#!/bin/bash
# RNA-Seq 
# 2021-01

#SBATCH --nodes=1			
#SBATCH --ntasks-per-node=1
#SBATCH --mem=64GB
#SBATCH --job-name=Rename_Rast


# Choose between long or short: A short job will start quickly after submitting, but will be terminated after 30 minutes

##SBATCH --time=24:00:00
#SBATCH -p short

export PERL5LIB=/data/pg-molgen/software/molgentools_mirror/lib
module load BioPerl/1.7.7-GCCcore-9.3.0

# rename ID using the scheme below: see lookup_table.txt

datadir=/data/p127804/PROJECTS/JanMaarten/Yanyan_202101/Aa_annotation-chapter2

/data/pg-molgen/software/molgentools_mirror/genomics/g2d_align_tables.pl -s $datadir -t $datadir/all_nr_RAST.tab -k $datadir/lookup_table.txt -r Find_Replace -o all_nr.tab