score=12.1	deleted=1	frequency=1	major_base=T	major_cov=3/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/3
RA	4404	.	1	1302459	0	A	C	consensus_score=11.4	deleted=1	frequency=1	major_base=C	major_cov=3/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/3
RA	4405	.	1	1302463	0	T	A	consensus_score=12.2	deleted=1	frequency=1	major_base=A	major_cov=3/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/3
RA	4406	.	1	1302466	0	T	G	consensus_score=11.9	deleted=1	frequency=1	major_base=G	major_cov=3/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/3
RA	4407	.	1	1302469	0	G	T	consensus_score=11.0	deleted=1	frequency=1	major_base=T	major_cov=3/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/3
RA	4408	.	1	1302484	0	A	G	consensus_score=78.1	frequency=1	major_base=G	major_cov=13/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/16
RA	4409	.	1	1302493	0	G	A	consensus_score=86.7	frequency=1	major_base=A	major_cov=13/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/17
RA	4410	.	1	1302496	0	T	G	consensus_score=82.7	frequency=1	major_base=G	major_cov=13/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/17
RA	4411	.	1	1302547	0	T	G	consensus_score=128.7	frequency=1	major_base=G	major_cov=19/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/26
RA	4412	.	1	1302565	0	T	C	consensus_score=153.0	frequency=1	major_base=C	major_cov=22/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/30
RA	4413	.	1	1302624	0	T	C	consensus_score=215.7	frequency=1	major_base=C	major_cov=35/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/36
RA	4414	.	1	1302667	0	A	G	consensus_score=188.3	frequency=1	major_base=G	major_cov=32/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/30
RA	4415	.	1	1302668	0	A	T	consensus_score=174.0	frequency=1	major_base=T	major_cov=32/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/30
RA	4416	.	1	1302669	0	T	A	consensus_score=174.4	frequency=1	major_base=A	major_cov=32/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/30
RA	4417	.	1	1302675	0	T	C	consensus_score=178.9	frequency=1	major_base=C	major_cov=32/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/30
RA	4418	.	1	1302677	0	A	C	consensus_score=182.3	frequency=1	major_base=C	major_cov=32/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/30
RA	4419	.	1	1302678	0	T	C	consensus_score=183.4	frequency=1	major_base=C	major_cov=32/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/30
RA	4420	.	1	1302687	0	G	A	bias_e_value=2120190	bias_p_value=1	consensus_score=221.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=40/38	major_frequency=9.873e-01	minor_base=C	minor_cov=1/0	new_cov=40/38	polymorphism_frequency=9.873e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/38
RA	4421	.	1	1302704	0	C	A	consensus_score=213.8	frequency=1	major_base=A	major_cov=38/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/38
RA	4422	.	1	1302715	0	G	A	consensus_score=216.8	frequency=1	major_base=A	major_cov=41/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/36
RA	4423	.	1	1302716	0	G	A	consensus_score=217.6	frequency=1	major_base=A	major_cov=41/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/36
RA	4424	.	1	1302728	0	T	C	consensus_score=214.1	frequency=1	major_base=C	major_cov=39/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/35
RA	4425	.	1	1302730	0	A	T	consensus_score=209.2	frequency=1	major_base=T	major_cov=39/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/35
RA	4426	.	1	1302731	0	T	C	consensus_score=223.9	frequency=1	major_base=C	major_cov=39/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/35
RA	4427	.	1	1302737	0	G	A	consensus_score=212.7	frequency=1	major_base=A	major_cov=40/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/36
RA	4428	.	1	1302751	0	A	G	consensus_score=215.7	frequency=1	major_base=G	major_cov=40/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/35
RA	4429	.	1	1302753	0	G	A	consensus_score=223.2	frequency=1	major_base=A	major_cov=40/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/35
RA	4430	.	1	1303792	0	G	T	consensus_score=180.2	frequency=1	major_base=T	major_cov=36/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/28
RA	4431	.	1	1303817	0	G	A	bias_e_value=1654060	bias_p_value=0.780145	consensus_score=186.9	fisher_strand_p_value=0.415385	frequency=1	ks_quality_p_value=0.999519	major_base=A	major_cov=38/26	major_frequency=9.846e-01	minor_base=G	minor_cov=0/1	new_cov=38/26	polymorphism_frequency=9.846e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=38/27
RA	4432	.	1	1305414	0	T	C	consensus_score=223.8	frequency=1	major_base=C	major_cov=40/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/37
RA	4433	.	1	1306878	0	A	G	consensus_score=77.9	frequency=1	major_base=G	major_cov=15/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/12
RA	4434	.	1	1309281	0	G	A	consensus_score=174.3	frequency=1	major_base=A	major_cov=29/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/34
RA	4435	.	1	1309778	0	T	C	consensus_score=237.1	frequency=1	major_base=C	major_cov=44/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/36
RA	4436	.	1	1311569	0	A	G	bias_e_value=1375860	bias_p_value=0.648932	consensus_score=136.5	fisher_strand_p_value=0.544227	frequency=1	ks_quality_p_value=0.532789	major_base=G	major_cov=19/32	major_frequency=9.444e-01	minor_base=A	minor_cov=0/3	new_cov=19/32	polymorphism_frequency=9.444e-01	polymorphism_score=-1.0	prediction=consensus	ref_cov=0/3	total_cov=19/35
RA	4437	.	1	1312578	0	C	A	bias_e_value=2115340	bias_p_value=0.997709	consensus_score=52.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.93308	major_base=A	major_cov=7/14	major_frequency=9.545e-01	minor_base=G	minor_cov=0/1	new_cov=7/14	polymorphism_frequency=9.545e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=0/0	total_cov=7/15
RA	4438	.	1	1312755	0	T	C	consensus_score=92.6	frequency=1	major_base=C	major_cov=17/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/16
RA	4439	.	1	1312858	0	T	C	consensus_score=77.3	frequency=1	major_base=C	major_cov=16/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/11
RA	4440	.	1	1312911	0	A	C	consensus_score=59.6	frequency=1	major_base=C	major_cov=14/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/7
RA	4441	.	1	1313170	0	T	G	consensus_score=99.2	frequency=1	major_base=G	major_cov=17/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/16
RA	4442	.	1	1318864	0	T	C	consensus_score=282.2	frequency=1	major_base=C	major_cov=47/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/45
RA	4443	.	1	1319007	0	G	A	bias_e_value=1695790	bias_p_value=0.799825	consensus_score=261.2	fisher_strand_p_value=0.44086	frequency=1	ks_quality_p_value=0.994173	major_base=A	major_cov=52/40	major_frequency=9.892e-01	minor_base=.	minor_cov=0/1	new_cov=52/40	polymorphism_frequency=9.892e-01	polymorphism_score=-3.4	prediction=consensus	ref_cov=0/0	total_cov=52/41
RA	4444	.	1	1320583	0	G	A	consensus_score=133.6	frequency=1	major_base=A	major_cov=27/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/21
RA	4445	.	1	1320928	0	G	A	consensus_score=144.2	frequency=1	major_base=A	major_cov=26/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/26
RA	4446	.	1	1322222	0	T	G	bias_e_value=5.50602e-05	bias_p_value=2.59694e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=88.6	fisher_strand_p_value=9.03845e-13	frequency=4.154e-01	ks_quality_p_value=1	major_base=T	major_cov=6/32	major_frequency=5.846e-01	minor_base=G	minor_cov=27/0	new_cov=27/0	polymorphism_frequency=4.154e-01	polymorphism_score=10.7	prediction=polymorphism	ref_cov=6/32	total_cov=33/32
RA	4447	.	1	1323630	0	G	T	consensus_score=98.2	frequency=1	major_base=T	major_cov=21/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/15
RA	4448	.	1	1324643	0	A	G	consensus_score=222.3	frequency=1	major_base=G	major_cov=42/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/36
RA	4449	.	1	1326250	0	G	A	consensus_score=237.8	frequency=1	major_base=A	major_cov=35/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/53
RA	4450	.	1	1327290	0	C	T	consensus_score=88.5	frequency=1	major_base=T	major_cov=13/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/21
RA	4451	.	1	1327549	0	C	T	consensus_score=137.7	frequency=1	major_base=T	major_cov=25/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/24
RA	4452	.	1	1327590	0	G	A	consensus_score=102.1	frequency=1	major_base=A	major_cov=17/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/20
RA	4453	.	1	1329512	0	C	G	consensus_score=228.4	frequency=1	major_base=G	major_cov=44/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/36
RA	4454	.	1	1331601	0	T	C	consensus_score=216.0	frequency=1	major_base=C	major_cov=41/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/33
RA	4455	.	1	1331955	0	T	C	bias_e_value=1685170	bias_p_value=0.794819	consensus_score=204.9	fisher_strand_p_value=0.432432	frequency=1	ks_quality_p_value=0.99963	major_base=C	major_cov=42/31	major_frequency=9.865e-01	minor_base=T	minor_cov=0/1	new_cov=42/31	polymorphism_frequency=9.865e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=42/32
RA	4456	.	1	1332880	0	C	T	bias_e_value=0.00483736	bias_p_value=2.28157e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=83.0	fisher_strand_p_value=9.47503e-11	frequency=2.407e-01	ks_quality_p_value=1	major_base=C	major_cov=2/39	major_frequency=7.593e-01	minor_base=T	minor_cov=13/0	new_cov=13/0	polymorphism_frequency=2.407e-01	polymorphism_score=11.1	prediction=polymorphism	ref_cov=2/39	total_cov=16/39
RA	4457	.	1	1332890	0	T	G	bias_e_value=497907	bias_p_value=0.23484	consensus_score=138.2	fisher_strand_p_value=0.0635919	frequency=1	ks_quality_p_value=0.977466	major_base=G	major_cov=12/40	major_frequency=9.630e-01	minor_base=C	minor_cov=2/0	new_cov=12/40	polymorphism_frequency=9.630e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=0/0	total_cov=14/40
RA	4458	.	1	1334647	0	T	G	consensus_score=239.6	frequency=1	major_base=G	major_cov=38/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/41
RA	4459	.	1	1335011	0	C	T	bias_e_value=2120190	bias_p_value=1	consensus_score=217.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999675	major_base=T	major_cov=30/48	major_frequency=9.873e-01	minor_base=C	minor_cov=0/1	new_cov=30/48	polymorphism_frequency=9.873e-01	polymorphism_score=-4.9	prediction=consensus	ref_cov=0/1	total_cov=30/49
RA	4460	.	1	1337135	0	T	C	consensus_score=198.0	frequency=1	major_base=C	major_cov=33/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/33
RA	4461	.	1	1338802	0	A	G	consensus_score=231.7	frequency=1	major_base=G	major_cov=38/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/42
RA	4462	.	1	1339258	0	A	G	consensus_score=216.5	frequency=1	major_base=G	major_cov=27/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/45
RA	4463	.	1	1340326	0	G	A	consensus_score=190.4	frequency=1	major_base=A	major_cov=36/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/31
RA	4464	.	1	1341568	0	G	A	bias_e_value=1308740	bias_p_value=0.617272	consensus_score=276.4	fisher_strand_p_value=0.351064	frequency=1	ks_quality_p_value=0.75559	major_base=A	major_cov=61/32	major_frequency=9.894e-01	minor_base=.	minor_cov=0/1	new_cov=61/32	polymorphism_frequency=9.894e-01	polymorphism_score=-3.6	prediction=consensus	ref_cov=0/0	total_cov=61/33
RA	4465	.	1	1341601	0	T	C	consensus_score=293.0	frequency=1	major_base=C	major_cov=65/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/32
RA	4466	.	1	1341822	0	T	C	bias_e_value=2120190	bias_p_value=1	consensus_score=274.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999781	major_base=C	major_cov=48/47	major_frequency=9.896e-01	minor_base=T	minor_cov=0/1	new_cov=48/47	polymorphism_frequency=9.896e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=48/48
RA	4467	.	1	1345462	0	T	G	consensus_score=249.7	frequency=1	major_base=G	major_cov=37/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/48
RA	4468	.	1	1345465	0	G	A	consensus_score=249.2	frequency=1	major_base=A	major_cov=37/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/48
RA	4469	.	1	1346865	0	T	G	consensus_score=247.9	frequency=1	major_base=G	major_cov=43/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/42
RA	4470	.	1	1347390	0	A	G	consensus_score=262.6	frequency=1	major_base=G	major_cov=48/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/43
RA	4471	.	1	1349077	0	C	T	bias_e_value=1681530	bias_p_value=0.793103	consensus_score=252.4	fisher_strand_p_value=0.430233	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=49/36	major_frequency=9.884e-01	minor_base=G	minor_cov=0/1	new_cov=49/36	polymorphism_frequency=9.884e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/37
RA	4472	.	1	1350742	0	T	C	consensus_score=230.1	frequency=1	major_base=C	major_cov=48/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/30
RA	4473	.	1	1351406	0	T	C	consensus_score=195.2	frequency=1	major_base=C	major_cov=35/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/33
RA	4474	.	1	1352962	0	G	A	consensus_score=215.7	frequency=1	major_base=A	major_cov=38/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/39
RA	4475	.	1	1354113	0	C	T	bias_e_value=1.02682e-05	bias_p_value=4.84306e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=128.2	fisher_strand_p_value=1.58944e-13	frequency=2.658e-01	ks_quality_p_value=1	major_base=C	major_cov=51/7	major_frequency=7.342e-01	minor_base=T	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=2.658e-01	polymorphism_score=13.4	prediction=polymorphism	ref_cov=51/7	total_cov=51/28
RA	4476	.	1	1355316	0	T	C	consensus_score=208.6	frequency=1	major_base=C	major_cov=39/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/41
RA	4477	.	1	1357381	0	A	G	consensus_score=288.2	frequency=1	major_base=G	major_cov=43/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/51
RA	4478	.	1	1358533	0	G	A	bias_e_value=2120190	bias_p_value=1	consensus_score=249.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999739	major_base=A	major_cov=36/51	major_frequency=9.886e-01	minor_base=C	minor_cov=0/1	new_cov=36/51	polymorphism_frequency=9.886e-01	polymorphism_score=-6.6	prediction=consensus	ref_cov=0/0	total_cov=36/52
RA	4479	.	1	1360409	0	T	C	consensus_score=199.7	frequency=1	major_base=C	major_cov=43/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/26
RA	4480	.	1	1364043	0	C	T	consensus_score=223.7	frequency=1	major_base=T	major_cov=40/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/38
RA	4481	.	1	1365666	0	C	T	consensus_score=262.3	frequency=1	major_base=T	major_cov=48/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/45
RA	4482	.	1	1366202	0	C	T	consensus_score=221.4	frequency=1	major_base=T	major_cov=36/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/43
RA	4483	.	1	1368273	0	C	T	consensus_score=229.5	frequency=1	major_base=T	major_cov=43/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/37
RA	4484	.	1	1369521	0	C	A	consensus_score=219.2	frequency=1	major_base=A	major_cov=41/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/36
RA	4485	.	1	1370295	0	G	A	consensus_score=250.7	frequency=1	major_base=A	major_cov=47/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/42
RA	4486	.	1	1371409	0	A	G	consensus_score=160.0	frequency=1	major_base=G	major_cov=30/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/29
RA	4487	.	1	1372778	0	G	A	consensus_score=195.0	frequency=1	major_base=A	major_cov=29/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/37
RA	4488	.	1	1373116	1	.	C	bias_e_value=567073	bias_p_value=0.267463	consensus_score=100.7	fisher_strand_p_value=0.106029	frequency=1	ks_quality_p_value=0.700784	major_base=C	major_cov=16/20	major_frequency=9.000e-01	minor_base=.	minor_cov=4/0	new_cov=16/20	polymorphism_frequency=9.000e-01	polymorphism_score=7.5	prediction=consensus	ref_cov=4/0	total_cov=20/20
RA	4489	.	1	1373116	2	.	C	bias_e_value=1452440	bias_p_value=0.685049	consensus_score=95.2	fisher_strand_p_value=0.341649	frequency=1	ks_quality_p_value=0.937737	major_base=C	major_cov=16/19	major_frequency=8.750e-01	minor_base=.	minor_cov=4/1	new_cov=16/19	polymorphism_frequency=8.750e-01	polymorphism_score=11.4	prediction=consensus	ref_cov=4/1	total_cov=20/20
RA	4490	.	1	1373340	0	C	T	bias_e_value=1534210	bias_p_value=0.723616	consensus_score=163.1	fisher_strand_p_value=0.355932	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=20/38	major_frequency=9.831e-01	minor_base=G	minor_cov=1/0	new_cov=20/38	polymorphism_frequency=9.831e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/38
RA	4491	.	1	1375789	0	G	T	bias_e_value=1483580	bias_p_value=0.699739	consensus_score=147.0	fisher_strand_p_value=0.339623	frequency=1	ks_quality_p_value=0.982021	major_base=T	major_cov=35/17	major_frequency=9.811e-01	minor_base=G	minor_cov=0/1	new_cov=35/17	polymorphism_frequency=9.811e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=0/1	total_cov=35/18
RA	4492	.	1	1376119	0	T	C	consensus_score=153.8	frequency=1	major_base=C	major_cov=32/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/26
RA	4493	.	1	1376703	0	A	G	bias_e_value=1782760	bias_p_value=0.840846	consensus_score=161.6	fisher_strand_p_value=0.491833	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=28/28	major_frequency=9.655e-01	minor_base=T	minor_cov=0/2	new_cov=28/28	polymorphism_frequency=9.655e-01	polymorphism_score=-6.4	prediction=consensus	ref_cov=0/0	total_cov=28/30
RA	4494	.	1	1378690	0	A	G	consensus_score=197.2	frequency=1	major_base=G	major_cov=30/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/37
RA	4495	.	1	1379936	0	T	C	consensus_score=60.4	frequency=1	major_base=C	major_cov=12/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/11
RA	4496	.	1	1381019	0	C	T	consensus_score=87.2	frequency=1	major_base=T	major_cov=17/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/15
RA	4497	.	1	1384904	0	C	T	consensus_score=277.7	frequency=1	major_base=T	major_cov=35/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/57
RA	4498	.	1	1388845	0	T	C	consensus_score=222.6	frequency=1	major_base=C	major_cov=36/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/42
RA	4499	.	1	1389153	0	A	G	bias_e_value=2108650	bias_p_value=0.994555	consensus_score=196.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.897472	major_base=G	major_cov=34/30	major_frequency=9.846e-01	minor_base=.	minor_cov=1/0	new_cov=34/30	polymorphism_frequency=9.846e-01	polymorphism_score=-2.9	prediction=consensus	ref_cov=0/0	total_cov=35/30
RA	4500	.	1	1390769	0	T	C	consensus_score=146.5	frequency=1	major_base=C	major_cov=21/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/31
RA	4501	.	1	1391939	0	A	C	consensus_score=163.0	frequency=1	major_base=C	major_cov=28/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/26
RA	4502	.	1	1392512	0	C	T	consensus_score=136.2	frequency=1	major_base=T	major_cov=21/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/28
RA	4503	.	1	1392721	0	G	A	consensus_score=148.6	frequency=1	major_base=A	major_cov=23/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/30
RA	4504	.	1	1392827	1	.	G	consensus_score=192.4	frequency=1	major_base=G	major_cov=30/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/39
RA	4505	.	1	1393724	0	T	C	consensus_score=166.0	frequency=1	major_base=C	major_cov=32/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/27
RA	4506	.	1	1394030	0	A	C	consensus_score=184.3	frequency=1	major_base=C	major_cov=36/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/29
RA	4507	.	1	1395178	0	C	A	bias_e_value=2120200	bias_p_value=1	consensus_score=152.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=27/28	major_frequency=9.821e-01	minor_base=G	minor_cov=0/1	new_cov=27/28	polymorphism_frequency=9.821e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/29
RA	4508	.	1	1395937	0	T	C	consensus_score=176.9	frequency=1	major_base=C	major_cov=26/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/36
RA	4509	.	1	1397387	0	T	C	consensus_score=204.3	frequency=1	major_base=C	major_cov=38/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/30
RA	4510	.	1	1399047	0	C	G	bias_e_value=1714570	bias_p_value=0.808684	consensus_reject=FREQUENCY_CUTOFF	consensus_score=27.7	fisher_strand_p_value=0.682838	frequency=3.077e-01	ks_quality_p_value=0.657834	major_base=C	major_cov=9/9	major_frequency=6.923e-01	minor_base=G	minor_cov=3/5	new_cov=3/5	polymorphism_frequency=3.077e-01	polymorphism_score=19.9	prediction=polymorphism	ref_cov=9/9	total_cov=12/14
RA	4511	.	1	1399050	0	T	A	bias_e_value=762931	bias_p_value=0.35984	consensus_reject=FREQUENCY_CUTOFF	consensus_score=33.6	fisher_strand_p_value=0.682838	frequency=3.077e-01	ks_quality_p_value=0.165794	major_base=T	major_cov=9/9	major_frequency=6.923e-01	minor_base=A	minor_cov=3/5	new_cov=3/5	polymorphism_frequency=3.077e-01	polymorphism_score=21.3	prediction=polymorphism	ref_cov=9/9	total_cov=12/14
RA	4512	.	1	1403094	1	.	A	consensus_score=55.9	frequency=1	major_base=A	major_cov=8/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/13
RA	4513	.	1	1403210	0	C	T	consensus_score=66.2	frequency=1	major_base=T	major_cov=11/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/14
RA	4514	.	1	1403588	0	A	C	consensus_score=87.6	frequency=1	major_base=C	major_cov=20/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/10
RA	4515	.	1	1403713	0	T	C	consensus_score=149.3	frequency=1	major_base=C	major_cov=34/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/17
RA	4516	.	1	1403791	0	G	A	consensus_score=170.3	frequency=1	major_base=A	major_cov=38/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/24
RA	4517	.	1	1404403	0	T	C	consensus_score=200.4	frequency=1	major_base=C	major_cov=39/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/28
RA	4518	.	1	1406481	0	A	G	consensus_score=151.7	frequency=1	major_base=G	major_cov=25/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/26
RA	4519	.	1	1406545	0	G	C	consensus_score=130.0	frequency=1	major_base=C	major_cov=25/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/19
RA	4520	.	1	1406721	0	C	T	consensus_score=182.6	frequency=1	major_base=T	major_cov=30/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/35
RA	4521	.	1	1406822	0	A	G	consensus_score=203.9	frequency=1	major_base=G	major_cov=26/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/45
RA	4522	.	1	1407109	0	C	A	consensus_score=222.6	frequency=1	major_base=A	major_cov=43/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/36
RA	4523	.	1	1414007	0	C	T	consensus_score=216.2	frequency=1	major_base=T	major_cov=37/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/38
RA	4524	.	1	1414059	0	G	A	consensus_score=216.7	frequency=1	major_base=A	major_cov=40/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/37
RA	4525	.	1	1417312	0	T	C	consensus_score=212.5	frequency=1	major_base=C	major_cov=35/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/35
RA	4526	.	1	1418532	0	A	G	consensus_score=218.7	frequency=1	major_base=G	major_cov=38/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/38
RA	4527	.	1	1418936	0	A	C	consensus_score=163.9	frequency=1	major_base=C	major_cov=28/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/29
RA	4528	.	1	1421630	0	A	G	consensus_score=14.6	deleted=1	frequency=1	major_base=G	major_cov=3/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/4
RA	4529	.	1	1422404	0	G	A	consensus_score=109.7	frequency=1	major_base=A	major_cov=24/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/16
RA	4530	.	1	1423081	0	C	T	consensus_score=155.3	frequency=1	major_base=T	major_cov=38/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/16
RA	4531	.	1	1423200	0	A	C	consensus_score=186.8	frequency=1	major_base=C	major_cov=49/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/22
RA	4532	.	1	1423615	0	C	A	bias_e_value=663663	bias_p_value=0.31302	consensus_reject=FREQUENCY_CUTOFF	consensus_score=150.3	fisher_strand_p_value=0.0954867	frequency=2.237e-01	ks_quality_p_value=0.970125	major_base=C	major_cov=36/23	major_frequency=7.763e-01	minor_base=A	minor_cov=6/11	new_cov=6/11	polymorphism_frequency=2.237e-01	polymorphism_score=37.9	prediction=polymorphism	ref_cov=36/23	total_cov=42/34
RA	4533	.	1	1424400	0	A	G	consensus_score=179.8	frequency=1	major_base=G	major_cov=42/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/26
RA	4534	.	1	1424953	0	A	G	consensus_score=181.4	frequency=1	major_base=G	major_cov=35/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/29
RA	4535	.	1	1428755	0	G	T	consensus_score=191.6	frequency=1	major_base=T	major_cov=28/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/44
RA	4536	.	1	1429180	0	A	G	consensus_score=201.5	frequency=1	major_base=G	major_cov=28/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/39
RA	4537	.	1	1430015	0	G	T	bias_e_value=4033.86	bias_p_value=0.00190259	consensus_reject=FREQUENCY_CUTOFF	consensus_score=39.8	fisher_strand_p_value=0.0001999	frequency=3.333e-01	ks_quality_p_value=1	major_base=G	major_cov=15/5	major_frequency=6.667e-01	minor_base=T	minor_cov=0/10	new_cov=0/10	polymorphism_frequency=3.333e-01	polymorphism_score=10.3	prediction=polymorphism	ref_cov=15/5	total_cov=15/15
RA	4538	.	1	1430083	0	C	A	bias_e_value=0.170473	bias_p_value=8.04043e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=32.0	fisher_strand_p_value=3.95122e-09	frequency=3.889e-01	ks_quality_p_value=1	major_base=C	major_cov=21/1	major_frequency=6.111e-01	minor_base=A	minor_cov=0/14	new_cov=0/14	polymorphism_frequency=3.889e-01	polymorphism_score=24.0	prediction=polymorphism	ref_cov=21/1	total_cov=21/15
RA	4539	.	1	1431000	0	T	C	bias_e_value=877325	bias_p_value=0.413795	consensus_score=193.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.139258	major_base=C	major_cov=25/44	major_frequency=9.857e-01	minor_base=T	minor_cov=0/1	new_cov=25/44	polymorphism_frequency=9.857e-01	polymorphism_score=-5.2	prediction=consensus	ref_cov=0/1	total_cov=25/45
RA	4540	.	1	1431369	0	T	C	consensus_score=234.0	frequency=1	major_base=C	major_cov=44/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/33
RA	4541	.	1	1435445	0	T	G	consensus_score=186.3	frequency=1	major_base=G	major_cov=38/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/27
RA	4542	.	1	1435480	0	G	T	consensus_score=207.2	frequency=1	major_base=T	major_cov=40/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/31
RA	4543	.	1	1435530	0	G	T	consensus_score=204.7	frequency=1	major_base=T	major_cov=36/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/33
RA	4544	.	1	1435913	0	A	C	consensus_score=217.0	frequency=1	major_base=C	major_cov=34/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/38
RA	4545	.	1	1435942	0	T	C	consensus_score=186.4	frequency=1	major_base=C	major_cov=27/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/38
RA	4546	.	1	1436106	0	G	A	consensus_score=203.2	frequency=1	major_base=A	major_cov=38/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/34
RA	4547	.	1	1436655	0	C	A	consensus_score=173.4	frequency=1	major_base=A	major_cov=37/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/24
RA	4548	.	1	1438319	0	C	G	consensus_score=213.2	frequency=1	major_base=G	major_cov=31/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/39
RA	4549	.	1	1438352	0	C	T	consensus_score=217.4	frequency=1	major_base=T	major_cov=33/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/44
RA	4550	.	1	1440560	0	G	A	consensus_score=89.6	frequency=1	major_base=A	major_cov=16/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/18
RA	4551	.	1	1441872	0	C	T	consensus_score=149.7	frequency=1	major_base=T	major_cov=28/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/26
RA	4552	.	1	1442309	0	G	A	consensus_score=159.1	frequency=1	major_base=A	major_cov=35/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/22
RA	4553	.	1	1442646	0	G	A	consensus_score=222.9	frequency=1	major_base=A	major_cov=40/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/38
RA	4554	.	1	1442716	0	A	C	consensus_score=199.8	frequency=1	major_base=C	major_cov=36/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/31
RA	4555	.	1	1446705	0	T	G	consensus_score=180.4	frequency=1	major_base=G	major_cov=25/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/35
RA	4556	.	1	1447483	0	A	G	consensus_score=153.0	frequency=1	major_base=G	major_cov=31/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/20
RA	4557	.	1	1448626	0	C	T	consensus_score=204.7	frequency=1	major_base=T	major_cov=39/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/33
RA	4558	.	1	1450759	0	G	.	consensus_score=201.9	frequency=1	major_base=.	major_cov=25/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/23
RA	4559	.	1	1450760	0	G	.	consensus_score=201.9	frequency=1	major_base=.	major_cov=25/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/23
RA	4560	.	1	1453421	0	T	C	consensus_score=217.2	frequency=1	major_base=C	major_cov=39/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/36
RA	4561	.	1	1453714	0	T	C	consensus_score=179.5	frequency=1	major_base=C	major_cov=22/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/41
RA	4562	.	1	1453770	0	G	A	consensus_score=188.7	frequency=1	major_base=A	major_cov=25/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/42
RA	4563	.	1	1455208	0	A	C	bias_e_value=1.90055e-07	bias_p_value=8.96401e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=21.8	fisher_strand_p_value=1.16216e-08	frequency=5.741e-01	ks_quality_p_value=2.23013e-07	major_base=C	major_cov=0/31	major_frequency=5.741e-01	minor_base=A	minor_cov=16/7	new_cov=0/31	polymorphism_frequency=5.741e-01	polymorphism_score=58.2	prediction=polymorphism	ref_cov=16/7	total_cov=16/38
RA	4564	.	1	1455229	0	G	A	bias_e_value=2704.35	bias_p_value=0.00127552	consensus_reject=FREQUENCY_CUTOFF	consensus_score=50.4	fisher_strand_p_value=0.000128022	frequency=3.148e-01	ks_quality_p_value=1	major_base=G	major_cov=19/18	major_frequency=6.852e-01	minor_base=A	minor_cov=0/17	new_cov=0/17	polymorphism_frequency=3.148e-01	polymorphism_score=12.7	prediction=polymorphism	ref_cov=19/18	total_cov=19/35
RA	4565	.	1	1456366	0	A	G	consensus_score=192.1	frequency=1	major_base=G	major_cov=33/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/34
RA	4566	.	1	1457178	0	C	T	bias_e_value=1768930	bias_p_value=0.834322	consensus_score=75.1	fisher_strand_p_value=0.482759	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=15/13	major_frequency=9.655e-01	minor_base=G	minor_cov=0/1	new_cov=15/13	polymorphism_frequency=9.655e-01	polymorphism_score=-5.9	prediction=consensus	ref_cov=0/0	total_cov=15/14
RA	4567	.	1	1458866	0	G	A	consensus_score=85.0	frequency=1	major_base=A	major_cov=15/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/17
RA	4568	.	1	1460490	0	A	T	bias_e_value=1027440	bias_p_value=0.484595	consensus_score=111.8	fisher_strand_p_value=0.232558	frequency=1	ks_quality_p_value=0.763837	major_base=T	major_cov=19/22	major_frequency=9.318e-01	minor_base=A	minor_cov=3/0	new_cov=19/22	polymorphism_frequency=9.318e-01	polymorphism_score=2.7	prediction=consensus	ref_cov=3/0	total_cov=22/22
RA	4569	.	1	1460494	0	T	C	bias_e_value=1094060	bias_p_value=0.516018	consensus_score=115.3	fisher_strand_p_value=0.220674	frequency=1	ks_quality_p_value=0.889882	major_base=C	major_cov=18/22	major_frequency=9.524e-01	minor_base=T	minor_cov=2/0	new_cov=18/22	polymorphism_frequency=9.524e-01	polymorphism_score=-2.9	prediction=consensus	ref_cov=2/0	total_cov=20/22
RA	4570	.	1	1460496	0	G	T	bias_e_value=1148100	bias_p_value=0.541507	consensus_score=110.1	fisher_strand_p_value=0.220674	frequency=1	ks_quality_p_value=0.962621	major_base=T	major_cov=18/22	major_frequency=9.524e-01	minor_base=G	minor_cov=2/0	new_cov=18/22	polymorphism_frequency=9.524e-01	polymorphism_score=-1.5	prediction=consensus	ref_cov=2/0	total_cov=20/22
RA	4571	.	1	1460502	0	A	T	bias_e_value=460929	bias_p_value=0.217399	consensus_score=107.3	fisher_strand_p_value=0.220674	frequency=1	ks_quality_p_value=0.253744	major_base=T	major_cov=18/22	major_frequency=9.524e-01	minor_base=A	minor_cov=2/0	new_cov=18/22	polymorphism_frequency=9.524e-01	polymorphism_score=-0.4	prediction=consensus	ref_cov=2/0	total_cov=20/22
RA	4572	.	1	1460508	0	C	T	bias_e_value=1436880	bias_p_value=0.677711	consensus_score=125.8	fisher_strand_p_value=0.489796	frequency=1	ks_quality_p_value=0.641057	major_base=T	major_cov=23/24	major_frequency=9.592e-01	minor_base=C	minor_cov=2/0	new_cov=23/24	polymorphism_frequency=9.592e-01	polymorphism_score=-2.7	prediction=consensus	ref_cov=2/0	total_cov=25/24
RA	4573	.	1	1460514	0	C	T	bias_e_value=1673040	bias_p_value=0.789099	consensus_score=122.3	fisher_strand_p_value=0.489796	frequency=1	ks_quality_p_value=0.868762	major_base=T	major_cov=23/24	major_frequency=9.592e-01	minor_base=C	minor_cov=2/0	new_cov=23/24	polymorphism_frequency=9.592e-01	polymorphism_score=-2.7	prediction=consensus	ref_cov=2/0	total_cov=25/24
RA	4574	.	1	1460517	0	G	A	bias_e_value=1517700	bias_p_value=0.715832	consensus_score=124.9	fisher_strand_p_value=0.489796	frequency=1	ks_quality_p_value=0.711468	major_base=A	major_cov=23/24	major_frequency=9.592e-01	minor_base=G	minor_cov=2/0	new_cov=23/24	polymorphism_frequency=9.592e-01	polymorphism_score=-2.4	prediction=consensus	ref_cov=2/0	total_cov=25/24
RA	4575	.	1	1460523	0	T	G	bias_e_value=1502500	bias_p_value=0.70866	consensus_score=141.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.341733	major_base=G	major_cov=25/25	major_frequency=9.804e-01	minor_base=T	minor_cov=1/0	new_cov=25/25	polymorphism_frequency=9.804e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=1/0	total_cov=26/25
RA	4576	.	1	1460529	0	C	T	consensus_score=139.3	frequency=1	major_base=T	major_cov=25/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/25
RA	4577	.	1	1460571	0	T	A	consensus_score=160.6	frequency=1	major_base=A	major_cov=26/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/29
RA	4578	.	1	1460591	0	G	A	consensus_score=171.4	frequency=1	major_base=A	major_cov=30/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/31
RA	4579	.	1	1460634	1	.	T	consensus_score=153.8	frequency=1	major_base=T	major_cov=25/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/30
RA	4580	.	1	1460639	0	C	G	consensus_score=155.6	frequency=1	major_base=G	major_cov=25/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/30
RA	4581	.	1	1460640	0	C	A	consensus_score=159.7	frequency=1	major_base=A	major_cov=25/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/30
RA	4582	.	1	1460643	0	T	A	consensus_score=150.6	frequency=1	major_base=A	major_cov=25/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/30
RA	4583	.	1	1460644	0	T	A	consensus_score=148.0	frequency=1	major_base=A	major_cov=25/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/30
RA	4584	.	1	1460646	1	.	T	bias_e_value=1198350	bias_p_value=0.565209	consensus_score=151.9	fisher_strand_p_value=0.454545	frequency=1	ks_quality_p_value=0.501796	major_base=T	major_cov=24/30	major_frequency=9.818e-01	minor_base=.	minor_cov=1/0	new_cov=24/30	polymorphism_frequency=9.818e-01	polymorphism_score=-3.2	prediction=consensus	ref_cov=1/0	total_cov=25/30
RA	4585	.	1	1460647	0	G	C	bias_e_value=1224490	bias_p_value=0.577535	consensus_score=136.2	fisher_strand_p_value=0.462963	frequency=1	ks_quality_p_value=0.510912	major_base=C	major_cov=24/29	major_frequency=9.815e-01	minor_base=T	minor_cov=1/0	new_cov=24/29	polymorphism_frequency=9.815e-01	polymorphism_score=-4.8	prediction=consensus	ref_cov=0/0	total_cov=25/30
RA	4586	.	1	1460648	0	G	A	bias_e_value=1590480	bias_p_value=0.750158	consensus_score=150.7	fisher_strand_p_value=0.454545	frequency=1	ks_quality_p_value=0.84165	major_base=A	major_cov=24/30	major_frequency=9.818e-01	minor_base=C	minor_cov=1/0	new_cov=24/30	polymorphism_frequency=9.818e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=0/0	total_cov=25/30
RA	4587	.	1	1460655	0	C	T	consensus_score=153.8	frequency=1	major_base=T	major_cov=25/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/32
RA	4588	.	1	1460683	0	A	C	consensus_score=164.4	frequency=1	major_base=C	major_cov=24/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/32
RA	4589	.	1	1460722	0	C	T	consensus_score=131.4	frequency=1	major_base=T	major_cov=22/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/25
RA	4590	.	1	1460723	0	G	A	bias_e_value=1781820	bias_p_value=0.840404	consensus_score=123.7	fisher_strand_p_value=0.491212	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=22/23	major_frequency=9.574e-01	minor_base=C	minor_cov=0/2	new_cov=22/23	polymorphism_frequency=9.574e-01	polymorphism_score=-5.3	prediction=consensus	ref_cov=0/0	total_cov=22/25
RA	4591	.	1	1460725	0	T	C	bias_e_value=2119970	bias_p_value=0.999892	consensus_score=124.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.985308	major_base=C	major_cov=22/24	major_frequency=9.787e-01	minor_base=A	minor_cov=0/1	new_cov=22/24	polymorphism_frequency=9.787e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/25
RA	4592	.	1	1460735	0	G	T	bias_e_value=2120200	bias_p_value=1	consensus_score=114.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=21/22	major_frequency=9.773e-01	minor_base=C	minor_cov=0/1	new_cov=21/22	polymorphism_frequency=9.773e-01	polymorphism_score=-6.0	prediction=consensus	ref_cov=0/0	total_cov=21/23
RA	4593	.	1	1460771	0	T	C	consensus_score=116.4	frequency=1	major_base=C	major_cov=16/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/24
RA	4594	.	1	1461547	0	C	T	consensus_score=68.9	frequency=1	major_base=T	major_cov=12/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/14
RA	4595	.	1	1461607	0	T	C	consensus_score=66.1	frequency=1	major_base=C	major_cov=12/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/11
RA	4596	.	1	1461621	0	T	C	consensus_score=66.4	frequency=1	major_base=C	major_cov=12/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/11
RA	4597	.	1	1461627	0	T	G	consensus_score=66.2	frequency=1	major_base=G	major_cov=12/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/11
RA	4598	.	1	1461636	0	T	G	consensus_score=66.2	frequency=1	major_base=G	major_cov=12/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/11
RA	4599	.	1	1461655	0	C	T	consensus_score=42.9	frequency=1	major_base=T	major_cov=8/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/9
RA	4600	.	1	1461661	0	A	T	consensus_score=42.6	frequency=1	major_base=T	major_cov=7/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/9
RA	4601	.	1	1461662	0	T	C	consensus_score=41.5	frequency=1	major_base=C	major_cov=7/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/9
RA	4602	.	1	1461668	0	T	C	consensus_score=37.7	frequency=1	major_base=C	major_cov=7/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/9
RA	4603	.	1	1461672	0	C	T	consensus_score=40.3	frequency=1	major_base=T	major_cov=7/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/9
RA	4604	.	1	1461676	0	T	A	consensus_score=39.7	frequency=1	major_base=A	major_cov=7/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/9
RA	4605	.	1	1461679	0	T	G	consensus_score=42.0	frequency=1	major_base=G	major_cov=7/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/9
RA	4606	.	1	1461680	0	T	A	consensus_score=42.5	frequency=1	major_base=A	major_cov=7/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/9
RA	4607	.	1	1461681	0	T	A	consensus_score=41.7	frequency=1	major_base=A	major_cov=7/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/9
RA	4608	.	1	1461683	0	C	T	consensus_score=39.9	frequency=1	major_base=T	major_cov=7/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/9
RA	4609	.	1	1461690	0	T	A	consensus_score=56.7	frequency=1	major_base=A	major_cov=10/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/11
RA	4610	.	1	1461751	0	G	A	consensus_score=80.2	frequency=1	major_base=A	major_cov=14/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/16
RA	4611	.	1	1463085	0	C	T	consensus_score=192.4	frequency=1	major_base=T	major_cov=43/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/25
RA	4612	.	1	1466048	0	A	G	consensus_score=158.2	frequency=1	major_base=G	major_cov=30/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/23
RA	4613	.	1	1466907	0	A	G	consensus_score=143.9	frequency=1	major_base=G	major_cov=32/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/19
RA	4614	.	1	1467056	0	C	T	consensus_score=202.7	frequency=1	major_base=T	major_cov=36/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/36
RA	4615	.	1	1467175	0	T	A	bias_e_value=0.0430433	bias_p_value=2.03016e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=127.3	fisher_strand_p_value=9.31511e-10	frequency=3.333e-01	ks_quality_p_value=1	major_base=T	major_cov=12/34	major_frequency=6.667e-01	minor_base=A	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=3.333e-01	polymorphism_score=16.8	prediction=polymorphism	ref_cov=12/34	total_cov=35/34
RA	4616	.	1	1467548	0	T	G	bias_e_value=240301	bias_p_value=0.113339	consensus_score=144.5	fisher_strand_p_value=0.0245749	frequency=1	ks_quality_p_value=0.974709	major_base=G	major_cov=34/28	major_frequency=9.118e-01	minor_base=T	minor_cov=0/6	new_cov=34/28	polymorphism_frequency=9.118e-01	polymorphism_score=-3.7	prediction=consensus	ref_cov=0/6	total_cov=34/34
RA	4617	.	1	1468810	0	T	C	consensus_score=174.4	frequency=1	major_base=C	major_cov=18/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/40
RA	4618	.	1	1469423	0	C	A	bias_e_value=1206720	bias_p_value=0.569155	consensus_score=111.3	fisher_strand_p_value=0.230769	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=30/8	major_frequency=9.744e-01	minor_base=C	minor_cov=0/1	new_cov=30/8	polymorphism_frequency=9.744e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=30/9
RA	4619	.	1	1470340	0	G	T	consensus_score=254.8	frequency=1	major_base=T	major_cov=39/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/50
RA	4620	.	1	1471283	0	T	C	consensus_score=179.7	frequency=1	major_base=C	major_cov=28/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/36
RA	4621	.	1	1472067	0	T	C	consensus_score=238.3	frequency=1	major_base=C	major_cov=39/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/44
RA	4622	.	1	1474335	0	A	G	consensus_score=181.9	frequency=1	major_base=G	major_cov=27/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/36
RA	4623	.	1	1475279	0	G	A	consensus_score=261.6	frequency=1	major_base=A	major_cov=46/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/46
RA	4624	.	1	1476242	0	C	T	bias_e_value=1764040	bias_p_value=0.832019	consensus_score=211.5	fisher_strand_p_value=0.481013	frequency=1	ks_quality_p_value=0.997083	major_base=T	major_cov=37/41	major_frequency=9.873e-01	minor_base=C	minor_cov=1/0	new_cov=37/41	polymorphism_frequency=9.873e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=38/41
RA	4625	.	1	1476316	0	G	A	consensus_score=190.9	frequency=1	major_base=A	major_cov=35/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/33
RA	4626	.	1	1476333	0	G	A	bias_e_value=1783260	bias_p_value=0.841081	consensus_score=193.9	fisher_strand_p_value=0.492958	frequency=1	ks_quality_p_value=0.998392	major_base=A	major_cov=34/36	major_frequency=9.859e-01	minor_base=G	minor_cov=1/0	new_cov=34/36	polymorphism_frequency=9.859e-01	polymorphism_score=-5.7	prediction=consensus	ref_cov=1/0	total_cov=35/36
RA	4627	.	1	1476863	0	A	C	consensus_score=236.2	frequency=1	major_base=C	major_cov=32/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/51
RA	4628	.	1	1479155	0	G	A	consensus_score=250.4	frequency=1	major_base=A	major_cov=40/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/45
RA	4629	.	1	1479308	0	A	G	consensus_score=261.0	frequency=1	major_base=G	major_cov=47/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/38
RA	4630	.	1	1480181	0	G	A	consensus_score=240.8	frequency=1	major_base=A	major_cov=41/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/43
RA	4631	.	1	1480244	0	C	G	consensus_score=241.8	frequency=1	major_base=G	major_cov=38/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/47
RA	4632	.	1	1480321	0	G	A	bias_e_value=2120200	bias_p_value=1	consensus_score=192.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=30/38	major_frequency=9.855e-01	minor_base=G	minor_cov=0/1	new_cov=30/38	polymorphism_frequency=9.855e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=30/39
RA	4633	.	1	1480883	0	T	C	consensus_score=260.7	frequency=1	major_base=C	major_cov=46/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/43
RA	4634	.	1	1482170	0	C	T	consensus_score=150.0	frequency=1	major_base=T	major_cov=8/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/47
RA	4635	.	1	1482317	0	C	T	bias_e_value=2120200	bias_p_value=1	consensus_score=203.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=33/42	major_frequency=9.868e-01	minor_base=C	minor_cov=0/1	new_cov=33/42	polymorphism_frequency=9.868e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=33/43
RA	4636	.	1	1483359	0	C	T	consensus_score=290.3	frequency=1	major_base=T	major_cov=45/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/52
RA	4637	.	1	1483476	0	C	T	consensus_score=295.8	frequency=1	major_base=T	major_cov=46/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/57
RA	4638	.	1	1486192	0	C	.	consensus_score=105.9	frequency=1	major_base=.	major_cov=12/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/14
RA	4639	.	1	1487008	0	G	A	consensus_score=238.2	frequency=1	major_base=A	major_cov=48/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/35
RA	4640	.	1	1487680	0	T	C	consensus_score=270.4	frequency=1	major_base=C	major_cov=33/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/61
RA	4641	.	1	1487905	0	A	G	consensus_score=177.5	frequency=1	major_base=G	major_cov=27/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/36
RA	4642	.	1	1488106	0	C	T	bias_e_value=92375.6	bias_p_value=0.0435694	consensus_score=177.0	fisher_strand_p_value=0.00737207	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=24/45	major_frequency=9.324e-01	minor_base=C	minor_cov=5/0	new_cov=24/45	polymorphism_frequency=9.324e-01	polymorphism_score=NA	prediction=consensus	ref_cov=5/0	total_cov=29/45
RA	4643	.	1	1490575	0	T	G	consensus_score=293.4	frequency=1	major_base=G	major_cov=48/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/51
RA	4644	.	1	1493070	0	A	C	consensus_score=221.1	frequency=1	major_base=C	major_cov=41/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/34
RA	4645	.	1	1494806	0	T	C	consensus_score=200.7	frequency=1	major_base=C	major_cov=33/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/33
RA	4646	.	1	1496524	0	G	A	consensus_score=260.1	frequency=1	major_base=A	major_cov=52/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/40
RA	4647	.	1	1496590	0	A	C	consensus_score=261.3	frequency=1	major_base=C	major_cov=47/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/41
RA	4648	.	1	1498293	0	C	T	consensus_score=193.0	frequency=1	major_base=T	major_cov=29/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/39
RA	4649	.	1	1498652	0	G	A	bias_e_value=1.27687	bias_p_value=6.02241e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=93.9	fisher_strand_p_value=3.39029e-08	frequency=2.836e-01	ks_quality_p_value=0.974665	major_base=G	major_cov=14/34	major_frequency=7.164e-01	minor_base=A	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.836e-01	polymorphism_score=13.3	prediction=polymorphism	ref_cov=14/34	total_cov=33/34
RA	4650	.	1	1498695	0	T	A	bias_e_value=96.8134	bias_p_value=4.56625e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=155.7	fisher_strand_p_value=3.35639e-06	frequency=2.338e-01	ks_quality_p_value=1	major_base=T	major_cov=24/35	major_frequency=7.662e-01	minor_base=A	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.338e-01	polymorphism_score=10.2	prediction=polymorphism	ref_cov=24/35	total_cov=42/35
RA	4651	.	1	1499142	0	A	G	consensus_score=233.1	frequency=1	major_base=G	major_cov=29/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/52
RA	4652	.	1	1499748	0	C	T	consensus_score=233.9	frequency=1	major_base=T	major_cov=36/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/46
RA	4653	.	1	1499882	0	G	T	bias_e_value=0.000298336	bias_p_value=1.40712e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=159.8	fisher_strand_p_value=5.64324e-12	frequency=2.759e-01	ks_quality_p_value=0.924208	major_base=G	major_cov=14/49	major_frequency=7.241e-01	minor_base=T	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.759e-01	polymorphism_score=16.6	prediction=polymorphism	ref_cov=14/49	total_cov=40/49
RA	4654	.	1	1499902	0	G	C	bias_e_value=2.46596e-05	bias_p_value=1.16308e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=159.5	fisher_strand_p_value=3.93413e-13	frequency=2.921e-01	ks_quality_p_value=1	major_base=G	major_cov=13/50	major_frequency=7.079e-01	minor_base=C	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=2.921e-01	polymorphism_score=25.4	prediction=polymorphism	ref_cov=13/50	total_cov=39/50
RA	4655	.	1	1499948	0	G	C	bias_e_value=0.594554	bias_p_value=2.80424e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=190.5	fisher_strand_p_value=1.47335e-08	frequency=2.159e-01	ks_quality_p_value=1	major_base=G	major_cov=21/48	major_frequency=7.841e-01	minor_base=C	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.159e-01	polymorphism_score=11.8	prediction=polymorphism	ref_cov=21/48	total_cov=40/48
RA	4656	.	1	1501223	0	T	C	bias_e_value=1491040	bias_p_value=0.703257	consensus_score=286.8	fisher_strand_p_value=0.336735	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=65/32	major_frequency=9.898e-01	minor_base=A	minor_cov=0/1	new_cov=65/32	polymorphism_frequency=9.898e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/33
RA	4657	.	1	1501999	0	G	T	consensus_score=302.3	frequency=1	major_base=T	major_cov=49/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/56
RA	4658	.	1	1502204	0	G	A	consensus_score=357.6	frequency=1	major_base=A	major_cov=60/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/64
RA	4659	.	1	1503901	0	C	A	consensus_score=256.4	frequency=1	major_base=A	major_cov=39/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/48
RA	4660	.	1	1504561	0	C	A	bias_e_value=744962	bias_p_value=0.351365	consensus_score=252.0	fisher_strand_p_value=0.109351	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=48/42	major_frequency=9.677e-01	minor_base=C	minor_cov=0/3	new_cov=48/42	polymorphism_frequency=9.677e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/3	total_cov=48/45
RA	4661	.	1	1504952	0	G	A	consensus_score=176.5	frequency=1	major_base=A	major_cov=23/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/38
RA	4662	.	1	1505836	0	C	T	bias_e_value=1773470	bias_p_value=0.836465	consensus_score=311.5	fisher_strand_p_value=0.485714	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=54/50	major_frequency=9.905e-01	minor_base=A	minor_cov=0/1	new_cov=54/50	polymorphism_frequency=9.905e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/51
RA	4663	.	1	1506848	1	.	T	consensus_score=205.9	frequency=1	major_base=T	major_cov=45/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/27
RA	4664	.	1	1507799	1	.	C	bias_e_value=2120200	bias_p_value=1	consensus_score=215.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=50/24	major_frequency=9.867e-01	minor_base=T	minor_cov=1/0	new_cov=50/24	polymorphism_frequency=9.867e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=52/24
RA	4665	.	1	1509495	0	C	T	consensus_score=231.0	frequency=1	major_base=T	major_cov=35/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/46
RA	4666	.	1	1510134	0	A	C	consensus_score=429.3	frequency=1	major_base=C	major_cov=60/88	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/88	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/88
RA	4667	.	1	1510631	0	A	G	bias_e_value=1381730	bias_p_value=0.651698	consensus_score=247.0	fisher_strand_p_value=0.442105	frequency=1	ks_quality_p_value=0.660928	major_base=G	major_cov=41/53	major_frequency=9.895e-01	minor_base=T	minor_cov=1/0	new_cov=41/53	polymorphism_frequency=9.895e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=0/0	total_cov=42/54
RA	4668	.	1	1510895	0	C	T	consensus_score=260.2	frequency=1	major_base=T	major_cov=42/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/50
RA	4669	.	1	1511138	0	C	A	consensus_score=342.9	frequency=1	major_base=A	major_cov=47/69	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/69	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/69
RA	4670	.	1	1512662	0	G	C	consensus_score=312.9	frequency=1	major_base=C	major_cov=51/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/54
RA	4671	.	1	1513975	0	C	T	consensus_score=233.8	frequency=1	major_base=T	major_cov=34/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/50
RA	4672	.	1	1514477	0	G	A	consensus_score=329.8	frequency=1	major_base=A	major_cov=54/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/61
RA	4673	.	1	1514516	0	A	G	consensus_score=333.7	frequency=1	major_base=G	major_cov=56/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/52
RA	4674	.	1	1514657	0	C	T	consensus_score=268.5	frequency=1	major_base=T	major_cov=59/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/33
RA	4675	.	1	1515772	0	T	.	consensus_score=510.5	frequency=1	major_base=.	major_cov=58/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/61
RA	4676	.	1	1515804	0	T	C	bias_e_value=1525690	bias_p_value=0.7196	consensus_score=326.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.352066	major_base=C	major_cov=52/61	major_frequency=9.912e-01	minor_base=T	minor_cov=0/1	new_cov=52/61	polymorphism_frequency=9.912e-01	polymorphism_score=-5.5	prediction=consensus	ref_cov=0/1	total_cov=52/62
RA	4677	.	1	1516424	0	A	C	bias_e_value=18734.1	bias_p_value=0.00883603	consensus_reject=FREQUENCY_CUTOFF	consensus_score=143.6	fisher_strand_p_value=0.00113566	frequency=3.333e-01	ks_quality_p_value=1	major_base=A	major_cov=29/31	major_frequency=6.667e-01	minor_base=C	minor_cov=4/26	new_cov=4/26	polymorphism_frequency=3.333e-01	polymorphism_score=14.1	prediction=polymorphism	ref_cov=29/31	total_cov=34/57
RA	4678	.	1	1516750	0	A	G	consensus_score=286.8	frequency=1	major_base=G	major_cov=44/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/54
RA	4679	.	1	1518092	0	C	T	consensus_score=209.1	frequency=1	major_base=T	major_cov=38/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/36
RA	4680	.	1	1519627	0	T	C	consensus_score=238.6	frequency=1	major_base=C	major_cov=37/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/46
RA	4681	.	1	1519786	0	T	C	consensus_score=316.2	frequency=1	major_base=C	major_cov=49/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/55
RA	4682	.	1	1520256	0	A	G	consensus_score=226.6	frequency=1	major_base=G	major_cov=42/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/37
RA	4683	.	1	1522242	0	T	C	consensus_score=245.8	frequency=1	major_base=C	major_cov=39/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/46
RA	4684	.	1	1523341	0	A	G	consensus_score=156.9	frequency=1	major_base=G	major_cov=23/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/31
RA	4685	.	1	1523951	0	T	C	consensus_score=309.4	frequency=1	major_base=C	major_cov=59/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/46
RA	4686	.	1	1525964	0	A	G	bias_e_value=778162	bias_p_value=0.367024	consensus_score=255.5	fisher_strand_p_value=0.116621	frequency=1	ks_quality_p_value=0.999216	major_base=G	major_cov=45/41	major_frequency=9.663e-01	minor_base=A	minor_cov=0/3	new_cov=45/41	polymorphism_frequency=9.663e-01	polymorphism_score=-6.1	prediction=consensus	ref_cov=0/3	total_cov=45/44
RA	4687	.	1	1526603	0	A	G	consensus_score=134.5	frequency=1	major_base=G	major_cov=39/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/9
RA	4688	.	1	1528208	0	A	C	consensus_score=218.5	frequency=1	major_base=C	major_cov=27/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/49
RA	4689	.	1	1528373	1	.	T	bias_e_value=1619430	bias_p_value=0.76381	consensus_score=186.9	fisher_strand_p_value=0.397059	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=41/26	major_frequency=9.853e-01	minor_base=G	minor_cov=0/1	new_cov=41/26	polymorphism_frequency=9.853e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/28
RA	4690	.	1	1528492	0	T	C	consensus_score=265.2	frequency=1	major_base=C	major_cov=60/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/33
RA	4691	.	1	1529128	0	C	T	consensus_score=163.3	frequency=1	major_base=T	major_cov=16/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/39
RA	4692	.	1	1529762	0	G	A	consensus_score=137.1	frequency=1	major_base=A	major_cov=18/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/29
RA	4693	.	1	1529838	1	.	A	consensus_score=65.1	frequency=1	major_base=A	major_cov=13/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/11
RA	4694	.	1	1529854	0	C	T	consensus_score=65.0	frequency=1	major_base=T	major_cov=13/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/11
RA	4695	.	1	1531985	0	A	G	bias_e_value=489019	bias_p_value=0.230648	consensus_score=196.9	fisher_strand_p_value=0.0607526	frequency=1	ks_quality_p_value=0.998417	major_base=G	major_cov=40/37	major_frequency=9.390e-01	minor_base=C	minor_cov=5/0	new_cov=40/37	polymorphism_frequency=9.390e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=0/0	total_cov=45/37
RA	4696	.	1	1532640	0	C	T	consensus_score=187.5	frequency=1	major_base=T	major_cov=37/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/29
RA	4697	.	1	1534237	0	T	C	consensus_score=202.3	frequency=1	major_base=C	major_cov=35/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/32
RA	4698	.	1	1534407	0	C	T	consensus_score=173.1	frequency=1	major_base=T	major_cov=28/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/33
RA	4699	.	1	1534494	0	C	T	consensus_score=188.2	frequency=1	major_base=T	major_cov=31/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/33
RA	4700	.	1	1536229	0	C	T	consensus_score=184.7	frequency=1	major_base=T	major_cov=24/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/44
RA	4701	.	1	1536556	0	A	C	bias_e_value=1785750	bias_p_value=0.842257	consensus_score=228.8	fisher_strand_p_value=0.493827	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=39/41	major_frequency=9.877e-01	minor_base=T	minor_cov=1/0	new_cov=39/41	polymorphism_frequency=9.877e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/41
RA	4702	.	1	1539051	0	A	G	bias_e_value=0.0176516	bias_p_value=8.32548e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=113.9	fisher_strand_p_value=3.66317e-10	frequency=7.049e-01	ks_quality_p_value=1	major_base=G	major_cov=36/7	major_frequency=7.049e-01	minor_base=T	minor_cov=0/18	new_cov=36/7	polymorphism_frequency=7.049e-01	polymorphism_score=14.4	prediction=polymorphism	ref_cov=0/0	total_cov=36/27
RA	4703	.	1	1539057	0	C	A	bias_e_value=0.0344006	bias_p_value=1.62252e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=101.8	fisher_strand_p_value=7.47542e-10	frequency=3.115e-01	ks_quality_p_value=0.985277	major_base=C	major_cov=34/8	major_frequency=6.885e-01	minor_base=A	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=3.115e-01	polymorphism_score=14.3	prediction=polymorphism	ref_cov=34/8	total_cov=34/27
RA	4704	.	1	1541436	0	T	G	consensus_score=171.2	frequency=1	major_base=G	major_cov=24/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/33
RA	4705	.	1	1541815	0	T	C	consensus_score=200.1	frequency=1	major_base=C	major_cov=27/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/43
RA	4706	.	1	1541821	0	C	T	consensus_score=211.9	frequency=1	major_base=T	major_cov=27/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/44
RA	4707	.	1	1542333	0	A	G	consensus_score=183.6	frequency=1	major_base=G	major_cov=24/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/38
RA	4708	.	1	1542857	0	G	T	consensus_score=186.6	frequency=1	major_base=T	major_cov=29/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/37
RA	4709	.	1	1542945	0	C	T	bias_e_value=1659180	bias_p_value=0.782562	consensus_score=150.0	fisher_strand_p_value=0.433333	frequency=1	ks_quality_p_value=0.964488	major_base=T	major_cov=25/34	major_frequency=9.833e-01	minor_base=C	minor_cov=1/0	new_cov=25/34	polymorphism_frequency=9.833e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=26/34
RA	4710	.	1	1543592	0	C	A	consensus_score=188.3	frequency=1	major_base=A	major_cov=31/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/36
RA	4711	.	1	1545010	0	T	G	consensus_score=28.5	frequency=1	major_base=G	major_cov=10/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/2
RA	4712	.	1	1545302	0	C	T	consensus_score=198.7	frequency=1	major_base=T	major_cov=44/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/25
RA	4713	.	1	1545789	0	T	C	consensus_score=216.0	frequency=1	major_base=C	major_cov=35/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/40
RA	4714	.	1	1546915	0	G	A	bias_e_value=0.391413	bias_p_value=1.84612e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=123.2	fisher_strand_p_value=1.08472e-08	frequency=2.400e-01	ks_quality_p_value=0.873946	major_base=G	major_cov=15/42	major_frequency=7.600e-01	minor_base=A	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.400e-01	polymorphism_score=11.4	prediction=polymorphism	ref_cov=15/42	total_cov=33/42
RA	4715	.	1	1546930	0	G	A	bias_e_value=1738480	bias_p_value=0.819962	consensus_score=171.3	fisher_strand_p_value=0.463768	frequency=1	ks_quality_p_value=0.999574	major_base=A	major_cov=31/37	major_frequency=9.855e-01	minor_base=C	minor_cov=1/0	new_cov=31/37	polymorphism_frequency=9.855e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/37
RA	4716	.	1	1547685	0	A	G	bias_e_value=1585500	bias_p_value=0.747806	consensus_score=203.1	fisher_strand_p_value=0.380282	frequency=1	ks_quality_p_value=0.999598	major_base=G	major_cov=26/44	major_frequency=9.859e-01	minor_base=T	minor_cov=1/0	new_cov=26/44	polymorphism_frequency=9.859e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/44
RA	4717	.	1	1548402	0	A	G	consensus_score=265.5	frequency=1	major_base=G	major_cov=34/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/57
RA	4718	.	1	1551753	0	A	G	consensus_score=301.6	frequency=1	major_base=G	major_cov=52/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/47
RA	4719	.	1	1552290	0	C	T	consensus_score=146.4	frequency=1	major_base=T	major_cov=6/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/43
RA	4720	.	1	1552336	0	A	G	consensus_score=123.1	frequency=1	major_base=G	major_cov=1/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=1/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=1/42
RA	4721	.	1	1553037	0	C	T	consensus_score=269.0	frequency=1	major_base=T	major_cov=38/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/57
RA	4722	.	1	1555090	0	G	A	consensus_score=155.9	frequency=1	major_base=A	major_cov=29/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/27
RA	4723	.	1	1557721	0	G	A	consensus_score=233.2	frequency=1	major_base=A	major_cov=42/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/42
RA	4724	.	1	1558890	0	A	G	consensus_score=156.2	frequency=1	major_base=G	major_cov=27/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/29
RA	4725	.	1	1561107	0	G	A	consensus_score=162.4	frequency=1	major_base=A	major_cov=34/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/25
RA	4726	.	1	1561226	1	.	A	consensus_score=214.1	frequency=1	major_base=A	major_cov=43/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/32
RA	4727	.	1	1561389	0	T	C	consensus_score=193.2	frequency=1	major_base=C	major_cov=31/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/36
RA	4728	.	1	1565705	0	C	T	consensus_score=195.8	frequency=1	major_base=T	major_cov=34/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/33
RA	4729	.	1	1565790	0	A	G	consensus_score=181.7	frequency=1	major_base=G	major_cov=30/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/33
RA	4730	.	1	1567909	0	T	C	consensus_score=162.7	frequency=1	major_base=C	major_cov=29/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/28
RA	4731	.	1	1567917	0	A	G	consensus_score=172.5	frequency=1	major_base=G	major_cov=31/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/29
RA	4732	.	1	1568519	0	C	A	consensus_score=81.2	frequency=1	major_base=A	major_cov=23/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/7
RA	4733	.	1	1568920	0	C	T	consensus_score=100.6	frequency=1	major_base=T	major_cov=18/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/19
RA	4734	.	1	1569091	0	C	T	consensus_score=112.7	frequency=1	major_base=T	major_cov=12/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/29
RA	4735	.	1	1569293	0	T	C	consensus_score=255.4	frequency=1	major_base=C	major_cov=44/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/40
RA	4736	.	1	1569355	0	T	C	consensus_score=244.7	frequency=1	major_base=C	major_cov=41/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/38
RA	4737	.	1	1571143	0	C	T	consensus_score=243.4	frequency=1	major_base=T	major_cov=48/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/37
RA	4738	.	1	1574190	0	A	G	consensus_score=159.7	frequency=1	major_base=G	major_cov=32/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/21
RA	4739	.	1	1574406	0	G	A	consensus_score=222.4	frequency=1	major_base=A	major_cov=34/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/45
RA	4740	.	1	1575057	0	G	A	consensus_score=202.7	frequency=1	major_base=A	major_cov=42/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/29
RA	4741	.	1	1576278	0	G	A	consensus_score=88.6	frequency=1	major_base=A	major_cov=13/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/19
RA	4742	.	1	1577268	0	T	C	consensus_score=133.5	frequency=1	major_base=C	major_cov=21/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/27
RA	4743	.	1	1577476	0	C	T	consensus_score=223.9	frequency=1	major_base=T	major_cov=30/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/49
RA	4744	.	1	1578230	0	G	T	consensus_score=157.5	frequency=1	major_base=T	major_cov=27/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/27
RA	4745	.	1	1578444	0	G	T	consensus_score=40.5	frequency=1	major_base=T	major_cov=6/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/10
RA	4746	.	1	1579250	0	A	G	consensus_score=201.2	frequency=1	major_base=G	major_cov=32/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/36
RA	4747	.	1	1580321	0	G	A	consensus_score=265.6	frequency=1	major_base=A	major_cov=42/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/49
RA	4748	.	1	1580477	0	A	G	consensus_score=46.7	frequency=1	major_base=G	major_cov=14/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/11
RA	4749	.	1	1580534	0	T	G	consensus_score=95.3	frequency=1	major_base=G	major_cov=28/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/19
RA	4750	.	1	1586142	0	T	C	bias_e_value=483240	bias_p_value=0.227922	consensus_reject=FREQUENCY_CUTOFF	consensus_score=28.3	fisher_strand_p_value=0.0596867	frequency=6.765e-01	ks_quality_p_value=1	major_base=C	major_cov=17/6	major_frequency=6.765e-01	minor_base=T	minor_cov=4/7	new_cov=17/6	polymorphism_frequency=6.765e-01	polymorphism_score=18.6	prediction=polymorphism	ref_cov=4/7	total_cov=21/13
RA	4751	.	1	1587049	0	T	C	consensus_score=225.3	frequency=1	major_base=C	major_cov=38/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/37
RA	4752	.	1	1588297	0	C	G	consensus_score=205.4	frequency=1	major_base=G	major_cov=36/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/36
RA	4753	.	1	1589402	0	T	C	consensus_score=183.4	frequency=1	major_base=C	major_cov=27/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/37
RA	4754	.	1	1590353	0	A	G	consensus_score=211.2	frequency=1	major_base=G	major_cov=40/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/34
RA	4755	.	1	1590433	0	T	G	consensus_score=236.1	frequency=1	major_base=G	major_cov=39/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/42
RA	4756	.	1	1591045	0	T	C	consensus_score=224.0	frequency=1	major_base=C	major_cov=48/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/28
RA	4757	.	1	1591079	0	C	T	consensus_score=216.4	frequency=1	major_base=T	major_cov=46/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/28
RA	4758	.	1	1594371	0	G	T	consensus_score=233.2	frequency=1	major_base=T	major_cov=37/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/44
RA	4759	.	1	1594736	0	T	G	consensus_score=205.6	frequency=1	major_base=G	major_cov=45/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/28
RA	4760	.	1	1595284	0	G	A	consensus_score=188.5	frequency=1	major_base=A	major_cov=29/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/37
RA	4761	.	1	1596308	0	G	T	consensus_score=205.5	frequency=1	major_base=T	major_cov=41/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/31
RA	4762	.	1	1597222	0	G	A	consensus_score=240.4	frequency=1	major_base=A	major_cov=52/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/35
RA	4763	.	1	1599230	0	A	C	consensus_score=181.3	frequency=1	major_base=C	major_cov=27/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/36
RA	4764	.	1	1602084	0	C	G	consensus_score=223.6	frequency=1	major_base=G	major_cov=37/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/37
RA	4765	.	1	1605778	0	T	C	consensus_score=267.4	frequency=1	major_base=C	major_cov=44/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/48
RA	4766	.	1	1606104	0	C	T	consensus_score=58.0	frequency=1	major_base=T	major_cov=8/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/14
RA	4767	.	1	1608823	0	A	C	consensus_score=168.2	frequency=1	major_base=C	major_cov=31/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/25
RA	4768	.	1	1610096	0	T	C	consensus_score=100.8	frequency=1	major_base=C	major_cov=21/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/15
RA	4769	.	1	1610637	0	A	T	bias_e_value=804.682	bias_p_value=0.000379532	consensus_reject=FREQUENCY_CUTOFF	consensus_score=71.7	fisher_strand_p_value=3.35824e-05	frequency=3.182e-01	ks_quality_p_value=1	major_base=A	major_cov=20/10	major_frequency=6.818e-01	minor_base=T	minor_cov=0/14	new_cov=0/14	polymorphism_frequency=3.182e-01	polymorphism_score=13.4	prediction=polymorphism	ref_cov=20/10	total_cov=20/24
RA	4770	.	1	1610786	0	C	T	consensus_score=140.7	frequency=1	major_base=T	major_cov=22/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/29
RA	4771	.	1	1612351	0	G	A	consensus_score=157.2	frequency=1	major_base=A	major_cov=31/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/25
RA	4772	.	1	1612775	0	T	C	consensus_score=192.9	frequency=1	major_base=C	major_cov=31/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/36
RA	4773	.	1	1613753	0	C	A	consensus_score=172.1	frequency=1	major_base=A	major_cov=32/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/30
RA	4774	.	1	1613815	0	A	T	consensus_score=88.9	frequency=1	major_base=T	major_cov=17/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/16
RA	4775	.	1	1613817	0	A	G	consensus_score=95.1	frequency=1	major_base=G	major_cov=17/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/16
RA	4776	.	1	1613821	0	C	T	consensus_score=85.2	frequency=1	major_base=T	major_cov=17/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/16
RA	4777	.	1	1613868	0	A	G	consensus_score=63.4	frequency=1	major_base=G	major_cov=15/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/9
RA	4778	.	1	1613871	0	T	C	consensus_score=65.3	frequency=1	major_base=C	major_cov=15/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/9
RA	4779	.	1	1617679	0	T	G	consensus_score=189.1	frequency=1	major_base=G	major_cov=40/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/27
RA	4780	.	1	1617894	0	A	T	consensus_score=218.8	frequency=1	major_base=T	major_cov=40/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/36
RA	4781	.	1	1618173	0	T	C	consensus_score=173.5	frequency=1	major_base=C	major_cov=30/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/32
RA	4782	.	1	1619871	0	C	G	bias_e_value=1707550	bias_p_value=0.805376	consensus_reject=FREQUENCY_CUTOFF	consensus_score=122.3	fisher_strand_p_value=0.489012	frequency=3.214e-01	ks_quality_p_value=0.91017	major_base=C	major_cov=31/26	major_frequency=6.786e-01	minor_base=G	minor_cov=17/10	new_cov=17/10	polymorphism_frequency=3.214e-01	polymorphism_score=72.4	prediction=polymorphism	ref_cov=31/26	total_cov=48/36
RA	4783	.	1	1619946	0	C	T	bias_e_value=1622900	bias_p_value=0.76545	consensus_reject=FREQUENCY_CUTOFF	consensus_score=37.4	fisher_strand_p_value=0.699419	frequency=4.495e-01	ks_quality_p_value=0.570243	major_base=C	major_cov=31/29	major_frequency=5.505e-01	minor_base=T	minor_cov=28/21	new_cov=28/21	polymorphism_frequency=4.495e-01	polymorphism_score=100.1	prediction=polymorphism	ref_cov=31/29	total_cov=59/50
RA	4784	.	1	1619949	0	A	G	bias_e_value=734240	bias_p_value=0.346308	consensus_reject=FREQUENCY_CUTOFF	consensus_score=25.3	fisher_strand_p_value=0.12705	frequency=4.815e-01	ks_quality_p_value=0.842786	major_base=A	major_cov=26/30	major_frequency=5.185e-01	minor_base=G	minor_cov=32/20	new_cov=32/20	polymorphism_frequency=4.815e-01	polymorphism_score=103.0	prediction=polymorphism	ref_cov=26/30	total_cov=58/50
RA	4785	.	1	1620003	0	A	G	bias_e_value=9506.44	bias_p_value=0.00448376	consensus_reject=FREQUENCY_CUTOFF	consensus_score=34.5	fisher_strand_p_value=0.703762	frequency=5.877e-01	ks_quality_p_value=0.000744843	major_base=G	major_cov=35/32	major_frequency=5.877e-01	minor_base=A	minor_cov=22/25	new_cov=35/32	polymorphism_frequency=5.877e-01	polymorphism_score=98.5	prediction=polymorphism	ref_cov=22/25	total_cov=58/58
RA	4786	.	1	1620050	0	T	C	bias_e_value=1578000	bias_p_value=0.744271	consensus_reject=FREQUENCY_CUTOFF	consensus_score=83.4	fisher_strand_p_value=0.836889	frequency=3.495e-01	ks_quality_p_value=0.44987	major_base=T	major_cov=34/33	major_frequency=6.505e-01	minor_base=C	minor_cov=17/19	new_cov=17/19	polymorphism_frequency=3.495e-01	polymorphism_score=63.6	prediction=polymorphism	ref_cov=34/33	total_cov=53/52
RA	4787	.	1	1620051	0	C	A	bias_e_value=774342	bias_p_value=0.365222	consensus_reject=FREQUENCY_CUTOFF	consensus_score=104.7	fisher_strand_p_value=0.30745	frequency=3.271e-01	ks_quality_p_value=0.3763	major_base=C	major_cov=39/33	major_frequency=6.729e-01	minor_base=A	minor_cov=15/20	new_cov=15/20	polymorphism_frequency=3.271e-01	polymorphism_score=80.1	prediction=polymorphism	ref_cov=39/33	total_cov=55/53
RA	4788	.	1	1620052	0	C	A	bias_e_value=250293	bias_p_value=0.118052	consensus_reject=FREQUENCY_CUTOFF	consensus_score=101.0	fisher_strand_p_value=0.215014	frequency=3.333e-01	ks_quality_p_value=0.117319	major_base=C	major_cov=38/32	major_frequency=6.667e-01	minor_base=A	minor_cov=14/21	new_cov=14/21	polymorphism_frequency=3.333e-01	polymorphism_score=76.5	prediction=polymorphism	ref_cov=38/32	total_cov=55/53
RA	4789	.	1	1620318	0	G	A	bias_e_value=1747480	bias_p_value=0.824207	consensus_score=228.1	fisher_strand_p_value=0.469136	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=43/37	major_frequency=9.877e-01	minor_base=C	minor_cov=0/1	new_cov=43/37	polymorphism_frequency=9.877e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/38
RA	4790	.	1	1620830	0	G	A	consensus_score=198.0	frequency=1	major_base=A	major_cov=30/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/40
RA	4791	.	1	1621288	0	G	A	consensus_score=280.2	frequency=1	major_base=A	major_cov=46/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/52
RA	4792	.	1	1621683	0	T	C	consensus_score=154.6	frequency=1	major_base=C	major_cov=23/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/29
RA	4793	.	1	1622930	0	A	G	consensus_score=188.2	frequency=1	major_base=G	major_cov=36/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/31
RA	4794	.	1	1623404	0	C	T	consensus_score=227.0	frequency=1	major_base=T	major_cov=36/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/44
RA	4795	.	1	1624033	0	G	C	bias_e_value=1617020	bias_p_value=0.762677	consensus_score=132.2	fisher_strand_p_value=0.395833	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=29/18	major_frequency=9.792e-01	minor_base=G	minor_cov=0/1	new_cov=29/18	polymorphism_frequency=9.792e-01	polymorphism_score=-6.2	prediction=consensus	ref_cov=0/1	total_cov=29/19
RA	4796	.	1	1625398	0	C	T	bias_e_value=0.00100457	bias_p_value=4.73808e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=77.9	fisher_strand_p_value=1.84237e-11	frequency=3.521e-01	ks_quality_p_value=1	major_base=C	major_cov=36/10	major_frequency=6.479e-01	minor_base=T	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=3.521e-01	polymorphism_score=20.9	prediction=polymorphism	ref_cov=36/10	total_cov=36/35
RA	4797	.	1	1625588	0	C	G	consensus_score=213.2	frequency=1	major_base=G	major_cov=31/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/39
RA	4798	.	1	1626788	0	A	G	consensus_score=184.8	frequency=1	major_base=G	major_cov=31/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/30
RA	4799	.	1	1627418	0	T	G	consensus_score=236.3	frequency=1	major_base=G	major_cov=40/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/42
RA	4800	.	1	1627811	0	T	C	bias_e_value=754366	bias_p_value=0.3558	consensus_score=231.6	fisher_strand_p_value=0.341463	frequency=1	ks_quality_p_value=0.326134	major_base=C	major_cov=27/54	major_frequency=9.878e-01	minor_base=T	minor_cov=1/0	new_cov=27/54	polymorphism_frequency=9.878e-01	polymorphism_score=-5.0	prediction=consensus	ref_cov=1/0	total_cov=28/54
RA	4801	.	1	1628158	0	C	T	consensus_score=202.5	frequency=1	major_base=T	major_cov=40/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/32
RA	4802	.	1	1632862	0	A	T	consensus_score=176.7	frequency=1	major_base=T	major_cov=22/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/41
RA	4803	.	1	1633873	0	A	T	bias_e_value=0.053752	bias_p_value=2.53524e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=100.8	fisher_strand_p_value=1.17583e-09	frequency=2.549e-01	ks_quality_p_value=1	major_base=A	major_cov=35/3	major_frequency=7.451e-01	minor_base=T	minor_cov=0/13	new_cov=0/13	polymorphism_frequency=2.549e-01	polymorphism_score=11.4	prediction=polymorphism	ref_cov=35/3	total_cov=35/16
RA	4804	.	1	1638189	0	G	T	consensus_score=173.8	frequency=1	major_base=T	major_cov=38/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/25
RA	4805	.	1	1638240	0	G	A	bias_e_value=2120200	bias_p_value=1	consensus_score=212.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=43/32	major_frequency=9.868e-01	minor_base=G	minor_cov=1/0	new_cov=43/32	polymorphism_frequency=9.868e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=44/32
RA	4806	.	1	1639975	0	T	G	consensus_score=177.4	frequency=1	major_base=G	major_cov=27/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/35
RA	4807	.	1	1642495	0	A	G	consensus_score=201.8	frequency=1	major_base=G	major_cov=23/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/47
RA	4808	.	1	1642747	0	T	G	consensus_score=162.3	frequency=1	major_base=G	major_cov=24/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/30
RA	4809	.	1	1644031	0	C	T	bias_e_value=2120190	bias_p_value=0.999998	consensus_score=257.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.997805	major_base=T	major_cov=39/51	major_frequency=9.890e-01	minor_base=C	minor_cov=0/1	new_cov=39/51	polymorphism_frequency=9.890e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=39/53
RA	4810	.	1	1644402	0	C	T	consensus_score=174.1	frequency=1	major_base=T	major_cov=29/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/34
RA	4811	.	1	1644490	0	A	C	bias_e_value=0.0474952	bias_p_value=2.24013e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=79.6	fisher_strand_p_value=1.03275e-09	frequency=4.328e-01	ks_quality_p_value=1	major_base=A	major_cov=26/12	major_frequency=5.672e-01	minor_base=C	minor_cov=0/29	new_cov=0/29	polymorphism_frequency=4.328e-01	polymorphism_score=14.8	prediction=polymorphism	ref_cov=26/12	total_cov=26/42
RA	4812	.	1	1646320	0	G	A	consensus_score=241.8	frequency=1	major_base=A	major_cov=45/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/42
RA	4813	.	1	1646591	0	T	G	consensus_score=128.3	frequency=1	major_base=G	major_cov=27/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/16
RA	4814	.	1	1647331	0	G	A	consensus_score=163.7	frequency=1	major_base=A	major_cov=27/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/31
RA	4815	.	1	1648808	0	A	C	consensus_score=256.3	frequency=1	major_base=C	major_cov=35/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/50
RA	4816	.	1	1653015	0	C	T	consensus_score=171.7	frequency=1	major_base=T	major_cov=29/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/29
RA	4817	.	1	1658140	0	G	A	consensus_score=258.3	frequency=1	major_base=A	major_cov=48/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/53
RA	4818	.	1	1659724	0	G	T	consensus_score=229.8	frequency=1	major_base=T	major_cov=46/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/35
RA	4819	.	1	1663734	0	G	A	consensus_score=293.9	frequency=1	major_base=A	major_cov=47/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/56
RA	4820	.	1	1663801	0	C	T	consensus_score=227.3	frequency=1	major_base=T	major_cov=34/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/45
RA	4821	.	1	1664670	0	C	T	consensus_score=266.3	frequency=1	major_base=T	major_cov=53/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/38
RA	4822	.	1	1665138	0	T	C	consensus_score=304.4	frequency=1	major_base=C	major_cov=51/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/55
RA	4823	.	1	1665179	0	G	A	consensus_score=273.6	frequency=1	major_base=A	major_cov=41/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/55
RA	4824	.	1	1665616	0	T	C	consensus_score=235.1	frequency=1	major_base=C	major_cov=44/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/39
RA	4825	.	1	1667666	1	.	T	bias_e_value=2120190	bias_p_value=0.999999	consensus_score=236.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998853	major_base=T	major_cov=42/41	major_frequency=9.881e-01	minor_base=.	minor_cov=1/0	new_cov=42/41	polymorphism_frequency=9.881e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=1/0	total_cov=43/41
RA	4826	.	1	1669506	0	C	T	consensus_score=336.0	frequency=1	major_base=T	major_cov=46/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/66
RA	4827	.	1	1669521	0	A	G	consensus_score=319.4	frequency=1	major_base=G	major_cov=42/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/66
RA	4828	.	1	1669896	0	T	C	consensus_score=297.4	frequency=1	major_base=C	major_cov=53/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/49
RA	4829	.	1	1671460	0	T	C	consensus_score=321.7	frequency=1	major_base=C	major_cov=51/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/57
RA	4830	.	1	1671682	0	C	T	bias_e_value=0.0146897	bias_p_value=6.92845e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=162.4	fisher_strand_p_value=3.02293e-10	frequency=2.500e-01	ks_quality_p_value=1	major_base=C	major_cov=22/50	major_frequency=7.500e-01	minor_base=T	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.500e-01	polymorphism_score=14.9	prediction=polymorphism	ref_cov=22/50	total_cov=46/50
RA	4831	.	1	1673896	0	A	G	consensus_score=345.3	frequency=1	major_base=G	major_cov=47/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/66
RA	4832	.	1	1677477	0	T	C	consensus_score=18.0	frequency=1	major_base=C	major_cov=4/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/4
RA	4833	.	1	1683478	0	T	C	consensus_score=110.0	frequency=1	major_base=C	major_cov=22/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/16
RA	4834	.	1	1684133	0	G	A	consensus_score=148.0	frequency=1	major_base=A	major_cov=31/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/22
RA	4835	.	1	1685051	0	A	G	consensus_score=225.8	frequency=1	major_base=G	major_cov=43/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/32
RA	4836	.	1	1685301	0	C	T	consensus_score=207.3	frequency=1	major_base=T	major_cov=36/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/37
RA	4837	.	1	1687525	0	T	C	consensus_score=241.3	frequency=1	major_base=C	major_cov=45/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/41
RA	4838	.	1	1687704	0	G	A	consensus_score=230.0	frequency=1	major_base=A	major_cov=38/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/43
RA	4839	.	1	1688866	0	G	A	consensus_score=234.7	frequency=1	major_base=A	major_cov=50/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/28
RA	4840	.	1	1690701	0	A	C	consensus_score=364.5	frequency=1	major_base=C	major_cov=56/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/63
RA	4841	.	1	1693773	0	G	A	consensus_score=223.6	frequency=1	major_base=A	major_cov=33/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/44
RA	4842	.	1	1697809	0	A	G	consensus_score=222.0	frequency=1	major_base=G	major_cov=43/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/34
RA	4843	.	1	1698685	0	C	T	consensus_score=296.2	frequency=1	major_base=T	major_cov=47/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/53
RA	4844	.	1	1699860	0	G	A	bias_e_value=1594640	bias_p_value=0.75212	consensus_score=125.6	fisher_strand_p_value=0.384615	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=32/19	major_frequency=9.808e-01	minor_base=G	minor_cov=0/1	new_cov=32/19	polymorphism_frequency=9.808e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=32/20
RA	4845	.	1	1700180	0	G	A	consensus_score=232.6	frequency=1	major_base=A	major_cov=38/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/44
RA	4846	.	1	1701809	0	G	A	consensus_score=199.4	frequency=1	major_base=A	major_cov=42/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/29
RA	4847	.	1	1702208	0	G	A	bias_e_value=0.00287767	bias_p_value=1.35727e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=134.1	fisher_strand_p_value=5.51255e-11	frequency=2.558e-01	ks_quality_p_value=1	major_base=G	major_cov=49/15	major_frequency=7.442e-01	minor_base=A	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.558e-01	polymorphism_score=11.2	prediction=polymorphism	ref_cov=49/15	total_cov=49/37
RA	4848	.	1	1702254	0	C	T	bias_e_value=0.519353	bias_p_value=2.44955e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=126.7	fisher_strand_p_value=1.27742e-08	frequency=2.250e-01	ks_quality_p_value=1	major_base=C	major_cov=45/17	major_frequency=7.750e-01	minor_base=T	minor_cov=0/18	new_cov=0/18	polymorphism_frequency=2.250e-01	polymorphism_score=13.2	prediction=polymorphism	ref_cov=45/17	total_cov=46/36
RA	4849	.	1	1702301	0	G	A	consensus_score=239.7	frequency=1	major_base=A	major_cov=46/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/39
RA	4850	.	1	1702955	0	C	T	consensus_score=138.0	frequency=1	major_base=T	major_cov=22/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/26
RA	4851	.	1	1703056	0	A	G	consensus_score=167.5	frequency=1	major_base=G	major_cov=25/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/33
RA	4852	.	1	1704601	0	T	C	consensus_score=36.1	frequency=1	major_base=C	major_cov=5/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/9
RA	4853	.	1	1707322	0	C	T	consensus_score=186.1	frequency=1	major_base=T	major_cov=36/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/30
RA	4854	.	1	1707861	0	C	T	bias_e_value=1830770	bias_p_value=0.863491	consensus_score=227.7	fisher_strand_p_value=0.525316	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=48/30	major_frequency=9.750e-01	minor_base=C	minor_cov=2/0	new_cov=48/30	polymorphism_frequency=9.750e-01	polymorphism_score=NA	prediction=consensus	ref_cov=2/0	total_cov=50/30
RA	4855	.	1	1709422	0	C	T	consensus_score=213.7	frequency=1	major_base=T	major_cov=36/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/41
RA	4856	.	1	1711757	0	A	G	consensus_score=302.4	frequency=1	major_base=G	major_cov=54/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/47
RA	4857	.	1	1713863	0	A	T	bias_e_value=0.000189085	bias_p_value=8.9183e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=151.1	fisher_strand_p_value=3.24859e-12	frequency=2.500e-01	ks_quality_p_value=1	major_base=A	major_cov=6/48	major_frequency=7.500e-01	minor_base=T	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.500e-01	polymorphism_score=13.6	prediction=polymorphism	ref_cov=6/48	total_cov=24/48
RA	4858	.	1	1713887	0	T	G	bias_e_value=0.0010173	bias_p_value=4.79812e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=149.5	fisher_strand_p_value=1.88534e-11	frequency=2.639e-01	ks_quality_p_value=0.990091	major_base=T	major_cov=8/45	major_frequency=7.361e-01	minor_base=G	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.639e-01	polymorphism_score=11.3	prediction=polymorphism	ref_cov=8/45	total_cov=29/45
RA	4859	.	1	1716271	0	A	G	consensus_score=182.7	frequency=1	major_base=G	major_cov=33/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/27
RA	4860	.	1	1718219	0	G	T	consensus_score=227.1	frequency=1	major_base=T	major_cov=50/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/30
RA	4861	.	1	1718579	0	C	T	consensus_score=294.0	frequency=1	major_base=T	major_cov=43/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/59
RA	4862	.	1	1718713	0	C	T	bias_e_value=1947400	bias_p_value=0.918498	consensus_score=238.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.62446	major_base=T	major_cov=34/50	major_frequency=9.882e-01	minor_base=.	minor_cov=0/1	new_cov=34/50	polymorphism_frequency=9.882e-01	polymorphism_score=-3.4	prediction=consensus	ref_cov=0/0	total_cov=34/51
RA	4863	.	1	1719365	0	C	T	consensus_score=187.8	frequency=1	major_base=T	major_cov=38/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/26
RA	4864	.	1	1722352	0	T	C	consensus_score=203.5	frequency=1	major_base=C	major_cov=34/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/38
RA	4865	.	1	1722985	0	T	G	bias_e_value=1772430	bias_p_value=0.835974	consensus_score=202.4	fisher_strand_p_value=0.493506	frequency=1	ks_quality_p_value=0.982833	major_base=G	major_cov=38/37	major_frequency=9.740e-01	minor_base=A	minor_cov=0/2	new_cov=38/37	polymorphism_frequency=9.740e-01	polymorphism_score=-5.3	prediction=consensus	ref_cov=0/2	total_cov=38/41
RA	4866	.	1	1723036	0	C	T	bias_e_value=11.0903	bias_p_value=5.23079e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=106.6	fisher_strand_p_value=3.31704e-07	frequency=2.821e-01	ks_quality_p_value=0.989977	major_base=C	major_cov=33/23	major_frequency=7.179e-01	minor_base=T	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.821e-01	polymorphism_score=17.8	prediction=polymorphism	ref_cov=33/23	total_cov=33/46
RA	4867	.	1	1723066	0	A	C	bias_e_value=2.53318e-05	bias_p_value=1.19479e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=61.5	fisher_strand_p_value=4.04518e-13	frequency=4.848e-01	ks_quality_p_value=1	major_base=A	major_cov=28/6	major_frequency=5.152e-01	minor_base=C	minor_cov=0/32	new_cov=0/32	polymorphism_frequency=4.848e-01	polymorphism_score=25.1	prediction=polymorphism	ref_cov=28/6	total_cov=28/38
RA	4868	.	1	1723981	0	A	G	consensus_score=272.0	frequency=1	major_base=G	major_cov=54/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/44
RA	4869	.	1	1724029	0	T	C	consensus_score=266.8	frequency=1	major_base=C	major_cov=51/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/40
RA	4870	.	1	1724447	0	T	C	bias_e_value=1523040	bias_p_value=0.718347	consensus_score=273.3	fisher_strand_p_value=0.450549	frequency=1	ks_quality_p_value=0.778753	major_base=C	major_cov=40/50	major_frequency=9.890e-01	minor_base=.	minor_cov=1/0	new_cov=40/50	polymorphism_frequency=9.890e-01	polymorphism_score=-3.2	prediction=consensus	ref_cov=0/0	total_cov=41/50
RA	4871	.	1	1725710	0	A	G	consensus_score=194.6	frequency=1	major_base=G	major_cov=32/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/33
RA	4872	.	1	1726342	0	T	G	consensus_score=292.2	frequency=1	major_base=G	major_cov=41/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/54
RA	4873	.	1	1727712	0	T	A	bias_e_value=0.00812766	bias_p_value=3.83345e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=102.2	fisher_strand_p_value=1.62861e-10	frequency=2.909e-01	ks_quality_p_value=1	major_base=T	major_cov=4/35	major_frequency=7.091e-01	minor_base=A	minor_cov=16/0	new_cov=16/0	polymorphism_frequency=2.909e-01	polymorphism_score=11.0	prediction=polymorphism	ref_cov=4/35	total_cov=20/35
RA	4874	.	1	1734216	0	G	A	consensus_score=218.6	frequency=1	major_base=A	major_cov=48/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/30
RA	4875	.	1	1739301	0	C	T	consensus_score=223.3	frequency=1	major_base=T	major_cov=38/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/39
RA	4876	.	1	1739340	0	G	A	consensus_score=207.5	frequency=1	major_base=A	major_cov=38/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/36
RA	4877	.	1	1741491	0	G	A	consensus_score=221.3	frequency=1	major_base=A	major_cov=43/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/36
RA	4878	.	1	1742937	0	G	A	consensus_score=231.1	frequency=1	major_base=A	major_cov=50/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/32
RA	4879	.	1	1745805	0	T	G	consensus_score=192.7	frequency=1	major_base=G	major_cov=36/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/31
RA	4880	.	1	1748003	0	A	G	consensus_score=178.2	frequency=1	major_base=G	major_cov=39/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/20
RA	4881	.	1	1748668	0	T	C	consensus_score=175.0	frequency=1	major_base=C	major_cov=29/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/28
RA	4882	.	1	1750099	0	G	A	consensus_score=217.8	frequency=1	major_base=A	major_cov=42/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/32
RA	4883	.	1	1750736	0	C	A	consensus_score=268.0	frequency=1	major_base=A	major_cov=39/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/54
RA	4884	.	1	1752607	0	C	T	consensus_score=272.8	frequency=1	major_base=T	major_cov=43/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/53
RA	4885	.	1	1757888	0	T	G	consensus_score=348.9	frequency=1	major_base=G	major_cov=60/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/56
RA	4886	.	1	1761226	0	A	G	consensus_score=304.6	frequency=1	major_base=G	major_cov=58/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/49
RA	4887	.	1	1762049	0	T	C	consensus_score=414.0	frequency=1	major_base=C	major_cov=55/80	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/80	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/80
RA	4888	.	1	1763289	0	A	C	consensus_score=172.4	frequency=1	major_base=C	major_cov=31/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/29
RA	4889	.	1	1763973	0	A	G	consensus_score=295.9	frequency=1	major_base=G	major_cov=49/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/52
RA	4890	.	1	1765465	0	G	A	consensus_score=274.1	frequency=1	major_base=A	major_cov=52/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/41
RA	4891	.	1	1766697	0	G	A	consensus_score=217.5	frequency=1	major_base=A	major_cov=47/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/38
RA	4892	.	1	1770382	0	C	T	consensus_score=93.4	frequency=1	major_base=T	major_cov=19/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/15
RA	4893	.	1	1771109	0	G	A	consensus_score=229.3	frequency=1	major_base=A	major_cov=35/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/45
RA	4894	.	1	1773418	0	T	G	consensus_score=200.0	frequency=1	major_base=G	major_cov=34/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/36
RA	4895	.	1	1773657	0	A	G	consensus_score=231.5	frequency=1	major_base=G	major_cov=38/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/39
RA	4896	.	1	1774706	0	G	A	consensus_score=282.1	frequency=1	major_base=A	major_cov=57/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/43
RA	4897	.	1	1774878	0	T	.	bias_e_value=2068300	bias_p_value=0.975525	consensus_reject=FREQUENCY_CUTOFF	consensus_score=165.8	fisher_strand_p_value=0.792974	frequency=7.722e-01	ks_quality_p_value=0.992557	major_base=.	major_cov=25/36	major_frequency=7.722e-01	minor_base=T	minor_cov=8/10	new_cov=25/36	polymorphism_frequency=7.722e-01	polymorphism_score=70.9	prediction=polymorphism	ref_cov=8/10	total_cov=33/46
RA	4898	.	1	1774879	0	T	.	bias_e_value=2065020	bias_p_value=0.973976	consensus_reject=FREQUENCY_CUTOFF	consensus_score=166.0	fisher_strand_p_value=0.792974	frequency=7.722e-01	ks_quality_p_value=0.984534	major_base=.	major_cov=25/36	major_frequency=7.722e-01	minor_base=T	minor_cov=8/10	new_cov=25/36	polymorphism_frequency=7.722e-01	polymorphism_score=70.6	prediction=polymorphism	ref_cov=8/10	total_cov=33/46
RA	4899	.	1	1774883	0	T	.	bias_e_value=2068300	bias_p_value=0.975525	consensus_reject=FREQUENCY_CUTOFF	consensus_score=180.8	fisher_strand_p_value=0.792974	frequency=2.278e-01	ks_quality_p_value=0.992557	major_base=T	major_cov=25/36	major_frequency=7.722e-01	minor_base=.	minor_cov=8/10	new_cov=8/10	polymorphism_frequency=2.278e-01	polymorphism_score=54.4	prediction=polymorphism	ref_cov=25/36	total_cov=33/46
RA	4900	.	1	1774884	0	T	.	bias_e_value=2068300	bias_p_value=0.975525	consensus_reject=FREQUENCY_CUTOFF	consensus_score=179.7	fisher_strand_p_value=0.792974	frequency=2.278e-01	ks_quality_p_value=0.992557	major_base=T	major_cov=25/36	major_frequency=7.722e-01	minor_base=.	minor_cov=8/10	new_cov=8/10	polymorphism_frequency=2.278e-01	polymorphism_score=54.4	prediction=polymorphism	ref_cov=25/36	total_cov=33/46
RA	4901	.	1	1776597	0	C	T	consensus_score=211.6	frequency=1	major_base=T	major_cov=41/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/31
RA	4902	.	1	1778795	0	A	C	consensus_score=226.4	frequency=1	major_base=C	major_cov=40/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/34
RA	4903	.	1	1779209	0	T	C	consensus_score=240.8	frequency=1	major_base=C	major_cov=36/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/47
RA	4904	.	1	1781842	0	T	G	consensus_score=168.4	frequency=1	major_base=G	major_cov=23/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/34
RA	4905	.	1	1781893	0	T	A	consensus_score=129.2	frequency=1	major_base=A	major_cov=16/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/31
RA	4906	.	1	1782016	0	T	C	consensus_score=98.9	frequency=1	major_base=C	major_cov=21/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/13
RA	4907	.	1	1782813	0	C	T	consensus_score=198.6	frequency=1	major_base=T	major_cov=34/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/37
RA	4908	.	1	1784825	0	G	A	bias_e_value=2120190	bias_p_value=1	consensus_score=264.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999771	major_base=A	major_cov=50/43	major_frequency=9.894e-01	minor_base=C	minor_cov=1/0	new_cov=50/43	polymorphism_frequency=9.894e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/43
RA	4909	.	1	1785263	0	A	G	consensus_score=229.9	frequency=1	major_base=G	major_cov=43/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/38
RA	4910	.	1	1785266	0	A	G	consensus_score=229.3	frequency=1	major_base=G	major_cov=43/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/38
RA	4911	.	1	1785626	0	G	A	bias_e_value=2120200	bias_p_value=1	consensus_score=201.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=35/38	major_frequency=9.865e-01	minor_base=T	minor_cov=0/1	new_cov=35/38	polymorphism_frequency=9.865e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/39
RA	4912	.	1	1789821	0	T	C	consensus_score=310.2	frequency=1	major_base=C	major_cov=61/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/48
RA	4913	.	1	1790704	0	C	T	consensus_score=197.8	frequency=1	major_base=T	major_cov=33/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/37
RA	4914	.	1	1792096	0	C	T	bias_e_value=2120190	bias_p_value=1	consensus_score=214.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999684	major_base=T	major_cov=42/37	major_frequency=9.875e-01	minor_base=A	minor_cov=1/0	new_cov=42/37	polymorphism_frequency=9.875e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/37
RA	4915	.	1	1793278	0	T	C	consensus_score=243.4	frequency=1	major_base=C	major_cov=47/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/36
RA	4916	.	1	1794192	0	A	C	bias_e_value=2120190	bias_p_value=0.999999	consensus_score=241.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998766	major_base=C	major_cov=44/36	major_frequency=9.877e-01	minor_base=.	minor_cov=1/0	new_cov=44/36	polymorphism_frequency=9.877e-01	polymorphism_score=-3.0	prediction=consensus	ref_cov=0/0	total_cov=45/36
RA	4917	.	1	1794973	0	C	A	consensus_score=221.0	frequency=1	major_base=A	major_cov=37/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/40
RA	4918	.	1	1795179	0	A	C	consensus_score=177.4	frequency=1	major_base=C	major_cov=36/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/23
RA	4919	.	1	1796242	0	A	C	consensus_score=178.2	frequency=1	major_base=C	major_cov=29/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/32
RA	4920	.	1	1796399	0	G	A	consensus_score=183.3	frequency=1	major_base=A	major_cov=32/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/33
RA	4921	.	1	1797011	0	A	G	consensus_score=302.3	frequency=1	major_base=G	major_cov=55/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/47
RA	4922	.	1	1800240	0	G	A	consensus_score=341.7	frequency=1	major_base=A	major_cov=58/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/56
RA	4923	.	1	1801637	0	A	.	consensus_score=368.5	frequency=1	major_base=.	major_cov=47/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/39
RA	4924	.	1	1804418	0	G	T	consensus_score=58.7	frequency=1	major_base=T	major_cov=11/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/12
RA	4925	.	1	1805952	0	A	G	consensus_score=216.6	frequency=1	major_base=G	major_cov=37/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/38
RA	4926	.	1	1806056	0	T	G	consensus_score=208.5	frequency=1	major_base=G	major_cov=32/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/43
RA	4927	.	1	1807055	0	G	A	consensus_score=217.8	frequency=1	major_base=A	major_cov=36/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/41
RA	4928	.	1	1807616	0	C	T	bias_e_value=1770640	bias_p_value=0.835131	consensus_score=260.4	fisher_strand_p_value=0.483871	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=44/48	major_frequency=9.892e-01	minor_base=C	minor_cov=1/0	new_cov=44/48	polymorphism_frequency=9.892e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=45/48
RA	4929	.	1	1807846	0	G	A	consensus_score=249.2	frequency=1	major_base=A	major_cov=53/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/36
RA	4930	.	1	1807912	0	T	C	consensus_score=306.0	frequency=1	major_base=C	major_cov=61/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/44
RA	4931	.	1	1808404	0	T	C	consensus_score=264.2	frequency=1	major_base=C	major_cov=44/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/46
RA	4932	.	1	1808429	0	G	A	consensus_score=275.5	frequency=1	major_base=A	major_cov=50/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/48
RA	4933	.	1	1808947	0	T	C	consensus_score=254.9	frequency=1	major_base=C	major_cov=42/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/46
RA	4934	.	1	1809839	0	G	A	consensus_score=101.3	frequency=1	major_base=A	major_cov=19/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/18
RA	4935	.	1	1809959	0	T	C	consensus_score=158.6	frequency=1	major_base=C	major_cov=35/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/19
RA	4936	.	1	1810480	0	G	A	consensus_score=226.5	frequency=1	major_base=A	major_cov=38/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/41
RA	4937	.	1	1811241	0	T	C	consensus_score=189.2	frequency=1	major_base=C	major_cov=33/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/33
RA	4938	.	1	1811311	0	G	A	consensus_score=203.8	frequency=1	major_base=A	major_cov=33/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/41
RA	4939	.	1	1813329	0	T	C	consensus_score=177.7	frequency=1	major_base=C	major_cov=37/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/25
RA	4940	.	1	1813381	0	T	C	consensus_score=166.4	frequency=1	major_base=C	major_cov=28/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/29
RA	4941	.	1	1813732	0	T	C	consensus_score=162.9	frequency=1	major_base=C	major_cov=26/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/31
RA	4942	.	1	1815930	0	T	C	consensus_score=201.7	frequency=1	major_base=C	major_cov=39/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/31
RA	4943	.	1	1816100	0	C	T	consensus_score=156.1	frequency=1	major_base=T	major_cov=30/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/25
RA	4944	.	1	1816165	0	G	A	consensus_score=192.5	frequency=1	major_base=A	major_cov=35/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/35
RA	4945	.	1	1818104	0	T	.	consensus_score=105.1	frequency=1	major_base=.	major_cov=9/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/17
RA	4946	.	1	1818292	0	G	C	consensus_score=128.3	frequency=1	major_base=C	major_cov=23/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/20
RA	4947	.	1	1819444	0	C	T	consensus_score=45.2	frequency=1	major_base=T	major_cov=9/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/9
RA	4948	.	1	1819985	0	T	C	consensus_score=110.2	frequency=1	major_base=C	major_cov=22/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/17
RA	4949	.	1	1820395	0	G	A	consensus_score=28.2	frequency=1	major_base=A	major_cov=5/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/7
RA	4950	.	1	1826563	0	C	T	consensus_score=281.0	frequency=1	major_base=T	major_cov=50/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/49
RA	4951	.	1	1829307	0	G	A	consensus_score=171.2	frequency=1	major_base=A	major_cov=38/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/23
RA	4952	.	1	1831236	0	G	A	bias_e_value=2.29808e-05	bias_p_value=1.0839e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=178.8	fisher_strand_p_value=3.65727e-13	frequency=2.336e-01	ks_quality_p_value=1	major_base=G	major_cov=64/18	major_frequency=7.664e-01	minor_base=A	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.336e-01	polymorphism_score=11.1	prediction=polymorphism	ref_cov=64/18	total_cov=64/43
RA	4953	.	1	1831245	0	C	T	bias_e_value=4.33741e-05	bias_p_value=2.04576e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=193.7	fisher_strand_p_value=7.05939e-13	frequency=2.243e-01	ks_quality_p_value=1	major_base=C	major_cov=65/18	major_frequency=7.757e-01	minor_base=T	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=2.243e-01	polymorphism_score=12.5	prediction=polymorphism	ref_cov=65/18	total_cov=65/42
RA	4954	.	1	1835350	0	T	C	consensus_score=244.6	frequency=1	major_base=C	major_cov=42/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/42
RA	4955	.	1	1835761	0	A	G	consensus_score=267.9	frequency=1	major_base=G	major_cov=41/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/51
RA	4956	.	1	1836305	0	A	C	bias_e_value=14.3915	bias_p_value=6.78784e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=77.9	fisher_strand_p_value=4.33703e-07	frequency=3.269e-01	ks_quality_p_value=1	major_base=A	major_cov=25/10	major_frequency=6.731e-01	minor_base=C	minor_cov=0/17	new_cov=0/17	polymorphism_frequency=3.269e-01	polymorphism_score=14.5	prediction=polymorphism	ref_cov=25/10	total_cov=25/27
RA	4957	.	1	1837765	0	C	T	bias_e_value=7.98464e-06	bias_p_value=3.76599e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=88.9	fisher_strand_p_value=1.2255e-13	frequency=3.382e-01	ks_quality_p_value=1	major_base=C	major_cov=5/40	major_frequency=6.618e-01	minor_base=T	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=3.382e-01	polymorphism_score=15.2	prediction=polymorphism	ref_cov=5/40	total_cov=28/40
RA	4958	.	1	1837770	0	C	T	bias_e_value=7.98442e-06	bias_p_value=3.76589e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=88.6	fisher_strand_p_value=1.2255e-13	frequency=3.382e-01	ks_quality_p_value=0.999972	major_base=C	major_cov=5/40	major_frequency=6.618e-01	minor_base=T	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=3.382e-01	polymorphism_score=15.4	prediction=polymorphism	ref_cov=5/40	total_cov=28/40
RA	4959	.	1	1837803	0	T	A	bias_e_value=0.0153034	bias_p_value=7.21791e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=129.0	fisher_strand_p_value=3.15512e-10	frequency=2.714e-01	ks_quality_p_value=1	major_base=T	major_cov=10/41	major_frequency=7.286e-01	minor_base=A	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.714e-01	polymorphism_score=10.9	prediction=polymorphism	ref_cov=10/41	total_cov=29/41
RA	4960	.	1	1838486	0	A	G	consensus_score=221.2	frequency=1	major_base=G	major_cov=43/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/31
RA	4961	.	1	1838782	0	A	G	consensus_score=200.3	frequency=1	major_base=G	major_cov=38/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/33
RA	4962	.	1	1839354	0	G	T	bias_e_value=2073630	bias_p_value=0.978037	consensus_score=175.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.797873	major_base=T	major_cov=39/23	major_frequency=9.841e-01	minor_base=G	minor_cov=1/0	new_cov=39/23	polymorphism_frequency=9.841e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=1/0	total_cov=40/23
RA	4963	.	1	1840993	0	T	C	consensus_score=198.3	frequency=1	major_base=C	major_cov=37/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/33
RA	4964	.	1	1842061	0	A	C	consensus_score=241.8	frequency=1	major_base=C	major_cov=46/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/35
RA	4965	.	1	1843153	0	A	G	bias_e_value=1679470	bias_p_value=0.792129	consensus_score=127.1	fisher_strand_p_value=0.436364	frequency=1	ks_quality_p_value=0.983306	major_base=G	major_cov=31/23	major_frequency=9.818e-01	minor_base=A	minor_cov=0/1	new_cov=31/23	polymorphism_frequency=9.818e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=31/24
RA	4966	.	1	1850366	0	A	G	consensus_score=21.8	frequency=1	major_base=G	major_cov=4/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/5
RA	4967	.	1	1854230	0	A	G	consensus_score=93.4	frequency=1	major_base=G	major_cov=15/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/17
RA	4968	.	1	1856594	0	A	G	bias_e_value=1574900	bias_p_value=0.742811	consensus_score=114.9	fisher_strand_p_value=0.375	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=25/14	major_frequency=9.750e-01	minor_base=A	minor_cov=0/1	new_cov=25/14	polymorphism_frequency=9.750e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=25/15
RA	4969	.	1	1856768	0	C	T	consensus_score=211.9	frequency=1	major_base=T	major_cov=32/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/40
RA	4970	.	1	1857405	0	G	C	consensus_score=130.8	frequency=1	major_base=C	major_cov=25/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/22
RA	4971	.	1	1857618	0	A	G	consensus_score=142.2	frequency=1	major_base=G	major_cov=27/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/21
RA	4972	.	1	1857727	0	C	G	consensus_score=145.5	frequency=1	major_base=G	major_cov=25/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/26
RA	4973	.	1	1858886	0	T	A	consensus_score=139.7	frequency=1	major_base=A	major_cov=23/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/27
RA	4974	.	1	1867444	0	A	G	consensus_score=245.1	frequency=1	major_base=G	major_cov=43/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/42
RA	4975	.	1	1869801	0	G	A	consensus_score=205.6	frequency=1	major_base=A	major_cov=33/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/39
RA	4976	.	1	1870101	0	G	A	consensus_score=184.1	frequency=1	major_base=A	major_cov=39/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/26
RA	4977	.	1	1870109	0	C	A	consensus_score=199.5	frequency=1	major_base=A	major_cov=39/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/28
RA	4978	.	1	1870135	0	G	A	consensus_score=191.3	frequency=1	major_base=A	major_cov=35/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/31
RA	4979	.	1	1870295	0	C	T	consensus_score=239.1	frequency=1	major_base=T	major_cov=49/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/36
RA	4980	.	1	1871966	0	A	G	consensus_score=241.9	frequency=1	major_base=G	major_cov=42/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/39
RA	4981	.	1	1872124	0	T	C	consensus_score=180.5	frequency=1	major_base=C	major_cov=30/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/34
RA	4982	.	1	1872968	0	T	C	consensus_score=54.8	frequency=1	major_base=C	major_cov=6/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/15
RA	4983	.	1	1873674	0	T	C	consensus_score=242.0	frequency=1	major_base=C	major_cov=43/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/42
RA	4984	.	1	1882310	0	G	A	consensus_score=331.8	frequency=1	major_base=A	major_cov=61/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/55
RA	4985	.	1	1882363	0	T	C	consensus_score=281.9	frequency=1	major_base=C	major_cov=62/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/35
RA	4986	.	1	1884642	0	C	T	consensus_score=414.3	frequency=1	major_base=T	major_cov=62/75	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/75	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/75
RA	4987	.	1	1885060	0	T	G	bias_e_value=2120190	bias_p_value=1	consensus_score=370.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999879	major_base=G	major_cov=61/67	major_frequency=9.922e-01	minor_base=A	minor_cov=0/1	new_cov=61/67	polymorphism_frequency=9.922e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/68
RA	4988	.	1	1885076	0	G	A	consensus_score=384.4	frequency=1	major_base=A	major_cov=66/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/67
RA	4989	.	1	1887213	0	G	A	consensus_score=277.4	frequency=1	major_base=A	major_cov=48/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/45
RA	4990	.	1	1888068	0	G	A	consensus_score=326.2	frequency=1	major_base=A	major_cov=60/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/51
RA	4991	.	1	1888341	0	C	T	consensus_score=428.1	frequency=1	major_base=T	major_cov=75/73	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=75/73	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=75/73
RA	4992	.	1	1888801	0	C	T	consensus_score=358.3	frequency=1	major_base=T	major_cov=60/69	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/69	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/69
RA	4993	.	1	1889419	0	G	A	bias_e_value=2106790	bias_p_value=0.993678	consensus_score=402.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.889678	major_base=A	major_cov=63/73	major_frequency=9.927e-01	minor_base=G	minor_cov=0/1	new_cov=63/73	polymorphism_frequency=9.927e-01	polymorphism_score=-5.4	prediction=consensus	ref_cov=0/1	total_cov=63/74
RA	4994	.	1	1891747	0	A	G	consensus_score=382.2	frequency=1	major_base=G	major_cov=70/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=70/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=70/56
RA	4995	.	1	1892530	0	T	G	consensus_score=308.1	frequency=1	major_base=G	major_cov=50/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/58
RA	4996	.	1	1893014	0	C	T	bias_e_value=2120200	bias_p_value=1	consensus_score=327.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=56/55	major_frequency=9.911e-01	minor_base=C	minor_cov=1/0	new_cov=56/55	polymorphism_frequency=9.911e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=57/55
RA	4997	.	1	1894195	0	A	C	bias_e_value=1723230	bias_p_value=0.812768	consensus_score=192.7	fisher_strand_p_value=0.454545	frequency=1	ks_quality_p_value=0.999534	major_base=C	major_cov=36/29	major_frequency=9.848e-01	minor_base=A	minor_cov=0/1	new_cov=36/29	polymorphism_frequency=9.848e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=36/31
RA	4998	.	1	1894230	0	A	C	bias_e_value=1692410	bias_p_value=0.798231	consensus_score=150.0	fisher_strand_p_value=0.436364	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=31/23	major_frequency=9.818e-01	minor_base=T	minor_cov=0/1	new_cov=31/23	polymorphism_frequency=9.818e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/24
RA	4999	.	1	1894312	0	C	G	bias_e_value=2004320	bias_p_value=0.945347	consensus_reject=FREQUENCY_CUTOFF	consensus_score=14.9	fisher_strand_p_value=0.688156	frequency=4.483e-01	ks_quality_p_value=1	major_base=C	major_cov=12/4	major_frequency=5.517e-01	minor_base=G	minor_cov=8/5	new_cov=8/5	polymorphism_frequency=4.483e-01	polymorphism_score=12.6	prediction=polymorphism	ref_cov=12/4	total_cov=21/9
RA	5000	.	1	1896286	0	T	C	consensus_score=305.9	frequency=1	major_base=C	major_cov=61/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/46
RA	5001	.	1	1896754	0	T	C	consensus_score=373.0	frequency=1	major_base=C	major_cov=68/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=68/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/59
RA	5002	.	1	1896811	0	A	G	consensus_score=400.3	frequency=1	major_base=G	major_cov=68/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=68/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/66
RA	5003	.	1	1896865	0	C	T	consensus_score=370.5	frequency=1	major_base=T	major_cov=65/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/59
RA	5004	.	1	1896910	0	T	G	consensus_score=387.4	frequency=1	major_base=G	major_cov=69/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=69/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=69/56
RA	5005	.	1	1899376	0	G	A	consensus_score=355.0	frequency=1	major_base=A	major_cov=58/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/66
RA	5006	.	1	1900976	0	C	T	consensus_score=303.7	frequency=1	major_base=T	major_cov=42/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/64
RA	5007	.	1	1902603	0	G	A	consensus_score=336.5	frequency=1	major_base=A	major_cov=57/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/60
RA	5008	.	1	1904067	0	T	C	bias_e_value=2092020	bias_p_value=0.986709	consensus_score=271.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.841453	major_base=C	major_cov=29/59	major_frequency=9.888e-01	minor_base=A	minor_cov=0/1	new_cov=29/59	polymorphism_frequency=9.888e-01	polymorphism_score=-4.6	prediction=consensus	ref_cov=0/0	total_cov=29/60
RA	5009	.	1	1907193	0	A	G	consensus_score=192.9	frequency=1	major_base=G	major_cov=35/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/33
RA	5010	.	1	1908013	0	G	A	consensus_score=240.0	frequency=1	major_base=A	major_cov=45/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/36
RA	5011	.	1	1909523	0	T	C	consensus_score=234.8	frequency=1	major_base=C	major_cov=47/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/30
RA	5012	.	1	1909561	0	C	T	consensus_score=224.5	frequency=1	major_base=T	major_cov=47/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/29
RA	5013	.	1	1910519	0	T	G	consensus_score=90.4	frequency=1	major_base=G	major_cov=16/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/15
RA	5014	.	1	1910616	0	G	A	consensus_score=81.5	frequency=1	major_base=A	major_cov=16/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/14
RA	5015	.	1	1911614	0	C	T	consensus_score=229.3	frequency=1	major_base=T	major_cov=38/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/43
RA	5016	.	1	1914650	0	A	G	consensus_score=227.5	frequency=1	major_base=G	major_cov=41/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/35
RA	5017	.	1	1915558	0	G	A	consensus_score=294.9	frequency=1	major_base=A	major_cov=49/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/54
RA	5018	.	1	1917492	0	A	G	consensus_score=347.3	frequency=1	major_base=G	major_cov=51/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/66
RA	5019	.	1	1918919	0	C	T	consensus_score=146.8	frequency=1	major_base=T	major_cov=20/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/32
RA	5020	.	1	1919085	0	C	T	consensus_score=257.7	frequency=1	major_base=T	major_cov=41/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/46
RA	5021	.	1	1919217	0	A	G	consensus_score=286.6	frequency=1	major_base=G	major_cov=45/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/50
RA	5022	.	1	1920466	0	G	A	consensus_score=206.5	frequency=1	major_base=A	major_cov=36/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/38
RA	5023	.	1	1923946	0	C	T	consensus_score=288.2	frequency=1	major_base=T	major_cov=60/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/41
RA	5024	.	1	1923949	0	A	G	consensus_score=306.5	frequency=1	major_base=G	major_cov=60/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/41
RA	5025	.	1	1924710	0	A	G	consensus_score=240.1	frequency=1	major_base=G	major_cov=41/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/40
RA	5026	.	1	1925181	0	C	T	bias_e_value=1036.35	bias_p_value=0.000488802	consensus_reject=FREQUENCY_CUTOFF	consensus_score=44.4	fisher_strand_p_value=4.43414e-05	frequency=3.929e-01	ks_quality_p_value=1	major_base=C	major_cov=17/17	major_frequency=6.071e-01	minor_base=T	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=3.929e-01	polymorphism_score=16.5	prediction=polymorphism	ref_cov=17/17	total_cov=40/17
RA	5027	.	1	1926496	0	C	T	consensus_score=328.0	frequency=1	major_base=T	major_cov=46/68	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/68	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/68
RA	5028	.	1	1926730	0	A	C	consensus_score=332.3	frequency=1	major_base=C	major_cov=56/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/53
RA	5029	.	1	1927104	0	A	G	consensus_score=306.1	frequency=1	major_base=G	major_cov=49/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/56
RA	5030	.	1	1927936	0	C	T	consensus_score=257.9	frequency=1	major_base=T	major_cov=53/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/39
RA	5031	.	1	1928650	0	T	G	consensus_score=316.8	frequency=1	major_base=G	major_cov=47/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/60
RA	5032	.	1	1929156	0	A	T	consensus_score=231.5	frequency=1	major_base=T	major_cov=44/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/37
RA	5033	.	1	1929268	0	G	A	bias_e_value=947305	bias_p_value=0.446801	consensus_score=177.2	fisher_strand_p_value=0.156522	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=42/26	major_frequency=9.714e-01	minor_base=G	minor_cov=0/2	new_cov=42/26	polymorphism_frequency=9.714e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/2	total_cov=42/29
RA	5034	.	1	1929354	0	G	C	bias_e_value=7.66311	bias_p_value=3.61434e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=122.9	fisher_strand_p_value=2.21424e-07	frequency=2.167e-01	ks_quality_p_value=1	major_base=G	major_cov=37/10	major_frequency=7.833e-01	minor_base=C	minor_cov=0/13	new_cov=0/13	polymorphism_frequency=2.167e-01	polymorphism_score=11.9	prediction=polymorphism	ref_cov=37/10	total_cov=37/23
RA	5035	.	1	1930838	0	G	A	consensus_score=240.2	frequency=1	major_base=A	major_cov=34/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/46
RA	5036	.	1	1933184	0	A	C	consensus_score=324.4	frequency=1	major_base=C	major_cov=50/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/56
RA	5037	.	1	1933364	0	A	C	consensus_score=264.0	frequency=1	major_base=C	major_cov=31/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/56
RA	5038	.	1	1933585	0	C	A	consensus_score=191.3	frequency=1	major_base=A	major_cov=36/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/32
RA	5039	.	1	1933621	0	A	G	consensus_score=208.2	frequency=1	major_base=G	major_cov=41/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/28
RA	5040	.	1	1936156	0	A	T	bias_e_value=2.40041	bias_p_value=1.13216e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=121.0	fisher_strand_p_value=6.44857e-08	frequency=2.241e-01	ks_quality_p_value=1	major_base=A	major_cov=8/37	major_frequency=7.759e-01	minor_base=T	minor_cov=13/0	new_cov=13/0	polymorphism_frequency=2.241e-01	polymorphism_score=10.4	prediction=polymorphism	ref_cov=8/37	total_cov=24/37
RA	5041	.	1	1936174	0	A	T	bias_e_value=0.085608	bias_p_value=4.03774e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=131.7	fisher_strand_p_value=1.91607e-09	frequency=2.727e-01	ks_quality_p_value=1	major_base=A	major_cov=10/38	major_frequency=7.273e-01	minor_base=T	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.727e-01	polymorphism_score=13.8	prediction=polymorphism	ref_cov=10/38	total_cov=28/38
RA	5042	.	1	1936589	0	T	G	consensus_score=244.8	frequency=1	major_base=G	major_cov=42/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/43
RA	5043	.	1	1936630	0	T	C	consensus_score=247.9	frequency=1	major_base=C	major_cov=42/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/46
RA	5044	.	1	1940092	0	C	G	consensus_score=254.6	frequency=1	major_base=G	major_cov=33/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/58
RA	5045	.	1	1940152	0	T	.	consensus_score=348.6	frequency=1	major_base=.	major_cov=32/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/50
RA	5046	.	1	1941564	0	A	G	consensus_score=344.8	frequency=1	major_base=G	major_cov=57/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/61
RA	5047	.	1	1944256	1	.	T	consensus_score=253.5	frequency=1	major_base=T	major_cov=50/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/40
RA	5048	.	1	1944652	0	T	G	consensus_score=225.8	frequency=1	major_base=G	major_cov=46/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/33
RA	5049	.	1	1945184	0	T	C	bias_e_value=2120050	bias_p_value=0.999933	consensus_score=190.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.988413	major_base=C	major_cov=42/23	major_frequency=9.848e-01	minor_base=.	minor_cov=1/0	new_cov=42/23	polymorphism_frequency=9.848e-01	polymorphism_score=-2.9	prediction=consensus	ref_cov=0/0	total_cov=43/23
RA	5050	.	1	1945554	0	G	A	consensus_score=214.5	frequency=1	major_base=A	major_cov=42/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/31
RA	5051	.	1	1946002	0	C	A	consensus_score=283.4	frequency=1	major_base=A	major_cov=37/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/59
RA	5052	.	1	1948712	0	G	A	bias_e_value=2.25308	bias_p_value=1.06268e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=93.0	fisher_strand_p_value=6.09838e-08	frequency=3.171e-01	ks_quality_p_value=0.98874	major_base=G	major_cov=33/23	major_frequency=6.829e-01	minor_base=A	minor_cov=0/26	new_cov=0/26	polymorphism_frequency=3.171e-01	polymorphism_score=15.7	prediction=polymorphism	ref_cov=33/23	total_cov=33/49
RA	5053	.	1	1949399	0	A	.	consensus_score=316.9	frequency=1	major_base=.	major_cov=33/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/42
RA	5054	.	1	1952276	0	T	G	consensus_score=236.2	frequency=1	major_base=G	major_cov=40/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/41
RA	5055	.	1	1952867	0	T	A	bias_e_value=4.54062e-09	bias_p_value=2.1416e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=112.7	fisher_strand_p_value=5.57333e-17	frequency=4.103e-01	ks_quality_p_value=1	major_base=T	major_cov=5/41	major_frequency=5.897e-01	minor_base=A	minor_cov=32/0	new_cov=32/0	polymorphism_frequency=4.103e-01	polymorphism_score=36.8	prediction=polymorphism	ref_cov=5/41	total_cov=37/41
RA	5056	.	1	1952896	0	T	A	bias_e_value=0.0536223	bias_p_value=2.52912e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=161.3	fisher_strand_p_value=1.17285e-09	frequency=2.530e-01	ks_quality_p_value=1	major_base=T	major_cov=17/45	major_frequency=7.470e-01	minor_base=A	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.530e-01	polymorphism_score=13.4	prediction=polymorphism	ref_cov=17/45	total_cov=39/45
RA	5057	.	1	1952938	0	T	A	bias_e_value=1.56648e-06	bias_p_value=7.38838e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=155.4	fisher_strand_p_value=2.2795e-14	frequency=3.333e-01	ks_quality_p_value=1	major_base=T	major_cov=11/47	major_frequency=6.667e-01	minor_base=A	minor_cov=29/0	new_cov=29/0	polymorphism_frequency=3.333e-01	polymorphism_score=23.8	prediction=polymorphism	ref_cov=11/47	total_cov=40/47
RA	5058	.	1	1953059	0	C	T	consensus_score=132.0	frequency=1	major_base=T	major_cov=16/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/32
RA	5059	.	1	1953627	0	T	G	bias_e_value=1.70304e-07	bias_p_value=8.03246e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=192.1	fisher_strand_p_value=2.31487e-15	frequency=2.816e-01	ks_quality_p_value=1	major_base=T	major_cov=14/60	major_frequency=7.184e-01	minor_base=G	minor_cov=29/0	new_cov=29/0	polymorphism_frequency=2.816e-01	polymorphism_score=21.2	prediction=polymorphism	ref_cov=14/60	total_cov=43/60
RA	5060	.	1	1953657	0	G	T	bias_e_value=307548	bias_p_value=0.145057	consensus_score=261.9	fisher_strand_p_value=0.0328493	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=42/60	major_frequency=9.623e-01	minor_base=C	minor_cov=4/0	new_cov=42/60	polymorphism_frequency=9.623e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/62
RA	5061	.	1	1954971	0	A	G	consensus_score=228.2	frequency=1	major_base=G	major_cov=37/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/42
RA	5062	.	1	1955055	0	C	T	bias_e_value=1991200	bias_p_value=0.939161	consensus_score=239.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.672109	major_base=T	major_cov=48/39	major_frequency=9.886e-01	minor_base=C	minor_cov=1/0	new_cov=48/39	polymorphism_frequency=9.886e-01	polymorphism_score=-4.9	prediction=consensus	ref_cov=1/0	total_cov=49/39
RA	5063	.	1	1955244	0	T	C	consensus_score=230.6	frequency=1	major_base=C	major_cov=37/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/44
RA	5064	.	1	1956821	0	G	A	bias_e_value=2120170	bias_p_value=0.999988	consensus_score=215.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.995074	major_base=A	major_cov=35/45	major_frequency=9.877e-01	minor_base=C	minor_cov=0/1	new_cov=35/45	polymorphism_frequency=9.877e-01	polymorphism_score=-5.9	prediction=consensus	ref_cov=0/0	total_cov=35/46
RA	5065	.	1	1958121	0	C	A	consensus_score=266.0	frequency=1	major_base=A	major_cov=55/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/34
RA	5066	.	1	1958967	0	G	A	consensus_score=236.8	frequency=1	major_base=A	major_cov=47/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/36
RA	5067	.	1	1959382	0	A	G	consensus_score=253.7	frequency=1	major_base=G	major_cov=34/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/53
RA	5068	.	1	1960576	0	C	T	consensus_score=237.0	frequency=1	major_base=T	major_cov=33/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/46
RA	5069	.	1	1961566	0	A	G	consensus_score=172.8	frequency=1	major_base=G	major_cov=32/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/30
RA	5070	.	1	1962070	0	T	C	consensus_score=293.3	frequency=1	major_base=C	major_cov=53/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/48
RA	5071	.	1	1962709	0	C	T	consensus_score=217.8	frequency=1	major_base=T	major_cov=30/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/43
RA	5072	.	1	1964214	0	A	G	consensus_score=243.9	frequency=1	major_base=G	major_cov=49/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/36
RA	5073	.	1	1964663	0	T	C	consensus_score=177.0	frequency=1	major_base=C	major_cov=30/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/29
RA	5074	.	1	1966510	0	G	A	consensus_score=211.1	frequency=1	major_base=A	major_cov=42/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/32
RA	5075	.	1	1966524	0	G	A	consensus_score=194.1	frequency=1	major_base=A	major_cov=36/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/30
RA	5076	.	1	1966936	0	T	G	consensus_score=212.9	frequency=1	major_base=G	major_cov=38/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/35
RA	5077	.	1	1967829	0	T	C	consensus_score=233.3	frequency=1	major_base=C	major_cov=45/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/35
RA	5078	.	1	1968720	0	G	A	consensus_score=227.8	frequency=1	major_base=A	major_cov=45/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/36
RA	5079	.	1	1968905	0	A	C	consensus_score=215.8	frequency=1	major_base=C	major_cov=31/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/41
RA	5080	.	1	1969362	0	T	G	consensus_score=228.3	frequency=1	major_base=G	major_cov=32/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/47
RA	5081	.	1	1970853	0	T	C	consensus_score=162.7	frequency=1	major_base=C	major_cov=33/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/24
RA	5082	.	1	1970881	0	C	T	consensus_score=174.7	frequency=1	major_base=T	major_cov=33/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/28
RA	5083	.	1	1971247	0	C	T	consensus_score=133.5	frequency=1	major_base=T	major_cov=25/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/23
RA	5084	.	1	1971251	0	A	C	bias_e_value=1215480	bias_p_value=0.573289	consensus_score=131.0	fisher_strand_p_value=0.234043	frequency=1	ks_quality_p_value=0.998111	major_base=C	major_cov=24/21	major_frequency=9.574e-01	minor_base=A	minor_cov=0/2	new_cov=24/21	polymorphism_frequency=9.574e-01	polymorphism_score=-5.7	prediction=consensus	ref_cov=0/2	total_cov=24/23
RA	5085	.	1	1971839	0	G	C	consensus_score=267.9	frequency=1	major_base=C	major_cov=48/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/46
RA	5086	.	1	1972594	0	T	G	consensus_score=217.0	frequency=1	major_base=G	major_cov=37/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/37
RA	5087	.	1	1974745	0	C	T	consensus_score=217.5	frequency=1	major_base=T	major_cov=41/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/36
RA	5088	.	1	1974952	0	T	C	consensus_score=210.7	frequency=1	major_base=C	major_cov=32/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/43
RA	5089	.	1	1975989	0	T	C	consensus_score=224.6	frequency=1	major_base=C	major_cov=36/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/44
RA	5090	.	1	1978545	0	T	C	consensus_score=225.9	frequency=1	major_base=C	major_cov=45/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/33
RA	5091	.	1	1978898	0	G	A	consensus_score=204.3	frequency=1	major_base=A	major_cov=38/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/37
RA	5092	.	1	1979823	0	C	T	consensus_score=247.8	frequency=1	major_base=T	major_cov=40/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/47
RA	5093	.	1	1979952	0	C	T	consensus_score=269.3	frequency=1	major_base=T	major_cov=44/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/52
RA	5094	.	1	1981367	0	G	A	consensus_score=220.2	frequency=1	major_base=A	major_cov=29/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/46
RA	5095	.	1	1981964	0	T	C	consensus_score=269.6	frequency=1	major_base=C	major_cov=51/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/41
RA	5096	.	1	1982308	0	T	G	consensus_score=289.0	frequency=1	major_base=G	major_cov=50/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/49
RA	5097	.	1	1982654	0	T	C	consensus_score=229.0	frequency=1	major_base=C	major_cov=44/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/32
RA	5098	.	1	1982675	0	T	C	consensus_score=203.0	frequency=1	major_base=C	major_cov=42/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/27
RA	5099	.	1	1982699	0	T	C	consensus_score=207.2	frequency=1	major_base=C	major_cov=39/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/32
RA	5100	.	1	1982709	0	A	C	consensus_score=202.8	frequency=1	major_base=C	major_cov=38/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/33
RA	5101	.	1	1982730	0	T	C	consensus_score=221.1	frequency=1	major_base=C	major_cov=41/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/33
RA	5102	.	1	1982753	0	A	G	consensus_score=236.2	frequency=1	major_base=G	major_cov=41/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/40
RA	5103	.	1	1982765	0	T	C	consensus_score=240.0	frequency=1	major_base=C	major_cov=42/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/40
RA	5104	.	1	1982792	0	T	C	consensus_score=226.2	frequency=1	major_base=C	major_cov=37/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/42
RA	5105	.	1	1982798	0	A	G	consensus_score=217.5	frequency=1	major_base=G	major_cov=36/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/41
RA	5106	.	1	1982799	0	G	C	consensus_score=217.3	frequency=1	major_base=C	major_cov=36/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/41
RA	5107	.	1	1982801	0	A	G	consensus_score=226.2	frequency=1	major_base=G	major_cov=36/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/41
RA	5108	.	1	1982837	0	T	C	consensus_score=231.0	frequency=1	major_base=C	major_cov=35/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/46
RA	5109	.	1	1982842	0	G	A	consensus_score=227.9	frequency=1	major_base=A	major_cov=36/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/43
RA	5110	.	1	1982873	0	C	T	consensus_score=202.3	frequency=1	major_base=T	major_cov=35/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/38
RA	5111	.	1	1982883	1	.	T	bias_e_value=1773470	bias_p_value=0.836465	consensus_score=194.3	fisher_strand_p_value=0.485714	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=33/36	major_frequency=9.857e-01	minor_base=A	minor_cov=1/0	new_cov=33/36	polymorphism_frequency=9.857e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=0/0	total_cov=34/36
RA	5112	.	1	1982883	2	.	C	consensus_score=209.4	frequency=1	major_base=C	major_cov=34/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/36
RA	5113	.	1	1982887	0	C	T	consensus_score=196.3	frequency=1	major_base=T	major_cov=34/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/36
RA	5114	.	1	1982896	0	A	.	consensus_score=302.5	frequency=1	major_base=.	major_cov=34/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/37
RA	5115	.	1	1983032	0	C	A	consensus_score=219.7	frequency=1	major_base=A	major_cov=44/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/34
RA	5116	.	1	1983092	0	C	T	bias_e_value=2120200	bias_p_value=1	consensus_score=237.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=49/34	major_frequency=9.881e-01	minor_base=C	minor_cov=1/0	new_cov=49/34	polymorphism_frequency=9.881e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=50/34
RA	5117	.	1	1983098	0	C	A	consensus_score=233.8	frequency=1	major_base=A	major_cov=50/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/34
RA	5118	.	1	1983113	0	G	A	consensus_score=259.2	frequency=1	major_base=A	major_cov=54/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/38
RA	5119	.	1	1983170	0	C	T	consensus_score=292.3	frequency=1	major_base=T	major_cov=53/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/49
RA	5120	.	1	1983182	0	A	G	consensus_score=291.3	frequency=1	major_base=G	major_cov=53/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/45
RA	5121	.	1	1983209	0	C	T	consensus_score=300.5	frequency=1	major_base=T	major_cov=57/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/46
RA	5122	.	1	1983212	0	C	T	consensus_score=287.6	frequency=1	major_base=T	major_cov=57/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/46
RA	5123	.	1	1983218	0	T	C	consensus_score=315.1	frequency=1	major_base=C	major_cov=61/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/48
RA	5124	.	1	1983257	0	A	G	consensus_score=287.5	frequency=1	major_base=G	major_cov=54/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/48
RA	5125	.	1	1983416	0	C	T	consensus_score=214.6	frequency=1	major_base=T	major_cov=37/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/39
RA	5126	.	1	1983446	0	A	G	consensus_score=211.0	frequency=1	major_base=G	major_cov=29/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/42
RA	5127	.	1	1983461	0	C	T	consensus_score=204.5	frequency=1	major_base=T	major_cov=33/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/41
RA	5128	.	1	1983467	0	C	T	consensus_score=200.1	frequency=1	major_base=T	major_cov=35/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/38
RA	5129	.	1	1983497	0	C	T	consensus_score=222.6	frequency=1	major_base=T	major_cov=37/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/41
RA	5130	.	1	1983539	0	C	T	consensus_score=270.4	frequency=1	major_base=T	major_cov=44/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/51
RA	5131	.	1	1983569	0	T	C	consensus_score=295.1	frequency=1	major_base=C	major_cov=47/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/53
RA	5132	.	1	1983674	0	T	C	consensus_score=317.5	frequency=1	major_base=C	major_cov=51/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/60
RA	5133	.	1	1983677	0	C	T	consensus_score=301.2	frequency=1	major_base=T	major_cov=51/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/60
RA	5134	.	1	1983713	0	A	G	consensus_score=304.1	frequency=1	major_base=G	major_cov=42/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/61
RA	5135	.	1	1983740	0	T	C	consensus_score=276.8	frequency=1	major_base=C	major_cov=39/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/58
RA	5136	.	1	1983820	0	C	T	bias_e_value=1436450	bias_p_value=0.677507	consensus_score=208.8	fisher_strand_p_value=0.402597	frequency=1	ks_quality_p_value=0.779466	major_base=T	major_cov=30/46	major_frequency=9.870e-01	minor_base=C	minor_cov=1/0	new_cov=30/46	polymorphism_frequency=9.870e-01	polymorphism_score=-5.0	prediction=consensus	ref_cov=1/0	total_cov=31/46
RA	5137	.	1	1983877	0	G	A	consensus_score=237.4	frequency=1	major_base=A	major_cov=36/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/45
RA	5138	.	1	1983957	0	C	A	bias_e_value=2120190	bias_p_value=1	consensus_score=182.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999548	major_base=A	major_cov=29/37	major_frequency=9.851e-01	minor_base=G	minor_cov=0/1	new_cov=29/37	polymorphism_frequency=9.851e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/38
RA	5139	.	1	1983985	0	A	G	consensus_score=199.4	frequency=1	major_base=G	major_cov=31/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/36
RA	5140	.	1	1984003	0	C	T	consensus_score=181.5	frequency=1	major_base=T	major_cov=31/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/32
RA	5141	.	1	1984013	0	C	T	consensus_score=170.6	frequency=1	major_base=T	major_cov=36/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/24
RA	5142	.	1	1984036	0	T	C	consensus_score=200.1	frequency=1	major_base=C	major_cov=40/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/28
RA	5143	.	1	1984051	0	T	C	consensus_score=189.1	frequency=1	major_base=C	major_cov=38/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/26
RA	5144	.	1	1984069	0	A	G	consensus_score=186.1	frequency=1	major_base=G	major_cov=39/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/29
RA	5145	.	1	1984090	0	T	C	consensus_score=200.3	frequency=1	major_base=C	major_cov=38/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/33
RA	5146	.	1	1984114	0	T	C	consensus_score=205.4	frequency=1	major_base=C	major_cov=35/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/35
RA	5147	.	1	1984138	0	G	A	consensus_score=213.9	frequency=1	major_base=A	major_cov=36/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/39
RA	5148	.	1	1984161	0	T	C	consensus_score=232.0	frequency=1	major_base=C	major_cov=41/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/39
RA	5149	.	1	1984264	0	T	C	consensus_score=190.8	frequency=1	major_base=C	major_cov=35/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/32
RA	5150	.	1	1984285	0	T	C	consensus_score=179.4	frequency=1	major_base=C	major_cov=33/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/30
RA	5151	.	1	1984291	0	A	C	consensus_score=176.0	frequency=1	major_base=C	major_cov=31/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/31
RA	5152	.	1	1984330	0	A	G	consensus_score=167.1	frequency=1	major_base=G	major_cov=33/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/24
RA	5153	.	1	1984334	0	A	G	consensus_score=161.5	frequency=1	major_base=G	major_cov=33/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/24
RA	5154	.	1	1984363	0	C	T	consensus_score=201.4	frequency=1	major_base=T	major_cov=37/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/34
RA	5155	.	1	1984402	0	G	C	consensus_score=178.8	frequency=1	major_base=C	major_cov=31/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/32
RA	5156	.	1	1984405	0	A	G	consensus_score=182.7	frequency=1	major_base=G	major_cov=31/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/32
RA	5157	.	1	1984414	0	C	T	consensus_score=203.9	frequency=1	major_base=T	major_cov=38/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/32
RA	5158	.	1	1984423	0	C	T	bias_e_value=2118700	bias_p_value=0.999294	consensus_score=183.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.962663	major_base=T	major_cov=40/32	major_frequency=9.863e-01	minor_base=G	minor_cov=1/0	new_cov=40/32	polymorphism_frequency=9.863e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/32
RA	5159	.	1	1984430	0	C	T	consensus_score=211.7	frequency=1	major_base=T	major_cov=43/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/35
RA	5160	.	1	1984441	0	T	G	consensus_score=227.4	frequency=1	major_base=G	major_cov=44/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/37
RA	5161	.	1	1984450	0	C	T	consensus_score=215.1	frequency=1	major_base=T	major_cov=45/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/38
RA	5162	.	1	1984504	0	A	G	consensus_score=224.6	frequency=1	major_base=G	major_cov=36/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/44
RA	5163	.	1	1984513	0	G	A	consensus_score=240.0	frequency=1	major_base=A	major_cov=38/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/45
RA	5164	.	1	1984531	0	A	G	consensus_score=229.9	frequency=1	major_base=G	major_cov=37/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/45
RA	5165	.	1	1984594	0	C	T	consensus_score=191.6	frequency=1	major_base=T	major_cov=37/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/34
RA	5166	.	1	1984609	0	C	T	consensus_score=183.5	frequency=1	major_base=T	major_cov=35/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/29
RA	5167	.	1	1984633	0	G	A	consensus_score=185.4	frequency=1	major_base=A	major_cov=31/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/35
RA	5168	.	1	1984669	0	A	G	consensus_score=162.7	frequency=1	major_base=G	major_cov=23/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/33
RA	5169	.	1	1984693	0	C	T	consensus_score=132.4	frequency=1	major_base=T	major_cov=26/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/21
RA	5170	.	1	1984696	0	T	C	consensus_score=137.4	frequency=1	major_base=C	major_cov=26/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/21
RA	5171	.	1	1984726	0	A	G	consensus_score=155.5	frequency=1	major_base=G	major_cov=31/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/22
RA	5172	.	1	1984762	0	C	T	consensus_score=158.3	frequency=1	major_base=T	major_cov=32/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/26
RA	5173	.	1	1984777	0	G	T	bias_e_value=1664910	bias_p_value=0.785262	consensus_score=160.5	fisher_strand_p_value=0.421053	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=33/23	major_frequency=9.825e-01	minor_base=C	minor_cov=0/1	new_cov=33/23	polymorphism_frequency=9.825e-01	polymorphism_score=-6.5	prediction=consensus	ref_cov=0/0	total_cov=33/24
RA	5174	.	1	1984841	1	.	A	consensus_score=142.9	frequency=1	major_base=A	major_cov=27/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/24
RA	5175	.	1	1984848	0	T	.	consensus_score=195.0	frequency=1	major_base=.	major_cov=23/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/24
RA	5176	.	1	1984853	0	T	C	consensus_score=138.6	frequency=1	major_base=C	major_cov=23/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/24
RA	5177	.	1	1984858	0	C	A	consensus_score=132.2	frequency=1	major_base=A	major_cov=23/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/24
RA	5178	.	1	1984859	1	.	A	consensus_score=125.3	frequency=1	major_base=A	major_cov=23/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/21
RA	5179	.	1	1984874	0	A	G	consensus_score=113.0	frequency=1	major_base=G	major_cov=21/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/19
RA	5180	.	1	1984876	0	C	G	consensus_score=114.6	frequency=1	major_base=G	major_cov=21/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/19
RA	5181	.	1	1984877	0	G	A	consensus_score=109.4	frequency=1	major_base=A	major_cov=21/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/19
RA	5182	.	1	1984899	1	.	C	consensus_score=101.0	frequency=1	major_base=C	major_cov=20/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/17
RA	5183	.	1	1984900	0	T	G	consensus_score=104.3	frequency=1	major_base=G	major_cov=20/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/17
RA	5184	.	1	1984902	0	A	G	consensus_score=105.0	frequency=1	major_base=G	major_cov=20/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/17
RA	5185	.	1	1984906	0	G	A	consensus_score=104.1	frequency=1	major_base=A	major_cov=20/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/17
RA	5186	.	1	1984942	0	A	.	bias_e_value=637397	bias_p_value=0.300631	consensus_reject=FREQUENCY_CUTOFF	consensus_score=90.6	fisher_strand_p_value=0.467449	frequency=7.907e-01	ks_quality_p_value=0.187161	major_base=.	major_cov=17/17	major_frequency=7.907e-01	minor_base=A	minor_cov=3/6	new_cov=17/17	polymorphism_frequency=7.907e-01	polymorphism_score=32.7	prediction=polymorphism	ref_cov=3/6	total_cov=20/23
RA	5187	.	1	1984946	0	C	.	bias_e_value=31247.6	bias_p_value=0.0147381	consensus_reject=FREQUENCY_CUTOFF	consensus_score=89.3	fisher_strand_p_value=0.467449	frequency=2.093e-01	ks_quality_p_value=0.00438507	major_base=C	major_cov=17/17	major_frequency=7.907e-01	minor_base=.	minor_cov=3/6	new_cov=3/6	polymorphism_frequency=2.093e-01	polymorphism_score=28.3	prediction=polymorphism	ref_cov=17/17	total_cov=20/23
RA	5188	.	1	1984962	0	C	G	consensus_score=83.4	frequency=1	major_base=G	major_cov=13/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/18
RA	5189	.	1	1984963	0	A	G	consensus_score=87.3	frequency=1	major_base=G	major_cov=13/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/18
RA	5190	.	1	1984964	0	C	T	bias_e_value=147743	bias_p_value=0.0696838	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=7.0	fisher_strand_p_value=0.484035	frequency=6.129e-01	ks_quality_p_value=0.0269658	major_base=T	major_cov=9/10	major_frequency=6.129e-01	minor_base=C	minor_cov=4/8	new_cov=9/10	polymorphism_frequency=6.129e-01	polymorphism_score=23.6	prediction=polymorphism	ref_cov=4/8	total_cov=13/18
RA	5191	.	1	1984969	0	A	T	bias_e_value=263967	bias_p_value=0.124501	consensus_reject=FREQUENCY_CUTOFF	consensus_score=19.1	fisher_strand_p_value=0.484035	frequency=3.871e-01	ks_quality_p_value=0.0557694	major_base=A	major_cov=9/10	major_frequency=6.129e-01	minor_base=T	minor_cov=4/8	new_cov=4/8	polymorphism_frequency=3.871e-01	polymorphism_score=36.3	prediction=polymorphism	ref_cov=9/10	total_cov=13/18
RA	5192	.	1	1984972	0	C	T	bias_e_value=693068	bias_p_value=0.326889	consensus_reject=FREQUENCY_CUTOFF	consensus_score=10.7	fisher_strand_p_value=0.484035	frequency=3.871e-01	ks_quality_p_value=0.203583	major_base=C	major_cov=9/10	major_frequency=6.129e-01	minor_base=T	minor_cov=4/8	new_cov=4/8	polymorphism_frequency=3.871e-01	polymorphism_score=22.3	prediction=polymorphism	ref_cov=9/10	total_cov=13/18
RA	5193	.	1	1984973	0	G	A	bias_e_value=1199330	bias_p_value=0.56567	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=9.3	fisher_strand_p_value=0.465082	frequency=4.000e-01	ks_quality_p_value=0.491098	major_base=G	major_cov=9/9	major_frequency=6.000e-01	minor_base=A	minor_cov=4/8	new_cov=4/8	polymorphism_frequency=4.000e-01	polymorphism_score=21.9	prediction=polymorphism	ref_cov=9/9	total_cov=13/17
RA	5194	.	1	1984984	0	C	T	bias_e_value=5.44095	bias_p_value=2.56625e-06	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-3.3	fisher_strand_p_value=0.716841	frequency=5.484e-01	ks_quality_p_value=2.14525e-07	major_base=T	major_cov=8/9	major_frequency=5.484e-01	minor_base=C	minor_cov=5/9	new_cov=8/9	polymorphism_frequency=5.484e-01	polymorphism_score=31.3	prediction=polymorphism	ref_cov=5/9	total_cov=13/18
RA	5195	.	1	1984985	0	C	A	bias_e_value=950.417	bias_p_value=0.000448269	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=2.8	fisher_strand_p_value=0.716841	frequency=4.516e-01	ks_quality_p_value=5.62418e-05	major_base=C	major_cov=8/9	major_frequency=5.484e-01	minor_base=A	minor_cov=5/9	new_cov=5/9	polymorphism_frequency=4.516e-01	polymorphism_score=35.5	prediction=polymorphism	ref_cov=8/9	total_cov=13/18
RA	5196	.	1	1984992	0	G	A	consensus_score=34.4	frequency=1	major_base=A	major_cov=5/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/9
RA	5197	.	1	1984995	0	C	A	consensus_score=36.1	frequency=1	major_base=A	major_cov=5/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/9
RA	5198	.	1	1985022	0	C	T	consensus_score=42.9	frequency=1	major_base=T	major_cov=5/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/12
RA	5199	.	1	1985025	0	A	C	consensus_score=43.7	frequency=1	major_base=C	major_cov=5/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/12
RA	5200	.	1	1985037	0	C	T	consensus_score=41.7	frequency=1	major_base=T	major_cov=5/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/12
RA	5201	.	1	1985049	0	T	C	consensus_score=54.3	frequency=1	major_base=C	major_cov=7/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/12
RA	5202	.	1	1985078	0	T	C	consensus_score=55.5	frequency=1	major_base=C	major_cov=8/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/13
RA	5203	.	1	1985085	0	C	T	consensus_score=55.1	frequency=1	major_base=T	major_cov=8/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/13
RA	5204	.	1	1985087	0	G	A	consensus_score=55.3	frequency=1	major_base=A	major_cov=8/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/13
RA	5205	.	1	1985158	0	A	G	consensus_score=109.6	frequency=1	major_base=G	major_cov=18/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/21
RA	5206	.	1	1985176	0	G	A	consensus_score=125.3	frequency=1	major_base=A	major_cov=26/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/19
RA	5207	.	1	1985221	0	G	A	consensus_score=145.7	frequency=1	major_base=A	major_cov=31/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/21
RA	5208	.	1	1985227	0	T	C	consensus_score=152.9	frequency=1	major_base=C	major_cov=32/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/21
RA	5209	.	1	1985278	0	C	T	consensus_score=161.6	frequency=1	major_base=T	major_cov=34/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/23
RA	5210	.	1	1985344	0	C	T	consensus_score=164.8	frequency=1	major_base=T	major_cov=34/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/25
RA	5211	.	1	1985350	0	A	G	consensus_score=182.6	frequency=1	major_base=G	major_cov=34/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/26
RA	5212	.	1	1985353	0	A	G	consensus_score=182.6	frequency=1	major_base=G	major_cov=34/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/26
RA	5213	.	1	1985380	0	G	A	consensus_score=177.4	frequency=1	major_base=A	major_cov=39/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/24
RA	5214	.	1	1985392	0	A	G	consensus_score=177.2	frequency=1	major_base=G	major_cov=39/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/25
RA	5215	.	1	1985395	0	C	G	consensus_score=180.5	frequency=1	major_base=G	major_cov=39/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/25
RA	5216	.	1	1985443	0	A	G	consensus_score=175.1	frequency=1	major_base=G	major_cov=38/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/24
RA	5217	.	1	1985524	0	T	C	consensus_score=187.8	frequency=1	major_base=C	major_cov=36/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/27
RA	5218	.	1	1985533	0	T	C	consensus_score=185.4	frequency=1	major_base=C	major_cov=35/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/29
RA	5219	.	1	1985545	0	T	C	consensus_score=230.4	frequency=1	major_base=C	major_cov=42/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/38
RA	5220	.	1	1985554	0	A	G	consensus_score=204.6	frequency=1	major_base=G	major_cov=39/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/34
RA	5221	.	1	1985599	0	T	C	consensus_score=258.2	frequency=1	major_base=C	major_cov=45/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/39
RA	5222	.	1	1985710	0	G	A	consensus_score=266.9	frequency=1	major_base=A	major_cov=36/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/58
RA	5223	.	1	1985743	0	C	T	consensus_score=245.6	frequency=1	major_base=T	major_cov=36/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/51
RA	5224	.	1	1985776	0	C	T	consensus_score=230.5	frequency=1	major_base=T	major_cov=32/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/50
RA	5225	.	1	1985791	0	T	C	consensus_score=227.2	frequency=1	major_base=C	major_cov=32/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/44
RA	5226	.	1	1985851	0	C	T	consensus_score=178.1	frequency=1	major_base=T	major_cov=32/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/32
RA	5227	.	1	1985865	0	G	A	consensus_score=180.4	frequency=1	major_base=A	major_cov=34/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/31
RA	5228	.	1	1985869	0	T	C	consensus_score=188.0	frequency=1	major_base=C	major_cov=33/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/31
RA	5229	.	1	1985908	0	C	T	consensus_score=187.5	frequency=1	major_base=T	major_cov=31/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/36
RA	5230	.	1	1985971	0	T	C	consensus_score=163.7	frequency=1	major_base=C	major_cov=26/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/28
RA	5231	.	1	1985992	0	T	C	consensus_score=157.9	frequency=1	major_base=C	major_cov=26/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/30
RA	5232	.	1	1986022	0	T	C	consensus_score=163.6	frequency=1	major_base=C	major_cov=28/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/26
RA	5233	.	1	1986103	0	C	T	consensus_score=167.2	frequency=1	major_base=T	major_cov=27/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/32
RA	5234	.	1	1986222	0	G	C	consensus_score=179.1	frequency=1	major_base=C	major_cov=30/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/29
RA	5235	.	1	1986277	0	A	G	consensus_score=180.6	frequency=1	major_base=G	major_cov=31/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/32
RA	5236	.	1	1986292	0	C	G	consensus_score=192.5	frequency=1	major_base=G	major_cov=33/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/34
RA	5237	.	1	1986397	0	T	C	consensus_score=229.6	frequency=1	major_base=C	major_cov=40/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/35
RA	5238	.	1	1986450	0	C	T	consensus_score=248.8	frequency=1	major_base=T	major_cov=41/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/42
RA	5239	.	1	1986557	0	T	C	consensus_score=141.6	frequency=1	major_base=C	major_cov=25/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/27
RA	5240	.	1	1986589	0	G	T	consensus_score=168.3	frequency=1	major_base=T	major_cov=28/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/32
RA	5241	.	1	1986597	0	A	G	consensus_score=176.6	frequency=1	major_base=G	major_cov=30/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/30
RA	5242	.	1	1986621	0	C	T	consensus_score=180.9	frequency=1	major_base=T	major_cov=30/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/35
RA	5243	.	1	1986666	0	A	G	consensus_score=225.1	frequency=1	major_base=G	major_cov=35/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/40
RA	5244	.	1	1986717	0	A	G	consensus_score=204.9	frequency=1	major_base=G	major_cov=35/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/39
RA	5245	.	1	1986725	0	T	C	consensus_score=228.8	frequency=1	major_base=C	major_cov=39/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/38
RA	5246	.	1	1986738	0	A	G	consensus_score=205.0	frequency=1	major_base=G	major_cov=33/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/34
RA	5247	.	1	1986812	0	T	G	consensus_score=210.7	frequency=1	major_base=G	major_cov=33/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/41
RA	5248	.	1	1986827	0	G	A	consensus_score=202.3	frequency=1	major_base=A	major_cov=33/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/40
RA	5249	.	1	1986852	0	A	G	consensus_score=202.7	frequency=1	major_base=G	major_cov=33/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/36
RA	5250	.	1	1986869	0	A	G	consensus_score=192.7	frequency=1	major_base=G	major_cov=34/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/34
RA	5251	.	1	1986894	0	C	A	consensus_score=182.1	frequency=1	major_base=A	major_cov=33/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/32
RA	5252	.	1	1986936	0	T	G	consensus_score=167.9	frequency=1	major_base=G	major_cov=35/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/25
RA	5253	.	1	1986974	0	G	A	consensus_score=185.7	frequency=1	major_base=A	major_cov=34/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/32
RA	5254	.	1	1987040	0	A	G	consensus_score=192.6	frequency=1	major_base=G	major_cov=36/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/30
RA	5255	.	1	1987050	0	G	T	consensus_score=190.2	frequency=1	major_base=T	major_cov=37/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/30
RA	5256	.	1	1987062	0	C	T	consensus_score=189.8	frequency=1	major_base=T	major_cov=36/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/31
RA	5257	.	1	1987083	0	C	T	consensus_score=217.3	frequency=1	major_base=T	major_cov=39/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/39
RA	5258	.	1	1987098	0	G	A	consensus_score=230.0	frequency=1	major_base=A	major_cov=40/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/40
RA	5259	.	1	1987143	0	G	A	consensus_score=202.9	frequency=1	major_base=A	major_cov=34/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/38
RA	5260	.	1	1987164	0	C	T	consensus_score=192.4	frequency=1	major_base=T	major_cov=30/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/35
RA	5261	.	1	1987225	0	T	C	consensus_score=204.5	frequency=1	major_base=C	major_cov=35/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/32
RA	5262	.	1	1987293	0	G	A	consensus_score=203.6	frequency=1	major_base=A	major_cov=33/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/39
RA	5263	.	1	1987353	0	C	T	bias_e_value=2120200	bias_p_value=1	consensus_score=196.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=36/30	major_frequency=9.851e-01	minor_base=A	minor_cov=1/0	new_cov=36/30	polymorphism_frequency=9.851e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/30
RA	5264	.	1	1987356	0	A	G	consensus_score=193.3	frequency=1	major_base=G	major_cov=37/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/30
RA	5265	.	1	1987416	0	A	G	consensus_score=220.1	frequency=1	major_base=G	major_cov=42/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/37
RA	5266	.	1	1987509	0	G	A	consensus_score=205.0	frequency=1	major_base=A	major_cov=34/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/39
RA	5267	.	1	1987536	0	C	A	consensus_score=224.0	frequency=1	major_base=A	major_cov=38/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/40
RA	5268	.	1	1987538	0	A	G	consensus_score=232.5	frequency=1	major_base=G	major_cov=38/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/40
RA	5269	.	1	1987554	0	T	C	consensus_score=216.4	frequency=1	major_base=C	major_cov=33/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/43
RA	5270	.	1	1987569	0	T	C	consensus_score=226.1	frequency=1	major_base=C	major_cov=33/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/42
RA	5271	.	1	1987572	0	A	G	consensus_score=218.3	frequency=1	major_base=G	major_cov=33/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/42
RA	5272	.	1	1987588	0	A	G	consensus_score=223.3	frequency=1	major_base=G	major_cov=30/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/46
RA	5273	.	1	1987605	0	T	C	consensus_score=217.4	frequency=1	major_base=C	major_cov=28/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/44
RA	5274	.	1	1987830	0	T	A	consensus_score=220.9	frequency=1	major_base=A	major_cov=37/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/40
RA	5275	.	1	1987833	0	A	G	consensus_score=217.1	frequency=1	major_base=G	major_cov=37/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/40
RA	5276	.	1	1987914	0	C	T	consensus_score=233.9	frequency=1	major_base=T	major_cov=38/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/42
RA	5277	.	1	1987941	0	G	A	consensus_score=250.5	frequency=1	major_base=A	major_cov=40/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/48
RA	5278	.	1	1987983	0	A	G	consensus_score=231.0	frequency=1	major_base=G	major_cov=34/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/43
RA	5279	.	1	1987995	0	C	T	bias_e_value=1725500	bias_p_value=0.813841	consensus_score=222.8	fisher_strand_p_value=0.455696	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=35/43	major_frequency=9.873e-01	minor_base=A	minor_cov=1/0	new_cov=35/43	polymorphism_frequency=9.873e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/43
RA	5280	.	1	1988006	0	A	G	consensus_score=226.0	frequency=1	major_base=G	major_cov=33/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/43
RA	5281	.	1	1988028	0	A	G	consensus_score=220.9	frequency=1	major_base=G	major_cov=34/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/40
RA	5282	.	1	1988040	0	A	C	consensus_score=218.6	frequency=1	major_base=C	major_cov=31/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/42
RA	5283	.	1	1988054	0	A	G	consensus_score=210.7	frequency=1	major_base=G	major_cov=34/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/38
RA	5284	.	1	1988055	0	G	C	consensus_score=206.6	frequency=1	major_base=C	major_cov=34/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/38
RA	5285	.	1	1988058	0	T	C	consensus_score=202.1	frequency=1	major_base=C	major_cov=34/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/38
RA	5286	.	1	1988066	0	T	C	consensus_score=208.4	frequency=1	major_base=C	major_cov=35/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/34
RA	5287	.	1	1988106	0	T	C	consensus_score=210.3	frequency=1	major_base=C	major_cov=40/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/29
RA	5288	.	1	1988138	0	G	A	consensus_score=180.1	frequency=1	major_base=A	major_cov=39/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/25
RA	5289	.	1	1988142	0	T	C	consensus_score=185.9	frequency=1	major_base=C	major_cov=38/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/24
RA	5290	.	1	1988169	0	T	C	consensus_score=175.5	frequency=1	major_base=C	major_cov=38/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/22
RA	5291	.	1	1988247	0	G	A	consensus_score=177.3	frequency=1	major_base=A	major_cov=45/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/19
RA	5292	.	1	1988268	0	G	A	consensus_score=185.8	frequency=1	major_base=A	major_cov=50/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/17
RA	5293	.	1	1988307	0	T	C	consensus_score=153.8	frequency=1	major_base=C	major_cov=37/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/18
RA	5294	.	1	1988312	0	T	C	consensus_score=159.5	frequency=1	major_base=C	major_cov=37/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/18
RA	5295	.	1	1988379	0	A	C	consensus_score=158.9	frequency=1	major_base=C	major_cov=31/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/22
RA	5296	.	1	1988424	0	T	C	bias_e_value=2120200	bias_p_value=1	consensus_score=142.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=22/25	major_frequency=9.792e-01	minor_base=A	minor_cov=0/1	new_cov=22/25	polymorphism_frequency=9.792e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/26
RA	5297	.	1	1988439	0	T	G	consensus_score=124.3	frequency=1	major_base=G	major_cov=17/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/25
RA	5298	.	1	1988464	0	G	A	consensus_score=113.5	frequency=1	major_base=A	major_cov=19/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/22
RA	5299	.	1	1988484	0	C	T	consensus_score=119.0	frequency=1	major_base=T	major_cov=17/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/27
RA	5300	.	1	1988490	0	G	A	consensus_score=120.5	frequency=1	major_base=A	major_cov=18/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/26
RA	5301	.	1	1988495	0	C	T	consensus_score=126.1	frequency=1	major_base=T	major_cov=18/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/28
RA	5302	.	1	1988507	0	C	T	consensus_score=122.0	frequency=1	major_base=T	major_cov=18/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/27
RA	5303	.	1	1988517	0	C	T	consensus_score=118.2	frequency=1	major_base=T	major_cov=18/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/26
RA	5304	.	1	1988533	0	T	C	consensus_score=134.2	frequency=1	major_base=C	major_cov=16/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/28
RA	5305	.	1	1988604	0	C	A	consensus_score=120.1	frequency=1	major_base=A	major_cov=21/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/23
RA	5306	.	1	1988655	0	G	A	consensus_score=150.8	frequency=1	major_base=A	major_cov=29/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/25
RA	5307	.	1	1988711	0	G	A	consensus_score=178.8	frequency=1	major_base=A	major_cov=36/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/28
RA	5308	.	1	1988716	0	C	T	consensus_score=180.8	frequency=1	major_base=T	major_cov=36/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/28
RA	5309	.	1	1988864	0	A	C	consensus_score=245.0	frequency=1	major_base=C	major_cov=51/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/30
RA	5310	.	1	1988966	0	T	C	consensus_score=214.8	frequency=1	major_base=C	major_cov=41/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/33
RA	5311	.	1	1988999	0	G	A	consensus_score=210.1	frequency=1	major_base=A	major_cov=41/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/33
RA	5312	.	1	1989008	0	C	T	consensus_score=213.8	frequency=1	major_base=T	major_cov=40/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/35
RA	5313	.	1	1989016	0	A	G	consensus_score=225.8	frequency=1	major_base=G	major_cov=39/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/35
RA	5314	.	1	1989187	0	C	T	consensus_score=184.3	frequency=1	major_base=T	major_cov=31/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/35
RA	5315	.	1	1989191	0	T	C	consensus_score=180.0	frequency=1	major_base=C	major_cov=29/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/34
RA	5316	.	1	1989194	0	T	C	consensus_score=176.0	frequency=1	major_base=C	major_cov=29/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/34
RA	5317	.	1	1989200	0	T	C	consensus_score=179.8	frequency=1	major_base=C	major_cov=28/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/36
RA	5318	.	1	1989213	0	C	T	consensus_score=168.5	frequency=1	major_base=T	major_cov=25/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/35
RA	5319	.	1	1989281	0	C	T	consensus_score=163.2	frequency=1	major_base=T	major_cov=28/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/30
RA	5320	.	1	1989293	0	A	C	consensus_score=167.8	frequency=1	major_base=C	major_cov=26/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/31
RA	5321	.	1	1989302	0	A	G	consensus_score=179.2	frequency=1	major_base=G	major_cov=28/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/32
RA	5322	.	1	1989362	0	C	G	consensus_score=183.1	frequency=1	major_base=G	major_cov=32/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/32
RA	5323	.	1	1989371	0	T	C	consensus_score=198.9	frequency=1	major_base=C	major_cov=36/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/31
RA	5324	.	1	1989416	0	G	A	consensus_score=178.8	frequency=1	major_base=A	major_cov=34/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/30
RA	5325	.	1	1989422	0	G	A	consensus_score=174.3	frequency=1	major_base=A	major_cov=34/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/30
RA	5326	.	1	1989427	0	C	T	consensus_score=184.2	frequency=1	major_base=T	major_cov=34/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/29
RA	5327	.	1	1989431	0	A	G	consensus_score=177.9	frequency=1	major_base=G	major_cov=34/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/29
RA	5328	.	1	1989434	0	G	A	consensus_score=188.5	frequency=1	major_base=A	major_cov=34/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/29
RA	5329	.	1	1989440	0	T	C	consensus_score=187.9	frequency=1	major_base=C	major_cov=34/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/29
RA	5330	.	1	1989443	0	A	G	consensus_score=190.8	frequency=1	major_base=G	major_cov=34/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/29
RA	5331	.	1	1989464	0	C	T	consensus_score=169.7	frequency=1	major_base=T	major_cov=32/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/28
RA	5332	.	1	1989467	0	C	T	consensus_score=168.5	frequency=1	major_base=T	major_cov=32/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/28
RA	5333	.	1	1989485	0	A	G	consensus_score=160.5	frequency=1	major_base=G	major_cov=31/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/27
RA	5334	.	1	1989509	0	G	C	consensus_score=146.9	frequency=1	major_base=C	major_cov=24/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/28
RA	5335	.	1	1989512	0	T	C	consensus_score=149.3	frequency=1	major_base=C	major_cov=24/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/28
RA	5336	.	1	1989515	0	C	T	consensus_score=148.7	frequency=1	major_base=T	major_cov=24/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/28
RA	5337	.	1	1989521	0	G	A	consensus_score=141.3	frequency=1	major_base=A	major_cov=24/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/26
RA	5338	.	1	1989536	0	T	A	consensus_score=129.5	frequency=1	major_base=A	major_cov=23/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/25
RA	5339	.	1	1989545	0	A	T	consensus_score=135.1	frequency=1	major_base=T	major_cov=22/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/26
RA	5340	.	1	1989557	0	G	A	consensus_score=114.2	frequency=1	major_base=A	major_cov=21/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/20
RA	5341	.	1	1989578	0	A	G	consensus_score=122.1	frequency=1	major_base=G	major_cov=17/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/25
RA	5342	.	1	1989581	0	G	A	consensus_score=120.1	frequency=1	major_base=A	major_cov=17/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/25
RA	5343	.	1	1989584	0	A	G	consensus_score=118.2	frequency=1	major_base=G	major_cov=17/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/25
RA	5344	.	1	1989590	0	A	G	consensus_score=116.7	frequency=1	major_base=G	major_cov=16/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/25
RA	5345	.	1	1989599	0	G	A	consensus_score=79.0	frequency=1	major_base=A	major_cov=6/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/23
RA	5346	.	1	1989602	0	C	T	consensus_score=75.8	frequency=1	major_base=T	major_cov=6/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/23
RA	5347	.	1	1989605	0	A	G	consensus_score=79.6	frequency=1	major_base=G	major_cov=6/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/23
RA	5348	.	1	1989608	0	A	G	consensus_score=82.5	frequency=1	major_base=G	major_cov=6/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/23
RA	5349	.	1	1989611	0	A	G	consensus_score=83.4	frequency=1	major_base=G	major_cov=6/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/23
RA	5350	.	1	1989616	0	G	T	consensus_score=77.9	frequency=1	major_base=T	major_cov=6/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/23
RA	5351	.	1	1989617	0	G	T	consensus_score=84.3	frequency=1	major_base=T	major_cov=6/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/23
RA	5352	.	1	1989620	0	G	T	consensus_score=75.4	frequency=1	major_base=T	major_cov=6/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/23
RA	5353	.	1	1989626	0	A	G	consensus_score=84.4	frequency=1	major_base=G	major_cov=6/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/23
RA	5354	.	1	1989629	0	T	C	consensus_score=86.9	frequency=1	major_base=C	major_cov=6/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/23
RA	5355	.	1	1989632	0	G	A	consensus_score=78.7	frequency=1	major_base=A	major_cov=6/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/23
RA	5356	.	1	1989638	0	C	A	consensus_score=100.6	frequency=1	major_base=A	major_cov=9/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/28
RA	5357	.	1	1989647	0	G	T	consensus_score=104.2	frequency=1	major_base=T	major_cov=10/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/29
RA	5358	.	1	1989653	0	C	T	consensus_score=115.1	frequency=1	major_base=T	major_cov=10/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/29
RA	5359	.	1	1989656	0	A	G	consensus_score=109.4	frequency=1	major_base=G	major_cov=10/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/29
RA	5360	.	1	1989659	0	A	G	consensus_score=112.1	frequency=1	major_base=G	major_cov=10/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/29
RA	5361	.	1	1989665	0	G	A	consensus_score=107.2	frequency=1	major_base=A	major_cov=10/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/29
RA	5362	.	1	1989685	0	A	C	consensus_score=142.1	frequency=1	major_base=C	major_cov=17/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/30
RA	5363	.	1	1989692	0	G	A	consensus_score=141.8	frequency=1	major_base=A	major_cov=17/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/34
RA	5364	.	1	1989723	0	T	C	consensus_score=148.6	frequency=1	major_base=C	major_cov=16/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/33
RA	5365	.	1	1989737	0	T	A	consensus_score=125.6	frequency=1	major_base=A	major_cov=19/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/26
RA	5366	.	1	1989739	0	T	G	consensus_score=129.9	frequency=1	major_base=G	major_cov=19/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/26
RA	5367	.	1	1989743	0	A	C	consensus_score=125.5	frequency=1	major_base=C	major_cov=19/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/26
RA	5368	.	1	1989748	0	G	A	consensus_score=130.3	frequency=1	major_base=A	major_cov=19/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/26
RA	5369	.	1	1989750	0	G	T	consensus_score=120.7	frequency=1	major_base=T	major_cov=19/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/26
RA	5370	.	1	1989752	0	G	A	consensus_score=123.3	frequency=1	major_base=A	major_cov=19/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/26
RA	5371	.	1	1990251	0	G	C	consensus_score=126.3	frequency=1	major_base=C	major_cov=21/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/22
RA	5372	.	1	1992197	0	G	A	consensus_score=201.7	frequency=1	major_base=A	major_cov=27/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/44
RA	5373	.	1	1993956	0	C	G	bias_e_value=752857	bias_p_value=0.355089	consensus_score=150.6	fisher_strand_p_value=0.111039	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=37/17	major_frequency=9.643e-01	minor_base=C	minor_cov=0/2	new_cov=37/17	polymorphism_frequency=9.643e-01	polymorphism_score=-5.9	prediction=consensus	ref_cov=0/2	total_cov=37/19
RA	5374	.	1	1994241	0	G	A	consensus_score=181.8	frequency=1	major_base=A	major_cov=26/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/36
RA	5375	.	1	1994351	0	G	T	consensus_score=160.1	frequency=1	major_base=T	major_cov=25/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/30
RA	5376	.	1	1994424	0	C	A	bias_e_value=1664420	bias_p_value=0.785034	consensus_score=164.0	fisher_strand_p_value=0.421053	frequency=1	ks_quality_p_value=0.999374	major_base=A	major_cov=23/33	major_frequency=9.825e-01	minor_base=C	minor_cov=1/0	new_cov=23/33	polymorphism_frequency=9.825e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=24/33
RA	5377	.	1	1994638	0	T	C	consensus_score=182.7	frequency=1	major_base=C	major_cov=33/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/29
RA	5378	.	1	1994807	0	G	A	consensus_score=194.9	frequency=1	major_base=A	major_cov=35/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/31
RA	5379	.	1	1994993	1	.	T	consensus_score=225.1	frequency=1	major_base=T	major_cov=41/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/35
RA	5380	.	1	1995223	0	A	G	consensus_score=230.9	frequency=1	major_base=G	major_cov=38/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/39
RA	5381	.	1	1995272	0	T	C	consensus_score=194.3	frequency=1	major_base=C	major_cov=30/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/35
RA	5382	.	1	1995284	0	G	T	consensus_score=195.4	frequency=1	major_base=T	major_cov=32/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/35
RA	5383	.	1	1995308	0	T	C	consensus_score=178.4	frequency=1	major_base=C	major_cov=29/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/33
RA	5384	.	1	1995341	0	C	T	consensus_score=197.7	frequency=1	major_base=T	major_cov=30/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/41
RA	5385	.	1	1995375	0	T	C	consensus_score=194.6	frequency=1	major_base=C	major_cov=30/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/38
RA	5386	.	1	1995431	0	T	C	consensus_score=199.2	frequency=1	major_base=C	major_cov=27/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/39
RA	5387	.	1	1995464	0	G	A	consensus_score=184.6	frequency=1	major_base=A	major_cov=25/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/40
RA	5388	.	1	1995575	0	C	T	consensus_score=209.1	frequency=1	major_base=T	major_cov=39/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/32
RA	5389	.	1	1995577	0	T	C	consensus_score=208.2	frequency=1	major_base=C	major_cov=39/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/32
RA	5390	.	1	1995588	0	A	T	consensus_score=219.5	frequency=1	major_base=T	major_cov=44/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/33
RA	5391	.	1	1995762	0	A	G	bias_e_value=576947	bias_p_value=0.27212	consensus_score=197.9	fisher_strand_p_value=0.083685	frequency=1	ks_quality_p_value=0.909403	major_base=G	major_cov=33/45	major_frequency=9.630e-01	minor_base=C	minor_cov=3/0	new_cov=33/45	polymorphism_frequency=9.630e-01	polymorphism_score=-5.3	prediction=consensus	ref_cov=0/0	total_cov=36/45
RA	5392	.	1	1995771	0	C	A	consensus_score=229.6	frequency=1	major_base=A	major_cov=32/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/47
RA	5393	.	1	1995795	0	A	G	consensus_score=216.6	frequency=1	major_base=G	major_cov=32/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/45
RA	5394	.	1	1995822	0	A	G	bias_e_value=1725810	bias_p_value=0.813987	consensus_score=173.1	fisher_strand_p_value=0.455882	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=30/37	major_frequency=9.853e-01	minor_base=A	minor_cov=1/0	new_cov=30/37	polymorphism_frequency=9.853e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=31/37
RA	5395	.	1	1995837	0	T	C	consensus_score=179.1	frequency=1	major_base=C	major_cov=30/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/33
RA	5396	.	1	1995840	0	T	G	consensus_score=178.5	frequency=1	major_base=G	major_cov=30/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/33
RA	5397	.	1	1995843	0	C	T	bias_e_value=397880	bias_p_value=0.187662	consensus_score=146.7	fisher_strand_p_value=0.0460074	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=26/33	major_frequency=9.365e-01	minor_base=C	minor_cov=4/0	new_cov=26/33	polymorphism_frequency=9.365e-01	polymorphism_score=-5.8	prediction=consensus	ref_cov=4/0	total_cov=30/33
RA	5398	.	1	1995846	0	T	C	consensus_score=165.9	frequency=1	major_base=C	major_cov=30/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/33
RA	5399	.	1	1995848	0	G	A	bias_e_value=1758690	bias_p_value=0.829494	consensus_score=174.6	fisher_strand_p_value=0.47619	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=29/33	major_frequency=9.841e-01	minor_base=G	minor_cov=1/0	new_cov=29/33	polymorphism_frequency=9.841e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=30/33
RA	5400	.	1	1995894	0	A	G	consensus_score=199.9	frequency=1	major_base=G	major_cov=39/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/34
RA	5401	.	1	1995903	0	T	C	consensus_score=220.9	frequency=1	major_base=C	major_cov=42/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/35
RA	5402	.	1	1995934	0	C	T	consensus_score=189.3	frequency=1	major_base=T	major_cov=37/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/32
RA	5403	.	1	1995951	0	G	A	bias_e_value=1717910	bias_p_value=0.810259	consensus_score=177.5	fisher_strand_p_value=0.454545	frequency=1	ks_quality_p_value=0.992569	major_base=A	major_cov=36/29	major_frequency=9.848e-01	minor_base=G	minor_cov=0/1	new_cov=36/29	polymorphism_frequency=9.848e-01	polymorphism_score=-4.8	prediction=consensus	ref_cov=0/1	total_cov=37/30
RA	5404	.	1	1995957	0	T	C	bias_e_value=1652940	bias_p_value=0.779619	consensus_score=181.8	fisher_strand_p_value=0.415385	frequency=1	ks_quality_p_value=0.998079	major_base=C	major_cov=38/26	major_frequency=9.846e-01	minor_base=T	minor_cov=0/1	new_cov=38/26	polymorphism_frequency=9.846e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=0/1	total_cov=38/27
RA	5405	.	1	1995960	0	C	T	bias_e_value=2120190	bias_p_value=1	consensus_score=176.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=36/26	major_frequency=9.538e-01	minor_base=C	minor_cov=2/1	new_cov=36/26	polymorphism_frequency=9.538e-01	polymorphism_score=NA	prediction=consensus	ref_cov=2/1	total_cov=38/27
RA	5406	.	1	1995985	0	C	T	consensus_score=189.6	frequency=1	major_base=T	major_cov=39/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/26
RA	5407	.	1	1995990	0	T	C	bias_e_value=1606840	bias_p_value=0.757874	consensus_score=180.1	fisher_strand_p_value=0.4	frequency=1	ks_quality_p_value=0.976718	major_base=C	major_cov=39/25	major_frequency=9.846e-01	minor_base=T	minor_cov=0/1	new_cov=39/25	polymorphism_frequency=9.846e-01	polymorphism_score=-4.7	prediction=consensus	ref_cov=0/1	total_cov=39/26
RA	5408	.	1	1996038	0	T	C	bias_e_value=1624840	bias_p_value=0.766365	consensus_score=198.7	fisher_strand_p_value=0.4	frequency=1	ks_quality_p_value=0.999586	major_base=C	major_cov=42/27	major_frequency=9.857e-01	minor_base=T	minor_cov=0/1	new_cov=42/27	polymorphism_frequency=9.857e-01	polymorphism_score=-4.9	prediction=consensus	ref_cov=0/1	total_cov=42/28
RA	5409	.	1	1996088	0	T	G	bias_e_value=1513680	bias_p_value=0.713936	consensus_score=199.2	fisher_strand_p_value=0.347222	frequency=1	ks_quality_p_value=0.998436	major_base=G	major_cov=47/24	major_frequency=9.861e-01	minor_base=T	minor_cov=0/1	new_cov=47/24	polymorphism_frequency=9.861e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=47/25
RA	5410	.	1	1996092	0	T	C	bias_e_value=1510030	bias_p_value=0.712212	consensus_score=201.8	fisher_strand_p_value=0.347222	frequency=1	ks_quality_p_value=0.99376	major_base=C	major_cov=47/24	major_frequency=9.861e-01	minor_base=T	minor_cov=0/1	new_cov=47/24	polymorphism_frequency=9.861e-01	polymorphism_score=-4.6	prediction=consensus	ref_cov=0/1	total_cov=47/25
RA	5411	.	1	1996094	0	G	A	bias_e_value=1437230	bias_p_value=0.677877	consensus_score=206.0	fisher_strand_p_value=0.347222	frequency=1	ks_quality_p_value=0.904696	major_base=A	major_cov=47/24	major_frequency=9.861e-01	minor_base=G	minor_cov=0/1	new_cov=47/24	polymorphism_frequency=9.861e-01	polymorphism_score=-4.8	prediction=consensus	ref_cov=0/1	total_cov=47/25
RA	5412	.	1	1996149	0	C	T	bias_e_value=1619820	bias_p_value=0.763997	consensus_score=201.2	fisher_strand_p_value=0.39726	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=44/28	major_frequency=9.863e-01	minor_base=C	minor_cov=0/1	new_cov=44/28	polymorphism_frequency=9.863e-01	polymorphism_score=-5.8	prediction=consensus	ref_cov=0/1	total_cov=44/29
RA	5413	.	1	1996173	0	G	A	bias_e_value=1466140	bias_p_value=0.691514	consensus_score=202.9	fisher_strand_p_value=0.342857	frequency=1	ks_quality_p_value=0.951131	major_base=A	major_cov=46/23	major_frequency=9.857e-01	minor_base=G	minor_cov=0/1	new_cov=46/23	polymorphism_frequency=9.857e-01	polymorphism_score=-4.8	prediction=consensus	ref_cov=0/1	total_cov=46/24
RA	5414	.	1	1996236	0	G	A	consensus_score=159.4	frequency=1	major_base=A	major_cov=33/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/22
RA	5415	.	1	1996239	0	G	A	consensus_score=153.3	frequency=1	major_base=A	major_cov=33/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/22
RA	5416	.	1	1996260	0	C	T	consensus_score=148.9	frequency=1	major_base=T	major_cov=32/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/23
RA	5417	.	1	1996266	0	C	T	consensus_score=153.7	frequency=1	major_base=T	major_cov=32/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/23
RA	5418	.	1	1996272	0	C	T	consensus_score=159.3	frequency=1	major_base=T	major_cov=32/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/23
RA	5419	.	1	1996281	0	G	A	consensus_score=159.2	frequency=1	major_base=A	major_cov=32/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/23
RA	5420	.	1	1996407	0	A	G	consensus_score=155.6	frequency=1	major_base=G	major_cov=20/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/35
RA	5421	.	1	1996415	0	T	G	consensus_score=152.0	frequency=1	major_base=G	major_cov=19/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/35
RA	5422	.	1	1996422	0	A	G	consensus_score=161.4	frequency=1	major_base=G	major_cov=20/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/36
RA	5423	.	1	1996464	0	A	G	consensus_score=168.7	frequency=1	major_base=G	major_cov=25/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/33
RA	5424	.	1	1996491	0	G	A	consensus_score=165.3	frequency=1	major_base=A	major_cov=24/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/35
RA	5425	.	1	1996495	0	G	A	consensus_score=153.7	frequency=1	major_base=A	major_cov=24/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/33
RA	5426	.	1	1996498	0	G	A	bias_e_value=1800400	bias_p_value=0.849165	consensus_score=150.3	fisher_strand_p_value=0.503759	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=24/31	major_frequency=9.649e-01	minor_base=C	minor_cov=0/2	new_cov=24/31	polymorphism_frequency=9.649e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/33
RA	5427	.	1	1996504	0	C	G	consensus_score=171.3	frequency=1	major_base=G	major_cov=22/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/37
RA	5428	.	1	1996515	0	G	A	consensus_score=163.7	frequency=1	major_base=A	major_cov=22/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/36
RA	5429	.	1	1996648	0	A	G	consensus_score=221.6	frequency=1	major_base=G	major_cov=41/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/37
RA	5430	.	1	1996754	0	T	C	consensus_score=228.3	frequency=1	major_base=C	major_cov=44/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/37
RA	5431	.	1	1996764	0	A	G	consensus_score=222.8	frequency=1	major_base=G	major_cov=43/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/36
RA	5432	.	1	1996816	0	A	G	consensus_score=178.2	frequency=1	major_base=G	major_cov=31/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/32
RA	5433	.	1	1996817	0	T	C	consensus_score=178.4	frequency=1	major_base=C	major_cov=31/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/32
RA	5434	.	1	1996818	0	A	G	consensus_score=184.6	frequency=1	major_base=G	major_cov=31/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/32
RA	5435	.	1	1996824	0	T	C	consensus_score=201.3	frequency=1	major_base=C	major_cov=34/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/33
RA	5436	.	1	1996834	0	A	G	consensus_score=204.7	frequency=1	major_base=G	major_cov=37/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/33
RA	5437	.	1	1996835	0	G	C	consensus_score=208.0	frequency=1	major_base=C	major_cov=37/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/33
RA	5438	.	1	1996941	0	T	C	consensus_score=212.4	frequency=1	major_base=C	major_cov=36/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/36
RA	5439	.	1	1997161	0	G	A	consensus_score=225.3	frequency=1	major_base=A	major_cov=32/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/44
RA	5440	.	1	1997181	0	G	A	bias_e_value=2120200	bias_p_value=1	consensus_score=219.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=36/42	major_frequency=9.873e-01	minor_base=G	minor_cov=0/1	new_cov=36/42	polymorphism_frequency=9.873e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=36/43
RA	5441	.	1	1997200	0	A	G	consensus_score=235.4	frequency=1	major_base=G	major_cov=38/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/43
RA	5442	.	1	1997209	0	C	T	consensus_score=218.1	frequency=1	major_base=T	major_cov=39/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/38
RA	5443	.	1	1997247	0	T	C	consensus_score=238.5	frequency=1	major_base=C	major_cov=39/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/40
RA	5444	.	1	1997253	0	C	T	consensus_score=222.9	frequency=1	major_base=T	major_cov=39/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/39
RA	5445	.	1	1997262	0	G	A	consensus_score=241.6	frequency=1	major_base=A	major_cov=42/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/41
RA	5446	.	1	1997299	0	G	T	consensus_score=205.7	frequency=1	major_base=T	major_cov=42/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/30
RA	5447	.	1	1997311	0	C	A	consensus_score=185.4	frequency=1	major_base=A	major_cov=36/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/27
RA	5448	.	1	1997313	0	G	A	consensus_score=177.7	frequency=1	major_base=A	major_cov=36/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/27
RA	5449	.	1	1997319	0	A	G	bias_e_value=2120190	bias_p_value=0.999996	consensus_score=150.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.99731	major_base=G	major_cov=30/24	major_frequency=9.818e-01	minor_base=.	minor_cov=1/0	new_cov=30/24	polymorphism_frequency=9.818e-01	polymorphism_score=-3.9	prediction=consensus	ref_cov=0/0	total_cov=31/24
RA	5450	.	1	1997320	0	T	C	bias_e_value=2120200	bias_p_value=1	consensus_score=144.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=30/24	major_frequency=9.818e-01	minor_base=G	minor_cov=1/0	new_cov=30/24	polymorphism_frequency=9.818e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/24
RA	5451	.	1	1997321	0	T	G	bias_e_value=2120190	bias_p_value=1	consensus_score=151.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999327	major_base=G	major_cov=30/24	major_frequency=9.818e-01	minor_base=C	minor_cov=1/0	new_cov=30/24	polymorphism_frequency=9.818e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=0/0	total_cov=31/24
RA	5452	.	1	1997325	0	G	A	bias_e_value=2084890	bias_p_value=0.983349	consensus_score=146.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.823153	major_base=A	major_cov=30/24	major_frequency=9.818e-01	minor_base=G	minor_cov=1/0	new_cov=30/24	polymorphism_frequency=9.818e-01	polymorphism_score=-5.2	prediction=consensus	ref_cov=1/0	total_cov=31/24
RA	5453	.	1	1997326	0	C	T	bias_e_value=2120200	bias_p_value=1	consensus_score=147.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=30/24	major_frequency=9.818e-01	minor_base=C	minor_cov=1/0	new_cov=30/24	polymorphism_frequency=9.818e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=31/24
RA	5454	.	1	1997337	0	C	T	consensus_score=162.6	frequency=1	major_base=T	major_cov=34/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/29
RA	5455	.	1	1997345	0	G	C	consensus_score=172.1	frequency=1	major_base=C	major_cov=35/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/27
RA	5456	.	1	1997358	0	A	G	consensus_score=164.6	frequency=1	major_base=G	major_cov=32/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/27
RA	5457	.	1	1997361	0	A	G	consensus_score=164.6	frequency=1	major_base=G	major_cov=32/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/27
RA	5458	.	1	1997374	0	A	G	bias_e_value=1734010	bias_p_value=0.817854	consensus_score=165.6	fisher_strand_p_value=0.47619	frequency=1	ks_quality_p_value=0.967761	major_base=G	major_cov=33/29	major_frequency=9.841e-01	minor_base=A	minor_cov=0/1	new_cov=33/29	polymorphism_frequency=9.841e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=33/30
RA	5459	.	1	1997380	0	C	T	consensus_score=174.9	frequency=1	major_base=T	major_cov=32/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/30
RA	5460	.	1	1997423	0	A	T	consensus_score=150.0	frequency=1	major_base=T	major_cov=25/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/29
RA	5461	.	1	1997424	0	A	G	consensus_score=154.2	frequency=1	major_base=G	major_cov=25/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/29
RA	5462	.	1	1997427	0	G	A	consensus_score=143.8	frequency=1	major_base=A	major_cov=25/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/29
RA	5463	.	1	1997454	0	G	A	consensus_score=157.3	frequency=1	major_base=A	major_cov=24/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/33
RA	5464	.	1	1997485	0	C	G	consensus_score=174.1	frequency=1	major_base=G	major_cov=26/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/36
RA	5465	.	1	1997567	0	C	T	consensus_score=181.1	frequency=1	major_base=T	major_cov=30/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/35
RA	5466	.	1	1997633	0	T	G	consensus_score=170.4	frequency=1	major_base=G	major_cov=30/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/30
RA	5467	.	1	1997671	0	T	C	consensus_score=170.0	frequency=1	major_base=C	major_cov=28/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/30
RA	5468	.	1	1997710	0	T	C	consensus_score=196.3	frequency=1	major_base=C	major_cov=31/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/35
RA	5469	.	1	1997737	0	A	G	consensus_score=206.4	frequency=1	major_base=G	major_cov=34/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/35
RA	5470	.	1	1997770	0	C	T	consensus_score=194.9	frequency=1	major_base=T	major_cov=31/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/37
RA	5471	.	1	1997771	0	C	A	consensus_score=192.9	frequency=1	major_base=A	major_cov=31/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/37
RA	5472	.	1	1997819	0	C	T	consensus_score=213.7	frequency=1	major_base=T	major_cov=31/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/45
RA	5473	.	1	1997822	0	T	C	consensus_score=228.5	frequency=1	major_base=C	major_cov=31/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/45
RA	5474	.	1	1997918	0	C	T	consensus_score=223.8	frequency=1	major_base=T	major_cov=35/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/44
RA	5475	.	1	1997939	0	A	G	consensus_score=224.7	frequency=1	major_base=G	major_cov=33/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/42
RA	5476	.	1	1997957	0	A	G	consensus_score=192.0	frequency=1	major_base=G	major_cov=31/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/32
RA	5477	.	1	1998013	0	G	A	consensus_score=155.7	frequency=1	major_base=A	major_cov=33/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/23
RA	5478	.	1	1998017	0	A	T	consensus_score=151.7	frequency=1	major_base=T	major_cov=31/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/23
RA	5479	.	1	1998054	0	G	A	consensus_score=178.2	frequency=1	major_base=A	major_cov=41/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/23
RA	5480	.	1	1998070	0	C	A	consensus_score=168.5	frequency=1	major_base=A	major_cov=39/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/21
RA	5481	.	1	1998110	0	C	A	consensus_score=182.0	frequency=1	major_base=A	major_cov=39/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/22
RA	5482	.	1	1998119	0	G	A	consensus_score=160.1	frequency=1	major_base=A	major_cov=37/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/20
RA	5483	.	1	1998233	0	C	T	consensus_score=160.5	frequency=1	major_base=T	major_cov=33/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/25
RA	5484	.	1	1998239	0	C	T	consensus_score=151.3	frequency=1	major_base=T	major_cov=31/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/24
RA	5485	.	1	1998241	0	C	A	consensus_score=154.7	frequency=1	major_base=A	major_cov=31/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/24
RA	5486	.	1	1998299	0	G	A	consensus_score=179.3	frequency=1	major_base=A	major_cov=30/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/32
RA	5487	.	1	1998401	0	A	G	consensus_score=200.5	frequency=1	major_base=G	major_cov=35/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/35
RA	5488	.	1	1998407	0	A	T	consensus_score=184.4	frequency=1	major_base=T	major_cov=33/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/33
RA	5489	.	1	1998409	0	T	C	consensus_score=189.7	frequency=1	major_base=C	major_cov=33/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/33
RA	5490	.	1	1998427	0	T	C	consensus_score=210.1	frequency=1	major_base=C	major_cov=35/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/37
RA	5491	.	1	1998465	0	A	G	consensus_score=232.9	frequency=1	major_base=G	major_cov=41/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/37
RA	5492	.	1	1998485	0	T	C	consensus_score=220.7	frequency=1	major_base=C	major_cov=40/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/37
RA	5493	.	1	1998520	0	A	G	consensus_score=209.9	frequency=1	major_base=G	major_cov=44/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/30
RA	5494	.	1	1998542	0	A	G	consensus_score=224.9	frequency=1	major_base=G	major_cov=44/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/35
RA	5495	.	1	1998552	0	A	G	consensus_score=211.8	frequency=1	major_base=G	major_cov=39/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/32
RA	5496	.	1	1998554	0	G	C	consensus_score=202.5	frequency=1	major_base=C	major_cov=39/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/32
RA	5497	.	1	1998604	0	A	C	consensus_score=234.1	frequency=1	major_base=C	major_cov=46/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/37
RA	5498	.	1	1998617	0	C	T	bias_e_value=1660400	bias_p_value=0.783137	consensus_score=251.5	fisher_strand_p_value=0.418605	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=50/35	major_frequency=9.884e-01	minor_base=C	minor_cov=0/1	new_cov=50/35	polymorphism_frequency=9.884e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=50/36
RA	5499	.	1	1998646	0	G	A	consensus_score=229.3	frequency=1	major_base=A	major_cov=48/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/33
RA	5500	.	1	1998677	0	C	T	consensus_score=220.3	frequency=1	major_base=T	major_cov=48/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/30
RA	5501	.	1	1998692	0	A	G	consensus_score=198.7	frequency=1	major_base=G	major_cov=40/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/30
RA	5502	.	1	1998695	0	A	G	bias_e_value=2120200	bias_p_value=1	consensus_score=197.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=39/30	major_frequency=9.857e-01	minor_base=C	minor_cov=1/0	new_cov=39/30	polymorphism_frequency=9.857e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/30
RA	5503	.	1	1998701	0	A	T	consensus_score=207.2	frequency=1	major_base=T	major_cov=42/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/31
RA	5504	.	1	1998773	0	G	A	consensus_score=175.5	frequency=1	major_base=A	major_cov=39/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/24
RA	5505	.	1	1998797	0	G	A	consensus_score=178.6	frequency=1	major_base=A	major_cov=39/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/25
RA	5506	.	1	1998800	0	G	A	consensus_score=188.5	frequency=1	major_base=A	major_cov=39/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/25
RA	5507	.	1	1998839	0	G	A	consensus_score=191.2	frequency=1	major_base=A	major_cov=34/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/33
RA	5508	.	1	1998878	0	C	T	consensus_score=199.2	frequency=1	major_base=T	major_cov=34/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/36
RA	5509	.	1	1998882	0	T	C	consensus_score=210.1	frequency=1	major_base=C	major_cov=34/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/36
RA	5510	.	1	1998893	0	G	A	consensus_score=209.6	frequency=1	major_base=A	major_cov=34/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/39
RA	5511	.	1	1998907	0	A	G	consensus_score=209.9	frequency=1	major_base=G	major_cov=32/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/40
RA	5512	.	1	1998944	0	A	G	consensus_score=189.0	frequency=1	major_base=G	major_cov=24/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/41
RA	5513	.	1	1998947	0	A	G	consensus_score=191.6	frequency=1	major_base=G	major_cov=24/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/41
RA	5514	.	1	1998950	0	G	A	consensus_score=187.2	frequency=1	major_base=A	major_cov=24/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/41
RA	5515	.	1	1998974	0	A	G	consensus_score=186.7	frequency=1	major_base=G	major_cov=18/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/46
RA	5516	.	1	1998986	0	C	T	consensus_score=184.4	frequency=1	major_base=T	major_cov=20/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/45
RA	5517	.	1	1999014	0	C	T	consensus_score=169.5	frequency=1	major_base=T	major_cov=18/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/43
RA	5518	.	1	1999049	0	T	C	consensus_score=178.6	frequency=1	major_base=C	major_cov=20/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/40
RA	5519	.	1	1999050	0	C	T	consensus_score=167.2	frequency=1	major_base=T	major_cov=20/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/40
RA	5520	.	1	1999055	0	T	C	consensus_score=186.2	frequency=1	major_base=C	major_cov=21/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/42
RA	5521	.	1	1999096	0	A	T	consensus_score=214.6	frequency=1	major_base=T	major_cov=26/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/46
RA	5522	.	1	1999099	0	A	C	consensus_score=204.7	frequency=1	major_base=C	major_cov=26/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/46
RA	5523	.	1	1999102	0	C	A	consensus_score=212.2	frequency=1	major_base=A	major_cov=26/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/46
RA	5524	.	1	1999150	0	C	T	consensus_score=196.2	frequency=1	major_base=T	major_cov=30/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/39
RA	5525	.	1	1999161	0	T	C	consensus_score=187.3	frequency=1	major_base=C	major_cov=30/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/34
RA	5526	.	1	1999181	0	G	A	consensus_score=181.5	frequency=1	major_base=A	major_cov=32/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/32
RA	5527	.	1	1999184	0	G	A	consensus_score=183.0	frequency=1	major_base=A	major_cov=32/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/32
RA	5528	.	1	1999193	0	C	T	consensus_score=190.2	frequency=1	major_base=T	major_cov=32/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/35
RA	5529	.	1	1999217	0	T	C	bias_e_value=2097530	bias_p_value=0.989308	consensus_score=187.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.857376	major_base=C	major_cov=34/34	major_frequency=9.855e-01	minor_base=.	minor_cov=1/0	new_cov=34/34	polymorphism_frequency=9.855e-01	polymorphism_score=-2.9	prediction=consensus	ref_cov=0/0	total_cov=35/34
RA	5530	.	1	1999223	0	T	C	consensus_score=193.2	frequency=1	major_base=C	major_cov=34/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/34
RA	5531	.	1	1999232	0	C	T	consensus_score=188.5	frequency=1	major_base=T	major_cov=34/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/33
RA	5532	.	1	1999235	0	A	G	consensus_score=194.1	frequency=1	major_base=G	major_cov=34/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/33
RA	5533	.	1	1999262	0	A	G	consensus_score=213.6	frequency=1	major_base=G	major_cov=36/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/36
RA	5534	.	1	1999265	0	C	T	consensus_score=202.7	frequency=1	major_base=T	major_cov=36/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/36
RA	5535	.	1	1999286	0	G	A	consensus_score=202.2	frequency=1	major_base=A	major_cov=34/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/40
RA	5536	.	1	1999298	0	A	G	consensus_score=209.7	frequency=1	major_base=G	major_cov=34/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/37
RA	5537	.	1	1999304	0	T	C	consensus_score=199.7	frequency=1	major_base=C	major_cov=35/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/33
RA	5538	.	1	1999322	0	G	C	bias_e_value=2120200	bias_p_value=1	consensus_score=176.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=30/32	major_frequency=9.841e-01	minor_base=T	minor_cov=0/1	new_cov=30/32	polymorphism_frequency=9.841e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/33
RA	5539	.	1	1999325	0	T	C	consensus_score=178.3	frequency=1	major_base=C	major_cov=30/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/33
RA	5540	.	1	1999352	0	C	T	consensus_score=210.3	frequency=1	major_base=T	major_cov=40/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/31
RA	5541	.	1	1999355	0	A	G	consensus_score=202.3	frequency=1	major_base=G	major_cov=40/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/31
RA	5542	.	1	1999403	0	A	G	consensus_score=247.1	frequency=1	major_base=G	major_cov=45/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/42
RA	5543	.	1	1999484	0	G	T	consensus_score=234.3	frequency=1	major_base=T	major_cov=47/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/35
RA	5544	.	1	1999541	0	A	G	consensus_score=194.2	frequency=1	major_base=G	major_cov=36/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/31
RA	5545	.	1	1999613	0	C	T	consensus_score=183.2	frequency=1	major_base=T	major_cov=25/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/39
RA	5546	.	1	1999616	0	G	A	consensus_score=182.6	frequency=1	major_base=A	major_cov=25/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/39
RA	5547	.	1	1999628	0	G	C	consensus_score=181.8	frequency=1	major_base=C	major_cov=26/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/37
RA	5548	.	1	1999631	0	C	T	consensus_score=179.9	frequency=1	major_base=T	major_cov=26/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/37
RA	5549	.	1	1999685	0	A	.	consensus_score=293.4	frequency=1	major_base=.	major_cov=28/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/42
RA	5550	.	1	1999688	0	A	G	consensus_score=204.3	frequency=1	major_base=G	major_cov=28/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/42
RA	5551	.	1	1999691	1	.	T	bias_e_value=2120190	bias_p_value=0.999999	consensus_score=194.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998345	major_base=T	major_cov=28/41	major_frequency=9.857e-01	minor_base=.	minor_cov=0/1	new_cov=28/41	polymorphism_frequency=9.857e-01	polymorphism_score=-3.0	prediction=consensus	ref_cov=0/1	total_cov=28/42
RA	5552	.	1	1999699	0	G	A	consensus_score=198.0	frequency=1	major_base=A	major_cov=27/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/43
RA	5553	.	1	1999706	0	C	T	consensus_score=194.3	frequency=1	major_base=T	major_cov=27/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/43
RA	5554	.	1	1999763	0	A	G	consensus_score=251.0	frequency=1	major_base=G	major_cov=31/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/52
RA	5555	.	1	1999804	0	T	A	consensus_score=234.3	frequency=1	major_base=A	major_cov=35/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/51
RA	5556	.	1	1999808	0	G	A	consensus_score=238.9	frequency=1	major_base=A	major_cov=35/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/51
RA	5557	.	1	1999814	0	T	A	bias_e_value=993094	bias_p_value=0.468397	consensus_score=219.4	fisher_strand_p_value=0.168404	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=34/51	major_frequency=9.770e-01	minor_base=G	minor_cov=2/0	new_cov=34/51	polymorphism_frequency=9.770e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/51
RA	5558	.	1	1999832	0	A	G	consensus_score=241.1	frequency=1	major_base=G	major_cov=37/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/48
RA	5559	.	1	1999841	0	C	T	consensus_score=233.1	frequency=1	major_base=T	major_cov=37/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/45
RA	5560	.	1	1999863	0	A	G	consensus_score=210.5	frequency=1	major_base=G	major_cov=34/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/40
RA	5561	.	1	1999880	0	G	A	consensus_score=195.8	frequency=1	major_base=A	major_cov=31/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/39
RA	5562	.	1	1999886	0	G	A	consensus_score=199.0	frequency=1	major_base=A	major_cov=32/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/40
RA	5563	.	1	2000256	0	T	C	consensus_score=175.1	frequency=1	major_base=C	major_cov=30/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/31
RA	5564	.	1	2002860	1	.	T	consensus_score=109.0	frequency=1	major_base=T	major_cov=15/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/23
RA	5565	.	1	2003325	0	A	G	consensus_score=220.6	frequency=1	major_base=G	major_cov=39/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/33
RA	5566	.	1	2004365	0	T	C	consensus_score=170.3	frequency=1	major_base=C	major_cov=26/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/34
RA	5567	.	1	2004757	0	A	C	consensus_score=201.6	frequency=1	major_base=C	major_cov=34/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/33
RA	5568	.	1	2005013	0	G	A	consensus_score=245.5	frequency=1	major_base=A	major_cov=28/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/56
RA	5569	.	1	2005664	0	G	A	bias_e_value=1410660	bias_p_value=0.665345	consensus_score=236.9	fisher_strand_p_value=0.392857	frequency=1	ks_quality_p_value=0.77246	major_base=A	major_cov=32/51	major_frequency=9.881e-01	minor_base=G	minor_cov=1/0	new_cov=32/51	polymorphism_frequency=9.881e-01	polymorphism_score=-5.2	prediction=consensus	ref_cov=1/0	total_cov=33/51
RA	5570	.	1	2006221	0	C	T	consensus_score=180.5	frequency=1	major_base=T	major_cov=38/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/25
RA	5571	.	1	2008723	0	T	A	consensus_score=212.7	frequency=1	major_base=A	major_cov=36/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/39
RA	5572	.	1	2008912	0	C	T	consensus_score=232.3	frequency=1	major_base=T	major_cov=47/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/34
RA	5573	.	1	2011355	0	T	C	consensus_score=190.4	frequency=1	major_base=C	major_cov=36/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/31
RA	5574	.	1	2012529	0	C	T	consensus_score=156.7	frequency=1	major_base=T	major_cov=26/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/30
RA	5575	.	1	2017989	0	G	A	consensus_score=231.7	frequency=1	major_base=A	major_cov=32/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/49
RA	5576	.	1	2018326	0	C	A	consensus_score=181.6	frequency=1	major_base=A	major_cov=25/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/39
RA	5577	.	1	2020982	0	T	C	consensus_score=265.9	frequency=1	major_base=C	major_cov=40/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/52
RA	5578	.	1	2023005	0	G	A	consensus_score=171.9	frequency=1	major_base=A	major_cov=32/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/29
RA	5579	.	1	2024185	0	A	G	consensus_score=118.5	frequency=1	major_base=G	major_cov=21/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/19
RA	5580	.	1	2025356	0	A	C	consensus_score=257.3	frequency=1	major_base=C	major_cov=51/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/34
RA	5581	.	1	2026915	0	A	G	consensus_score=252.0	frequency=1	major_base=G	major_cov=45/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/43
RA	5582	.	1	2027018	0	A	C	consensus_score=260.7	frequency=1	major_base=C	major_cov=49/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/37
RA	5583	.	1	2027458	0	G	A	consensus_score=176.8	frequency=1	major_base=A	major_cov=27/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/35
RA	5584	.	1	2028379	0	A	G	consensus_score=224.8	frequency=1	major_base=G	major_cov=49/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/29
RA	5585	.	1	2030855	0	A	G	consensus_score=244.0	frequency=1	major_base=G	major_cov=50/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/30
RA	5586	.	1	2032814	0	A	G	consensus_score=233.0	frequency=1	major_base=G	major_cov=39/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/37
RA	5587	.	1	2033648	0	A	G	consensus_score=206.9	frequency=1	major_base=G	major_cov=43/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/25
RA	5588	.	1	2034525	0	A	G	bias_e_value=1422590	bias_p_value=0.670973	consensus_score=261.2	fisher_strand_p_value=0.488636	frequency=1	ks_quality_p_value=0.630769	major_base=G	major_cov=45/42	major_frequency=9.886e-01	minor_base=A	minor_cov=0/1	new_cov=45/42	polymorphism_frequency=9.886e-01	polymorphism_score=-5.1	prediction=consensus	ref_cov=0/1	total_cov=45/43
RA	5589	.	1	2035067	0	T	C	consensus_score=195.7	frequency=1	major_base=C	major_cov=33/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/34
RA	5590	.	1	2035522	0	A	G	consensus_score=235.0	frequency=1	major_base=G	major_cov=45/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/38
RA	5591	.	1	2036360	0	G	A	consensus_score=251.3	frequency=1	major_base=A	major_cov=43/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/45
RA	5592	.	1	2036660	0	G	A	consensus_score=224.8	frequency=1	major_base=A	major_cov=44/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/35
RA	5593	.	1	2038269	0	T	C	consensus_score=286.5	frequency=1	major_base=C	major_cov=53/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/45
RA	5594	.	1	2038371	0	C	A	bias_e_value=0.000201135	bias_p_value=9.48661e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=168.5	fisher_strand_p_value=3.4637e-12	frequency=2.778e-01	ks_quality_p_value=1	major_base=C	major_cov=15/50	major_frequency=7.222e-01	minor_base=A	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.778e-01	polymorphism_score=20.0	prediction=polymorphism	ref_cov=15/50	total_cov=40/50
RA	5595	.	1	2040872	0	A	G	consensus_score=213.2	frequency=1	major_base=G	major_cov=42/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/34
RA	5596	.	1	2041125	0	T	C	consensus_score=267.5	frequency=1	major_base=C	major_cov=39/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/49
RA	5597	.	1	2043053	0	T	C	consensus_score=199.9	frequency=1	major_base=C	major_cov=39/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/27
RA	5598	.	1	2043071	0	C	T	consensus_score=183.1	frequency=1	major_base=T	major_cov=38/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/27
RA	5599	.	1	2043322	0	C	G	bias_e_value=0.000281654	bias_p_value=1.32844e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=126.0	fisher_strand_p_value=4.91301e-12	frequency=2.727e-01	ks_quality_p_value=1	major_base=C	major_cov=5/43	major_frequency=7.273e-01	minor_base=G	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.727e-01	polymorphism_score=11.8	prediction=polymorphism	ref_cov=5/43	total_cov=23/43
RA	5600	.	1	2047356	0	T	C	consensus_score=117.1	frequency=1	major_base=C	major_cov=20/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/21
RA	5601	.	1	2047488	0	A	G	consensus_score=90.8	frequency=1	major_base=G	major_cov=12/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/20
RA	5602	.	1	2047628	0	G	A	consensus_score=87.2	frequency=1	major_base=A	major_cov=14/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/18
RA	5603	.	1	2047859	0	A	G	consensus_score=175.9	frequency=1	major_base=G	major_cov=39/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/28
RA	5604	.	1	2047968	0	T	A	bias_e_value=1.36014	bias_p_value=6.41514e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=154.0	fisher_strand_p_value=3.53284e-08	frequency=2.222e-01	ks_quality_p_value=1	major_base=T	major_cov=42/14	major_frequency=7.778e-01	minor_base=A	minor_cov=0/16	new_cov=0/16	polymorphism_frequency=2.222e-01	polymorphism_score=10.7	prediction=polymorphism	ref_cov=42/14	total_cov=42/30
RA	5605	.	1	2048052	0	A	G	consensus_score=181.6	frequency=1	major_base=G	major_cov=31/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/33
RA	5606	.	1	2048252	0	C	T	consensus_score=241.5	frequency=1	major_base=T	major_cov=45/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/40
RA	5607	.	1	2048358	0	A	C	consensus_score=300.6	frequency=1	major_base=C	major_cov=47/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/51
RA	5608	.	1	2050005	0	G	A	consensus_score=117.4	frequency=1	major_base=A	major_cov=17/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/24
RA	5609	.	1	2055783	0	G	A	consensus_score=224.5	frequency=1	major_base=A	major_cov=28/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/51
RA	5610	.	1	2056671	0	G	A	consensus_score=281.5	frequency=1	major_base=A	major_cov=55/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/42
RA	5611	.	1	2056920	0	T	C	consensus_score=178.7	frequency=1	major_base=C	major_cov=28/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/32
RA	5612	.	1	2057670	0	A	G	consensus_score=262.8	frequency=1	major_base=G	major_cov=45/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/44
RA	5613	.	1	2058448	0	C	G	consensus_score=167.5	frequency=1	major_base=G	major_cov=26/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/31
RA	5614	.	1	2058981	0	A	G	consensus_score=215.7	frequency=1	major_base=G	major_cov=42/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/29
RA	5615	.	1	2059438	0	T	A	consensus_score=14.5	deleted=1	frequency=1	major_base=A	major_cov=3/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/4
RA	5616	.	1	2065020	0	C	A	consensus_score=230.5	frequency=1	major_base=A	major_cov=34/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/46
RA	5617	.	1	2065438	0	C	T	consensus_score=151.9	frequency=1	major_base=T	major_cov=30/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/24
RA	5618	.	1	2065711	0	C	T	consensus_score=191.8	frequency=1	major_base=T	major_cov=33/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/33
RA	5619	.	1	2066378	0	C	A	consensus_score=193.3	frequency=1	major_base=A	major_cov=38/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/28
RA	5620	.	1	2067842	0	G	A	consensus_score=177.4	frequency=1	major_base=A	major_cov=36/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/25
RA	5621	.	1	2068321	0	T	C	consensus_score=196.1	frequency=1	major_base=C	major_cov=45/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/22
RA	5622	.	1	2071404	0	T	G	consensus_score=170.6	frequency=1	major_base=G	major_cov=24/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/35
RA	5623	.	1	2071813	0	G	A	consensus_score=210.2	frequency=1	major_base=A	major_cov=34/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/40
RA	5624	.	1	2071985	0	G	A	consensus_score=206.5	frequency=1	major_base=A	major_cov=45/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/29
RA	5625	.	1	2073256	0	T	C	consensus_score=218.3	frequency=1	major_base=C	major_cov=29/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/47
RA	5626	.	1	2073357	0	T	C	consensus_score=243.4	frequency=1	major_base=C	major_cov=44/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/40
RA	5627	.	1	2073482	0	C	T	consensus_score=213.3	frequency=1	major_base=T	major_cov=42/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/32
RA	5628	.	1	2074427	0	A	C	consensus_score=213.1	frequency=1	major_base=C	major_cov=36/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/38
RA	5629	.	1	2074583	0	G	A	consensus_score=244.4	frequency=1	major_base=A	major_cov=48/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/37
RA	5630	.	1	2075665	0	A	G	consensus_score=232.7	frequency=1	major_base=G	major_cov=42/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/36
RA	5631	.	1	2076694	0	C	.	consensus_score=405.9	frequency=1	major_base=.	major_cov=48/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/48
RA	5632	.	1	2076802	0	G	C	consensus_score=210.9	frequency=1	major_base=C	major_cov=25/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/46
RA	5633	.	1	2076991	0	A	G	consensus_score=167.8	frequency=1	major_base=G	major_cov=31/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/27
RA	5634	.	1	2077370	0	G	A	consensus_score=277.6	frequency=1	major_base=A	major_cov=48/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/49
RA	5635	.	1	2077734	0	T	C	consensus_score=195.2	frequency=1	major_base=C	major_cov=36/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/34
RA	5636	.	1	2079198	0	C	T	consensus_score=243.0	frequency=1	major_base=T	major_cov=40/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/47
RA	5637	.	1	2079749	0	G	A	consensus_score=165.1	frequency=1	major_base=A	major_cov=28/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/29
RA	5638	.	1	2081520	0	A	G	consensus_score=180.9	frequency=1	major_base=G	major_cov=35/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/29
RA	5639	.	1	2082122	0	A	G	consensus_score=207.8	frequency=1	major_base=G	major_cov=41/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/32
RA	5640	.	1	2085088	0	C	A	bias_e_value=0.299965	bias_p_value=1.4148e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=143.1	fisher_strand_p_value=7.1619e-09	frequency=2.561e-01	ks_quality_p_value=1	major_base=C	major_cov=42/19	major_frequency=7.439e-01	minor_base=A	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=2.561e-01	polymorphism_score=16.8	prediction=polymorphism	ref_cov=42/19	total_cov=42/40
RA	5641	.	1	2085104	0	C	A	bias_e_value=0.0556732	bias_p_value=2.62585e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=81.8	fisher_strand_p_value=1.21994e-09	frequency=3.768e-01	ks_quality_p_value=1	major_base=C	major_cov=30/13	major_frequency=6.232e-01	minor_base=A	minor_cov=0/26	new_cov=0/26	polymorphism_frequency=3.768e-01	polymorphism_score=27.0	prediction=polymorphism	ref_cov=30/13	total_cov=30/39
RA	5642	.	1	2085860	0	G	A	consensus_score=241.1	frequency=1	major_base=A	major_cov=42/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/45
RA	5643	.	1	2088582	0	T	C	consensus_score=204.2	frequency=1	major_base=C	major_cov=31/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/40
RA	5644	.	1	2088723	0	T	C	consensus_score=293.9	frequency=1	major_base=C	major_cov=36/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/61
RA	5645	.	1	2089379	0	T	C	consensus_score=266.2	frequency=1	major_base=C	major_cov=39/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/48
RA	5646	.	1	2089943	0	T	C	consensus_score=263.2	frequency=1	major_base=C	major_cov=44/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/45
RA	5647	.	1	2090100	0	G	A	consensus_score=191.4	frequency=1	major_base=A	major_cov=35/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/33
RA	5648	.	1	2092144	0	T	G	consensus_score=359.3	frequency=1	major_base=G	major_cov=57/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/65
RA	5649	.	1	2093586	0	T	G	consensus_score=316.1	frequency=1	major_base=G	major_cov=52/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/58
RA	5650	.	1	2096004	0	G	A	consensus_score=282.9	frequency=1	major_base=A	major_cov=54/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/45
RA	5651	.	1	2096181	0	T	C	consensus_score=257.0	frequency=1	major_base=C	major_cov=38/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/48
RA	5652	.	1	2096376	0	T	G	consensus_score=169.0	frequency=1	major_base=G	major_cov=14/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/43
RA	5653	.	1	2096646	0	T	C	consensus_score=226.5	frequency=1	major_base=C	major_cov=37/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/40
RA	5654	.	1	2097991	0	C	T	consensus_score=216.3	frequency=1	major_base=T	major_cov=46/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/31
RA	5655	.	1	2098766	0	C	T	consensus_score=308.9	frequency=1	major_base=T	major_cov=51/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/54
RA	5656	.	1	2100666	0	A	G	consensus_score=399.7	frequency=1	major_base=G	major_cov=58/76	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/76	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/76
RA	5657	.	1	2101860	0	A	G	consensus_score=198.0	frequency=1	major_base=G	major_cov=45/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/25
RA	5658	.	1	2102863	0	C	A	consensus_score=199.5	frequency=1	major_base=A	major_cov=35/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/36
RA	5659	.	1	2103554	0	T	A	bias_e_value=32.3842	bias_p_value=1.52742e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=144.0	fisher_strand_p_value=1.03324e-06	frequency=2.568e-01	ks_quality_p_value=1	major_base=T	major_cov=34/21	major_frequency=7.432e-01	minor_base=A	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=2.568e-01	polymorphism_score=12.6	prediction=polymorphism	ref_cov=34/21	total_cov=34/40
RA	5660	.	1	2105983	0	C	A	consensus_score=224.0	frequency=1	major_base=A	major_cov=36/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/41
RA	5661	.	1	2106085	0	T	C	consensus_score=230.2	frequency=1	major_base=C	major_cov=48/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/29
RA	5662	.	1	2106259	0	G	A	bias_e_value=0.000241492	bias_p_value=1.13901e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=159.6	fisher_strand_p_value=4.18771e-12	frequency=2.476e-01	ks_quality_p_value=1	major_base=G	major_cov=58/21	major_frequency=7.524e-01	minor_base=A	minor_cov=0/26	new_cov=0/26	polymorphism_frequency=2.476e-01	polymorphism_score=16.5	prediction=polymorphism	ref_cov=58/21	total_cov=58/47
RA	5663	.	1	2106264	0	A	C	bias_e_value=6.93203e-07	bias_p_value=3.26952e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=185.5	fisher_strand_p_value=9.83224e-15	frequency=3.301e-01	ks_quality_p_value=1	major_base=A	major_cov=55/14	major_frequency=6.699e-01	minor_base=C	minor_cov=1/33	new_cov=1/33	polymorphism_frequency=3.301e-01	polymorphism_score=16.7	prediction=polymorphism	ref_cov=55/14	total_cov=56/47
RA	5664	.	1	2106284	0	A	C	bias_e_value=2.05136e-11	bias_p_value=9.67535e-18	consensus_reject=FREQUENCY_CUTOFF	consensus_score=165.5	fisher_strand_p_value=2.20093e-19	frequency=3.673e-01	ks_quality_p_value=1	major_base=A	major_cov=54/8	major_frequency=6.327e-01	minor_base=C	minor_cov=0/36	new_cov=0/36	polymorphism_frequency=3.673e-01	polymorphism_score=14.1	prediction=polymorphism	ref_cov=54/8	total_cov=54/44
RA	5665	.	1	2109698	0	G	A	consensus_score=231.2	frequency=1	major_base=A	major_cov=39/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/43
RA	5666	.	1	2110010	0	T	C	consensus_score=177.8	frequency=1	major_base=C	major_cov=32/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/31
RA	5667	.	1	2115392	0	T	C	consensus_score=230.8	frequency=1	major_base=C	major_cov=43/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/39
RA	5668	.	1	2118701	0	G	T	consensus_score=310.5	frequency=1	major_base=T	major_cov=46/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/62
RA	5669	.	1	2119104	0	T	C	consensus_score=184.5	frequency=1	major_base=C	major_cov=41/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/22
MC	5670	.	1	8336	30170	0	0	left_inside_cov=23	left_outside_cov=25	right_inside_cov=23	right_outside_cov=24
MC	5671	.	1	91658	91661	0	0	left_inside_cov=0	left_outside_cov=48	right_inside_cov=0	right_outside_cov=48
MC	5672	.	1	91742	92559	0	0	left_inside_cov=23	left_outside_cov=24	right_inside_cov=21	right_outside_cov=24
MC	5673	.	1	95053	101596	0	0	left_inside_cov=19	left_outside_cov=27	right_inside_cov=0	right_outside_cov=106
MC	5674	.	1	102274	102505	0	0	left_inside_cov=21	left_outside_cov=28	right_inside_cov=23	right_outside_cov=25
MC	5675	.	1	102756	103257	0	0	left_inside_cov=22	left_outside_cov=26	right_inside_cov=23	right_outside_cov=25
MC	5676	.	1	103663	103918	0	0	left_inside_cov=0	left_outside_cov=43	right_inside_cov=0	right_outside_cov=140
MC	5677	.	1	258577	258822	113	65	left_inside_cov=23	left_outside_cov=25	right_inside_cov=23	right_outside_cov=24
MC	5678	.	1	263387	263389	0	0	left_inside_cov=0	left_outside_cov=98	right_inside_cov=0	right_outside_cov=99
MC	5679	.	1	290465	295837	169	5188	left_inside_cov=23	left_outside_cov=25	right_inside_cov=23	right_outside_cov=24
MC	5680	.	1	303133	303195	0	0	left_inside_cov=0	left_outside_cov=60	right_inside_cov=0	right_outside_cov=60
MC	5681	.	1	323831	323849	0	0	left_inside_cov=0	left_outside_cov=85	right_inside_cov=0	right_outside_cov=85
MC	5682	.	1	380766	380892	0	0	left_inside_cov=0	left_outside_cov=84	right_inside_cov=21	right_outside_cov=27
MC	5683	.	1	417336	417728	0	0	left_inside_cov=0	left_outside_cov=121	right_inside_cov=0	right_outside_cov=121
MC	5684	.	1	436859	436929	0	0	left_inside_cov=22	left_outside_cov=24	right_inside_cov=0	right_outside_cov=24
MC	5685	.	1	439398	439413	0	0	left_inside_cov=23	left_outside_cov=29	right_inside_cov=0	right_outside_cov=103
MC	5686	.	1	439643	445186	364	5164	left_inside_cov=22	left_outside_cov=26	right_inside_cov=22	right_outside_cov=26
MC	5687	.	1	451499	451501	0	0	left_inside_cov=0	left_outside_cov=95	right_inside_cov=0	right_outside_cov=94
MC	5688	.	1	455108	456716	0	0	left_inside_cov=0	left_outside_cov=132	right_inside_cov=0	right_outside_cov=130
MC	5689	.	1	457672	459985	0	0	left_inside_cov=0	left_outside_cov=75	right_inside_cov=23	right_outside_cov=26
MC	5690	.	1	501335	501358	0	0	left_inside_cov=0	left_outside_cov=86	right_inside_cov=0	right_outside_cov=85
MC	5691	.	1	522979	524440	0	0	left_inside_cov=0	left_outside_cov=101	right_inside_cov=0	right_outside_cov=101
MC	5692	.	1	535191	535194	0	0	left_inside_cov=0	left_outside_cov=166	right_inside_cov=0	right_outside_cov=166
MC	5693	.	1	601440	602372	0	0	left_inside_cov=0	left_outside_cov=48	right_inside_cov=0	right_outside_cov=57
MC	5694	.	1	602962	603088	0	0	left_inside_cov=17	left_outside_cov=31	right_inside_cov=0	right_outside_cov=81
MC	5695	.	1	675841	675856	0	0	left_inside_cov=0	left_outside_cov=82	right_inside_cov=0	right_outside_cov=82
MC	5696	.	1	723886	724302	0	3	left_inside_cov=20	left_outside_cov=33	right_inside_cov=18	right_outside_cov=24
MC	5697	.	1	731464	736822	5143	200	left_inside_cov=22	left_outside_cov=24	right_inside_cov=23	right_outside_cov=24
MC	5698	.	1	761033	761036	0	0	left_inside_cov=0	left_outside_cov=95	right_inside_cov=0	right_outside_cov=95
MC	5699	.	1	806081	812895	0	0	left_inside_cov=23	left_outside_cov=25	right_inside_cov=21	right_outside_cov=24
MC	5700	.	1	846494	846569	0	0	left_inside_cov=0	left_outside_cov=86	right_inside_cov=0	right_outside_cov=92
MC	5701	.	1	954874	956522	0	0	left_inside_cov=0	left_outside_cov=76	right_inside_cov=1	right_outside_cov=77
MC	5702	.	1	967649	969513	0	0	left_inside_cov=0	left_outside_cov=102	right_inside_cov=0	right_outside_cov=102
MC	5703	.	1	1032840	1034088	0	0	left_inside_cov=0	left_outside_cov=87	right_inside_cov=0	right_outside_cov=87
MC	5704	.	1	1036802	1037397	0	0	left_inside_cov=22	left_outside_cov=25	right_inside_cov=23	right_outside_cov=25
MC	5705	.	1	1059641	1061037	0	0	left_inside_cov=21	left_outside_cov=27	right_inside_cov=23	right_outside_cov=24
MC	5706	.	1	1064396	1070020	5398	211	left_inside_cov=23	left_outside_cov=26	right_inside_cov=22	right_outside_cov=24
MC	5707	.	1	1173367	1173407	0	0	left_inside_cov=0	left_outside_cov=73	right_inside_cov=0	right_outside_cov=74
MC	5708	.	1	1204510	1204879	0	0	left_inside_cov=18	left_outside_cov=24	right_inside_cov=0	right_outside_cov=41
MC	5709	.	1	1204940	1206849	0	0	left_inside_cov=19	left_outside_cov=24	right_inside_cov=22	right_outside_cov=28
MC	5710	.	1	1250022	1251774	0	52	left_inside_cov=23	left_outside_cov=24	right_inside_cov=23	right_outside_cov=27
MC	5711	.	1	1296455	1297160	0	0	left_inside_cov=0	left_outside_cov=59	right_inside_cov=22	right_outside_cov=24
MC	5712	.	1	1297383	1299490	0	0	left_inside_cov=0	left_outside_cov=61	right_inside_cov=23	right_outside_cov=24
MC	5713	.	1	1301711	1302472	0	0	left_inside_cov=22	left_outside_cov=24	right_inside_cov=23	right_outside_cov=24
MC	5714	.	1	1313948	1317493	0	0	left_inside_cov=0	left_outside_cov=74	right_inside_cov=0	right_outside_cov=73
MC	5715	.	1	1402084	1402686	0	0	left_inside_cov=0	left_outside_cov=35	right_inside_cov=0	right_outside_cov=35
MC	5716	.	1	1407328	1408176	0	0	left_inside_cov=0	left_outside_cov=66	right_inside_cov=0	right_outside_cov=66
MC	5717	.	1	1421158	1422291	0	0	left_inside_cov=23	left_outside_cov=24	right_inside_cov=23	right_outside_cov=24
MC	5718	.	1	1446089	1446098	0	0	left_inside_cov=0	left_outside_cov=66	right_inside_cov=0	right_outside_cov=66
MC	5719	.	1	1458939	1460435	1012	0	left_inside_cov=23	left_outside_cov=24	right_inside_cov=23	right_outside_cov=24
MC	5720	.	1	1460808	1461544	0	0	left_inside_cov=1	left_outside_cov=32	right_inside_cov=4	right_outside_cov=28
MC	5721	.	1	1483906	1483909	0	0	left_inside_cov=0	left_outside_cov=84	right_inside_cov=0	right_outside_cov=84
MC	5722	.	1	1484427	1486175	0	0	left_inside_cov=23	left_outside_cov=24	right_inside_cov=23	right_outside_cov=24
MC	5723	.	1	1511381	1511383	0	0	left_inside_cov=0	left_outside_cov=103	right_inside_cov=0	right_outside_cov=101
MC	5724	.	1	1516232	1516244	0	0	left_inside_cov=0	left_outside_cov=78	right_inside_cov=0	right_outside_cov=78
MC	5725	.	1	1564818	1564820	0	0	left_inside_cov=0	left_outside_cov=46	right_inside_cov=0	right_outside_cov=46
MC	5726	.	1	1572201	1573147	0	0	left_inside_cov=0	left_outside_cov=59	right_inside_cov=0	right_outside_cov=60
MC	5727	.	1	1580396	1580465	0	68	left_inside_cov=0	left_outside_cov=95	right_inside_cov=22	right_outside_cov=25
MC	5728	.	1	1580743	1585843	153	4932	left_inside_cov=23	left_outside_cov=24	right_inside_cov=23	right_outside_cov=24
MC	5729	.	1	1678017	1683447	129	5286	left_inside_cov=23	left_outside_cov=24	right_inside_cov=22	right_outside_cov=24
MC	5730	.	1	1747628	1747895	0	0	left_inside_cov=22	left_outside_cov=24	right_inside_cov=23	right_outside_cov=24
MC	5731	.	1	1775040	1775046	0	0	left_inside_cov=0	left_outside_cov=77	right_inside_cov=0	right_outside_cov=78
MC	5732	.	1	1786508	1787798	0	0	left_inside_cov=0	left_outside_cov=98	right_inside_cov=0	right_outside_cov=98
MC	5733	.	1	1788003	1788717	0	0	left_inside_cov=23	left_outside_cov=24	right_inside_cov=23	right_outside_cov=29
MC	5734	.	1	1852961	1853587	0	0	left_inside_cov=23	left_outside_cov=24	right_inside_cov=23	right_outside_cov=25
MC	5735	.	1	1878572	1879444	0	0	left_inside_cov=23	left_outside_cov=24	right_inside_cov=21	right_outside_cov=24
MC	5736	.	1	2001170	2002005	0	0	left_inside_cov=0	left_outside_cov=63	right_inside_cov=0	right_outside_cov=63
MC	5737	.	1	2044378	2045378	0	0	left_inside_cov=0	left_outside_cov=78	right_inside_cov=0	right_outside_cov=77
MC	5738	.	1	2059401	2062098	0	0	left_inside_cov=20	left_outside_cov=25	right_inside_cov=23	right_outside_cov=30
JC	5739	.	1	1	1	1	2120195	-1	0	alignment_overlap=0	circular_chromosome=1	coverage_minus=45	coverage_plus=51	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=214	key=1__1__1__1__2120195__-1__0____251__251__0__0	max_left=246	max_left_minus=246	max_left_plus=243	max_min_left=123	max_min_left_minus=112	max_min_left_plus=123	max_min_right=124	max_min_right_minus=124	max_min_right_plus=120	max_pos_hash_score=430	max_right=250	max_right_minus=250	max_right_plus=249	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.09	new_junction_read_count=96	polymorphism_frequency=1.000e+00	pos_hash_score=70	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=96
JC	5740	.	1	5141	1	1	621941	-1	0	alignment_overlap=2	coverage_minus=16	coverage_plus=32	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=212	key=1__5141__1__1__621943__-1__2____251__251__0__0	max_left=62	max_left_minus=60	max_left_plus=62	max_min_left=62	max_min_left_minus=60	max_min_left_plus=62	max_min_right=5	max_min_right_minus=5	max_min_right_plus=0	max_pos_hash_score=426	max_right=245	max_right_minus=245	max_right_plus=239	neg_log10_pos_hash_p_value=1.7	new_junction_coverage=0.56	new_junction_read_count=49	polymorphism_frequency=9.800e-01	pos_hash_score=28	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=2	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.02	side_2_overlap=0	side_2_possible_overlap_registers=212	side_2_read_count=2	side_2_redundant=0	total_non_overlap_reads=48
JC	5741	.	1	5166	-1	1	5173	1	0	alignment_overlap=6	coverage_minus=15	coverage_plus=12	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=208	key=1__5166__-1__1__5167__1__6____251__251__0__1	max_left=98	max_left_minus=98	max_left_plus=91	max_min_left=98	max_min_left_minus=98	max_min_left_plus=91	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=418	max_right=224	max_right_minus=224	max_right_plus=207	neg_log10_pos_hash_p_value=2.9	new_junction_coverage=0.42	new_junction_read_count=36	polymorphism_frequency=1.000e+00	pos_hash_score=18	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=6	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=27
JC	5742	.	1	5166	-1	1	546399	-1	0	alignment_overlap=32	coverage_minus=37	coverage_plus=27	flanking_left=251	flanking_right=251	frequency=6.667e-01	junction_possible_overlap_registers=182	key=1__5166__-1__1__546431__-1__32____251__251__0__0	max_left=215	max_left_minus=215	max_left_plus=207	max_min_left=103	max_min_left_minus=103	max_min_left_plus=93	max_min_right=109	max_min_right_minus=108	max_min_right_plus=109	max_pos_hash_score=366	max_right=135	max_right_minus=135	max_right_plus=133	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.87	new_junction_read_count=65	polymorphism_frequency=6.667e-01	pos_hash_score=46	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=32	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.87	side_2_overlap=0	side_2_possible_overlap_registers=182	side_2_read_count=65	side_2_redundant=0	total_non_overlap_reads=64
JC	5743	.	1	5271	-1	1	380862	1	-4	alignment_overlap=-4	coverage_minus=2	coverage_plus=6	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=210	key=1__5271__-1__1__380862__1__-4__ATTT__251__251__0__0	max_left=11	max_left_minus=4	max_left_plus=11	max_min_left=11	max_min_left_minus=4	max_min_left_plus=11	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=412	max_right=247	max_right_minus=246	max_right_plus=247	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=1.000e+00	pos_hash_score=4	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=5	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=209	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=8	unique_read_sequence=ATTT
JC	5744	.	1	6721	1	1	7240	1	0	alignment_overlap=14	coverage_minus=3	coverage_plus=0	flanking_left=251	flanking_right=251	frequency=3.168e-02	junction_possible_overlap_registers=200	key=1__6721__1__1__7226__1__14____251__251__0__0	max_left=180	max_left_minus=180	max_left_plus=0	max_min_left=82	max_min_left_minus=82	max_min_left_plus=0	max_min_right=56	max_min_right_minus=56	max_min_right_plus=0	max_pos_hash_score=402	max_right=191	max_right_minus=191	max_right_plus=0	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.168e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.31	side_1_overlap=14	side_1_possible_overlap_registers=214	side_1_read_count=116	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.91	side_2_overlap=0	side_2_possible_overlap_registers=200	side_2_read_count=75	side_2_redundant=0	total_non_overlap_reads=3
JC	5745	.	1	47297	1	1	1423738	-1	0	alignment_overlap=1	coverage_minus=26	coverage_plus=24	flanking_left=251	flanking_right=251	frequency=7.030e-01	junction_possible_overlap_registers=213	key=1__47297__1__1__1423739__-1__1____251__251__0__0	max_left=240	max_left_minus=217	max_left_plus=240	max_min_left=115	max_min_left_minus=107	max_min_left_plus=115	max_min_right=123	max_min_right_minus=123	max_min_right_plus=107	max_pos_hash_score=428	max_right=213	max_right_minus=187	max_right_plus=213	neg_log10_pos_hash_p_value=1.0	new_junction_coverage=0.59	new_junction_read_count=52	polymorphism_frequency=7.030e-01	pos_hash_score=38	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.14	side_1_overlap=1	side_1_possible_overlap_registers=214	side_1_read_count=12	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.36	side_2_overlap=0	side_2_possible_overlap_registers=213	side_2_read_count=32	side_2_redundant=0	total_non_overlap_reads=50
JC	5746	.	1	88968	-1	1	103919	1	0	alignment_overlap=6	coverage_minus=73	coverage_plus=50	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=208	key=1__88968__-1__1__103913__1__6____251__251__0__0	max_left=241	max_left_minus=236	max_left_plus=241	max_min_left=117	max_min_left_minus=117	max_min_left_plus=115	max_min_right=107	max_min_right_minus=107	max_min_right_plus=104	max_pos_hash_score=418	max_right=238	max_right_minus=238	max_right_plus=231	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.43	new_junction_read_count=123	polymorphism_frequency=1.000e+00	pos_hash_score=73	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=6	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=208	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=123
JC	5747	.	1	88968	1	1	1514992	-1	0	alignment_overlap=0	coverage_minus=57	coverage_plus=56	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=214	key=1__88968__1__1__1514992__-1__0____251__251__0__0	max_left=233	max_left_minus=225	max_left_plus=233	max_min_left=125	max_min_left_minus=125	max_min_left_plus=112	max_min_right=119	max_min_right_minus=119	max_min_right_plus=114	max_pos_hash_score=430	max_right=242	max_right_minus=242	max_right_plus=225	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.31	new_junction_read_count=116	polymorphism_frequency=9.957e-01	pos_hash_score=63	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.01	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=1	side_2_redundant=0	total_non_overlap_reads=113
JC	5748	.	1	89648	1	1	602373	1	0	alignment_overlap=9	coverage_minus=26	coverage_plus=25	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=205	key=1__89648__1__1__602364__1__9____251__251__0__0	max_left=229	max_left_minus=181	max_left_plus=229	max_min_left=117	max_min_left_minus=117	max_min_left_plus=72	max_min_right=96	max_min_right_minus=96	max_min_right_plus=95	max_pos_hash_score=412	max_right=241	max_right_minus=234	max_right_plus=241	neg_log10_pos_hash_p_value=1.0	new_junction_coverage=0.62	new_junction_read_count=52	polymorphism_frequency=8.008e-01	pos_hash_score=36	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.31	side_1_overlap=9	side_1_possible_overlap_registers=214	side_1_read_count=27	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=51
JC	5749	.	1	89704	1	1	89698	-1	0	alignment_overlap=9	coverage_minus=20	coverage_plus=11	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=205	key=1__89704__1__1__89707__-1__9____251__251__0__0	max_left=237	max_left_minus=218	max_left_plus=237	max_min_left=120	max_min_left_minus=116	max_min_left_plus=120	max_min_right=103	max_min_right_minus=103	max_min_right_plus=46	max_pos_hash_score=412	max_right=240	max_right_minus=240	max_right_plus=194	neg_log10_pos_hash_p_value=2.2	new_junction_coverage=0.37	new_junction_read_count=31	polymorphism_frequency=8.096e-01	pos_hash_score=23	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.11	side_1_overlap=9	side_1_possible_overlap_registers=214	side_1_read_count=10	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.06	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=5	side_2_redundant=0	total_non_overlap_reads=31
JC	5750	.	1	90414	-1	1	90456	1	0	alignment_overlap=1	coverage_minus=35	coverage_plus=18	flanking_left=251	flanking_right=251	frequency=3.440e-01	junction_possible_overlap_registers=213	key=1__90414__-1__1__90455__1__1____251__251__0__0	max_left=219	max_left_minus=209	max_left_plus=219	max_min_left=124	max_min_left_minus=124	max_min_left_plus=113	max_min_right=120	max_min_right_minus=120	max_min_right_plus=120	max_pos_hash_score=428	max_right=142	max_right_minus=142	max_right_plus=142	neg_log10_pos_hash_p_value=1.2	new_junction_coverage=0.71	new_junction_read_count=62	polymorphism_frequency=3.440e-01	pos_hash_score=35	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.30	side_1_overlap=1	side_1_possible_overlap_registers=214	side_1_read_count=115	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.39	side_2_overlap=0	side_2_possible_overlap_registers=213	side_2_read_count=122	side_2_redundant=0	total_non_overlap_reads=53
JC	5751	.	1	90793	-1	1	90835	1	-41	alignment_overlap=-41	coverage_minus=11	coverage_plus=22	flanking_left=251	flanking_right=251	frequency=2.933e-01	junction_possible_overlap_registers=173	key=1__90793__-1__1__90835__1__-41__GCTACATATTCAGTTCTCCGGGCTTCATTTTGAGCTTTGTT__251__251__0__0	max_left=71	max_left_minus=61	max_left_plus=71	max_min_left=71	max_min_left_minus=61	max_min_left_plus=71	max_min_right=64	max_min_right_minus=6	max_min_right_plus=64	max_pos_hash_score=348	max_right=208	max_right_minus=208	max_right_plus=204	neg_log10_pos_hash_p_value=1.8	new_junction_coverage=0.73	new_junction_read_count=52	polymorphism_frequency=2.933e-01	pos_hash_score=22	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.81	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=160	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.70	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=150	side_2_redundant=0	total_non_overlap_reads=33	unique_read_sequence=GCTACATATTCAGTTCTCCGGGCTTCATTTTGAGCTTTGTT
JC	5752	.	1	91097	-1	1	101597	1	0	alignment_overlap=3	coverage_minus=45	coverage_plus=50	flanking_left=251	flanking_right=251	frequency=6.915e-01	junction_possible_overlap_registers=211	key=1__91097__-1__1__101594__1__3____251__251__0__0	max_left=246	max_left_minus=215	max_left_plus=246	max_min_left=116	max_min_left_minus=116	max_min_left_plus=102	max_min_right=123	max_min_right_minus=123	max_min_right_plus=107	max_pos_hash_score=424	max_right=242	max_right_minus=242	max_right_plus=217	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.21	new_junction_read_count=105	polymorphism_frequency=6.915e-01	pos_hash_score=59	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.08	side_1_overlap=3	side_1_possible_overlap_registers=214	side_1_read_count=95	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=211	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=95
JC	5753	.	1	91657	-1	1	91662	1	0	alignment_overlap=0	coverage_minus=22	coverage_plus=22	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=214	key=1__91657__-1__1__91662__1__0____251__251__0__0	max_left=196	max_left_minus=196	max_left_plus=172	max_min_left=62	max_min_left_minus=56	max_min_left_plus=62	max_min_right=109	max_min_right_minus=109	max_min_right_plus=108	max_pos_hash_score=430	max_right=109	max_right_minus=109	max_right_plus=108	neg_log10_pos_hash_p_value=2.0	new_junction_coverage=0.54	new_junction_read_count=48	polymorphism_frequency=1.000e+00	pos_hash_score=26	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=44
JC	5754	.	1	103662	-1	1	601411	-1	-3	alignment_overlap=-3	coverage_minus=18	coverage_plus=17	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=211	key=1__103662__-1__1__601411__-1__-3__GGG__251__251__0__0	max_left=244	max_left_minus=244	max_left_plus=203	max_min_left=62	max_min_left_minus=42	max_min_left_plus=62	max_min_right=54	max_min_right_minus=50	max_min_right_plus=54	max_pos_hash_score=424	max_right=226	max_right_minus=225	max_right_plus=226	neg_log10_pos_hash_p_value=1.8	new_junction_coverage=0.49	new_junction_read_count=43	polymorphism_frequency=1.000e+00	pos_hash_score=27	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=35	unique_read_sequence=GGG
JC	5755	.	1	106822	-1	1	106862	-1	0	alignment_overlap=8	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=2.624e-02	junction_possible_overlap_registers=206	key=1__106822__-1__1__106870__-1__8____251__251__0__0	max_left=91	max_left_minus=91	max_left_plus=5	max_min_left=91	max_min_left_minus=91	max_min_left_plus=5	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=414	max_right=238	max_right_minus=190	max_right_plus=238	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=2.624e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.33	side_1_overlap=8	side_1_possible_overlap_registers=214	side_1_read_count=117	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.29	side_2_overlap=0	side_2_possible_overlap_registers=206	side_2_read_count=110	side_2_redundant=0	total_non_overlap_reads=3
JC	5756	.	1	121491	1	1	121498	-1	-10	alignment_overlap=-10	coverage_minus=43	coverage_plus=43	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=204	key=1__121491__1__1__121498__-1__-10__TGAGCGTGGC__251__251__0__1	max_left=240	max_left_minus=238	max_left_plus=240	max_min_left=115	max_min_left_minus=109	max_min_left_plus=115	max_min_right=109	max_min_right_minus=109	max_min_right_plus=108	max_pos_hash_score=410	max_right=238	max_right_minus=238	max_right_plus=235	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.03	new_junction_read_count=87	polymorphism_frequency=9.682e-01	pos_hash_score=63	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.03	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=3	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=86	unique_read_sequence=TGAGCGTGGC
JC	5757	.	1	139910	1	1	140420	1	0	alignment_overlap=15	coverage_minus=3	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.485e-02	junction_possible_overlap_registers=199	key=1__139910__1__1__140405__1__15____251__251__0__0	max_left=184	max_left_minus=184	max_left_plus=71	max_min_left=71	max_min_left_minus=42	max_min_left_plus=71	max_min_right=93	max_min_right_minus=93	max_min_right_plus=0	max_pos_hash_score=400	max_right=194	max_right_minus=194	max_right_plus=165	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=3.485e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.46	side_1_overlap=15	side_1_possible_overlap_registers=214	side_1_read_count=129	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.91	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=157	side_2_redundant=0	total_non_overlap_reads=5
JC	5758	.	1	171699	-1	1	524855	-1	-21	alignment_overlap=-21	coverage_minus=1	coverage_plus=5	flanking_left=251	flanking_right=251	frequency=9.981e-02	junction_possible_overlap_registers=193	key=1__171699__-1__1__524855__-1__-21__ATAAGGCGATTTTACGCCATC__251__251__0__0	max_left=58	max_left_minus=2	max_left_plus=58	max_min_left=58	max_min_left_minus=2	max_min_left_plus=58	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=388	max_right=160	max_right_minus=146	max_right_plus=160	neg_log10_pos_hash_p_value=5.6	new_junction_coverage=0.13	new_junction_read_count=10	polymorphism_frequency=9.981e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.50	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=132	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.77	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=68	side_2_redundant=0	total_non_overlap_reads=6	unique_read_sequence=ATAAGGCGATTTTACGCCATC
JC	5759	.	1	171854	-1	1	380765	-1	0	alignment_overlap=40	coverage_minus=28	coverage_plus=31	flanking_left=251	flanking_right=251	frequency=6.134e-01	junction_possible_overlap_registers=174	key=1__171854__-1__1__380805__-1__40____251__251__0__0	max_left=211	max_left_minus=205	max_left_plus=211	max_min_left=105	max_min_left_minus=97	max_min_left_plus=105	max_min_right=92	max_min_right_minus=92	max_min_right_plus=44	max_pos_hash_score=350	max_right=207	max_right_minus=201	max_right_plus=207	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.84	new_junction_read_count=60	polymorphism_frequency=6.134e-01	pos_hash_score=42	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.05	side_1_overlap=40	side_1_possible_overlap_registers=214	side_1_read_count=93	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=174	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=59
JC	5760	.	1	187058	-1	1	187151	-1	0	alignment_overlap=7	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=2.687e-02	junction_possible_overlap_registers=207	key=1__187058__-1__1__187158__-1__7____251__251__0__0	max_left=141	max_left_minus=141	max_left_plus=141	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=68	max_min_right_minus=68	max_min_right_plus=68	max_pos_hash_score=416	max_right=68	max_right_minus=68	max_right_plus=68	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=2.687e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.28	side_1_overlap=7	side_1_possible_overlap_registers=214	side_1_read_count=113	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.27	side_2_overlap=0	side_2_possible_overlap_registers=207	side_2_read_count=108	side_2_redundant=0	total_non_overlap_reads=3
JC	5761	.	1	258307	1	1	1580395	-1	0	alignment_overlap=5	coverage_minus=37	coverage_plus=45	flanking_left=251	flanking_right=251	frequency=6.050e-01	junction_possible_overlap_registers=209	key=1__258307__1__1__1580400__-1__5____251__251__0__0	max_left=185	max_left_minus=156	max_left_plus=185	max_min_left=121	max_min_left_minus=121	max_min_left_plus=121	max_min_right=120	max_min_right_minus=116	max_min_right_plus=120	max_pos_hash_score=420	max_right=227	max_right_minus=205	max_right_plus=227	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=1.03	new_junction_read_count=89	polymorphism_frequency=6.050e-01	pos_hash_score=55	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.35	side_1_overlap=5	side_1_possible_overlap_registers=214	side_1_read_count=119	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=82
JC	5762	.	1	258496	-1	1	439414	1	0	alignment_overlap=3	coverage_minus=50	coverage_plus=44	flanking_left=251	flanking_right=251	frequency=7.208e-01	junction_possible_overlap_registers=211	key=1__258496__-1__1__439411__1__3____251__251__0__0	max_left=187	max_left_minus=180	max_left_plus=187	max_min_left=117	max_min_left_minus=117	max_min_left_plus=116	max_min_right=123	max_min_right_minus=114	max_min_right_plus=123	max_pos_hash_score=424	max_right=245	max_right_minus=214	max_right_plus=245	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.13	new_junction_read_count=98	polymorphism_frequency=7.208e-01	pos_hash_score=65	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.87	side_1_overlap=3	side_1_possible_overlap_registers=214	side_1_read_count=77	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=211	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=94
JC	5763	.	1	263386	-1	1	263390	1	0	alignment_overlap=3	coverage_minus=54	coverage_plus=44	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=211	key=1__263386__-1__1__263387__1__3____251__251__0__0	max_left=242	max_left_minus=242	max_left_plus=237	max_min_left=117	max_min_left_minus=115	max_min_left_plus=117	max_min_right=121	max_min_right_minus=121	max_min_right_plus=120	max_pos_hash_score=424	max_right=245	max_right_minus=245	max_right_plus=239	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.13	new_junction_read_count=98	polymorphism_frequency=1.000e+00	pos_hash_score=68	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=3	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=211	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=98
JC	5764	.	1	290634	-1	1	290635	1	-18	alignment_overlap=-18	coverage_minus=120	coverage_plus=177	flanking_left=251	flanking_right=251	frequency=NA	junction_possible_overlap_registers=196	key=1__290634__-1__1__290635__1__-18__TTCTCTTTCTCTTTCTCT__251__251__1__1	max_left=230	max_left_minus=219	max_left_plus=230	max_min_left=113	max_min_left_minus=101	max_min_left_plus=113	max_min_right=116	max_min_right_minus=116	max_min_right_plus=115	max_pos_hash_score=354	max_right=226	max_right_minus=226	max_right_plus=224	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=3.84	new_junction_read_count=310	polymorphism_frequency=NA	pos_hash_score=118	prediction=unknown	side_1_annotate_key=repeat	side_1_continuation=20	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=297	unique_read_sequence=TTCTCTTTCTCTTTCTCT
JC	5765	.	1	292463	1	1	292602	1	0	alignment_overlap=17	coverage_minus=6	coverage_plus=0	flanking_left=251	flanking_right=251	frequency=NA	junction_possible_overlap_registers=197	key=1__292463__1__1__292585__1__17____251__251__1__1	max_left=103	max_left_minus=103	max_left_plus=0	max_min_left=103	max_min_left_minus=103	max_min_left_plus=0	max_min_right=90	max_min_right_minus=90	max_min_right_plus=0	max_pos_hash_score=396	max_right=199	max_right_minus=199	max_right_plus=0	neg_log10_pos_hash_p_value=6.5	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=NA	pos_hash_score=4	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=17	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=6
JC	5766	.	1	292479	-1	1	292584	-1	0	alignment_overlap=17	coverage_minus=3	coverage_plus=9	flanking_left=251	flanking_right=251	frequency=NA	junction_possible_overlap_registers=197	key=1__292479__-1__1__292601__-1__17____251__251__1__1	max_left=138	max_left_minus=138	max_left_plus=133	max_min_left=108	max_min_left_minus=107	max_min_left_plus=108	max_min_right=111	max_min_right_minus=15	max_min_right_plus=111	max_pos_hash_score=396	max_right=217	max_right_minus=217	max_right_plus=111	neg_log10_pos_hash_p_value=4.7	new_junction_coverage=0.15	new_junction_read_count=12	polymorphism_frequency=NA	pos_hash_score=9	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=17	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=12
JC	5767	.	1	293415	-1	1	293552	-1	0	alignment_overlap=3	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=NA	junction_possible_overlap_registers=211	key=1__293415__-1__1__293555__-1__3____251__251__1__1	max_left=162	max_left_minus=85	max_left_plus=162	max_min_left=115	max_min_left_minus=85	max_min_left_plus=115	max_min_right=86	max_min_right_minus=0	max_min_right_plus=86	max_pos_hash_score=424	max_right=133	max_right_minus=86	max_right_plus=133	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=NA	pos_hash_score=3	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=3	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=3
JC	5768	.	1	303132	-1	1	303196	1	0	alignment_overlap=0	coverage_minus=23	coverage_plus=36	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=214	key=1__303132__-1__1__303196__1__0____251__251__0__0	max_left=233	max_left_minus=233	max_left_plus=230	max_min_left=120	max_min_left_minus=120	max_min_left_plus=100	max_min_right=116	max_min_right_minus=97	max_min_right_plus=116	max_pos_hash_score=430	max_right=229	max_right_minus=226	max_right_plus=229	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.68	new_junction_read_count=60	polymorphism_frequency=1.000e+00	pos_hash_score=46	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=59
JC	5769	.	1	305500	-1	1	305501	1	-3	alignment_overlap=-3	coverage_minus=33	coverage_plus=34	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=211	key=1__305500__-1__1__305501__1__-3__AAT__251__251__0__0	max_left=242	max_left_minus=242	max_left_plus=211	max_min_left=122	max_min_left_minus=108	max_min_left_plus=122	max_min_right=111	max_min_right_minus=111	max_min_right_plus=111	max_pos_hash_score=418	max_right=231	max_right_minus=231	max_right_plus=219	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.78	new_junction_read_count=68	polymorphism_frequency=1.000e+00	pos_hash_score=52	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=3	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=211	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=67	unique_read_sequence=AAT
JC	5770	.	1	307587	1	1	307752	1	0	alignment_overlap=10	coverage_minus=3	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=7.271e-02	junction_possible_overlap_registers=204	key=1__307587__1__1__307742__1__10____251__251__0__0	max_left=97	max_left_minus=97	max_left_plus=97	max_min_left=97	max_min_left_minus=97	max_min_left_plus=97	max_min_right=75	max_min_right_minus=75	max_min_right_plus=45	max_pos_hash_score=410	max_right=117	max_right_minus=117	max_right_plus=117	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=7.271e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.84	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=74	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.68	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=57	side_2_redundant=0	total_non_overlap_reads=5
JC	5771	.	1	314937	1	1	315044	1	0	alignment_overlap=11	coverage_minus=2	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.834e-02	junction_possible_overlap_registers=203	key=1__314937__1__1__315033__1__11____251__251__0__0	max_left=88	max_left_minus=88	max_left_plus=88	max_min_left=88	max_min_left_minus=88	max_min_left_plus=86	max_min_right=70	max_min_right_minus=0	max_min_right_plus=70	max_pos_hash_score=408	max_right=154	max_right_minus=154	max_right_plus=147	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=3.834e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.18	side_1_overlap=11	side_1_possible_overlap_registers=214	side_1_read_count=104	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.22	side_2_overlap=0	side_2_possible_overlap_registers=203	side_2_read_count=102	side_2_redundant=0	total_non_overlap_reads=4
JC	5772	.	1	323830	-1	1	323850	1	0	alignment_overlap=0	coverage_minus=44	coverage_plus=40	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=214	key=1__323830__-1__1__323850__1__0____251__251__0__0	max_left=237	max_left_minus=237	max_left_plus=234	max_min_left=106	max_min_left_minus=106	max_min_left_plus=105	max_min_right=122	max_min_right_minus=122	max_min_right_plus=98	max_pos_hash_score=430	max_right=243	max_right_minus=243	max_right_plus=238	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.96	new_junction_read_count=85	polymorphism_frequency=1.000e+00	pos_hash_score=59	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=84
JC	5773	.	1	380862	1	1	524793	-1	-4	alignment_overlap=-4	coverage_minus=6	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=6.110e-02	junction_possible_overlap_registers=205	key=1__380862__1__1__524793__-1__-4__AAAT__251__251__0__0	max_left=247	max_left_minus=247	max_left_plus=246	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=11	max_min_right_minus=11	max_min_right_plus=4	max_pos_hash_score=412	max_right=11	max_right_minus=11	max_right_plus=4	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=6.110e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=5	side_2_coverage=1.09	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=94	side_2_redundant=0	total_non_overlap_reads=8	unique_read_sequence=AAAT
JC	5774	.	1	380862	1	1	622066	-1	-4	alignment_overlap=-4	coverage_minus=6	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=7.536e-01	junction_possible_overlap_registers=205	key=1__380862__1__1__622066__-1__-4__AAAT__251__251__0__0	max_left=247	max_left_minus=247	max_left_plus=246	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=11	max_min_right_minus=11	max_min_right_plus=4	max_pos_hash_score=412	max_right=11	max_right_minus=11	max_right_plus=4	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=7.536e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=5	side_2_coverage=0.02	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=2	side_2_redundant=0	total_non_overlap_reads=8	unique_read_sequence=AAAT
JC	5775	.	1	380862	1	1	749038	1	0	alignment_overlap=1	coverage_minus=6	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.913e-01	junction_possible_overlap_registers=213	key=1__380862__1__1__749037__1__1____251__251__0__0	max_left=246	max_left_minus=246	max_left_plus=245	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=8	max_pos_hash_score=428	max_right=15	max_right_minus=15	max_right_plus=8	neg_log10_pos_hash_p_value=6.8	new_junction_coverage=0.10	new_junction_read_count=9	polymorphism_frequency=3.913e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=1	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.32	side_2_overlap=0	side_2_possible_overlap_registers=213	side_2_read_count=28	side_2_redundant=0	total_non_overlap_reads=8
JC	5776	.	1	380862	1	1	1458891	-1	-4	alignment_overlap=-4	coverage_minus=6	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=1.648e-01	junction_possible_overlap_registers=205	key=1__380862__1__1__1458891__-1__-4__AAAT__251__251__0__0	max_left=247	max_left_minus=247	max_left_plus=246	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=11	max_min_right_minus=11	max_min_right_plus=4	max_pos_hash_score=412	max_right=11	max_right_minus=11	max_right_plus=4	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=1.648e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=5	side_2_coverage=0.36	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=31	side_2_redundant=0	total_non_overlap_reads=8	unique_read_sequence=AAAT
JC	5777	.	1	380862	1	1	1613869	-1	-4	alignment_overlap=-4	coverage_minus=6	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=2.031e-01	junction_possible_overlap_registers=205	key=1__380862__1__1__1613869__-1__-4__AAAT__251__251__0__0	max_left=247	max_left_minus=247	max_left_plus=246	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=11	max_min_right_minus=11	max_min_right_plus=4	max_pos_hash_score=412	max_right=11	max_right_minus=11	max_right_plus=4	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=2.031e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=5	side_2_coverage=0.28	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=24	side_2_redundant=0	total_non_overlap_reads=8	unique_read_sequence=AAAT
JC	5778	.	1	388275	-1	1	388276	1	-5	alignment_overlap=-5	coverage_minus=40	coverage_plus=48	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=209	key=1__388275__-1__1__388276__1__-5__TCAAT__251__251__0__0	max_left=244	max_left_minus=236	max_left_plus=244	max_min_left=118	max_min_left_minus=118	max_min_left_plus=118	max_min_right=122	max_min_right_minus=121	max_min_right_plus=122	max_pos_hash_score=420	max_right=245	max_right_minus=244	max_right_plus=245	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.04	new_junction_read_count=90	polymorphism_frequency=1.000e+00	pos_hash_score=67	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=88	unique_read_sequence=TCAAT
JC	5779	.	1	395096	1	1	395440	1	0	alignment_overlap=12	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=3.148e-02	junction_possible_overlap_registers=202	key=1__395096__1__1__395428__1__12____251__251__0__0	max_left=147	max_left_minus=147	max_left_plus=85	max_min_left=85	max_min_left_minus=65	max_min_left_plus=85	max_min_right=92	max_min_right_minus=92	max_min_right_plus=0	max_pos_hash_score=406	max_right=154	max_right_minus=101	max_right_plus=154	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.148e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.09	side_1_overlap=12	side_1_possible_overlap_registers=214	side_1_read_count=96	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.13	side_2_overlap=0	side_2_possible_overlap_registers=202	side_2_read_count=94	side_2_redundant=0	total_non_overlap_reads=3
JC	5780	.	1	406641	1	1	406648	-1	-1	alignment_overlap=-1	coverage_minus=31	coverage_plus=35	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=213	key=1__406641__1__1__406648__-1__-1__A__251__251__0__1	max_left=227	max_left_minus=198	max_left_plus=227	max_min_left=106	max_min_left_minus=106	max_min_left_plus=64	max_min_right=123	max_min_right_minus=94	max_min_right_plus=123	max_pos_hash_score=428	max_right=246	max_right_minus=233	max_right_plus=246	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.75	new_junction_read_count=66	polymorphism_frequency=9.707e-01	pos_hash_score=48	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.02	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=2	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=66	unique_read_sequence=A
JC	5781	.	1	417335	-1	1	417729	1	0	alignment_overlap=2	coverage_minus=68	coverage_plus=51	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=212	key=1__417335__-1__1__417727__1__2____251__251__0__0	max_left=247	max_left_minus=244	max_left_plus=247	max_min_left=123	max_min_left_minus=123	max_min_left_plus=110	max_min_right=112	max_min_right_minus=112	max_min_right_plus=90	max_pos_hash_score=426	max_right=248	max_right_minus=243	max_right_plus=248	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.37	new_junction_read_count=120	polymorphism_frequency=1.000e+00	pos_hash_score=78	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=2	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=212	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=119
JC	5782	.	1	425644	1	1	426200	1	0	alignment_overlap=13	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=2.927e-02	junction_possible_overlap_registers=201	key=1__425644__1__1__426187__1__13____251__251__0__0	max_left=81	max_left_minus=81	max_left_plus=43	max_min_left=81	max_min_left_minus=81	max_min_left_plus=43	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=404	max_right=178	max_right_minus=157	max_right_plus=178	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=2.927e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.93	side_1_overlap=13	side_1_possible_overlap_registers=214	side_1_read_count=82	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.47	side_2_overlap=0	side_2_possible_overlap_registers=201	side_2_read_count=122	side_2_redundant=0	total_non_overlap_reads=3
JC	5783	.	1	440008	1	1	736616	1	0	alignment_overlap=14	coverage_minus=43	coverage_plus=27	flanking_left=251	flanking_right=251	frequency=NA	junction_possible_overlap_registers=200	key=1__440008__1__1__736602__1__14____251__251__1__1	max_left=208	max_left_minus=187	max_left_plus=208	max_min_left=111	max_min_left_minus=111	max_min_left_plus=93	max_min_right=105	max_min_right_minus=105	max_min_right_plus=88	max_pos_hash_score=402	max_right=228	max_right_minus=228	max_right_plus=215	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.85	new_junction_read_count=70	polymorphism_frequency=NA	pos_hash_score=52	prediction=unknown	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=14	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=70
JC	5784	.	1	451502	1	1	451498	-1	0	alignment_overlap=8	coverage_minus=42	coverage_plus=52	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=206	key=1__451502__1__1__451506__-1__8____251__251__0__0	max_left=233	max_left_minus=233	max_left_plus=223	max_min_left=121	max_min_left_minus=116	max_min_left_plus=121	max_min_right=114	max_min_right_minus=114	max_min_right_plus=110	max_pos_hash_score=414	max_right=237	max_right_minus=226	max_right_plus=237	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.11	new_junction_read_count=94	polymorphism_frequency=1.000e+00	pos_hash_score=73	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=206	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=94
JC	5785	.	1	455107	-1	1	456717	1	0	alignment_overlap=5	coverage_minus=60	coverage_plus=67	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=209	key=1__455107__-1__1__456712__1__5____251__251__0__0	max_left=241	max_left_minus=232	max_left_plus=241	max_min_left=113	max_min_left_minus=91	max_min_left_plus=113	max_min_right=119	max_min_right_minus=119	max_min_right_plus=110	max_pos_hash_score=420	max_right=243	max_right_minus=227	max_right_plus=243	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.47	new_junction_read_count=127	polymorphism_frequency=1.000e+00	pos_hash_score=80	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=5	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=127
JC	5786	.	1	457671	-1	1	524883	-1	-101	alignment_overlap=-101	coverage_minus=4	coverage_plus=22	flanking_left=251	flanking_right=251	frequency=7.952e-01	junction_possible_overlap_registers=113	key=1__457671__-1__1__524883__-1__-101__CCCGTTTCAGTTTTTTAAAGGCTTGTGGTGAAAAGTCACTTGTTTCAGCCACTTCAATCTGCGTTCTTTTCATTTGGGGTTTCAGAATTTTGGAGGTTTTA__251__251__0__0	max_left=142	max_left_minus=137	max_left_plus=142	max_min_left=69	max_min_left_minus=63	max_min_left_plus=69	max_min_right=72	max_min_right_minus=32	max_min_right_plus=72	max_pos_hash_score=228	max_right=143	max_right_minus=95	max_right_plus=143	neg_log10_pos_hash_p_value=1.0	new_junction_coverage=0.88	new_junction_read_count=41	polymorphism_frequency=7.952e-01	pos_hash_score=19	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.45	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=40	side_2_redundant=0	total_non_overlap_reads=26	unique_read_sequence=CCCGTTTCAGTTTTTTAAAGGCTTGTGGTGAAAAGTCACTTGTTTCAGCCACTTCAATCTGCGTTCTTTTCATTTGGGGTTTCAGAATTTTGGAGGTTTTA
JC	5787	.	1	486482	-1	1	486483	1	-11	alignment_overlap=-11	coverage_minus=12	coverage_plus=8	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=203	key=1__486482__-1__1__486483__1__-11__TAATTAGCAGA__251__251__0__0	max_left=239	max_left_minus=238	max_left_plus=239	max_min_left=107	max_min_left_minus=97	max_min_left_plus=107	max_min_right=119	max_min_right_minus=86	max_min_right_plus=119	max_pos_hash_score=400	max_right=236	max_right_minus=236	max_right_plus=149	neg_log10_pos_hash_p_value=3.1	new_junction_coverage=0.18	new_junction_read_count=15	polymorphism_frequency=8.868e-01	pos_hash_score=16	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=4	side_1_coverage=0.02	side_1_overlap=0	side_1_possible_overlap_registers=210	side_1_read_count=2	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.02	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=2	side_2_redundant=0	total_non_overlap_reads=20	unique_read_sequence=TAATTAGCAGA
JC	5788	.	1	501334	-1	1	501359	1	0	alignment_overlap=9	coverage_minus=49	coverage_plus=33	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=205	key=1__501334__-1__1__501350__1__9____251__251__0__0	max_left=239	max_left_minus=239	max_left_plus=237	max_min_left=118	max_min_left_minus=118	max_min_left_plus=110	max_min_right=117	max_min_right_minus=115	max_min_right_plus=117	max_pos_hash_score=412	max_right=235	max_right_minus=235	max_right_plus=226	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.98	new_junction_read_count=83	polymorphism_frequency=1.000e+00	pos_hash_score=58	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=9	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=82
JC	5789	.	1	513376	-1	1	513641	-1	0	alignment_overlap=8	coverage_minus=1	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=2.646e-02	junction_possible_overlap_registers=206	key=1__513376__-1__1__513649__-1__8____251__251__0__0	max_left=196	max_left_minus=196	max_left_plus=195	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=82	max_min_right_minus=46	max_min_right_plus=82	max_pos_hash_score=414	max_right=82	max_right_minus=46	max_right_plus=82	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=2.646e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.72	side_1_overlap=8	side_1_possible_overlap_registers=214	side_1_read_count=152	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.74	side_2_overlap=0	side_2_possible_overlap_registers=206	side_2_read_count=148	side_2_redundant=0	total_non_overlap_reads=4
JC	5790	.	1	522978	-1	1	524441	1	0	alignment_overlap=7	coverage_minus=54	coverage_plus=45	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=207	key=1__522978__-1__1__524434__1__7____251__251__0__0	max_left=231	max_left_minus=228	max_left_plus=231	max_min_left=121	max_min_left_minus=111	max_min_left_plus=121	max_min_right=116	max_min_right_minus=116	max_min_right_plus=115	max_pos_hash_score=416	max_right=242	max_right_minus=242	max_right_plus=233	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.16	new_junction_read_count=99	polymorphism_frequency=1.000e+00	pos_hash_score=66	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=7	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=207	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=99
JC	5791	.	1	524688	1	1	621961	-1	-5	alignment_overlap=-5	coverage_minus=18	coverage_plus=23	flanking_left=251	flanking_right=251	frequency=4.771e-01	junction_possible_overlap_registers=203	key=1__524688__1__1__621961__-1__-5__TGTCC__251__251__0__0	max_left=234	max_left_minus=212	max_left_plus=234	max_min_left=89	max_min_left_minus=89	max_min_left_plus=88	max_min_right=120	max_min_right_minus=102	max_min_right_plus=120	max_pos_hash_score=408	max_right=180	max_right_minus=179	max_right_plus=180	neg_log10_pos_hash_p_value=1.7	new_junction_coverage=0.50	new_junction_read_count=42	polymorphism_frequency=4.771e-01	pos_hash_score=27	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.08	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=95	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=6	side_2_coverage=0.02	side_2_overlap=0	side_2_possible_overlap_registers=208	side_2_read_count=2	side_2_redundant=0	total_non_overlap_reads=41	unique_read_sequence=TGTCC
JC	5792	.	1	535190	-1	1	535195	1	0	alignment_overlap=0	coverage_minus=74	coverage_plus=91	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=214	key=1__535190__-1__1__535195__1__0____251__251__0__0	max_left=250	max_left_minus=250	max_left_plus=247	max_min_left=125	max_min_left_minus=125	max_min_left_plus=119	max_min_right=122	max_min_right_minus=122	max_min_right_plus=122	max_pos_hash_score=430	max_right=249	max_right_minus=249	max_right_plus=240	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.88	new_junction_read_count=166	polymorphism_frequency=1.000e+00	pos_hash_score=86	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=165
JC	5793	.	1	572179	-1	1	572180	1	-5	alignment_overlap=-5	coverage_minus=59	coverage_plus=44	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=209	key=1__572179__-1__1__572180__1__-5__ATTTT__251__251__0__0	max_left=242	max_left_minus=230	max_left_plus=242	max_min_left=116	max_min_left_minus=112	max_min_left_plus=116	max_min_right=122	max_min_right_minus=113	max_min_right_plus=122	max_pos_hash_score=404	max_right=244	max_right_minus=244	max_right_plus=220	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.23	new_junction_read_count=106	polymorphism_frequency=1.000e+00	pos_hash_score=69	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=8	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=206	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=103	unique_read_sequence=ATTTT
JC	5794	.	1	578071	1	1	578199	1	0	alignment_overlap=5	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=2.139e-02	junction_possible_overlap_registers=209	key=1__578071__1__1__578194__1__5____251__251__0__0	max_left=117	max_left_minus=117	max_left_plus=73	max_min_left=117	max_min_left_minus=117	max_min_left_plus=73	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=420	max_right=173	max_right_minus=129	max_right_plus=173	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.139e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.70	side_1_overlap=5	side_1_possible_overlap_registers=214	side_1_read_count=150	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.49	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=128	side_2_redundant=0	total_non_overlap_reads=3
JC	5795	.	1	601174	-1	1	603089	1	0	alignment_overlap=5	coverage_minus=27	coverage_plus=52	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=209	key=1__601174__-1__1__603084__1__5____251__251__0__0	max_left=240	max_left_minus=237	max_left_plus=240	max_min_left=94	max_min_left_minus=59	max_min_left_plus=94	max_min_right=121	max_min_right_minus=107	max_min_right_plus=121	max_pos_hash_score=420	max_right=241	max_right_minus=237	max_right_plus=241	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.92	new_junction_read_count=79	polymorphism_frequency=1.000e+00	pos_hash_score=57	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=5	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=79
JC	5796	.	1	601175	1	1	1514988	1	0	alignment_overlap=0	coverage_minus=38	coverage_plus=39	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=214	key=1__601175__1__1__1514988__1__0____251__251__0__0	max_left=247	max_left_minus=201	max_left_plus=247	max_min_left=119	max_min_left_minus=93	max_min_left_plus=119	max_min_right=119	max_min_right_minus=113	max_min_right_plus=119	max_pos_hash_score=430	max_right=245	max_right_minus=245	max_right_plus=229	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.88	new_junction_read_count=78	polymorphism_frequency=9.689e-01	pos_hash_score=56	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.06	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=5	side_2_redundant=0	total_non_overlap_reads=77
JC	5797	.	1	601439	-1	1	1204880	1	-65	alignment_overlap=-65	coverage_minus=11	coverage_plus=13	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=149	key=1__601439__-1__1__1204880__1__-65__GCACGACTTGCCCGATGATTTGCAGGTTTTCGGCTTCAGCTTGGGTTAGTTGGATTGGTGGATAT__251__251__0__0	max_left=181	max_left_minus=181	max_left_plus=178	max_min_left=2	max_min_left_minus=2	max_min_left_plus=0	max_min_right=74	max_min_right_minus=74	max_min_right_plus=70	max_pos_hash_score=300	max_right=113	max_right_minus=113	max_right_plus=70	neg_log10_pos_hash_p_value=1.8	new_junction_coverage=0.63	new_junction_read_count=39	polymorphism_frequency=1.000e+00	pos_hash_score=18	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=24	unique_read_sequence=GCACGACTTGCCCGATGATTTGCAGGTTTTCGGCTTCAGCTTGGGTTAGTTGGATTGGTGGATAT
JC	5798	.	1	602728	-1	1	602729	1	-6	alignment_overlap=-6	coverage_minus=23	coverage_plus=30	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=208	key=1__602728__-1__1__602729__1__-6__TGGCGG__251__251__0__0	max_left=191	max_left_minus=191	max_left_plus=180	max_min_left=119	max_min_left_minus=103	max_min_left_plus=119	max_min_right=122	max_min_right_minus=121	max_min_right_plus=122	max_pos_hash_score=416	max_right=233	max_right_minus=233	max_right_plus=227	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=0.76	new_junction_read_count=65	polymorphism_frequency=8.164e-01	pos_hash_score=43	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=1	side_1_coverage=0.17	side_1_overlap=0	side_1_possible_overlap_registers=213	side_1_read_count=15	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.17	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=15	side_2_redundant=0	total_non_overlap_reads=53	unique_read_sequence=TGGCGG
JC	5799	.	1	614246	-1	1	615033	-1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=3.328e-02	junction_possible_overlap_registers=204	key=1__614246__-1__1__615043__-1__10____251__251__0__0	max_left=138	max_left_minus=138	max_left_plus=70	max_min_left=70	max_min_left_minus=70	max_min_left_plus=70	max_min_right=103	max_min_right_minus=103	max_min_right_plus=0	max_pos_hash_score=410	max_right=146	max_right_minus=146	max_right_plus=142	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.328e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.91	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=80	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.16	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=98	side_2_redundant=0	total_non_overlap_reads=3
JC	5800	.	1	641311	1	1	641427	1	0	alignment_overlap=7	coverage_minus=3	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=3.968e-02	junction_possible_overlap_registers=207	key=1__641311__1__1__641420__1__7____251__251__0__0	max_left=103	max_left_minus=103	max_left_plus=77	max_min_left=103	max_min_left_minus=103	max_min_left_plus=77	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=416	max_right=166	max_right_minus=155	max_right_plus=166	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=3.968e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.18	side_1_overlap=7	side_1_possible_overlap_registers=214	side_1_read_count=104	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.09	side_2_overlap=0	side_2_possible_overlap_registers=207	side_2_read_count=93	side_2_redundant=0	total_non_overlap_reads=4
JC	5801	.	1	652190	-1	1	654295	-1	0	alignment_overlap=2	coverage_minus=51	coverage_plus=44	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=212	key=1__652190__-1__1__654297__-1__2____251__251__0__0	max_left=228	max_left_minus=224	max_left_plus=228	max_min_left=121	max_min_left_minus=121	max_min_left_plus=106	max_min_right=112	max_min_right_minus=110	max_min_right_plus=112	max_pos_hash_score=426	max_right=224	max_right_minus=203	max_right_plus=224	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.10	new_junction_read_count=96	polymorphism_frequency=9.749e-01	pos_hash_score=62	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.06	side_1_overlap=2	side_1_possible_overlap_registers=214	side_1_read_count=5	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=212	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=95
JC	5802	.	1	675101	-1	1	675587	-1	0	alignment_overlap=5	coverage_minus=2	coverage_plus=7	flanking_left=251	flanking_right=251	frequency=7.278e-02	junction_possible_overlap_registers=209	key=1__675101__-1__1__675592__-1__5____251__251__0__0	max_left=206	max_left_minus=206	max_left_plus=171	max_min_left=57	max_min_left_minus=0	max_min_left_plus=57	max_min_right=100	max_min_right_minus=72	max_min_right_plus=100	max_pos_hash_score=420	max_right=100	max_right_minus=72	max_right_plus=100	neg_log10_pos_hash_p_value=6.8	new_junction_coverage=0.10	new_junction_read_count=9	polymorphism_frequency=7.278e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.30	side_1_overlap=5	side_1_possible_overlap_registers=214	side_1_read_count=115	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.36	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=117	side_2_redundant=0	total_non_overlap_reads=9
JC	5803	.	1	675857	1	1	675840	-1	0	alignment_overlap=17	coverage_minus=38	coverage_plus=32	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=197	key=1__675857__1__1__675857__-1__17____251__251__0__0	max_left=233	max_left_minus=233	max_left_plus=230	max_min_left=101	max_min_left_minus=101	max_min_left_plus=78	max_min_right=116	max_min_right_minus=94	max_min_right_plus=116	max_pos_hash_score=396	max_right=233	max_right_minus=219	max_right_plus=233	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.94	new_junction_read_count=76	polymorphism_frequency=1.000e+00	pos_hash_score=49	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=17	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=70
JC	5804	.	1	695527	1	1	695904	1	0	alignment_overlap=4	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=2.443e-02	junction_possible_overlap_registers=210	key=1__695527__1__1__695900__1__4____251__251__0__0	max_left=228	max_left_minus=194	max_left_plus=228	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=88	max_min_right_minus=88	max_min_right_plus=19	max_pos_hash_score=422	max_right=88	max_right_minus=88	max_right_plus=19	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.443e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.46	side_1_overlap=4	side_1_possible_overlap_registers=214	side_1_read_count=129	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.30	side_2_overlap=0	side_2_possible_overlap_registers=210	side_2_read_count=113	side_2_redundant=0	total_non_overlap_reads=3
JC	5805	.	1	727447	-1	1	727769	-1	0	alignment_overlap=9	coverage_minus=2	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=5.165e-02	junction_possible_overlap_registers=205	key=1__727447__-1__1__727778__-1__9____251__251__0__0	max_left=129	max_left_minus=129	max_left_plus=122	max_min_left=38	max_min_left_minus=38	max_min_left_plus=0	max_min_right=120	max_min_right_minus=113	max_min_right_plus=120	max_pos_hash_score=412	max_right=120	max_right_minus=120	max_right_plus=120	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=5.165e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.84	side_1_overlap=9	side_1_possible_overlap_registers=214	side_1_read_count=74	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.90	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=76	side_2_redundant=0	total_non_overlap_reads=4
JC	5806	.	1	751301	-1	1	751618	-1	0	alignment_overlap=9	coverage_minus=2	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.492e-02	junction_possible_overlap_registers=205	key=1__751301__-1__1__751627__-1__9____251__251__0__0	max_left=136	max_left_minus=136	max_left_plus=130	max_min_left=79	max_min_left_minus=58	max_min_left_plus=79	max_min_right=111	max_min_right_minus=106	max_min_right_plus=111	max_pos_hash_score=412	max_right=183	max_right_minus=183	max_right_plus=163	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=3.492e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.31	side_1_overlap=9	side_1_possible_overlap_registers=214	side_1_read_count=116	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.30	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=110	side_2_redundant=0	total_non_overlap_reads=4
JC	5807	.	1	761037	1	1	761032	-1	0	alignment_overlap=5	coverage_minus=47	coverage_plus=46	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=209	key=1__761037__1__1__761037__-1__5____251__251__0__0	max_left=243	max_left_minus=206	max_left_plus=243	max_min_left=121	max_min_left_minus=121	max_min_left_plus=121	max_min_right=120	max_min_right_minus=114	max_min_right_plus=120	max_pos_hash_score=420	max_right=245	max_right_minus=236	max_right_plus=245	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=1.09	new_junction_read_count=94	polymorphism_frequency=1.000e+00	pos_hash_score=55	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=5	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=93
JC	5808	.	1	766931	1	1	767274	1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=6.051e-02	junction_possible_overlap_registers=204	key=1__766931__1__1__767264__1__10____251__251__0__0	max_left=195	max_left_minus=195	max_left_plus=169	max_min_left=32	max_min_left_minus=0	max_min_left_plus=32	max_min_right=72	max_min_right_minus=64	max_min_right_plus=72	max_pos_hash_score=410	max_right=213	max_right_minus=64	max_right_plus=213	neg_log10_pos_hash_p_value=6.2	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=6.051e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.90	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=79	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.32	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=111	side_2_redundant=0	total_non_overlap_reads=5
JC	5809	.	1	788402	-1	1	788485	-1	0	alignment_overlap=8	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.992e-02	junction_possible_overlap_registers=206	key=1__788402__-1__1__788493__-1__8____251__251__0__0	max_left=166	max_left_minus=109	max_left_plus=166	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=77	max_min_right_minus=24	max_min_right_plus=77	max_pos_hash_score=414	max_right=77	max_right_minus=24	max_right_plus=77	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.992e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.82	side_1_overlap=8	side_1_possible_overlap_registers=214	side_1_read_count=72	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.88	side_2_overlap=0	side_2_possible_overlap_registers=206	side_2_read_count=75	side_2_redundant=0	total_non_overlap_reads=3
JC	5810	.	1	838716	1	1	839294	1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=5.817e-02	junction_possible_overlap_registers=204	key=1__838716__1__1__839284__1__10____251__251__0__0	max_left=130	max_left_minus=130	max_left_plus=105	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=111	max_min_right_minus=111	max_min_right_plus=104	max_pos_hash_score=410	max_right=111	max_right_minus=111	max_right_plus=104	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=5.817e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.60	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=53	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.94	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=79	side_2_redundant=0	total_non_overlap_reads=4
JC	5811	.	1	846493	-1	1	846570	1	-57	alignment_overlap=-57	coverage_minus=39	coverage_plus=24	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=157	key=1__846493__-1__1__846570__1__-57__GATATTTCTGATATTTCTGTTGATATGCGTCGAAATGAAAGGAATTAGGATGAATAA__251__251__0__0	max_left=191	max_left_minus=182	max_left_plus=191	max_min_left=92	max_min_left_minus=88	max_min_left_plus=92	max_min_right=92	max_min_right_minus=92	max_min_right_plus=92	max_pos_hash_score=278	max_right=187	max_right_minus=187	max_right_plus=181	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.83	new_junction_read_count=54	polymorphism_frequency=1.000e+00	pos_hash_score=39	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=19	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=195	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=63	unique_read_sequence=GATATTTCTGATATTTCTGTTGATATGCGTCGAAATGAAAGGAATTAGGATGAATAA
JC	5812	.	1	849999	-1	1	850565	-1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=4.217e-02	junction_possible_overlap_registers=204	key=1__849999__-1__1__850575__-1__10____251__251__0__0	max_left=198	max_left_minus=198	max_left_plus=140	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=77	max_min_right_minus=77	max_min_right_plus=77	max_pos_hash_score=410	max_right=77	max_right_minus=77	max_right_plus=77	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=4.217e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.14	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=101	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.48	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=40	side_2_redundant=0	total_non_overlap_reads=3
JC	5813	.	1	882078	-1	1	882079	1	-6	alignment_overlap=-6	coverage_minus=18	coverage_plus=9	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=208	key=1__882078__-1__1__882079__1__-6__TAAAGG__251__251__0__0	max_left=193	max_left_minus=164	max_left_plus=193	max_min_left=109	max_min_left_minus=77	max_min_left_plus=109	max_min_right=99	max_min_right_minus=99	max_min_right_plus=52	max_pos_hash_score=410	max_right=233	max_right_minus=233	max_right_plus=202	neg_log10_pos_hash_p_value=2.4	new_junction_coverage=0.35	new_junction_read_count=30	polymorphism_frequency=1.000e+00	pos_hash_score=21	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=4	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=210	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=27	unique_read_sequence=TAAAGG
JC	5814	.	1	895342	-1	1	895346	1	0	alignment_overlap=1	coverage_minus=29	coverage_plus=12	flanking_left=251	flanking_right=251	frequency=7.616e-01	junction_possible_overlap_registers=213	key=1__895342__-1__1__895345__1__1____251__251__0__0	max_left=239	max_left_minus=239	max_left_plus=188	max_min_left=94	max_min_left_minus=94	max_min_left_plus=94	max_min_right=110	max_min_right_minus=90	max_min_right_plus=110	max_pos_hash_score=428	max_right=163	max_right_minus=163	max_right_plus=149	neg_log10_pos_hash_p_value=1.3	new_junction_coverage=0.58	new_junction_read_count=51	polymorphism_frequency=7.616e-01	pos_hash_score=33	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.18	side_1_overlap=1	side_1_possible_overlap_registers=214	side_1_read_count=16	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.18	side_2_overlap=0	side_2_possible_overlap_registers=213	side_2_read_count=16	side_2_redundant=0	total_non_overlap_reads=41
JC	5815	.	1	908243	-1	1	908377	-1	0	alignment_overlap=6	coverage_minus=1	coverage_plus=4	flanking_left=251	flanking_right=251	frequency=4.390e-02	junction_possible_overlap_registers=208	key=1__908243__-1__1__908383__-1__6____251__251__0__0	max_left=198	max_left_minus=74	max_left_plus=198	max_min_left=109	max_min_left_minus=74	max_min_left_plus=109	max_min_right=57	max_min_right_minus=0	max_min_right_plus=57	max_pos_hash_score=418	max_right=136	max_right_minus=136	max_right_plus=136	neg_log10_pos_hash_p_value=6.3	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=4.390e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.30	side_1_overlap=6	side_1_possible_overlap_registers=214	side_1_read_count=115	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.24	side_2_overlap=0	side_2_possible_overlap_registers=208	side_2_read_count=106	side_2_redundant=0	total_non_overlap_reads=5
JC	5816	.	1	925238	-1	1	925239	1	-9	alignment_overlap=-9	coverage_minus=41	coverage_plus=63	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=205	key=1__925238__-1__1__925239__1__-9__GAGAACAAA__251__251__0__0	max_left=235	max_left_minus=235	max_left_plus=235	max_min_left=119	max_min_left_minus=111	max_min_left_plus=119	max_min_right=121	max_min_right_minus=94	max_min_right_plus=121	max_pos_hash_score=394	max_right=234	max_right_minus=205	max_right_plus=234	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.24	new_junction_read_count=105	polymorphism_frequency=1.000e+00	pos_hash_score=67	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=9	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=205	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=104	unique_read_sequence=GAGAACAAA
JC	5817	.	1	931543	1	1	931893	1	0	alignment_overlap=11	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.567e-02	junction_possible_overlap_registers=203	key=1__931543__1__1__931882__1__11____251__251__0__0	max_left=204	max_left_minus=204	max_left_plus=179	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=111	max_min_right_minus=36	max_min_right_plus=111	max_pos_hash_score=408	max_right=111	max_right_minus=36	max_right_plus=111	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.567e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.05	side_1_overlap=11	side_1_possible_overlap_registers=214	side_1_read_count=93	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.88	side_2_overlap=0	side_2_possible_overlap_registers=203	side_2_read_count=74	side_2_redundant=0	total_non_overlap_reads=3
JC	5818	.	1	939000	-1	1	939073	-1	0	alignment_overlap=9	coverage_minus=2	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=6.173e-02	junction_possible_overlap_registers=205	key=1__939000__-1__1__939082__-1__9____251__251__0__0	max_left=176	max_left_minus=176	max_left_plus=169	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=73	max_min_right_minus=73	max_min_right_plus=73	max_pos_hash_score=412	max_right=73	max_right_minus=73	max_right_plus=73	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=6.173e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.08	side_1_overlap=9	side_1_possible_overlap_registers=214	side_1_read_count=95	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.72	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=61	side_2_redundant=0	total_non_overlap_reads=5
JC	5819	.	1	954873	-1	1	956523	1	0	alignment_overlap=10	coverage_minus=38	coverage_plus=37	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=204	key=1__954873__-1__1__956513__1__10____251__251__0__0	max_left=235	max_left_minus=235	max_left_plus=234	max_min_left=117	max_min_left_minus=117	max_min_left_plus=116	max_min_right=115	max_min_right_minus=115	max_min_right_plus=107	max_pos_hash_score=410	max_right=228	max_right_minus=218	max_right_plus=228	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.89	new_junction_read_count=75	polymorphism_frequency=1.000e+00	pos_hash_score=54	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=75
JC	5820	.	1	967648	-1	1	969514	1	0	alignment_overlap=3	coverage_minus=57	coverage_plus=45	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=211	key=1__967648__-1__1__969511__1__3____251__251__0__0	max_left=226	max_left_minus=226	max_left_plus=226	max_min_left=123	max_min_left_minus=123	max_min_left_plus=116	max_min_right=121	max_min_right_minus=117	max_min_right_plus=121	max_pos_hash_score=424	max_right=246	max_right_minus=231	max_right_plus=246	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.17	new_junction_read_count=102	polymorphism_frequency=1.000e+00	pos_hash_score=65	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=3	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=211	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=102
JC	5821	.	1	1004981	-1	1	1004982	1	-9	alignment_overlap=-9	coverage_minus=43	coverage_plus=56	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=205	key=1__1004981__-1__1__1004982__1__-9__TACTTCGTG__251__251__0__0	max_left=236	max_left_minus=232	max_left_plus=236	max_min_left=110	max_min_left_minus=105	max_min_left_plus=110	max_min_right=118	max_min_right_minus=109	max_min_right_plus=118	max_pos_hash_score=396	max_right=238	max_right_minus=238	max_right_plus=234	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.16	new_junction_read_count=98	polymorphism_frequency=1.000e+00	pos_hash_score=59	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=8	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=206	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=99	unique_read_sequence=TACTTCGTG
JC	5822	.	1	1032839	-1	1	1034089	1	0	alignment_overlap=2	coverage_minus=31	coverage_plus=55	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=212	key=1__1032839__-1__1__1034087__1__2____251__251__0__0	max_left=246	max_left_minus=243	max_left_plus=246	max_min_left=115	max_min_left_minus=115	max_min_left_plus=91	max_min_right=112	max_min_right_minus=98	max_min_right_plus=112	max_pos_hash_score=426	max_right=246	max_right_minus=246	max_right_plus=242	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=1.00	new_junction_read_count=87	polymorphism_frequency=1.000e+00	pos_hash_score=56	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=2	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=212	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=86
JC	5823	.	1	1144530	-1	1	1144534	-1	0	alignment_overlap=13	coverage_minus=3	coverage_plus=0	flanking_left=251	flanking_right=251	frequency=4.295e-02	junction_possible_overlap_registers=201	key=1__1144530__-1__1__1144547__-1__13____251__251__0__0	max_left=123	max_left_minus=123	max_left_plus=0	max_min_left=75	max_min_left_minus=75	max_min_left_plus=0	max_min_right=114	max_min_right_minus=114	max_min_right_plus=0	max_pos_hash_score=404	max_right=237	max_right_minus=237	max_right_plus=0	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=4.295e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.80	side_1_overlap=13	side_1_possible_overlap_registers=214	side_1_read_count=71	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.81	side_2_overlap=0	side_2_possible_overlap_registers=201	side_2_read_count=67	side_2_redundant=0	total_non_overlap_reads=3
JC	5824	.	1	1162124	-1	1	1162474	-1	0	alignment_overlap=6	coverage_minus=0	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=3.350e-02	junction_possible_overlap_registers=208	key=1__1162124__-1__1__1162480__-1__6____251__251__0__0	max_left=170	max_left_minus=0	max_left_plus=170	max_min_left=84	max_min_left_minus=0	max_min_left_plus=84	max_min_right=75	max_min_right_minus=0	max_min_right_plus=75	max_pos_hash_score=418	max_right=239	max_right_minus=0	max_right_plus=239	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=3.350e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.17	side_1_overlap=6	side_1_possible_overlap_registers=214	side_1_read_count=103	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.85	side_2_overlap=0	side_2_possible_overlap_registers=208	side_2_read_count=73	side_2_redundant=0	total_non_overlap_reads=3
JC	5825	.	1	1170182	1	1	1170476	1	0	alignment_overlap=9	coverage_minus=2	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=4.281e-02	junction_possible_overlap_registers=205	key=1__1170182__1__1__1170467__1__9____251__251__0__0	max_left=174	max_left_minus=174	max_left_plus=110	max_min_left=96	max_min_left_minus=18	max_min_left_plus=96	max_min_right=67	max_min_right_minus=67	max_min_right_plus=44	max_pos_hash_score=412	max_right=146	max_right_minus=108	max_right_plus=146	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=4.281e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.11	side_1_overlap=9	side_1_possible_overlap_registers=214	side_1_read_count=98	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.01	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=85	side_2_redundant=0	total_non_overlap_reads=4
JC	5826	.	1	1173408	1	1	1173366	-1	0	alignment_overlap=43	coverage_minus=34	coverage_plus=28	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=171	key=1__1173408__1__1__1173409__-1__43____251__251__0__0	max_left=206	max_left_minus=200	max_left_plus=206	max_min_left=103	max_min_left_minus=96	max_min_left_plus=103	max_min_right=92	max_min_right_minus=91	max_min_right_plus=92	max_pos_hash_score=344	max_right=204	max_right_minus=204	max_right_plus=189	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.88	new_junction_read_count=62	polymorphism_frequency=1.000e+00	pos_hash_score=47	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=43	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=171	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=62
JC	5827	.	1	1229582	-1	1	1229834	-1	0	alignment_overlap=4	coverage_minus=3	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=5.282e-02	junction_possible_overlap_registers=210	key=1__1229582__-1__1__1229838__-1__4____251__251__0__0	max_left=241	max_left_minus=241	max_left_plus=96	max_min_left=97	max_min_left_minus=97	max_min_left_plus=96	max_min_right=18	max_min_right_minus=18	max_min_right_plus=0	max_pos_hash_score=422	max_right=163	max_right_minus=149	max_right_plus=163	neg_log10_pos_hash_p_value=6.3	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=5.282e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.01	side_1_overlap=4	side_1_possible_overlap_registers=214	side_1_read_count=89	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.06	side_2_overlap=0	side_2_possible_overlap_registers=210	side_2_read_count=92	side_2_redundant=0	total_non_overlap_reads=5
JC	5828	.	1	1232244	1	1	1232631	1	0	alignment_overlap=9	coverage_minus=3	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=5.748e-02	junction_possible_overlap_registers=205	key=1__1232244__1__1__1232622__1__9____251__251__0__0	max_left=210	max_left_minus=210	max_left_plus=165	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=110	max_min_right_minus=110	max_min_right_plus=86	max_pos_hash_score=412	max_right=110	max_right_minus=110	max_right_plus=86	neg_log10_pos_hash_p_value=6.2	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=5.748e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.14	side_1_overlap=9	side_1_possible_overlap_registers=214	side_1_read_count=101	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.18	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=100	side_2_redundant=0	total_non_overlap_reads=6
JC	5829	.	1	1261663	1	1	1262355	1	0	alignment_overlap=7	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.005e-02	junction_possible_overlap_registers=207	key=1__1261663__1__1__1262348__1__7____251__251__0__0	max_left=156	max_left_minus=156	max_left_plus=70	max_min_left=70	max_min_left_minus=0	max_min_left_plus=70	max_min_right=88	max_min_right_minus=88	max_min_right_plus=0	max_pos_hash_score=416	max_right=195	max_right_minus=88	max_right_plus=195	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.005e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.14	side_1_overlap=7	side_1_possible_overlap_registers=214	side_1_read_count=101	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.12	side_2_overlap=0	side_2_possible_overlap_registers=207	side_2_read_count=96	side_2_redundant=0	total_non_overlap_reads=3
JC	5830	.	1	1271785	1	1	1272031	1	0	alignment_overlap=11	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.238e-02	junction_possible_overlap_registers=203	key=1__1271785__1__1__1272020__1__11____251__251__0__0	max_left=170	max_left_minus=170	max_left_plus=170	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=83	max_min_right_minus=69	max_min_right_plus=83	max_pos_hash_score=408	max_right=83	max_right_minus=69	max_right_plus=83	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.238e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.04	side_1_overlap=11	side_1_possible_overlap_registers=214	side_1_read_count=92	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.10	side_2_overlap=0	side_2_possible_overlap_registers=203	side_2_read_count=92	side_2_redundant=0	total_non_overlap_reads=3
JC	5831	.	1	1277991	1	1	1278118	1	0	alignment_overlap=5	coverage_minus=6	coverage_plus=0	flanking_left=251	flanking_right=251	frequency=5.864e-02	junction_possible_overlap_registers=209	key=1__1277991__1__1__1278113__1__5____251__251__0__0	max_left=119	max_left_minus=119	max_left_plus=0	max_min_left=117	max_min_left_minus=117	max_min_left_plus=0	max_min_right=59	max_min_right_minus=59	max_min_right_plus=0	max_pos_hash_score=420	max_right=129	max_right_minus=129	max_right_plus=0	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=5.864e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.14	side_1_overlap=5	side_1_possible_overlap_registers=214	side_1_read_count=101	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.09	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=94	side_2_redundant=0	total_non_overlap_reads=6
JC	5832	.	1	1277995	-1	1	1278112	-1	0	alignment_overlap=5	coverage_minus=2	coverage_plus=4	flanking_left=251	flanking_right=251	frequency=5.754e-02	junction_possible_overlap_registers=209	key=1__1277995__-1__1__1278117__-1__5____251__251__0__0	max_left=164	max_left_minus=124	max_left_plus=164	max_min_left=63	max_min_left_minus=58	max_min_left_plus=63	max_min_right=119	max_min_right_minus=119	max_min_right_plus=119	max_pos_hash_score=420	max_right=119	max_right_minus=119	max_right_plus=119	neg_log10_pos_hash_p_value=6.8	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=5.754e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.19	side_1_overlap=5	side_1_possible_overlap_registers=214	side_1_read_count=105	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.09	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=94	side_2_redundant=0	total_non_overlap_reads=6
JC	5833	.	1	1278403	1	1	1278805	1	0	alignment_overlap=6	coverage_minus=6	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=6.811e-02	junction_possible_overlap_registers=208	key=1__1278403__1__1__1278799__1__6____251__251__0__0	max_left=239	max_left_minus=239	max_left_plus=164	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=65	max_min_right_minus=65	max_min_right_plus=1	max_pos_hash_score=418	max_right=65	max_right_minus=65	max_right_plus=1	neg_log10_pos_hash_p_value=6.3	new_junction_coverage=0.08	new_junction_read_count=7	polymorphism_frequency=6.811e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.99	side_1_overlap=6	side_1_possible_overlap_registers=214	side_1_read_count=87	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.25	side_2_overlap=0	side_2_possible_overlap_registers=208	side_2_read_count=107	side_2_redundant=0	total_non_overlap_reads=7
JC	5834	.	1	1296454	-1	1	1297382	-1	0	alignment_overlap=3	coverage_minus=28	coverage_plus=27	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=211	key=1__1296454__-1__1__1297385__-1__3____251__251__0__0	max_left=215	max_left_minus=172	max_left_plus=215	max_min_left=118	max_min_left_minus=118	max_min_left_plus=116	max_min_right=120	max_min_right_minus=119	max_min_right_plus=120	max_pos_hash_score=424	max_right=237	max_right_minus=233	max_right_plus=237	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=0.66	new_junction_read_count=57	polymorphism_frequency=1.000e+00	pos_hash_score=43	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=3	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=211	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=55
JC	5835	.	1	1298542	-1	1	1299211	1	-3	alignment_overlap=-3	coverage_minus=3	coverage_plus=5	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=211	key=1__1298542__-1__1__1299211__1__-3__CGA__251__251__0__0	max_left=80	max_left_minus=40	max_left_plus=80	max_min_left=56	max_min_left_minus=40	max_min_left_plus=56	max_min_right=50	max_min_right_minus=21	max_min_right_plus=50	max_pos_hash_score=424	max_right=208	max_right_minus=208	max_right_plus=64	neg_log10_pos_hash_p_value=5.6	new_junction_coverage=0.11	new_junction_read_count=10	polymorphism_frequency=1.000e+00	pos_hash_score=7	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=8	unique_read_sequence=CGA
JC	5836	.	1	1311569	1	1	1311548	-1	0	alignment_overlap=29	coverage_minus=18	coverage_plus=32	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=185	key=1__1311569__1__1__1311577__-1__29____251__251__0__0	max_left=186	max_left_minus=186	max_left_plus=186	max_min_left=109	max_min_left_minus=54	max_min_left_plus=109	max_min_right=101	max_min_right_minus=76	max_min_right_plus=101	max_pos_hash_score=372	max_right=216	max_right_minus=212	max_right_plus=216	neg_log10_pos_hash_p_value=0.9	new_junction_coverage=0.66	new_junction_read_count=50	polymorphism_frequency=9.470e-01	pos_hash_score=35	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.03	side_1_overlap=29	side_1_possible_overlap_registers=214	side_1_read_count=3	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.04	side_2_overlap=0	side_2_possible_overlap_registers=185	side_2_read_count=3	side_2_redundant=0	total_non_overlap_reads=50
JC	5837	.	1	1311824	-1	1	1311825	1	-3	alignment_overlap=-3	coverage_minus=21	coverage_plus=27	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=211	key=1__1311824__-1__1__1311825__1__-3__TTA__251__251__0__0	max_left=239	max_left_minus=239	max_left_plus=234	max_min_left=123	max_min_left_minus=123	max_min_left_plus=105	max_min_right=118	max_min_right_minus=75	max_min_right_plus=118	max_pos_hash_score=416	max_right=230	max_right_minus=230	max_right_plus=230	neg_log10_pos_hash_p_value=1.0	new_junction_coverage=0.54	new_junction_read_count=47	polymorphism_frequency=1.000e+00	pos_hash_score=37	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=4	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=210	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=48	unique_read_sequence=TTA
JC	5838	.	1	1313947	-1	1	1317494	1	0	alignment_overlap=5	coverage_minus=39	coverage_plus=33	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=209	key=1__1313947__-1__1__1317489__1__5____251__251__0__0	max_left=235	max_left_minus=235	max_left_plus=232	max_min_left=119	max_min_left_minus=116	max_min_left_plus=119	max_min_right=114	max_min_right_minus=109	max_min_right_plus=114	max_pos_hash_score=420	max_right=243	max_right_minus=243	max_right_plus=236	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=0.85	new_junction_read_count=73	polymorphism_frequency=1.000e+00	pos_hash_score=44	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=5	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=72
JC	5839	.	1	1334559	-1	1	1334609	-1	0	alignment_overlap=22	coverage_minus=1	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=5.327e-02	junction_possible_overlap_registers=192	key=1__1334559__-1__1__1334631__-1__22____251__251__0__0	max_left=177	max_left_minus=157	max_left_plus=177	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=51	max_min_right_minus=45	max_min_right_plus=51	max_pos_hash_score=386	max_right=51	max_right_minus=45	max_right_plus=51	neg_log10_pos_hash_p_value=6.4	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=5.327e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.86	side_1_overlap=22	side_1_possible_overlap_registers=214	side_1_read_count=76	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.93	side_2_overlap=0	side_2_possible_overlap_registers=192	side_2_read_count=74	side_2_redundant=0	total_non_overlap_reads=4
JC	5840	.	1	1380387	-1	1	1380659	-1	0	alignment_overlap=8	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.947e-02	junction_possible_overlap_registers=206	key=1__1380387__-1__1__1380667__-1__8____251__251__0__0	max_left=127	max_left_minus=28	max_left_plus=127	max_min_left=28	max_min_left_minus=28	max_min_left_plus=0	max_min_right=79	max_min_right_minus=0	max_min_right_plus=79	max_pos_hash_score=414	max_right=134	max_right_minus=134	max_right_plus=79	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.947e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.60	side_1_overlap=8	side_1_possible_overlap_registers=214	side_1_read_count=53	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.12	side_2_overlap=0	side_2_possible_overlap_registers=206	side_2_read_count=95	side_2_redundant=0	total_non_overlap_reads=3
JC	5841	.	1	1398658	-1	1	1398659	1	-9	alignment_overlap=-9	coverage_minus=26	coverage_plus=28	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=205	key=1__1398658__-1__1__1398659__1__-9__CAACTTACC__251__251__0__0	max_left=220	max_left_minus=206	max_left_plus=220	max_min_left=117	max_min_left_minus=117	max_min_left_plus=111	max_min_right=120	max_min_right_minus=120	max_min_right_plus=96	max_pos_hash_score=380	max_right=234	max_right_minus=234	max_right_plus=216	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.60	new_junction_read_count=51	polymorphism_frequency=1.000e+00	pos_hash_score=47	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=16	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=198	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=54	unique_read_sequence=CAACTTACC
JC	5842	.	1	1400645	1	1	1400858	1	0	alignment_overlap=6	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=5.067e-02	junction_possible_overlap_registers=208	key=1__1400645__1__1__1400852__1__6____251__251__0__0	max_left=102	max_left_minus=102	max_left_plus=64	max_min_left=102	max_min_left_minus=102	max_min_left_plus=64	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=418	max_right=187	max_right_minus=143	max_right_plus=187	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=5.067e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.65	side_1_overlap=6	side_1_possible_overlap_registers=214	side_1_read_count=57	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.66	side_2_overlap=0	side_2_possible_overlap_registers=208	side_2_read_count=57	side_2_redundant=0	total_non_overlap_reads=3
JC	5843	.	1	1402083	-1	1	1402687	1	0	alignment_overlap=2	coverage_minus=17	coverage_plus=18	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=212	key=1__1402083__-1__1__1402685__1__2____251__251__0__0	max_left=235	max_left_minus=235	max_left_plus=230	max_min_left=115	max_min_left_minus=115	max_min_left_plus=109	max_min_right=120	max_min_right_minus=120	max_min_right_plus=70	max_pos_hash_score=426	max_right=206	max_right_minus=176	max_right_plus=206	neg_log10_pos_hash_p_value=1.5	new_junction_coverage=0.40	new_junction_read_count=35	polymorphism_frequency=1.000e+00	pos_hash_score=31	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=2	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=212	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=35
JC	5844	.	1	1407327	-1	1	1408177	1	0	alignment_overlap=2	coverage_minus=30	coverage_plus=36	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=212	key=1__1407327__-1__1__1408175__1__2____251__251__0__0	max_left=242	max_left_minus=242	max_left_plus=242	max_min_left=124	max_min_left_minus=116	max_min_left_plus=124	max_min_right=120	max_min_right_minus=120	max_min_right_plus=91	max_pos_hash_score=426	max_right=246	max_right_minus=226	max_right_plus=246	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.75	new_junction_read_count=66	polymorphism_frequency=1.000e+00	pos_hash_score=50	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=2	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=212	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=66
JC	5845	.	1	1408247	-1	1	1408439	-1	0	alignment_overlap=9	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=7.222e-02	junction_possible_overlap_registers=205	key=1__1408247__-1__1__1408448__-1__9____251__251__0__0	max_left=64	max_left_minus=57	max_left_plus=64	max_min_left=64	max_min_left_minus=57	max_min_left_plus=64	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=412	max_right=185	max_right_minus=185	max_right_plus=138	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=7.222e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.25	side_1_overlap=9	side_1_possible_overlap_registers=214	side_1_read_count=22	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.66	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=56	side_2_redundant=0	total_non_overlap_reads=3
JC	5846	.	1	1445346	-1	1	1445347	1	-4	alignment_overlap=-4	coverage_minus=38	coverage_plus=29	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=210	key=1__1445346__-1__1__1445347__1__-4__TGCC__251__251__0__0	max_left=241	max_left_minus=220	max_left_plus=241	max_min_left=123	max_min_left_minus=104	max_min_left_plus=123	max_min_right=115	max_min_right_minus=114	max_min_right_plus=115	max_pos_hash_score=420	max_right=240	max_right_minus=227	max_right_plus=240	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.80	new_junction_read_count=69	polymorphism_frequency=1.000e+00	pos_hash_score=48	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=1	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=213	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=67	unique_read_sequence=TGCC
JC	5847	.	1	1446088	-1	1	1446099	1	0	alignment_overlap=1	coverage_minus=37	coverage_plus=28	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=213	key=1__1446088__-1__1__1446098__1__1____251__251__0__0	max_left=247	max_left_minus=229	max_left_plus=247	max_min_left=116	max_min_left_minus=116	max_min_left_plus=104	max_min_right=122	max_min_right_minus=114	max_min_right_plus=122	max_pos_hash_score=428	max_right=238	max_right_minus=235	max_right_plus=238	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.75	new_junction_read_count=66	polymorphism_frequency=1.000e+00	pos_hash_score=51	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=1	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=213	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=65
JC	5848	.	1	1448861	-1	1	1449461	-1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=4.025e-02	junction_possible_overlap_registers=204	key=1__1448861__-1__1__1449471__-1__10____251__251__0__0	max_left=225	max_left_minus=146	max_left_plus=225	max_min_left=92	max_min_left_minus=92	max_min_left_plus=0	max_min_right=94	max_min_right_minus=94	max_min_right_plus=14	max_pos_hash_score=410	max_right=148	max_right_minus=148	max_right_plus=14	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=4.025e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.71	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=63	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.99	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=83	side_2_redundant=0	total_non_overlap_reads=3
JC	5849	.	1	1460807	-1	1	1461545	1	-25	alignment_overlap=-25	coverage_minus=6	coverage_plus=10	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=189	key=1__1460807__-1__1__1461545__1__-25__TACGTGCTTGAATTTATGCTTACAT__251__251__0__0	max_left=221	max_left_minus=221	max_left_plus=203	max_min_left=62	max_min_left_minus=6	max_min_left_plus=62	max_min_right=100	max_min_right_minus=100	max_min_right_plus=43	max_pos_hash_score=380	max_right=224	max_right_minus=107	max_right_plus=224	neg_log10_pos_hash_p_value=2.9	new_junction_coverage=0.30	new_junction_read_count=23	polymorphism_frequency=9.124e-01	pos_hash_score=16	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.01	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.05	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=4	side_2_redundant=0	total_non_overlap_reads=16	unique_read_sequence=TACGTGCTTGAATTTATGCTTACAT
JC	5850	.	1	1483905	-1	1	1483910	1	0	alignment_overlap=5	coverage_minus=44	coverage_plus=36	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=209	key=1__1483905__-1__1__1483905__1__5____251__251__0__0	max_left=238	max_left_minus=238	max_left_plus=212	max_min_left=94	max_min_left_minus=94	max_min_left_plus=83	max_min_right=120	max_min_right_minus=120	max_min_right_plus=66	max_pos_hash_score=420	max_right=245	max_right_minus=245	max_right_plus=242	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.93	new_junction_read_count=80	polymorphism_frequency=1.000e+00	pos_hash_score=56	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=5	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=80
JC	5851	.	1	1506215	-1	1	1506216	1	-3	alignment_overlap=-3	coverage_minus=61	coverage_plus=53	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=211	key=1__1506215__-1__1__1506216__1__-3__TTT__251__251__0__0	max_left=225	max_left_minus=225	max_left_plus=224	max_min_left=123	max_min_left_minus=123	max_min_left_plus=116	max_min_right=124	max_min_right_minus=124	max_min_right_plus=117	max_pos_hash_score=424	max_right=233	max_right_minus=233	max_right_plus=230	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.32	new_junction_read_count=115	polymorphism_frequency=1.000e+00	pos_hash_score=73	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=114	unique_read_sequence=TTT
JC	5852	.	1	1511384	1	1	1511380	-1	0	alignment_overlap=6	coverage_minus=45	coverage_plus=51	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=208	key=1__1511384__1__1__1511386__-1__6____251__251__0__0	max_left=242	max_left_minus=242	max_left_plus=242	max_min_left=122	max_min_left_minus=122	max_min_left_plus=99	max_min_right=117	max_min_right_minus=97	max_min_right_plus=117	max_pos_hash_score=418	max_right=242	max_right_minus=242	max_right_plus=234	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.12	new_junction_read_count=96	polymorphism_frequency=1.000e+00	pos_hash_score=65	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=6	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=208	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=96
JC	5853	.	1	1516245	1	1	1516231	-1	0	alignment_overlap=31	coverage_minus=24	coverage_plus=43	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=183	key=1__1516245__1__1__1516262__-1__31____251__251__0__0	max_left=218	max_left_minus=217	max_left_plus=218	max_min_left=106	max_min_left_minus=106	max_min_left_plus=93	max_min_right=110	max_min_right_minus=107	max_min_right_plus=110	max_pos_hash_score=368	max_right=207	max_right_minus=207	max_right_plus=178	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.89	new_junction_read_count=67	polymorphism_frequency=1.000e+00	pos_hash_score=45	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=31	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=183	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=67
JC	5854	.	1	1524831	-1	1	1525440	-1	0	alignment_overlap=6	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.517e-02	junction_possible_overlap_registers=208	key=1__1524831__-1__1__1525446__-1__6____251__251__0__0	max_left=222	max_left_minus=222	max_left_plus=144	max_min_left=108	max_min_left_minus=0	max_min_left_plus=108	max_min_right=100	max_min_right_minus=23	max_min_right_plus=100	max_pos_hash_score=418	max_right=127	max_right_minus=23	max_right_plus=127	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=3.517e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.96	side_1_overlap=6	side_1_possible_overlap_registers=214	side_1_read_count=85	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.96	side_2_overlap=0	side_2_possible_overlap_registers=208	side_2_read_count=82	side_2_redundant=0	total_non_overlap_reads=3
JC	5855	.	1	1533695	-1	1	1534203	-1	0	alignment_overlap=10	coverage_minus=0	coverage_plus=5	flanking_left=251	flanking_right=251	frequency=6.695e-02	junction_possible_overlap_registers=204	key=1__1533695__-1__1__1534213__-1__10____251__251__0__0	max_left=168	max_left_minus=0	max_left_plus=168	max_min_left=106	max_min_left_minus=0	max_min_left_plus=106	max_min_right=73	max_min_right_minus=0	max_min_right_plus=73	max_pos_hash_score=410	max_right=135	max_right_minus=0	max_right_plus=135	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=6.695e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.88	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=78	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.77	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=65	side_2_redundant=0	total_non_overlap_reads=5
JC	5856	.	1	1564817	-1	1	1564821	1	0	alignment_overlap=2	coverage_minus=22	coverage_plus=24	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=212	key=1__1564817__-1__1__1564819__1__2____251__251__0__0	max_left=247	max_left_minus=244	max_left_plus=247	max_min_left=124	max_min_left_minus=104	max_min_left_plus=124	max_min_right=120	max_min_right_minus=120	max_min_right_plus=119	max_pos_hash_score=426	max_right=242	max_right_minus=201	max_right_plus=242	neg_log10_pos_hash_p_value=0.8	new_junction_coverage=0.53	new_junction_read_count=46	polymorphism_frequency=1.000e+00	pos_hash_score=41	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=2	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=212	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=46
JC	5857	.	1	1568439	-1	1	1568440	1	-5	alignment_overlap=-5	coverage_minus=16	coverage_plus=7	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=209	key=1__1568439__-1__1__1568440__1__-5__AATAA__251__251__0__0	max_left=243	max_left_minus=173	max_left_plus=243	max_min_left=114	max_min_left_minus=72	max_min_left_plus=114	max_min_right=107	max_min_right_minus=101	max_min_right_plus=107	max_pos_hash_score=420	max_right=245	max_right_minus=245	max_right_plus=186	neg_log10_pos_hash_p_value=2.8	new_junction_coverage=0.27	new_junction_read_count=23	polymorphism_frequency=1.000e+00	pos_hash_score=19	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=23	unique_read_sequence=AATAA
JC	5858	.	1	1572200	-1	1	1573148	1	-53	alignment_overlap=-53	coverage_minus=22	coverage_plus=27	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=161	key=1__1572200__-1__1__1573148__1__-53__CCGATCGGATTATGGTCATGAAAAAAGGCGTGATCGAACAAATCGATACGCCG__251__251__0__0	max_left=189	max_left_minus=189	max_left_plus=188	max_min_left=97	max_min_left_minus=97	max_min_left_plus=95	max_min_right=97	max_min_right_minus=92	max_min_right_plus=97	max_pos_hash_score=324	max_right=186	max_right_minus=186	max_right_plus=154	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.74	new_junction_read_count=49	polymorphism_frequency=1.000e+00	pos_hash_score=37	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=49	unique_read_sequence=CCGATCGGATTATGGTCATGAAAAAAGGCGTGATCGAACAAATCGATACGCCG
JC	5859	.	1	1589594	1	1	1589837	1	0	alignment_overlap=9	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.842e-02	junction_possible_overlap_registers=205	key=1__1589594__1__1__1589828__1__9____251__251__0__0	max_left=200	max_left_minus=127	max_left_plus=200	max_min_left=70	max_min_left_minus=0	max_min_left_plus=70	max_min_right=115	max_min_right_minus=115	max_min_right_plus=41	max_pos_hash_score=412	max_right=172	max_right_minus=115	max_right_plus=172	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.842e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.76	side_1_overlap=9	side_1_possible_overlap_registers=214	side_1_read_count=67	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.02	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=86	side_2_redundant=0	total_non_overlap_reads=3
JC	5860	.	1	1650748	-1	1	1651680	-1	0	alignment_overlap=7	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=3.980e-02	junction_possible_overlap_registers=207	key=1__1650748__-1__1__1651687__-1__7____251__251__0__0	max_left=108	max_left_minus=56	max_left_plus=108	max_min_left=108	max_min_left_minus=56	max_min_left_plus=108	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=416	max_right=187	max_right_minus=187	max_right_plus=136	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.980e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.78	side_1_overlap=7	side_1_possible_overlap_registers=214	side_1_read_count=69	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.91	side_2_overlap=0	side_2_possible_overlap_registers=207	side_2_read_count=78	side_2_redundant=0	total_non_overlap_reads=3
JC	5861	.	1	1651938	1	1	1652061	1	0	alignment_overlap=11	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=3.059e-02	junction_possible_overlap_registers=203	key=1__1651938__1__1__1652050__1__11____251__251__0__0	max_left=103	max_left_minus=103	max_left_plus=41	max_min_left=103	max_min_left_minus=103	max_min_left_plus=41	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=408	max_right=194	max_right_minus=136	max_right_plus=194	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.059e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.08	side_1_overlap=11	side_1_possible_overlap_registers=214	side_1_read_count=95	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.19	side_2_overlap=0	side_2_possible_overlap_registers=203	side_2_read_count=100	side_2_redundant=0	total_non_overlap_reads=3
JC	5862	.	1	1775047	1	1	1775039	-1	0	alignment_overlap=9	coverage_minus=39	coverage_plus=35	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=205	key=1__1775047__1__1__1775048__-1__9____251__251__0__0	max_left=237	max_left_minus=237	max_left_plus=212	max_min_left=119	max_min_left_minus=104	max_min_left_plus=119	max_min_right=94	max_min_right_minus=94	max_min_right_plus=94	max_pos_hash_score=412	max_right=241	max_right_minus=241	max_right_plus=213	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.89	new_junction_read_count=75	polymorphism_frequency=1.000e+00	pos_hash_score=53	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=9	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=74
JC	5863	.	1	1781296	1	1	1781644	1	0	alignment_overlap=12	coverage_minus=0	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=4.250e-02	junction_possible_overlap_registers=202	key=1__1781296__1__1__1781632__1__12____251__251__0__0	max_left=228	max_left_minus=0	max_left_plus=228	max_min_left=106	max_min_left_minus=0	max_min_left_plus=106	max_min_right=11	max_min_right_minus=0	max_min_right_plus=11	max_pos_hash_score=406	max_right=134	max_right_minus=0	max_right_plus=134	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=4.250e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.77	side_1_overlap=12	side_1_possible_overlap_registers=214	side_1_read_count=68	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.85	side_2_overlap=0	side_2_possible_overlap_registers=202	side_2_read_count=71	side_2_redundant=0	total_non_overlap_reads=3
JC	5864	.	1	1786507	-1	1	1787799	1	0	alignment_overlap=2	coverage_minus=56	coverage_plus=37	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=212	key=1__1786507__-1__1__1787797__1__2____251__251__0__0	max_left=245	max_left_minus=238	max_left_plus=245	max_min_left=124	max_min_left_minus=116	max_min_left_plus=124	max_min_right=123	max_min_right_minus=123	max_min_right_plus=117	max_pos_hash_score=426	max_right=234	max_right_minus=234	max_right_plus=228	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.10	new_junction_read_count=96	polymorphism_frequency=1.000e+00	pos_hash_score=67	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=2	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=212	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=93
JC	5865	.	1	1805429	-1	1	1805599	-1	0	alignment_overlap=6	coverage_minus=1	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=6.056e-02	junction_possible_overlap_registers=208	key=1__1805429__-1__1__1805605__-1__6____251__251__0__0	max_left=188	max_left_minus=148	max_left_plus=188	max_min_left=108	max_min_left_minus=0	max_min_left_plus=108	max_min_right=97	max_min_right_minus=97	max_min_right_plus=23	max_pos_hash_score=418	max_right=138	max_right_minus=97	max_right_plus=138	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=6.056e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.77	side_1_overlap=6	side_1_possible_overlap_registers=214	side_1_read_count=68	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.68	side_2_overlap=0	side_2_possible_overlap_registers=208	side_2_read_count=58	side_2_redundant=0	total_non_overlap_reads=4
JC	5866	.	1	1805462	-1	1	1805569	-1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=6.025e-02	junction_possible_overlap_registers=204	key=1__1805462__-1__1__1805579__-1__10____251__251__0__0	max_left=133	max_left_minus=101	max_left_plus=133	max_min_left=101	max_min_left_minus=101	max_min_left_plus=68	max_min_right=108	max_min_right_minus=0	max_min_right_plus=108	max_pos_hash_score=410	max_right=108	max_right_minus=108	max_right_plus=108	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=6.025e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.78	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=69	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.70	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=59	side_2_redundant=0	total_non_overlap_reads=4
JC	5867	.	1	1828863	-1	1	1829041	-1	0	alignment_overlap=6	coverage_minus=1	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=3.504e-02	junction_possible_overlap_registers=208	key=1__1828863__-1__1__1829047__-1__6____251__251__0__0	max_left=198	max_left_minus=84	max_left_plus=198	max_min_left=84	max_min_left_minus=84	max_min_left_plus=74	max_min_right=47	max_min_right_minus=0	max_min_right_plus=47	max_pos_hash_score=418	max_right=179	max_right_minus=160	max_right_plus=179	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=3.504e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.09	side_1_overlap=6	side_1_possible_overlap_registers=214	side_1_read_count=96	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.48	side_2_overlap=0	side_2_possible_overlap_registers=208	side_2_read_count=127	side_2_redundant=0	total_non_overlap_reads=4
JC	5868	.	1	1832165	-1	1	1832536	-1	0	alignment_overlap=10	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=2.938e-02	junction_possible_overlap_registers=204	key=1__1832165__-1__1__1832546__-1__10____251__251__0__0	max_left=165	max_left_minus=165	max_left_plus=50	max_min_left=50	max_min_left_minus=0	max_min_left_plus=50	max_min_right=75	max_min_right_minus=75	max_min_right_plus=0	max_pos_hash_score=410	max_right=208	max_right_minus=75	max_right_plus=208	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=2.938e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.17	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=103	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.19	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=100	side_2_redundant=0	total_non_overlap_reads=3
JC	5869	.	1	1842086	-1	1	1842191	-1	0	alignment_overlap=10	coverage_minus=0	coverage_plus=4	flanking_left=251	flanking_right=251	frequency=4.818e-02	junction_possible_overlap_registers=204	key=1__1842086__-1__1__1842201__-1__10____251__251__0__0	max_left=164	max_left_minus=0	max_left_plus=164	max_min_left=45	max_min_left_minus=0	max_min_left_plus=45	max_min_right=105	max_min_right_minus=0	max_min_right_plus=105	max_pos_hash_score=410	max_right=105	max_right_minus=0	max_right_plus=105	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=4.818e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.96	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=85	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.92	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=77	side_2_redundant=0	total_non_overlap_reads=4
JC	5870	.	1	1846628	1	1	1847756	1	0	alignment_overlap=10	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=4.005e-02	junction_possible_overlap_registers=204	key=1__1846628__1__1__1847746__1__10____251__251__0__0	max_left=168	max_left_minus=168	max_left_plus=150	max_min_left=77	max_min_left_minus=0	max_min_left_plus=77	max_min_right=46	max_min_right_minus=46	max_min_right_plus=46	max_pos_hash_score=410	max_right=164	max_right_minus=46	max_right_plus=164	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=4.005e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.77	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=68	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.94	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=79	side_2_redundant=0	total_non_overlap_reads=3
JC	5871	.	1	1890996	1	1	1891164	1	0	alignment_overlap=5	coverage_minus=2	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.471e-02	junction_possible_overlap_registers=209	key=1__1890996__1__1__1891159__1__5____251__251__0__0	max_left=118	max_left_minus=59	max_left_plus=118	max_min_left=59	max_min_left_minus=59	max_min_left_plus=59	max_min_right=106	max_min_right_minus=0	max_min_right_plus=106	max_pos_hash_score=420	max_right=187	max_right_minus=187	max_right_plus=107	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=3.471e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.21	side_1_overlap=5	side_1_possible_overlap_registers=214	side_1_read_count=107	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.37	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=118	side_2_redundant=0	total_non_overlap_reads=4
JC	5872	.	1	1909057	1	1	1909232	1	0	alignment_overlap=12	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=3.896e-02	junction_possible_overlap_registers=202	key=1__1909057__1__1__1909220__1__12____251__251__0__0	max_left=117	max_left_minus=117	max_left_plus=87	max_min_left=117	max_min_left_minus=117	max_min_left_plus=87	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=406	max_right=152	max_right_minus=146	max_right_plus=152	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.896e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.80	side_1_overlap=12	side_1_possible_overlap_registers=214	side_1_read_count=71	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.97	side_2_overlap=0	side_2_possible_overlap_registers=202	side_2_read_count=81	side_2_redundant=0	total_non_overlap_reads=3
JC	5873	.	1	1938591	1	1	1938745	1	0	alignment_overlap=13	coverage_minus=5	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=9.445e-02	junction_possible_overlap_registers=201	key=1__1938591__1__1__1938732__1__13____251__251__0__0	max_left=82	max_left_minus=43	max_left_plus=82	max_min_left=82	max_min_left_minus=43	max_min_left_plus=82	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=404	max_right=209	max_right_minus=209	max_right_plus=160	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=7	polymorphism_frequency=9.445e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.70	side_1_overlap=13	side_1_possible_overlap_registers=214	side_1_read_count=62	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.92	side_2_overlap=0	side_2_possible_overlap_registers=201	side_2_read_count=76	side_2_redundant=0	total_non_overlap_reads=7
JC	5874	.	1	1950557	-1	1	1950558	1	-3	alignment_overlap=-3	coverage_minus=47	coverage_plus=38	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=211	key=1__1950557__-1__1__1950558__1__-3__TAT__251__251__0__0	max_left=243	max_left_minus=233	max_left_plus=243	max_min_left=119	max_min_left_minus=102	max_min_left_plus=119	max_min_right=114	max_min_right_minus=113	max_min_right_plus=114	max_pos_hash_score=416	max_right=247	max_right_minus=247	max_right_plus=233	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=0.88	new_junction_read_count=77	polymorphism_frequency=1.000e+00	pos_hash_score=64	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=4	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=210	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=85	unique_read_sequence=TAT
JC	5875	.	1	1982592	1	1	1982896	1	0	alignment_overlap=8	coverage_minus=2	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=5.616e-02	junction_possible_overlap_registers=206	key=1__1982592__1__1__1982888__1__8____251__251__0__0	max_left=147	max_left_minus=147	max_left_plus=122	max_min_left=1	max_min_left_minus=1	max_min_left_plus=1	max_min_right=122	max_min_right_minus=97	max_min_right_plus=122	max_pos_hash_score=414	max_right=240	max_right_minus=97	max_right_plus=240	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=5.616e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.77	side_1_overlap=8	side_1_possible_overlap_registers=214	side_1_read_count=68	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.81	side_2_overlap=0	side_2_possible_overlap_registers=206	side_2_read_count=69	side_2_redundant=0	total_non_overlap_reads=4
JC	5876	.	1	2001169	-1	1	2002006	1	0	alignment_overlap=2	coverage_minus=26	coverage_plus=37	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=212	key=1__2001169__-1__1__2002004__1__2____251__251__0__0	max_left=246	max_left_minus=226	max_left_plus=246	max_min_left=120	max_min_left_minus=120	max_min_left_plus=104	max_min_right=121	max_min_right_minus=121	max_min_right_plus=121	max_pos_hash_score=426	max_right=247	max_right_minus=221	max_right_plus=247	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=0.72	new_junction_read_count=63	polymorphism_frequency=1.000e+00	pos_hash_score=43	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=2	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=212	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=63
JC	5877	.	1	2011696	-1	1	2011816	-1	0	alignment_overlap=8	coverage_minus=1	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=5.909e-02	junction_possible_overlap_registers=206	key=1__2011696__-1__1__2011824__-1__8____251__251__0__0	max_left=187	max_left_minus=165	max_left_plus=187	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=113	max_min_right_minus=54	max_min_right_plus=113	max_pos_hash_score=414	max_right=113	max_right_minus=54	max_right_plus=113	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=5.909e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.79	side_1_overlap=8	side_1_possible_overlap_registers=214	side_1_read_count=70	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.71	side_2_overlap=0	side_2_possible_overlap_registers=206	side_2_read_count=60	side_2_redundant=0	total_non_overlap_reads=4
JC	5878	.	1	2042713	-1	1	2042714	1	-5	alignment_overlap=-5	coverage_minus=53	coverage_plus=52	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=209	key=1__2042713__-1__1__2042714__1__-5__CGCCC__251__251__0__0	max_left=230	max_left_minus=230	max_left_plus=219	max_min_left=122	max_min_left_minus=111	max_min_left_plus=122	max_min_right=121	max_min_right_minus=121	max_min_right_plus=111	max_pos_hash_score=400	max_right=243	max_right_minus=243	max_right_plus=216	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.20	new_junction_read_count=103	polymorphism_frequency=9.904e-01	pos_hash_score=68	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=10	side_1_coverage=0.01	side_1_overlap=0	side_1_possible_overlap_registers=204	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.01	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=1	side_2_redundant=0	total_non_overlap_reads=105	unique_read_sequence=CGCCC
JC	5879	.	1	2044377	-1	1	2045379	1	0	alignment_overlap=5	coverage_minus=37	coverage_plus=39	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=209	key=1__2044377__-1__1__2045374__1__5____251__251__0__0	max_left=243	max_left_minus=243	max_left_plus=238	max_min_left=122	max_min_left_minus=115	max_min_left_plus=122	max_min_right=120	max_min_right_minus=120	max_min_right_plus=116	max_pos_hash_score=420	max_right=242	max_right_minus=242	max_right_plus=240	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.88	new_junction_read_count=76	polymorphism_frequency=1.000e+00	pos_hash_score=59	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=5	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=76
JC	5880	.	1	2086247	-1	1	2087047	-1	0	alignment_overlap=6	coverage_minus=1	coverage_plus=4	flanking_left=251	flanking_right=251	frequency=5.174e-02	junction_possible_overlap_registers=208	key=1__2086247__-1__1__2087053__-1__6____251__251__0__0	max_left=138	max_left_minus=115	max_left_plus=138	max_min_left=65	max_min_left_minus=0	max_min_left_plus=65	max_min_right=107	max_min_right_minus=107	max_min_right_plus=107	max_pos_hash_score=418	max_right=107	max_right_minus=107	max_right_plus=107	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=5.174e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.10	side_1_overlap=6	side_1_possible_overlap_registers=214	side_1_read_count=97	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.04	side_2_overlap=0	side_2_possible_overlap_registers=208	side_2_read_count=89	side_2_redundant=0	total_non_overlap_reads=5
JC	5881	.	1	2108067	-1	1	2108068	1	-8	alignment_overlap=-8	coverage_minus=41	coverage_plus=40	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=206	key=1__2108067__-1__1__2108068__1__-8__GGTCGGTT__251__251__0__0	max_left=226	max_left_minus=226	max_left_plus=217	max_min_left=111	max_min_left_minus=100	max_min_left_plus=111	max_min_right=118	max_min_right_minus=118	max_min_right_plus=99	max_pos_hash_score=414	max_right=235	max_right_minus=235	max_right_plus=217	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.97	new_junction_read_count=82	polymorphism_frequency=1.000e+00	pos_hash_score=58	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=81	unique_read_sequence=GGTCGGTT
UN	5882	.	1	5200	6098
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